Scientific Publications

The genomic basis of adaptive evolution in threespine sticklebacks.Jones, FC, Grabherr MG, Chan YF, Russell P., Mauceli E., Johnson J., Swofford R., Pirun M., Zody MC, White S., Birney E., Searle S., Schmutz J., Grimwood J., Dickson MC, Myers RM, Miller CT, Summers BR, Knecht AK, Brady SD, et al. Nature, 2012/04/04, Volume 484, Issue 7392, p.55-61, (2012) Read More / View Supplemental Materials

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Abstract

Exploiting nucleotide composition to engineer promoters.Grabherr, MG, Pontiller J., Mauceli E., Ernst W., Baumann M., Biagi T., Swofford R., Russell P., Zody MC, Di Palma F., Lindblad-Toh K., and Grabherr RM PloS one, 2012/01/09, Volume 6, Issue 5, p.e20136, (2012) Read More / View Supplemental Materials

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Abstract

Computational methods for transcriptome annotation and quantification using RNA-seq.Garber, M., Grabherr MG, Guttman M., and Trapnell C. Nature methods, 2011/06/01, Volume 8, Issue 6, p.469-77, (2011) Read More / View Supplemental Materials

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Abstract

Obligate biotrophy features unraveled by the genomic analysis of rust fungi.Duplessis, S., Cuomo CA, Lin YC, Aerts A., Tisserant E., Veneault-Fourrey C., Joly DL, Hacquard S., Amselem J., Cantarel BL, Chiu R., Coutinho PM, Feau N., Field M., Frey P., Gelhaye E., Goldberg J., Grabherr MG, Kodira CD, Kohler A., et al. Proceedings of the National Academy of Sciences of the United States of America, 2011/05/31, Volume 108, Issue 22, p.9166-71, (2011) Read More / View Supplemental Materials

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Abstract

Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, MG, Haas BJ, Yassour M., Levin JZ, Thompson DA, Amit I., Adiconis X., Fan L., Raychowdhury R., Zeng Q., Chen Z., Mauceli E., Hacohen N., Gnirke A., Rhind N., Di Palma F., Birren BW, Nusbaum C., Lindblad-Toh K., Friedman N., et al. Nature biotechnology, 2011/05/15, Volume 29, Issue 7, p.644-52, (2011) Read More / View Supplemental Materials

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Abstract

Genome-wide synteny through highly sensitive sequence alignment: Satsuma.Grabherr, MG, Russell P., Meyer M., Mauceli E., Alföldi J., Di Palma F., and Lindblad-Toh K. Bioinformatics (Oxford, England), 2010/05/01, Volume 26, Issue 9, p.1145-51, (2010) Read More / View Supplemental Materials

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Abstract

Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication.Ma, LJ, Ibrahim AS, Skory C., Grabherr MG, Burger G., Butler M., Elias M., Idnurm A., Lang BF, Sone T., Abe A., Calvo SE, Corrochano LM, Engels R., Fu J., Hansberg W., Kim JM, Kodira CD, Koehrsen MJ, Liu B., et al. PLoS genetics, 2009/07/01, Volume 5, Issue 7, p.e1000549, (2009) Read More / View Supplemental Materials

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Abstract