Scientific Publications

Prognostic Gene-Expression Signature for Patients with Hepatitis C-Related Early-Stage Cirrhosis.Hoshida, Y., Villanueva A., Sangiovanni A., Sole M., Hur C., Andersson KL, Chung RT, Gould J., Kojima K., Gupta S., Taylor B., Crenshaw A., Gabriel S., Minguez B., Iavarone M., Friedman SL, Colombo M., Llovet JM, and Golub T. R. Gastroenterology, 2013/01/17, (2013) Read More / View Supplemental Materials

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Abstract

Expression Profiling of Archival Tumors for Long-term Health Studies.Waldron, L., Ogino S., Hoshida Y., Shima K., McCart Reed AE, Simpson PT, Baba Y., Nosho K., Segata N., Vargas AC, Cummings MC, Lakhani SR, Kirkner GJ, Giovannucci E., Quackenbush J., Golub T. R., Fuchs CS, Parmigiani G., and Huttenhower C. Clinical cancer research : an official journal of the American Association for Cancer Research, 2012/11/15, Volume 18, Issue 22, p.6136-6146, (2012) Read More / View Supplemental Materials

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Abstract

Genomic risk of hepatitis C-related hepatocellular carcinoma.Hoshida, Y., Fuchs BC, and Tanabe KK Journal of hepatology, 2011/09/29, (2011) Read More / View Supplemental Materials

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Abstract

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion.Bass, AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y., Cibulskis K., Sougnez C., Voet D., Saksena G., Sivachenko A., Jing R., Parkin M., Pugh T., Verhaak RG, Stransky N., Boutin AT, Barretina J., Solit DB, Vakiani E., Shao W., et al. Nature genetics, 2011/09/04, Volume 43, Issue 10, p.964-8, (2011) Read More / View Supplemental Materials

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Abstract

Molecular signatures and prognosis of hepatocellular carcinoma.Hoshida, Y. Minerva gastroenterologica e dietologica, 2011/09/01, Volume 57, Issue 3, p.311-22, (2011) Read More / View Supplemental Materials

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Abstract

mRNA expression signature of Gleason grade predicts lethal prostate cancer.Penney, KL, Sinnott JA, Fall K., Pawitan Y., Hoshida Y., Kraft P., Stark JR, Fiorentino M., Perner S., Finn S., Calza S., Flavin R., Freedman ML, Setlur S., Sesso HD, Andersson SO, Martin N., Kantoff PW, Johansson JE, Adami HO, et al. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2011/06/10, Volume 29, Issue 17, p.2391-6, (2011) Read More / View Supplemental Materials

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Abstract

SMAD4-dependent barrier constrains prostate cancer growth and metastatic progression.Ding, Z., Wu CJ, Chu GC, Xiao Y., Ho D., Zhang J., Perry SR, Labrot ES, Wu X., Lis R., Hoshida Y., Hiller D., Hu B., Jiang S., Zheng H., Stegh AH, Scott KL, Signoretti S., Bardeesy N., Wang YA, et al. Nature, 2011/02/10, Volume 470, Issue 7333, p.269-73, (2011) Read More / View Supplemental Materials

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Abstract

Nearest template prediction: a single-sample-based flexible class prediction with confidence assessment.Hoshida, Y. PloS one, 2010/11/23, Volume 5, Issue 11, p.e15543, (2010) Read More / View Supplemental Materials

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Abstract

Molecular sampling of prostate cancer: a dilemma for predicting disease progression.Sboner, A., Demichelis F., Calza S., Pawitan Y., Setlur SR, Hoshida Y., Perner S., Adami HO, Fall K., Mucci LA, Kantoff PW, Stampfer M., Andersson SO, Varenhorst E., Johansson JE, Gerstein MB, Golub T. R., Rubin MA, and Andrén O. BMC medical genomics, 2010/03/16, Volume 3, p.8, (2010) Read More / View Supplemental Materials

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Abstract

Molecular classification and novel targets in hepatocellular carcinoma: recent advancements.Hoshida, Y., Toffanin S., Lachenmayer A., Villanueva A., Minguez B., and Llovet JM Seminars in liver disease, 2010/02/01, Volume 30, Issue 1, p.35-51, (2010) Read More / View Supplemental Materials

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Abstract

Integrative transcriptome analysis reveals common molecular subclasses of human hepatocellular carcinoma.Hoshida, Y., Nijman SM, Kobayashi M., Chan JA, Brunet JP, Chiang DY, Villanueva A., Newell P., Ikeda K., Hashimoto M., Watanabe G., Gabriel S., Friedman SL, Kumada H., Llovet JM, and Golub T. R. Cancer research, 2009/09/15, Volume 69, Issue 18, p.7385-92, (2009) Read More / View Supplemental Materials

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Abstract

Lin28 promotes transformation and is associated with advanced human malignancies.Viswanathan, SR, Powers JT, Einhorn W., Hoshida Y., Ng TL, Toffanin S., O'Sullivan M., Lu J., Phillips LA, Lockhart VL, Shah SP, Tanwar PS, Mermel CH, Beroukhim R., Azam M., Teixeira J., Meyerson M., Hughes TP, Llovet JM, Radich J., et al. Nature genetics, 2009/07/01, Volume 41, Issue 7, p.843-8, (2009) Read More / View Supplemental Materials

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Abstract

Prolonged therapy for hepatitis C with low-dose peginterferon.Hoshida, Y., and Golub T. R. The New England journal of medicine, 2009/03/12, Volume 360, Issue 11, p.1152; author reply 1152-3, (2009) Read More / View Supplemental Materials

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Gene expression in fixed tissues and outcome in hepatocellular carcinoma.Hoshida, Y., Villanueva A., Kobayashi M., Peix J., Chiang DY, Camargo A., Gupta S., Moore J., Wrobel MJ, Lerner J., Reich M., Chan JA, Glickman JN, Ikeda K., Hashimoto M., Watanabe G., Daidone MG, Roayaie S., Schwartz M., Thung S., et al. The New England journal of medicine, 2008/11/06, Volume 359, Issue 19, p.1995-2004, (2008) Read More / View Supplemental Materials

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Abstract

Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer.Setlur, SR, Mertz KD, Hoshida Y., Demichelis F., Lupien M., Perner S., Sboner A., Pawitan Y., Andrén O., Johnson LA, Tang J., Adami HO, Calza S., Chinnaiyan AM, Rhodes D., Tomlins S., Fall K., Mucci LA, Kantoff PW, Stampfer MJ, et al. Journal of the National Cancer Institute, 2008/06/04, Volume 100, Issue 11, p.815-25, (2008) Read More / View Supplemental Materials

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Abstract

Subclass mapping: identifying common subtypes in independent disease data sets.Hoshida, Y., Brunet JP, Tamayo P., Golub T. R., and Mesirov J. P. PloS one, 2007/11/21, Volume 2, Issue 11, p.e1195, (2007) Read More / View Supplemental Materials

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Abstract