aligned3 = tools.sort_diclist(aligned3,'name') >>> reload(yeast), yeast.search_known_introns(aligned3,g) { alias......: ['TFC3', 'FUN24', 'TSV115'] chromosome.: 1 description: transcription factor tau (TFIIIC) subunit 138 end........: 151163 exons......: [(1, 70), (161, 3573)] gene.......: TFC3 introns....: [(71, 160)] length.....: 3573 name.......: YAL001C plength....: 1191 start......: 147591 tdist......: 79040 type.......: ORF up.........: 0 } Scer: 7 donors and 5 branches Spar: 11 donors and 5 branches Smik: 5 donors and 4 branches Sbay: 7 donors and 6 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1234), ('Spar', 1234), ('Smik', 1234), ('Sbay', 1234)] ->[('Scer', 3301), ('Spar', 3301), ('Smik', 3301), ('Sbay', 3301)] ->[('Scer', 3367), ('Spar', 3367), ('Spar', 3371), ('Sbay', 3367)] ->[('Scer', 2078), ('Spar', 2078), ('Smik', 2078)] ->[('Spar', 3284), ('Sbay', 3284)] ->[('Sbay', 960)] ->[('Sbay', 1168)] ->[('Sbay', 2276)] ->[('Scer', 1400)] ->[('Scer', 2807)] ->[('Scer', 3843)] ->[('Smik', 1745)] ->[('Smik', 2923)] ->[('Spar', 475)] ->[('Spar', 503)] ->[('Spar', 2377)] ->[('Spar', 3656)] ->[('Spar', 4601)] ] [ ->[('Scer', 1307), ('Spar', 1307), ('Smik', 1307), ('Sbay', 1307)] ->[('Scer', 1546), ('Spar', 1546), ('Smik', 1546), ('Sbay', 1546)] ->[('Spar', 1808), ('Smik', 1808), ('Sbay', 1808)] ->[('Scer', 2741), ('Sbay', 2744)] ->[('Sbay', 184)] ->[('Sbay', 2503)] ->[('Scer', 272)] ->[('Scer', 285)] ->[('Smik', 4265)] ->[('Spar', 382)] ->[('Spar', 1012)] ] 0~120: Scer.....: tggatgtcgattt-taggatatcttgcggtgcttatttgatgtaaaggtctgttatttgatgtttaaaatgacacatt--acaataagctttcacttgtaaatatatcttttattttccg Spar.....: tgggtttccgtttatagagtgtcttgcgttgtctatttggcgtagaggtatagtgtttgatggttagaaatacacattacacaatgggctatcgctggttcttacatcttttatttttga Smik.....: -ttgttaccgtttaaataatatcctgaattgcttatttgaagtgcaaatgtagggtttgttgctttaataaacttgat--atagtgattatacagtggttatatcaagttttacattctg 120~240: Scer.....: -------agaggaaaaagtttcaaaaaaaaaaaaaaaaaaagaagaaaaataactttc---tcatgtaataaaaggta-actaatgtag----acaaa--aaagtataca---tttagct Spar.....: -------gagaaaaaaagtttcaaaaaaaaaaa---------aggaaaaataactttc---tgacataatagaagatg-gcaagtgtcg----acaga--gaagcgaacg---ttttggc Smik.....: aattcgcagaaaaaaaagcttcaaaaaaaaaaaaaa-----taaaaaaaataacttctcaacaatacaatataaaccacataggcatagggccataaattgaagtagaaactccttgagt Sbay.....: --------------caagtatctagtatacagta-------tatgctgagtaacttagttggagtatta-acggactggtgtgttattgctataaacactttcttattgtaaatgaagtc consensus: *** ** * * * * * * ****** * * * * * * * Sbay_spli: BBBBBBBB 240~360: Scer.....: tttctttttttgatgatttttgagtttcatgttactaatcagaacaattaacgacaccttcattatgaaaaaattaattagctataagtctt-cgaagtagaacatgatatttggcaatc Spar.....: ta---cacttgaaaagttcttgaatgctatgatattaataaaaccatctaatgactcttacactatcctttgaattcttggctctcagtcttgcgaaatgccgcatcatcgttggcaatc Smik.....: taaattttgagagaagtttgtgaactttatgatgcaaaagaa---atttagaggccttcatgttatagaaaaaactatttggcttaggacttac-atattttgcgtctttctt-gcatac Sbay.....: ctgacttcttgcacattttgaaaa---aatgttccaaaaaaaa--acctaaaaaaa---atagaatacaaaaactcccgagaaatagaaattagctagaagataatacaagttgaagtac consensus: ** * *** * ** * * ** ** * * * ** * ** * Scer_spli: BBBBBBB BBBBBBB 360~480: Scer.....: actcgaataactat-----cttaatttacct----------gctgaaat-aatttgaaaaa---acacccgaggcagc-agacgaaaggtgt-ttttgctaaacaatgattgatttctgg Spar.....: catcgaataattacaagaacataactaactcgattcgcaaggcagcaag-catttaaaaaatagattttctgaccagt-aggggaaaagggtattctgtttatgaatga--aattgttcg Smik.....: attcgaaaaattataagaacataa-taactcagtttacttggaaaaaataaatttgggaaac--atattctggtcaatgaaaacaaatgaatactctgttcatca------gagtgct-- Sbay.....: aagaaaccgaccttgtcagcattgtatacct----------tcttga---aacttacagtctagtttttatacattat-agacaaaccgaatactatcttaacc---------ttgctg- consensus: * * * * ** * * ** * ** * * * * * * * * Spar_spli: BBBBBBB DDDDD 480~600: Scer.....: cgccatttctacattctgaacag--ttcatctcatttcagtaacagtacttcaatggaatatttattaaagaaagtgcttaaaaaagtatta-taaaacgatacatggactgactcaaga Spar.....: tcgccctctcacattctggacgggtatgttctcatttcagtagtgactcttccaaaaaatgtttgctcaagagggt-----------tatta-tataccgatatttgaatccacacatga Smik.....: -----tttccatgttctgg-tgtccttgtttttatttccatcacaattcttttatcacatactcgtcaaattaata-----------tttta-gatatcagaagaggtattcatacgaaa Sbay.....: -----cctcagcattattt-taatcctcttcgctatctagtaaaagagcctacgtgacacagccgattagggagta----------gtgttaccaaaacaggaacgatgtttatagacat consensus: ** * * * * * * * * * * *** * * * * * Spar_spli: D DDDDDD 600~720: Scer.....: ttgagctaataaggtccaccgcctag-tgcttaagagttctgtaccactataat-aatttatcttgatcgtattatgtgtaaaaaaaa---ggcgcttgaaatgaaagctccgaaaatta Spar.....: tcgaactaatataattcactacttagctgcttaaccattctttgccattataataaatgtatctcgatcgaatgctgcatagagaaaa----gcgcttaaaa-aagtgttccgaaatata Smik.....: ccaaattaataaggtgttctacttagctact------ctttcctcaataatact--gtttaattctataaaatgctgaaaaaaataaactacgcgcttaggaaagatgttctgaaatata Sbay.....: gtga--cgagacagtgcaatgtggag-tacc-atgaatccagcagcttcagggtcgctcctattctttca-gcgttgaattttggaca--agatgacccaattcccattttcgacgcgca consensus: * * * * ** * * * * * * * ** * * * * ** * 720~840: Scer.....: aaatactttgactgcttcggaaaacaaaa-acatataaataaatttaaaaaataaactgtaaaatatttaaaaactattaaaaatattttatatttttaaaattatttat-tattatgtc Spar.....: acatattttaaacgtttcggaaaccaaaa-acatatatttattatcttaaagtaatctaaaaaatg-aaagaaactttgatatatttaaaacataatataattattttat-aaaagtaac Smik.....: atatttttttatatcttcggaaagcaaaa-ac-tgtgttttcaagaacattattttctttttaaataaaaaaaaatatataaattattttatttcaaaaagattatatataaaatatatc Sbay.....: ------cacaataatttctgacaataaaacatatatttttggttcggaaatctcaaacaataaaaagtaaaaacaaacaaaacataagtaatttcttttaatttag-----aatattaaa consensus: * *** ** * **** * * * * * * ** * ** * * * * * * * * 840~960: Scer.....: atgtgacaagacttaaatcattacataaaaggttttgaagttcaatgtcaaagtcaatataataagcat-actaa-ggcacacttatgcaaatcgagttattgaagctggtaaaattata Spar.....: atgtgattaaactcaca--aagcctaaaaatgtttttaatcattatgttaagctgaatatagtatatct-aataattgtttatttaagcagattgaactgtgaatgctagtaaattttta Smik.....: atgtgacttaaatatca--ttttcacaaaagatttctttcaattattcagaatttattatggcatacat-aataatggcgtacaaatttttgatatactaccaattttatgaatggtatt Sbay.....: atattatttatattttatgaaacttcatcatgtgatcaggaagtaaagttgcttcattcaagagaatatcagtattcagcagtccacatatcctctttcgtctgtacaattacctccaca consensus: ** * * * * * * * * * * * * * ** * * 960~1080: Scer.....: agatttttatttttatttcttttatttct-gcaaatctgcattttcaaatac----cgcttggttttttgcatcataaagggcggcgctttcagtcgcgaaagt-gaaataaacaaccag Spar.....: agggtttt-ttgttgttctgcttttctct---agttttgtagtgtcaaatacaactaactggattttttgcatcagaagggg---cgctttaactcgcgaaagtaaaaataaacaattaa Smik.....: tcacctattaaagtatttttttcgcctttcttttattttcattatgatat------ggtttttctctatttttgggaaaggg---cgctttaaattgcgaattt-gaaataaacaatcaa Sbay.....: gcatgtatcataccatttgtgtagttcc----acacttgatggctcaaatgagg-ttactttttcctttacatgttgaagtg---cgcttcaaatcccgaagtcaaaaataaacaattag consensus: * * ** * * * * ** * * * * * * * ***** * * **** ********** * Spar_spli: BBBBBBB Sbay_spli: DDDDDD 1080~1200: Scer.....: tcaca------catataactttcttcttgccata-agaga--gaagaggacgtttggttgaagccaac--tagccacaagaaaaATGGTACTGACGATTTATCCTGACGAACTCGTACAA Spar.....: tcaca------catat-cttttcctcttgcagaa-gcaaa--gaagaggacggttgattgaagcaaac--cagccacagaaaatatggcgttgacaatttatcctgatgaactggttaaa Smik.....: tcacg------taaggtgatttctaggtaaagca-gaaaaaggaagaggcaagtttattggagcgaac--caggtggagtaactatggctttgacgatttatcctgatgaattggttaaa Sbay.....: tagcaaggaactgtgcacttttattgttgtaggacaaaaaaaagagataactgttgattgaaaggaacaaaaagcccaggaaatatgggttcgtcgatctatcctgatgaattggtgaaa consensus: * * *** * * * * *** ** *** * *** * * ** **** * * ** ******** *** * ** ** Sbay_spli: DDDDDD 1200~1320: total....: ====== ======= Scer.....: ATAGTGTCTGATAAAATTGCTTCAAATAAGGGAAGTATGTTCATGTCTCATTCTCCTTTTC--GGCTCCGTTTAGGTGATAAACGTACTATATTGTGAAAGATTATTTACTAACGA---- Spar.....: atagtgtctgatgaaattgcatcaaataaaggaagtatgtatatgcctcattcttctattccatgttcttttcaggtgagaaacgtgatatattgt--aagattatttactaacga---- Smik.....: attgtggctgatgaaattgcctcaaataagggaagtatgtctatgtctcattttttttgc---agtctttctctcgtgaggaatgttctattttgtaagagatcttttactaacta---- Sbay.....: ataatctcagacgaaattgcttcaaacaaaggcagtatgtatacgcttcatccccgctctat-tgcttccctcattcgagaagcatgctgtg-tgcaagaaagcctttactaactaaaat consensus: ** * * ** ******* ***** ** ** ******* * * **** * * ** * * * * ** * * ********* * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >===================================================================================== 1320~1440: Scer.....: CACATTGAAGAAATCACTTTGAATCAGCTGTGGGATATATCTGGTAAATATTTTGATTTGTCTGATAAAAAAGTTAAACAGTTCGTGCTTTCATGCGTGATATTGAAAAAGGACATTGAG Spar.....: cttattaaagaaattacgttaaatcagctttgggatatatctcgtaaatattttgatttgtctgacgagaaagttaaacaatttgtgctttcatgcgtgATGTTGAAAAAGGACATCGAG Smik.....: cttaccaaagaaatcacattgaaccagttatgggatatatctcgcaaatattttgatttgtcaaatgataaggttaaacaatttgtgctctcgtgcgtgattttgaaaaagggcatcgaa Sbay.....: tttgttaaagggatcacattaaactacttatgggatatctctcgtaaatattttgacttatccgatgataaggttaaacactttgtgctctcatgcataATGATGAAAAAGGACATCGAA consensus: *** ** ** ** ** * * ******** *** * *********** ** ** * * ** ******** ** ***** ** *** * ** ********* *** ** Scer_spli: DDDDDD known....: ========>= 1440~1560: total....: ======= Scer.....: GTGTATTGTGATGGTGCTATAACAACT---AAAAATGTGACTGATATTATAGGCGACGCTAATCATTCATACTCGGTTGGGATTACTGAGGACAGCCTATGGACATTATTAACGGGATAC Spar.....: GTGTACTGTGATAGCGTTATAACAACT---AAAAACGTGACAAATATTATAGACGACACTAGTCATTCATACTCAGTAGGGATTACTGAGGACAGCCTGTGGACGTTATTAACTGGATAC Smik.....: gtgtattgtgatgacgttataATGAATGAAAAAAAGGTGACAGATATTATAGATGATGTTGGTCACTCATACTCAGTCGGTATTACTGAGGATAGCCTTTGGATACTATTAACTGGATAT Sbay.....: GTGTATTGTGATAACGTTATGGTTACC---AAAAATGCGAAAGATATTATAAGTGACACTGATCAGTTATACTCTGTTGGAATCACTGAAGATAGCTTATGGACATTATTAACTGGGTAC consensus: ***** ****** * *** * ***** * ** ******** ** * *** * ****** ** ** ** ***** ** *** * **** ******* ** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1560~1680: Scer.....: ACAAAAAAGGAGTCAACTATTGGAAATTCTGCATTTGAACTACTTCTCGAAGTTGCCAAATCAGGAGAAAAAGGGATCAATACTATGGATTTGGCGCAGGTAACTGGGCAAGATCCTAGA Spar.....: ACAAAGAAGGAGTCAACTATCGGGAATTCAGCATTTGAACTACTTCTTGAAGTTGCCAAAGCTGGAGAAAAGGGGATCAATACTATGGATCTTGCACAGATAACTGGCCAAGATCCAAGA Smik.....: CCCAAAAAGGAATCAACAATCGGGAATTCAGCTTTTGAACTTCTTCTTGAAGTTGCCAAAGCAGGAGGGAAAGGGATCAACACAATGGATCTGGCCCATGTGACTGGTCAAGATCCTAGA Sbay.....: ACCAAGAAGGAATCAACTATTGGAAATTCAGCATTTGAGCTTTTACTTGAAGTTGCCAAAGCAGGAGAAAAAGGGATCAACACTATGGATCTCGCTCAAGTGACTGGCCAAGATCCTAGA consensus: * ** ***** ***** ** ** ***** ** ***** ** * ** ************ * **** ** ******** ** ****** * ** ** * ***** ******** *** 1680~1800: Scer.....: AGTGTGACTGGACGTATCAAGAAAATAAACCACCTGTTAACAAGTTCACAACTGATTTATAAGGGACACGTCGTGAAGCAATTGAAGCTAAAAAAATTCAGCCATGACGGGGTGGATAGT Spar.....: AGTGTAACAGGACGTATCAAGAAAATATGCCATCTCTTAACGAGCTCGCAACTGATTTACAAAGGACACGTCGTGAAGCTGTTAAAGCTAAAAAAATTTAGCCATGACGGGATAGATAGT Smik.....: AGTGTGACAGGACGTATCAAAAAAATAAACCACTTGTTAACGAGCTCGCAATTGATTTACAAAGGGCATGTTGTGAAACTATTAAAGCTCAAACGATATAGTCATGACGGGGCCGATAAT Sbay.....: AGTGTGACCGGCCGTATCAAAAAAATAAATCACTTACTTACCAGTTCACAATTGATTTACAAGGGTCATGTAGTAAAACTTTTAAAACTAAAAAAATTTAATCACGACGGGGGCGATGAT consensus: ***** ** ** ******** ****** ** * * ** ** ** *** ******* ** ** ** ** ** ** * ** ** ** *** ** * ** ****** *** * Smik_spli: DDDDDD 1800~1920: Scer.....: AATCCCTATATTAATATTAGGGATCATTTAGCAACAATAGTTGAGGTGGTAAAACGATCAAAAAATGGTATTCGCCAGATAATTGATTTAAAGCGTGAATTGAAATTTGACAAAGAGAAA Spar.....: AATCCCTATATTAACATTAGGGATCATTTGGCAACAATCGTTGAGGTGGTAAAACGATCGAAAAATGGTATTCGCCAGATAATTGATTTGAAGCGTGAACTGAAATTTGACAAAGAGAAA Smik.....: AATCCCTATATTAACATAAGAGACCATTTAGCAACAATCGTTGAAGTAGTAAAACGGTCTAAAAATGGTATTCGTCAGATAATTGATTTGAAACGTGAATTGAAGTTTGATAAAGAGAAA Sbay.....: AATCCCTATATTAACATCAGAGATCACTTGGCAACAATTGTTGAAGTAGTAAAGAGATCCAAAAATGGTATCCGCCAAATAATTGACCTGAAGCGTGAACTTAAATTTGATAAGGAGAAG consensus: ************** ** ** ** ** ** ******** ***** ** ***** * ** *********** ** ** ******** * ** ****** * ** ***** ** ***** Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1920~2040: Scer.....: AGACTTTCTAAAGCTTTTATTGCAGCTATTGCATGGTTAGATGAAAAGGAGTACTTAAAGAAAGTGCTTGTAGTATCACCCAAGAATCCTGCCATTAAAATCAGATGTGTAAAATACGTG Spar.....: AGGCTCTCAAAAGCTTTTATTGCAGCGATTGCATGGTTGGATGAAAAAGAGTACTTAAAGAAAGTGCTTGTAGTATCACCCAAGAATCCTGCCATTAAAATTAGATGCGTGAAATATGTG Smik.....: AGACTCTCTAAAGCCTTTATTGCAGCGATTGCATGGCTGGATGAAAAAGAATACTTAAAGAAAGTGCTTGTGGTGTCGCCAAAAAATCCTGCTGTTAAAATCAGATGTGTGAAATACATG Sbay.....: AGACTATCTAAAGCTTTCATTGCTGCGATTGCATGGTTGGACGAAAAAGAGTATTTAAAAAAAGTGCTTGTGGTGTCCCCAAAGAATCCTGCTATAAAAATCAGATGTGTGAAATACGTG consensus: ** ** ** ***** ** ***** ** ********* * ** ***** ** ** ***** *********** ** ** ** ** ******** * ***** ***** ** ***** ** 2040~2160: Scer.....: AAAGATATTCCAGACTCTAAAGGCTCGCCTTCATTTGAGTATGATAGCAATAGCGCGGATGAAGATTCTGTATCAGATAGCAAGGCAGCTTTCGAAGATGAAGACTTAGTCGAAGGTTTA Spar.....: AAAGACATTCCAGACTCTAAATGCTCGCCTTCATTTGAGTATGATAGTAATAGTGCGGATGAGGATTCTGTATCAGATAGTAAGGCAGGTTTGGAAGATGATGACTCAGTCGATGGTTTA Smik.....: AAAGACGTTCCAGATTCTAAAGGCTCACCTACGTTTGAGTATGATAGTAATAGTGCTGATGAGGATTCTGTATTAGACAACAAGGCAAGTTTGGAAGATGAAGACTCTGTTGAAGGTTTG Sbay.....: AAAGACATTCCAGATTCTAAAGGCTCTCCCACCTTTGAGTACGATAGCAATAGTGCAGATGAGGATTCTATATCAGACAACAAGACAGGCCTGGAAGATGAGGAATCTGTCGAAGGATTA consensus: ***** ******* ****** **** ** * ******** ***** ***** ** ***** ****** *** *** * *** ** * ******** ** * ** ** ** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2160~2280: Scer.....: GATAATTTCAATGCGACTGATTTATTACAAAATCAAGGCCTTGTTATGGAAGAGAAAGAGGATGCTGTAAAGAATGAAGTTCTTCTTAATCGATTTTATCCACTTCAAAATCAGACTTAT Spar.....: GATAATTTCAATGCAACTGATCTATTACAAAATCAAGGTCTCGTTATGGAAGACAAGGAGAATGCCGTAAAGAATGAAGTCCTTCTTAATCGATTCTATCCACTACAAAATCAGACTTAT Smik.....: GATAATTTCAATGCAACTGATCTATTGCAAAATCAAGGCCTTGTCGTTGAAGACAAAGAAAATGCTGTGAAGAATAAAGTCCTTCTTAATCGATTCTATCCATTGCAAAATCAGACTTAC Sbay.....: GATAATTTCAATGCGACTGATTTATTACAAAATCAGGGCCTAGTAATGGAAGACAAGGAGAGTGCCGAAAAAAATAGAGTTCTTCTCAATCGATTCTTTCCATTACAAAACCAGACGTAT consensus: ************** ****** **** ******** ** ** ** * ***** ** ** *** * ** *** *** ***** ******** * **** * ***** ***** ** Sbay_spli: DDDD 2280~2400: Scer.....: GACATTGCAGATAAGTCTGGCCTTAAAGGAATTTCAACTATGGATGTTGTAAATCGAATTACCGGAAAAGAATTTCAGCGAGCTTTTACCAAATCAAGCGAATATTATTTAGAAAGTGTG Spar.....: GACATTGCAGATAAGTCCGGCCTTAAAGGAATATCAACTATGGATGTTGTCAATCGAATTACCGGAAAAGAATTTCAGCGAGCTTTTACCAAATCAAGTGAGTACTATTTAGAAAGTCTG Smik.....: GATATTGCAGATAAGTCCGGTCTCAAAGGAATTTCAACTATGGATGTTGTTAATCGAGTAACAGGAAAGGAATTCCAGCGAGCTTTTACAAAATCAAGCGAGTACTATTTAGAAAGTCTA Sbay.....: GACATTGCAGATAAGTCCGGTCTTAAAGGAATTTCAACCATGGATGTCGTTAATCGGATTACCGGGAAAGAATTTCAGCGGGCTTTTACAAAGTCAAGTGAATATTACTTAGAAAGCCTA consensus: ** ************** ** ** ******** ***** ******** ** ***** * ** ** ** ***** ***** ******** ** ***** ** ** ** ******** * Spar_spli: DDDDDD Sbay_spli: DD 2400~2520: Scer.....: GATAAGCAAAAAGAAAATACAGGGGGGTATAGGCTTTTTCGCATATACGATTTTGAGGGAAAGAAGAAGTTTTTTAGGCTGTTCACAGCTCAGAACTTTCAAAAGTTAACAAATGCGGAA Spar.....: GATAGGCAAAAAGACAATACAGGAGGTTATAGGCTTTTCCGCATATATGATTTTGAGGGAAAAAAGAAGTTCTTTAGGTTGTTCACGGCTCAGAACTTTCAAAAGTTAACAAATGCGGAA Smik.....: GATAAACAAAAAGACAATATAGGCGGGTATAGACTTTTCCGCATATACGATTTTGAGGGAAAGAAAAAGTTCTTTAGGCTATTCACAGCTCACAACTTTCAAAAGTTGACAAATGCAGAA Sbay.....: GACAAACAGAAGGAAAACACAGGGGACTTCAGGCTTTTCCGCATATACGATTTTGAGGGAAAGAAGAAGTTTTTTAGGCTGTTTACAGCTCAAAACTTTCAAAAATTAACAAATGCAAAG consensus: ** * ** ** ** ** * *** * * ** ***** ******** ************** ** ***** ****** * ** ** ***** *********** ** ******** * Sbay_spli: BBBBBBB 2520~2640: Scer.....: GACGAAATATCCGTTCCAAAAGGGTTTGATGAGCTAGGCAAATCTCGTACCGATTTGAAAACTCTCAACGAGGATAATTTCGTCGCACTCAACAACACTGTTAGATTTACAACGGACAGC Spar.....: GACGAAATATCTGTTCCAAAAGGATTTGACGAACCAGGCAAATCTCATACTGATTTGAAAACTCTTAACGAGGATAATTTTGTCGCACTCAACAATACCGTTAGATTTACAAGGGATAGA Smik.....: GATCAAATATCTGTTACAGAAGGATTTGATGAACCAGGCAAATCACATACCGATTTGAAAACTCTTAACGAGAAAAATTTCGTGGCTCTCAATAATACTGTTAGATTCACAAAGGACAGT Sbay.....: GATGAAATATCTGTTGCAAAAGGGTTCGATGAACCGAGCAAGTCTGATTTGGACTTGAAGGCCCTTAATGAAGATAATTTTGTTCCACTGAATAATACGGTTAGATTCACCAAGAACAAC consensus: ** ******* *** ** **** ** ** ** * **** ** * ** ***** * ** ** ** * ***** ** * ** ** ** ** ******** ** * * * * 2640~2760: Scer.....: GATGGACAGGATATATTCTTCTGGCACGGTGAATTAAAAATTCCCCCAAACTCAAAAAAAACTCCGAATAAAAACAAACGGAAGAGGCAGGTTAAAAACAGTACTAATGCTTCTGTTGCA Spar.....: GATGGGCAAGATATATTCTTCTGGCACGGTGACTTGAAAATTCCTCCAAACTCCAAAAAAACTCCGAATAAAAACAAGCGGAAGAGGCAGGTTAAAAACACAACTGATGCTTCTGTTAAG Smik.....: GATGGCCATGATATATTTTTCTGGCACGGTGATTTGAAAATTCCGCTGAATTCGAAGAAAACTCCGAACAATAAAAAGCGGAAGAGGCAGACTAGAAACACTACTGATAATTCTGTGACG Sbay.....: GAACAGCAAGATGTATTCTTCTGGCACGGTGACTTGAAGATTCCACCAAATTTGAAAAAAATTCCTAATAAAAATAAGCGTAAGAGACAGGTTAAGGAAAATGCTACTAATTCTGTTGCA consensus: ** ** *** **** ************** ** ** ***** * ** * ** **** *** ** ** ** ** ** ***** *** ** * * ** * ****** Scer_spli: BBBBBBB Sbay_spli: BBBBBBB 2760~2880: Scer.....: GGAAACA---------TTTCGAATCCCAAAAGGATTAAGCTAGAGCAGCATGTCAGCACTGCACAGGAGCCGAAATCTGCTGAAGATAGTCCAAGTTCAAACGGAGGCACTGTTGTCAAA Spar.....: GGAAACG---------TTTCGACTCCCAAAAGGATTAAGCTCGAGCAACATGGCGGTGCCACGCAAGAGTCAAAAGCCACTGAAGATAGTCCAAGTTCGAATAGAGGTACCGTTATCAAA Smik.....: GTGAACAAT------GTCTCAACTCCAAAAAGGATTAAGCTCGAGCAACATGTTAGTACTGTGCAGGAGATAAAAGCTACAGAAGACAGCCCAATTTCAAACAGAAGTGGCACTGTCAAA Sbay.....: GAAAACAGTAGCATGGTTTCGACACCCAAAAGAATTAAGGTCGAGCACCATCTTGGCGCCAAGCAGGACGTGATAGGTACTGAAGATAGTCCAAGCTCTAGCAGAAAGGGCTTCGTAAAA consensus: * *** * ** * ** ***** ****** * ***** *** * * ** ** * * * ***** ** **** ** * ** * *** Scer_spli: DDDDDD 2880~3000: Scer.....: GGCAAGGTGGTTAACTTCGGCGGCTTTTCTGCCCGCTCTTTGCGTTCACTACAGAGACAGAGAGCCATTTTGAAAGTTATGAATACGATTGGTGGGGTAGCATACCTGAGAGAACAATTT Spar.....: GGCAAGGTGGTTAACTTCGGCGGCTTTTCTGCTCGCTCTTTACGTTCGCTACAGAGACAGCGAGCCATTTTGAAAGTTATGAATACGATTGGTGGGGTAGCATATCTGAGGGAACAATTT Smik.....: GGTAAGGTAGTTAACTTTGGTGGTTTTTCGGCCCGTTCTTTGCGTTCGTTACAAAGGCAGAGAGCAATCTTGAATGTTATGAATAAAATCGGTGGTGTAGCATACTTGAGGGAACAATTC Sbay.....: GGGAAGGTGGTCAACTTCGGCGGCTTTTCTGCTGGTTCTCTGCGCTCGCTACAAAGGCAGAGAGCAATCTTGAAAGTCATGGATGCAATTGGTGGAGTGGCGTACTTGAGAGAGCAGTTT consensus: ** ***** ** ***** ** ** ***** ** * *** * ** ** **** ** *** **** ** ***** ** *** ** ** ***** ** ** ** **** ** ** ** Smik_spli: DDDDDD 3000~3120: Scer.....: TACGAAAGCGTTTCTAAATATATGGGCTCCACAACGACATTAGATAAAAAGACTGTCCGTGGTGATGTTGATTTGATGGTAGAAAGCGAAAAATTAGGAGCCAGAACAGAGCCTGTATCA Spar.....: TATGAAAGCGTTTCCAAATGTATGGGCTCTGTAACGACATTGGATAAAAAGACTGTCCGCGGGGATGTTAACTTGATGGTAGAAAGCGAAAAATTAGGAGCAAGAACAGAGCCTGTATCA Smik.....: TATGATGTTGTTTCCAAGTTTATGGGCTCTGCAACAACATTGGATAAAAAGACTGTTCGGGGAGATGTTGACTTGATGGTAGAAAATCAAAAATTAGGAGCAAGAACAGAGCCTGCGTCA Sbay.....: TACGAAGATGTTTCCAAATATATGGGTTCTTCAACCACATTAGATAAAAAGACTGTCCGCGGAGATGTCGATTTAATGGTAGAAAATGATAAATTAGGTGCAAGAACAGAGTCGGTATCA consensus: ** ** ***** ** * ****** ** *** ***** ************** ** ** ***** * ** ********** * ******** ** ********* * * *** 3120~3240: Scer.....: GGAAGAAAAATTATTTTTTTGCCCACTGTTGGAGAGGACGCTATCCAAAGGTACATCCTGAAAGAAAAAGATAGTAAAAAAGCAACCTTTACTGATGTTATACATGATACGGAAATATAC Spar.....: GGAAGAAAAATCATTTTTCTGCCCACCATTGGGGAGGACGCTATCCAAAGCTACATCTTGAAAGAAAAAGATAGTAAAAAAGCAACCTTTACTGATGTAATACACGATACGGAAATATTC Smik.....: GGAAGAAAGATCATTTTTTTGCCCAGCATTGGAGAGGACGTTATTCAAACATACATTTTGAAAGAGAAAGATAGCAAGAAAGCAACCTATACCGATGTTATACATGATACGGATATATAC Sbay.....: GGGCGAAGAATCATTTTCCTCCCTAGCATTGGAGAGGATGTTATTCAAAGCTATATTTTGAGGGAAAAGGATAGCAAAAAAGCAACCTTTACTGATGTTATCCATGATACAGATATATTC consensus: ** *** ** ***** * ** * **** ***** * *** **** ** ** *** ** ** ***** ** ********** *** ***** ** ** ***** ** **** * 3240~3360: total....: ====== Scer.....: TTCTTTGACCAAACGGAAAAAAATAGGTTTCACAGAGGAAAGAAATCAGTTGAAAGAATTCGTAAGTTTCAGAACCGCCAAAAGAATGCTAAGATCAAAGCTTCAGATGACGCTATCTCT Spar.....: TTTTTTGATCAAACGGAGAAAAATAGATTTCATAGAGGAAAGAAGTCAGTTGAAAGAATTCGTAAGTTTCAGAACCGCCAAAAGAATGCAAAGCCTAAAGCTTCAGATGGGGCTACCTCT Smik.....: TTTTTTGACCAAACGGAAAGAAATAGATTTCATAGAGGGAAGAAATCTGTTGAAAGAATTCGTAAGTTTCAGAACCACCAAAAAAATGCAAAGACTAAAACTTCAGAACGGGTGAGCTCT Sbay.....: TTTTTTGACCAAACAGAAAAAAATAGGTTCCATAGAGGCAAGAAGTCAGTTGAGAGAATTCGTAAGTTCCAGAACCGCCAAAATAGTGCTAAATCTAAAGTTTCAAACGAGACTGCTCCT consensus: ** ***** ***** ** * ****** ** ** ***** ***** ** ***** ************** ******* ****** * *** ** *** **** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 3360~3480: total....: ====== Scer.....: AAGAAGAGTACGTCGGTCAACGTATCAGATGGAAAGATCAAAAGGAGAGACAAAAAAGTGTCTGCTGGTAGGACAACGGTGGTCGTGGAAAATACTAAAGAAGACAAAACTGTCTATCAT Spar.....: AAGAAGAGTATGTCAGTCAATGTATCAGACGGAAAGATCAAAAACAGAGACAAAAAATTGTCTGCCAGCAGGACACCAGCGGTTGTTGAAAATACTAAAGAAACCAAAACCATTTATCAT Smik.....: AAGAAAAACACATTAGTCGGTGTATCAGACGGAATCATTAAAAGCAGAGACAAAAAAACATCTGCGAGTAGAGCGCCGGTGGTTGTTGAAAATGATAAAGGAAGTAAGACAATCTATCAT Sbay.....: AAGAGAGGTATGTTAGCCATCTCATCAGATGATAACCGTAAGAGCAAAGACAAAAAGTCATCAGCGAGAAAAACGCCATTGGTCACTGAATCCAATAAGACAATCAAGACCATATATCAT consensus: **** * * * * ****** * * ** * * ********* ** ** * * * * *** *** *** * ** ** * ****** Scer_spli: DDDDDD Spar_spli: DDDDDDDDDD Sbay_spli: DDDDDD 3480~3600: Scer.....: GCAGGCACTAAAGATGGTGTTCAGGCTTTAATCAGAGCTGTTGTAGTTACTAAAAGTATTAAAAATGAAATAATGTGGGACAAAATAACAAAATTATTTCCTAATAATTCTTTAGATAAC Spar.....: GCAGGTACTAAGGATGGTGTTCAGGCTTTAATCAAAGCTGTTGTCATTACTAAAAGTATTAAAAACGAAATATTGTGGGACAAAATAACAAAATTATTTCCTAATAATTCTTTAGATAAT Smik.....: GCTGGTACTAAAGAAGGTGTTCAAGCCTTAATCAGAGCTGTTGTCATCACTAAAAGTATCAGAAACGAAATTGTGTGGAATGAAATAACAAAGTTGTTTCCTAATAACTCTTTAGATAAT Sbay.....: GCTGGCACTAAAGAAGGCGTTCAGGCCTTAATCAGAGCTGTTGTTATTACTAAAAGTATTAAAAACGAAATAGGCTGGGACGAGATAACGAAACTATTTCCTAATAACTCCCTAGATAAT consensus: ** ** ***** ** ** ***** ** ******* ********* * *********** * *** ***** *** * * ***** ** * *********** ** ******* 3600~3720: Scer.....: CTAAAAAAGAAATGGACGGCACGGCGAGTAAGAATGGGTCATAGTGGTTGGAGGGCATATGTCGATAAGTGGAAAAAAATGCTCGTTCTAGCCATTAAAAGTGAAAAGATTTCACTGAGG Spar.....: CTAAAAAAGAAATGGACAGCACGGCGAGTGAGAATGGGTCATAGCGGTTGGAGGGCGTATGTGGATAAGTGGAAAAAGGTGCTTGTTCTAGCCATAAAAGGTGAAAGAATTTCGTTGAAT Smik.....: CTAAAAAAGAAGTGGACAGCACGCCGAGTTAGAATGGGCCATAGTGGCTGGAGGGCATATATAGATAAGTGGAAAAAAATGCTTGTCCTAGCTATCAAAGCTGAAAGAATCTCATTGAAG Sbay.....: CTGAAAAAGAAATGGACAGCTCGCAGAGTGAGAATGGGCCATAGCGGTTGGAGAGCTTATGTAGACAAGTGGAAAAAAATGCTTGTTTTAGCAATTAAAGGTGAAAGGATTTTGTTGAGG consensus: ** ******** ***** ** ** **** ******** ***** ** ***** ** *** * ** *********** **** ** **** ** *** ***** ** * *** Spar_spli: DDDDDD 3720~3840: Scer.....: GATGTTGAAGAACTAGATCTTATCAAATTGCTTGATATTTGGACCTCTTTTGATGAAAAGGAAATAAAAAGGCCGCTCTTTCTTTATAAGAACTACGAAGAGAATAGAAAAAAATTTACT Spar.....: GATGTTGAAGAACTAGATCTTATTAAATTGCTTGACATTTGGACCTCATTTGATGAGAAAGAAATTAAGAGGTCGCTCTATCTTTATAAGAACTATGAAGAGAATAGGAAAAGATTCACT Smik.....: GATGTTGAAGAACTAGATCTCCCTAAATTGCTCGACATTTGGACGTCATTTGATGAGAAAGAAATAAAGAAATCATTATATCTTTATAAGAACTATGAGGAGAATAGGAAAAGACTCACT Sbay.....: GATGTAGAGGAACTAGACCTTTCTAAATTGCTTGGCATTTGGGCCTCCTTTGATGAGAAAGAGGTAAAGAGATCGCTCTACCTTTATAAGAGCCATGAGGAGAATAGGAAGAAATTCACT consensus: ***** ** ******** ** ******** * ****** * ** ******** ** ** * ** * * * * ********** * * ** ******** ** * * * *** 3840~3960: Scer.....: CTGGTACGTGATGACACACTTACACATTCTGGCAACGATCTGGCCATGTCTTCTATGATTCAAAGAGAGATCTCTTCTTTAAAAAAAACTTACACTAGAAAGATTTCCGCTTCTACT--- Spar.....: TTGGTCCGTGACGATACATTACCACATTCTACCAATGATCTGGCCATGTCTTCTATGATTCAAAGAGAGATTTCTTCGTTAAAAAAAACTTACACTAAAAGGATTTCCGGTTTTACG--- Smik.....: CTTATTCGTGACGATACATTGGTACAGTCTAACAATGATCTGGCTATGTCTTCAATGATTCAAAGAGAGATTTCTTCACTAAAGAAGACTTACACTAGAAGGGTTTCCAGTTTTACT--- Sbay.....: TTAATCCGTGACGATGTATCGGTACATTCTAACAATGATCTTGCTATGTCGTCTATGATTCAAAGAGAGATATCCTCTTTGAAAAAAACTTACACAAAAACGGTTTCTAGCTTTACTCCC consensus: * * ***** ** * *** *** *** ***** ** ***** ** ***************** ** ** * ** ** ******** * ** * **** * *** Scer_spli: DDDDDD 3960~4080: Scer.....: AAGGACTTATCGAAGAGTCAAAGCGACGATTATATTCGCACAGTGATCCGGTCCATATTAATAGAAAGTCCTTCGACCACTAGAAATGAAATAGAGGCGTTGAAGAACGTTGGAAACGAA Spar.....: AAGGACTTATCGAAAAGTCAAAGCGACGATTATATCCGTACAGTGATCCGGTCTATATTAATAGAAAATTCTTCGACTACTCGAAATGAAATAGAGGCGTTGAAGAATGTTGGAAAGGAA Smik.....: AAAGACTCAGGGAAGATTCAAAGCGACGATTATATCCGTACAGTGATTCGGTCGATTCTAATTGAAAACTCTTCGATTACTCGAAATGAAATAGAGGCATTGAAGAATGTAGGAAAAGAG Sbay.....: GGAGACACTACGAAGATCCGAAGTGACGATTACATTCGTACAGTGATTCGGTCAATTTTAGTCGACAATTCTTCGACTGCTAGAAATGAAATAGAAGCTTTGAAAGATGTCGAAAAGGAA consensus: *** *** * * *** ******** ** ** ******** ***** ** ** * ** * ****** ** ************* ** ***** * ** * *** ** 4080~4200: Scer.....: TCAATAGATAACGTCATCATGGATATGGCTAAGGAAAAGCAAATTTATCTCCATGGCTCAAAACTTGAATGTACTGATACTTTACCAGACATTTTGGAAAATAGAGGAAATTATAAAGAT Spar.....: TCAATAGATAATGTCATCATGGATATGGCTAAGGAAAAGCAAATTTACCTTCATGGTTCAAAACTTGAATGTACCGATACTTTACCAGACATTTTAGAAAGTAGAGGAAACTATAAAGAT Smik.....: TCAATAGATAATGTTATTATGGATATGGCTAGAGAGAAGCAAGTTTATCTGCATGGTGCAAAACTTGAATGTACTGACACACTACTAGACATTTTGAAAAGTAAAGGAAACTACAAAGAC Sbay.....: TCGATAGATAATGTCATTATGGACATGGCTAAGGAGAAGCAGGTCTACCTCCATGGTTCCAGACTTGAATGCACAAATACACTGCCGGAAGTTCTAGAAAGTAAAGGAAACTACAAAGAT consensus: ** ******** ** ** ***** ******* ** ***** * ** ** ***** * * ********* ** * ** * * ** ** * *** ** ****** ** ***** 4200~4320: Scer.....: TTTGGTGTAGCTTTTCAGTATAGATGTAAGGTTAATGAATTATTGGAGGCCGGAAACGCTATTGTTATCAATCAAGAGCCGTCCGATATATCCTCTTGGGTTTTAATTGATTTGATTTCG Spar.....: TTCGGAGTAGCTTTGCAGTATAGATGTAAGATTAATGAGTTATTGGAGGCCGGAAACGCTATTGTCATTAATCAAGAACCGTCCGACATATCCTCCTGGGTTCTGATTGATTTGATTTCG Smik.....: TTCGAACTTGCTTTTCAATATAGAACTAAGATTAATGAGCTATTGGAGGTTGGAAACGCCATTGTTATTAACCAAGAACCATCCGACATATCTTCATGGGTATTAGTTGATTTGGTTTCT Sbay.....: TTCGAAGTTGCTTTACAATATAGGACTAAGGTTAATGAATTGCTTGAAGCGGGAAATGGTATTGTCATTGATCAAGAACCGTCTGACATATCCTCCTGGATATTGATTGATCTGATTTCT consensus: ** * * ***** ** ***** **** ******* * * ** * ***** * ***** ** * ***** ** ** ** ***** ** *** * * ***** ** **** Smik_spli: BBBBBBB 4320~4440: Scer.....: GGAGAGCTATTGAATATGGATGTAATTCCAATGGTGAGAAATGTTCGACCTTTAACGTATACTTCAAGGAGATTTGAAATACGAACATTAACTCCCCCTCTGATTATATATGCCAATTCT Spar.....: GGCGAGCTATTAAATATGGATGTAATTCCAATGATGAGGAACGTTCGGCCATTAACTTATACCTCAAGAAGATTTGAAATAAGAACATTAACTCCACCTTTGATTATATATGCCAAATCT Smik.....: TCTGAGTTATTGAGCATGAATATAATACCAATGATGAGAAACGTTCGGCCATTGACTTATACTTCAAGAAGATTTGAAATAAGAACCCTAACTCCACCTTTAATTATATATTCCAAATTT Sbay.....: AACGGCCTATTAAATATAAATATAATACCAATGATGAGGAATGTACGACCATTAACTTATACTTCGAGAAGATTTGAAATCGGGACACTTACCCCCACTTTGATTACATATGCTAAATCT consensus: * **** * ** ** **** ****** **** ** ** ** ** ** ** ***** ** ** *********** * ** * ** ** ** * **** **** * ** * * 4440~4560: Scer.....: CAGACAAAATTGAATACAGCAAGGAAGTCTGCTGTCAAAGTTCCACTGGGCAAACCATTTTCTCGTTTATGGGTGAATGGATCTGGTTCCATTAGGCCAAACATATGGAAGCAGGTAGTT Spar.....: CAGAGAAAGTGGAATACACCAAAAAATTCGGCTGTCAAGATCCCACTTGGCAAACCATTTTCGCGTTTATGGGTGGATGGATCTGGTTCCATTAGGTCAAACATATGGAAACAAGTAGTT Smik.....: CAATCAAAATTGAACAAGCCAAAACAATCTGCTGTCCATATTCCGCTTGGAAAGCCCTTTTCCCGTTTGTGGGTTGATGGATATGGTTCCATTAGACCAAATATATGGAAGCAAGTAGTT Sbay.....: CAGGCTAAGCTGAACACACCGGATAAATCGATAGTCAAGATTCCACTTGGCAAGCCATTTTCTCGTTTATGGGTGGACGGTGCTGGGGCCATTAGGCCAAAAATATGGAAGCAGGTTGTT consensus: ** ** *** * * * ** *** * * ** ** ** ** ** ***** ***** ***** * ** *** ******* **** ******** ** ** *** 4560~4680: Scer.....: ACTATGGTCGTTAACGAAATAATATTTCATCCAGGGATAACATTGAGTAGATTGCAATCTAGGTGTCGTGAAGTACTTTCGCTTCATGAAATATCAGAAATATGCAAATGGCTCCTAGAA Spar.....: ACTATGGTCGTTAATGAGGTAAAATTTCATCCAGGGATAACGTTAAGTAGACTGCAATTTAGATGCCATGAAGTGCTTTCGCTCCATGAAATATCGGAAATATGTAGATGGCTCCTAGAA Smik.....: ACTATGGTCGTCAATGAAATACAATTTCATCCAGGAATAACCCTGAGCAGGTTGCACTTTAAATGCCGTGAAGTACTTTCGCTCCAAGAAATTTCTGAAATATGCAAGTGGCTCCTAGAA Sbay.....: ACTATGGTCGTTAATGAAGTGAAATTTCATCCAGGAATAACGTTAAATAGGCTACAAGTTAGATGCCGTGACGTACTTTCCCTCGATGAAATATCAGAAATATGTGACTGGCTTCTAAAG consensus: *********** ** ** * ************ ***** * * ** * ** ** ** * *** ** ***** ** * ***** ** ******** ***** *** * Spar_spli: DDDDDD 4680~4800: Scer.....: AGACAAGTATTAATAACTACTGATTTTGATGGCTATTGGGTCAATCATAATTGGTATTCTATATATGAATCTACATAAtgaaatgaggtgtata-aattttacttttatgtaaccaaagt Spar.....: AGACAAGTATTAATGAATACGGATTTTAATGGCTTCTGGGTTAACCATAATTGGTATTCTATATTTGAGTTTACTTAAttataggaggaatata-aattttacttttatgtaacgaaagc Smik.....: AGACAAGTTTTAATGAATATGGGCTTTAGTGGTTTCTGGGTTAACCATAACTGGTATTCTCTGTTTGAGTTTACGTAActaaaataaagtcatgtaattttacttttatgtaaggaaaac Sbay.....: AGACAAGTACTGATGAACATGAAATATGAGGGGTTTTGGGTAGATCATAGTTGGTATTCTATATTTTAAtctttataactaa---tgatgtgtaattttttacttttatgtaataaaact consensus: ******** * ** * * * * ** * ***** * **** ********* * * * * * * *** * * **************** *** 4800~4838: Scer.....: tgtattaaata------tttagaaatg----------- Spar.....: tgtattatata------tttagaaaaggttatg----- Smik.....: tgcattaaata---------aaaaaggtata------- Sbay.....: tgtattaaataaagatctacaaaaaaggtaatatttac consensus: ** **** *** * *** * { alias......: ['EFB1', 'TEF5'] chromosome.: 1 description: Translation elongation factor EF-1beta, GDP/GTP exchange factor for Tef1p/Tef2p end........: 143158 exons......: [(1, 80), (447, 987)] gene.......: EFB1 introns....: [(81, 446)] length.....: 987 name.......: YAL003W plength....: 329 start......: 142172 tdist......: 87045 type.......: ORF up.........: 1 } Scer: 2 donors and 5 branches Spar: 1 donors and 4 branches Smik: 2 donors and 5 branches Sbay: 3 donors and 5 branches INTRON SPLICING FOUND!! [ ->[('Scer', 866), ('Spar', 866), ('Smik', 866), ('Sbay', 866)] ->[('Scer', 2207), ('Smik', 2207)] ->[('Sbay', 926)] ->[('Sbay', 2316)] ] [ ->[('Scer', 1199), ('Spar', 1199), ('Smik', 1199), ('Sbay', 1198)] ->[('Scer', 1669), ('Spar', 1669), ('Smik', 1669), ('Sbay', 1669)] ->[('Scer', 1961), ('Spar', 1961), ('Smik', 1961), ('Sbay', 1961)] ->[('Scer', 1582), ('Spar', 1582)] ->[('Scer', 1809), ('Smik', 1809)] ->[('Sbay', 124)] ->[('Sbay', 1717)] ->[('Smik', 64)] ] 0~120: Scer.....: attat-ctgttatttacttgaatttttgttt-cttgtaatacttgattacttttctttt-gatgtgcttatcttacaaat-agagaaaataaaacaacttaagtaagaattgggaaa--- Spar.....: attatattattaattatttgaattcttgttt-cttgtaatgcttgattacttttctctt-gatgtacttattttacaaatgaggaaaaataaaacaattaagataagagttgagaaa--- Smik.....: atttttctattgtttatttatattcttattttcttgtaatacttgattacttttcttct-gatgtactaatcttacaaat--gaggaaagaaagaaactaatacatgagtagagagagat Sbay.....: gttatatt--tagttatttgggttcttgttt-cttgtaatacgaaattacttttttttttgatgtgcttatttcacaaag-------gggaaaataactgagacaga------------- consensus: ** * * * *** ** ** ** *** ******** * ********* * * ***** ** ** * ***** *** ** * * * Smik_spli: BBBBBBB 120~240: Scer.....: -cgaaactacaactcaatcccttctcgaagata-catcaatccaccccttatataaccttgaagtcctcgaaacgatcagctaatctaaatgg-ccccccttctttttgggttctttctc Spar.....: -cgaa-ctataactcaatcccttctcgaagaca-catcaatctaccccttatataaccttgaggtcctcgaaacgatcagccaatctaaatgggccccccttctttttgggttctttctc Smik.....: acgaaaccacaactcaatctattctcgaagacaacattgacctaccccttatataaccttgacgtcctcgaaacgatcagctaatctaaatgg-ccccccttctttttgggttctttttc Sbay.....: -caaaattaacactcaattcatcctcgacaacagaacgaacctgccccttatataacgttgagtttctcgaaaccatcacctaatctaactgg--cccccttcttttgggctcttttgtc consensus: * ** * ******* * ***** * * * * * ************* **** * ******** **** * ******* *** ************ ** * *** ** Sbay_spli: BBBBBBB 240~360: Scer.....: tcccttttgccgccgatggaacgttctggaaaaagaagaataatttaattactttctcaactaaaatctggagaaaaaacgcaaatgacagcttctaaacgttccgtgt-gctttctttc Spar.....: tcccttttgccgccgatggaacgttctggaaaaagaagaataaattaat-gcttcctcgactaaaatctggagaaaaaacgcagatgacatcttcaaaatgttcca-ga-ggtttctttc Smik.....: tcccttttgccgccgatggaacgttctagaaaaaga---atgatttatt-actttctcaaccaaaatctggagaagaa-cgctaattacatctccaaaatgttctctgttattttccttc Sbay.....: tcccttttgccgccgatggaacgttctagaaaaata---ataactcg-----ttctgcagctaaaacctggagaaaaaaactacatggcatcttgaaaatacctttttttcttttctttc consensus: *************************** ****** * ** * * ** * * **** ******** ** ** ** ** *** **** *** 360~480: Scer.....: tagaatgttctggaaag-ttt-----------acaacaa---tccacaagaa-cgaaaa------tgccgttgacaatgatgaaaccatcatccacacaccgcgcacacgtgctttattt Spar.....: tagaaagttctggaaagcttt-----------acaagac---tccgcaagaaatgaaaaaaaatacaccgtcggtaatgatgaaaatatcatccacacaccacgcacacgtgtttcattt Smik.....: tagaacattctagaata-ttg-----------gcaagaaacgtctctcaggaatgaaaaa-----catcgtttatagtgatagta-tatcatccacacaccacacgtacgcgttttattt Sbay.....: tagaacattctagaaaaactagaaaagaagaaagaaaaaaaaaaagcaagggacagaacaaacacttccgtccagagtgaccagt---gaatccagacaccacacacacgtgccccgttt consensus: ***** **** *** * ** * ** ** *** * *** ***** ***** * * *** * *** 480~600: Scer.....: ctttttctgaattttttttttccgccattttcaaccaaggaaattttttttcttagggctcagaacctgcaggtgaagaagcgctttagaaatcaaagcacaacgtaacaattt-gtcga Spar.....: ctttttctgggtttttctttccaccatttttcaactaaggaaattttttttcttagggctcagaacctgcaggtgaagaaacgcggtagaaatcaaagcacaacgcaataattt-gtcga Smik.....: ctttttctggttttttttcatctgccatttttcaccaaagat-ttttttttcttagggctcagaacctgcaggtgaagaaacgcagtagagatcaaagtacaacgcaataattt-gtcga Sbay.....: ctttttcctgatctggtttttccgccaattttcaccaaaacgtttttttttcttagggctcggcacctgcaggtgaaagaacgcggtagaaatcgaagcacaacgcaatattttcgtcca consensus: ******* * * * * * *** ** ** ****************** * ************* * *** **** *** *** ****** ** * *** *** * 600~720: Scer.....: caaccgagcctttgaagaaaaaatttttcacattgtcgcctct----aaataaatagtttaaggttatctacccactatatttagttggttcttttttttttccttctactctttatctt Spar.....: caaccgagcctttgaagaaaaaaattttcacattgtcgtctct----aaataaatagtttaaggttatctatccactatatttagtcgcttctttttttttttcttctgctcttcatcct Smik.....: caaccgagcctttgaagaaaaaaattttcacattgtcgcctct----gaataaatagtttaaggttatc----cactatatttagtcg---cacatttttcttcttccacttcttatctc Sbay.....: aaaccgagagtttgaagaaaaaaattttcacattgtcgtctctgagtaaataaatagtttaaggttagc----cactatatttagtggg---ctcttttatttcttctactctttatctt consensus: ******* ************* ************** **** ******************* * ************* * **** * **** ** * *** 720~840: Scer.....: tttacctcatgct--ttctacctttcagca--ctgaagagtccaaccgaatatata--cacacataATGGCATCCACCGATTTCTCCAAGATTGAAACTTTGAAACAATTAAACGCTTCT Spar.....: tt-acctcatgct--tcctaccttttagct--ctgaagagtccaaccgaatatata--tacacataatggcatccaacgatttctccaagattgaaactttgaaacaattaaacgcttct Smik.....: tt-actttgtttta-ttctacctttcagca--ctgaagagcccaaccgaatataca--caaacataatggcatccaccgatttctccaagattgaaactttgaaacaactaaacgcttct Sbay.....: cg--tcttacgcttcttcttctcttcaactgtttgaacagtccaaccgaatatatatacacacacaatggcttccaccgatttctccaagattgaaactttgaaacaattaaacgcttct consensus: * * * ** * ** * * **** ** ************* * * *** ****** **** ******************************* *********** 840~960: total....: ====== Scer.....: TTGGCTGACAAGTCATACATTGAAGGGTATGTTCCGATTTAG-TTTACTTTATAGATCGTTGTTTTTCTTTCTTTTTTTTTTTTCC-TATGGTTACATGTAAAGGGAAGTTAACTAATAA Spar.....: ttggctgacaagtcatacattgaagggtatgttccgatttag-tttagtttatagattattgttttt---tctctttcttctttcc-tatgatgccatgtaaagggaagataactaataa Smik.....: ttggctgacaagtcatacattgaagggtatgttccgatttat-ttttgtttatagattattgttttt--tctttttcttcttttcc-tgtgatgccatgtaaagggaagatagttaataa Sbay.....: ttggctgacaagtcatacattgaagggtatgttccgatttagctttattttatagattgttgcttttctctttatttttcttttccgtatgatttcatgcgaaggaaagataactggtaa consensus: ***************************************** *** ********* *** **** * ** * ***** * ** * **** **** *** ** * *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD known....: >============================================================================================= 960~1080: Scer.....: TGATTACTTTTTTT-CGCTTATGTGAATGATGAATTTAATTCTTTGGTCCGTGTTTATGATGGGAAGTAAGACCCCCGATATGAGTGACAAAAGAGATGTGGTTGACTATCACAGTATCT Spar.....: tgattgcttttttttcgcttatgtgaatgatgaatttaattctttggtccgtgtttatgatgggaagtaagacccccgatatgagtgacaaaagagatgtggttgactatcacagtatct Smik.....: tgattacgtttttt-cgcttatgtgaatgatgaatttaattctttggtccgtgtttatgatgggaagtaagacccccgatatgagtgacaaaagaaatgtggttgactatcacagtgtct Sbay.....: tgattacgtttccc--gcttatgtgaatgatgaatttaattctttggtccgtgtttatgatgggaagtaagacccccgatatgagtgacaaaagagatgtggttgactatcacagtatct consensus: ***** * *** ******************************************************************************* ******************** *** known....: ======================================================================================================================== 1080~1200: total....: = Scer.....: GACGATAGCACAGAGCAGAGTATCATTATTAGTTATCTGTTATTTTTTTTTCCTTTTTTGTTCAAAAAAAGAAAGACAGAGTCTA-AAGATTGCATTACAA--G-AAAAAAGTTCTCATT Spar.....: gacgatagcacagagcagagtatcgttattagttatctgttattttttttcccttatc-gtttagaaaaagaaaggcagagtcta-aagattatatttcag--ggaaaaaagtgttcatt Smik.....: gacgatagcacaaaacagagtgtcattattagttatccgttattct-----cccttttcctctagagaaagataggcagagtctttaaggttatattgcaatggaaaaaaagcgcacatt Sbay.....: gacgatagcacaaagcaacgtaacattagtggttatttgttttcct-----------tcctctagagaaag-----cattatctt--tttttcttttttttttgtaaggaaccattcat- consensus: ************ * ** ** * *** * ***** *** * * * * * **** ** *** ** ** * ** ** *** Scer_spli: B Spar_spli: B Smik_spli: B Sbay_spli: BB known....: ======================================================================================================================== 1200~1320: total....: ====== Scer.....: ACTAACAAGCAAAATGTTTTGTTTCTCCTTTT-AAAATAGTACTGCTGTTTCTCAAGCTGACGTCACTGTCTTCAAGGCTTTCCAATCTGCTTACCCAGAATTCTCCAGATGGTTCAACC Spar.....: actaacaagcaaaatgttttgtttctcctttt-aaaatagtactgctgtttctcaagctgacgtcactgtcttcaaggctttccaatctgcttacccagaattctccagatggttcaacc Smik.....: actaacaagcaaaatgtttcttttctcttttttgaaatagtactgctgcttctcaagctgacgtcactgtcttcaaggctttccaatctgcttacccagaattctccagatggttcaacc Sbay.....: actaacaagcaaaaactttttgttttatt----gaaatagtactgctgtctctcaagctgacgttgccgtcttcaaggctttccaatctgcttacccagaattctccagatggttcaacc consensus: ************** *** ** * * ************** ************** * **************************************************** Scer_spli: BBBBBB Spar_spli: BBBBBB Smik_spli: BBBBBB Sbay_spli: BBBBBB known....: ======================================>= 1320~1440: Scer.....: ACATCGCTTCCAAGGCCGATGAATTCGACTCTTTCCCAGCTGCCTCTGCTGCCGCTGCCGAAGAAGAAGA---AGATGACGATGTCGATTTATTCGGTTCCGACGATGAAGAAGCTGACG Spar.....: acatcgcttccaaggccgatgaattcgactctttcccagctgcctctgctgccgctgctgaagaagaaga---tgacgatgacgtcgatttattcggttccgacgatgaagaagctgatg Smik.....: acattgcttccaaggccgatgaattcgaatctttcccagctgcctctgctgccgttgctgaagaagaaga---tgatgatgacgtcgatttattcggttccgacgatgaagaagctgatg Sbay.....: acattgcttccaaggccgatgaattcgaatctttcccagctgcctccgccgccgctgctgaagaagaagaagatgacgatgatgtcgatctattcggttccgacgatgaagaagctgacg consensus: **** *********************** ***************** ** **** *** *********** ** ** ** ****** **************************** * 1440~1560: Scer.....: CTGAAGCTGAAAAGTTGAAGGCTGAAAGAATTGCCGCATACAACGCTAAGAAGGCTGCTAAGCCAGCTAAGCCAGCTGCTAAGTCCATTGTCACTCTAGATGTCAAGCCATGGGATGATG Spar.....: ctgaagctgaaaagttgaaggctgaaagaatcgctgcatacaacgctaagaaggctgctaagccagctaagccagctgctaagtccattgtcactctagatgtcaagccatgggatgacg Smik.....: cagaagctgaaaagttgaaggctgaaagaatcgccgcatacaacgctaagaaggctgccaagccagctaagccagctgctaagtccattgtcactattgatgtcaagccatgggatgatg Sbay.....: ctgctgctgaaaagttaaaggctgaaagaatcgccgcatacaacgctaagaaggctgctaagccagctaagccagctgctaagtctatcgtcactttggacgtcaagccatgggacgatg consensus: * * *********** ************** ** *********************** ************************** ** ****** * ** ************** ** * 1560~1680: total....: ======= Scer.....: AAACCAATTTGGAAGAAATGGTTGCTAACGTCAAGGCCATCGAAATGGAAGGTTTGACCTGGGGTGCTCACCAATTTATCCCAATTGGTTTCGGTATCAAGAAGTTGCAAATTAACTGTG Spar.....: aaaccgatttggaagaaATGGTTGCTAACGTCAAGGCCATCGAAATGGATGGTTTGACTTGGGGTGCTCACCAATTTATCCCAATTGGTTTCGGTATCAAGAAGTTGCAAATTAACTGTG Smik.....: aaactaatttggaagaaATGGTTGCTTTCGTCAAGGGTATCGAAATGGATGGTTTGAACTGGGGTGCTCACCAATTCATCCCAATTGGTTTCGGTATCAAGAAGTTGCAAATTAACTGTG Sbay.....: aaaccgacttggaagaaATGGTCGCCACCGTCAAGGCCATCACCATGGAAGGTTTGACCTGGGGTGCTCACCAATTCATCCCAATTGGTTTCGGTATCAAGAAATTGCAAATTAACTGTG consensus: **** * ************** ** ******** *** ***** ******* ***************** ************************** **************** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1680~1800: Scer.....: TTGTCGAAGATGACAAGGTTTCCTTGGATGACTTGCAACAAAGCATTGAAGAAGACGAAGACCACGTCCAATCTACCGATATTGCTGCTATGCAAAAATTATAAaaggctttttt-ataa Spar.....: TCGTCGAAGATGCCAAGGTTTCTTTGGAGGACTTGCAACAAAATATCGAAGACGACGAAGACCACGTCCAATCTACCGATATTGCTGCTATGCAAAAATTATAAaaagctttttttataa Smik.....: TTGTCGAAGATGACAAGGTTTCCCTGGATGACTTGCAACAAAGCATTGAAGAAGACGAAGACCACGTCCAATCTACCGATATTGCTGCTATGCAAAAATTATAAgaagctttttctataa Sbay.....: TTGTCGAAGATGACAAGGTTTCTTTGGAAGACTTGCAAACTAACATCGAAGAAGATGAAGACCACGTCCAATCTACCGATATTGCTGCTATGCAAAAATTATAAgaagctttttctataa consensus: * ********** ********* **** ********* * ** ***** ** ************************************************ * ******* **** Sbay_spli: BBBBBBB 1800~1920: Scer.....: actttttataatt----aacattaa-------agcaaaaacaacattgtaaagattaacaaa-taaatgaaaaaaa-caacgaaataacttaggttttaggctaaaaaaaacagaaggaa Spar.....: actttttataata----aacatcaa-------agcaaaaacaacattgtaaagattaacaaa-taaatgaaaaaa--caacgaaataacttaggttttaggctaaaaaaa-cagaaggaa Smik.....: actttttataatt----aacatcgacaaaaacgacaacaacaacattgtaaagattaacaaaataaatgaaaaaagaaaacgaaataacttaggttttaggctaaagaaaacagaaggaa Sbay.....: actttttataacttagcaacaacaacaacaacaacatcaacaacattgtaaagattaacaaa-taaatgaaaaaaacgaaataactcactcaggttttaggctacagaaact----gaaa consensus: *********** **** * ** ************************ ************ ** ** * *** ************* * *** * ** Scer_spli: BBBBBBBBBBB Smik_spli: BBBBBBBBBBB 1920~2040: total....: ======= Scer.....: ttttgaacgataaactttt-cgactgcacacgaaacattattactaatttgtgtaaccactatataaggaatcgtgtttattaattgaatttattccgggaatattcaagttatgtatat Spar.....: ttttgaacgataaactttt-cgactgcacgcgaaacattattactaatttgtgtaaccactatataaggaatcgtgtttattaattgaatttattccgggaatattcaagttatgtatct Smik.....: ttttgaatgatatattttt-ctactgcacgagaaacattattactaatttgtgtaaccactatataagaaatcgtgtttattaaatgaatttattccgggaatattcatgccatctatct Sbay.....: ttttaaatgataaattttttcgaccgcacgcgagatgctcttactaatttgtgtaaccactatataaagaatcgtgtttattaattgaatttattccgggaatattcatgctgtataatc consensus: **** ** **** * **** * ** **** ** * * *************************** *************** *********************** * * ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 2040~2160: Scer.....: c----tcttttcatattcttaaatacacat-actcataatatcttgtcgaaaatacgcg--gtgtagggagttatggtggataactttttcacgattagaagaaaaggaaaatttcatta Spar.....: a----tcttttcatattcttaaatacacat-acacatactatcttgccaaaaacacacgtggtgtaaggagttatggtg-acagctttttcacgattagaagaaaaa------ctcatta Smik.....: agtaatatcttcatattct-aattttatatgagctatattagcttggcaaaaaagtgcg--gtgtaaggagttcttgtaggtagcattttcgcggttaaaagaaaaggaaaaattcatta Sbay.....: t------tcttaatattcttatatatactt-------aatctcttgc--aaaatatgcg--gtgtaaggagttcttt---gcggcttacttaccatcaaaaaaatat------ctcatga consensus: * ** ******* * * * * * * **** **** ** ***** ****** * * * * * * * ** ** * **** * 2160~2280: Scer.....: ttcgtagcttaac-atggcaaaaacgagaaagacatataatcaaaacgt-gagtttcctgtgg----aaaaaaaaaaaagggaacctctggttacgatgatatacctgcgtgaaaaagga Spar.....: ttcgtagcttaat-atggcaaaaatgagaaagacatactatcaaaacat-aagtttcctg--------agaaaaaaaaagggaacctct--ttacaatggtacacctgtgtaaacaagta Smik.....: ttcgtagcttaat-atggcaa--atgagaaagatata--attataacgt-aagtttcttg-------aagaaaaaaaaagggaaccttc--ttacaatgatatatctgtgtaaataagca Sbay.....: tttgtagtttaattatggcaa-----agaaagccatggcattaaaaattgaagattcttgaagaagaaaaaaaaaaaaagggaacctct--cgatcatggtaaacctgtgcaaataagtg consensus: ** **** **** ******* ****** ** ** * ** * ** *** ** * ***************** * *** ** * *** * ** *** Scer_spli: DDDDDDD Smik_spli: DDDDDDD 2280~2400: Scer.....: cagttattac------caatacatacaaa-ggcttaataagtgtaaaatatatatctgccgagaccattactcattacacctagaatggagcaaaatggccttgaccacgacagcagatc Spar.....: tagttatcaa------tagtaaatacaaa-ggcttaataagcgcagaataaatatctaccgagatcattagtcat-atatctaga----------------------------------- Smik.....: cagttatcaa------tagtagatacagg-gtttcaataaacacagcctaaaaatctaccattatcacacgacat-atatataga----------------------------------- Sbay.....: tggtgataaaaaggtacggtaaacacaaccagcttagtaagtaacaggaacgattaacctgcgagcacacacccatttatc--------------------------------------- consensus: ** ** * ** * *** * * *** * * * * ** * * Sbay_spli: DDDDDD 2400~2520: Scer.....: tagcatcgatacgactattaatgacactcaaaagactttcctagaatttagatcgtatacccaattaagtgaaaaactggcatctagttcttcatatacggcactcccctgaacgaagat 2520~2640: Scer.....: ggtcctaaaggggtagcttctgcagtgtcacaaggctccgaatccgtagtctcatggacaactttaacacacgtatattccatcctgggtgcttatggagggcccacgtgcttgtatccg 2640~2658: Scer.....: acagccacgtattttttg { alias......: ['POP8'] chromosome.: 2 description: integral subunit of RNase P and apparent subunit of RNase MRP end........: 186436 exons......: [(1, 47), (123, 477)] gene.......: POP8 introns....: [(48, 122)] length.....: 477 name.......: YBL018C plength....: 159 start......: 185960 tdist......: 185960 type.......: ORF up.........: 0 } Scer: 2 donors and 1 branches Spar: 2 donors and 2 branches Smik: 1 donors and 1 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 424), ('Spar', 424), ('Smik', 424)] ->[('Scer', 626), ('Spar', 626)] ] [ ->[('Scer', 475), ('Spar', 475), ('Smik', 475)] ->[('Spar', 179)] ] 0~120: Scer.....: ---agagattactttacatagagtagataattccatatacttttcataaacaaaaacgagcagatcctttagacagaatatcaagttctttcacaagccaaagaaacttggca-tgatca Spar.....: tagggagattattttacatagactagataatttcacatacttttcgt------aactgggcagattctttagcca-aatattgaacttttttcagaaccaaagaaattagaaa-tcgttt Smik.....: ---agaagtaaccgtacataaaataga-aattgtttacactttttacggataaatgcaaaaagagtatttaatcg-aatatttaactgttttaaatactaaatttactttgcagtaactt consensus: ** * * ****** * **** **** * ****** * *** **** * ***** * * *** * *** * * * * 120~240: Scer.....: gtactggtgcaattcaaataactgcaagtactgaatctc-catcttcaaagcagaaccgtaataatgcgtacaaggaagcgggtgggatatatcatatgttacgggaaagtggttgtttg Spar.....: atgctggcgtaattcaggtagtggcaagtaatcattcttgcactttcaaagttgagccatactaatgcatgcaaagaggctggcagtatacatcatgtgttacggaaaagtgatttttag Smik.....: atgctggtactattcatatagttgcaagtaatggaaatattatattggga-------------aat---tacaaataaatt----gtatttatcatatgatacgggcagactttttttcc consensus: * **** ***** ** ******* * * * ** * *** * *** * * ** ***** ** ***** * ** ** Spar_spli: BBBBBBB 240~360: Scer.....: act--gaagatcatcgagaacgtcataacttcaatacataagtcatcgcgtaattttacaagctttactgttcagcttt-ataggataatcagaataagaaaaggcagataaatagtttg Spar.....: acttgagaaatcacctggagcgttgtaatcttaatacataggtcatcgaatattcttatgaactcaactgcccaacttt-ctagaataatcaaactaaaataaggcaaataaatacttca Smik.....: acgcaggaaaatacccaaagtatcgtaa-tttactacatatgtcatcgcacattactgtaa--tcactttctcagctttaatgaaagaatcaaaacgaaa-atgacacacaaatactt-a consensus: ** * * * * * * *** * * ****** ******* * * * * * * ** **** * * ***** * * * * * ** * ***** ** 360~480: Scer.....: ataaatggccagttgtgATGGGGAAAAAGACTTTTAGAGAATGGCAATATTTCAAGTTATCAATGTATGTATATTTTTGACTTTTTGAGTCTCAACTACCGAAGA-GAAATAAACTACTA Spar.....: ataaatgaccagttgtgatggggaaaaaaactttcagagaatggcagtatttcaagttatcgatgtacgtatatttttggtttttcgaggcccagccacccaaggtaaaataagctacta Smik.....: atgaatgaacagttgtgatggggggaaaaactttcaaagaatggcagtatttcaagttatcaatgtacgtatatttttagcttttcctagccttggcactcaagg-aaaataagctacta consensus: ** **** ************** *** ***** * ********* ************** ***** ********** **** * ** *** ****** ****** Scer_spli: DDDDDD BBBBB Spar_spli: DDDDDD BBBBB Smik_spli: DDDDDD BBBBB known....: >======================================================= 480~600: Scer.....: ACGTACTTTAATATTTATAGTACTTCATTCGATCAAGATGTGGACGATGCACATGCTATTGATCAAATGACATGGAGGCAATGGTTAAATAACGCATTGAAACGTAGTTATGGTATTTTT Spar.....: acttaccttaatatttacagtacttcgttcgatcaagatgtggatgctgctcatgttattgatcagATGACATGGAGGCAATGGTTAAATAACGCATTGAAACGTAGTTATGGTATTTTC Smik.....: acttatgtttatatacatagcacctcgttcgatgaggatatagacaatgtccatgttattgatcagATGACATGGAGGCAATGGTTGAATAACGCATTGAAACGTAGTTATGGTATTTTT consensus: ** ** ** **** * ** ** ** ****** * *** * ** ** **** ********* ******************** ******************************** Scer_spli: BB Spar_spli: BB Smik_spli: BB known....: ==================>= 600~720: Scer.....: GGTGAAGGTGTAGAATATTCATTCCTGCATGTTGACGATAAGCTGGCTTACATCAGAGTAAATCATGCGGATAAAGATACATTTTCTTCGTCCATCAGTACATACATATCTACTGATGAA Spar.....: GGTGAAGGTGTTGAATATTCATTCCTGCATGTTGACGATAAGCTGGCCTACATCAAAGTGAATTATGCGGATAAAGACACATTTTCTTCGTCCATCAGTACATATATATCTACTGATGAA Smik.....: GGTGAAGGCGTTGAATATTCATTTCTCCATGTTGAGGATAAGCTGGCATACATAAGAGTAAACCATGCGGATAAAGATACATTTTCTTCATCGATCAGTACATACATATCTACTGATGAA consensus: ******** ** *********** ** ******** *********** ***** * *** ** ************* *********** ** *********** *************** Scer_spli: DDDDDD Spar_spli: DDDDDD 720~840: Scer.....: CTCGTCGGTTCACCATTAACAGTGTCAATTCTACAAGAATCTTCCAGTTTGAGACTTCTGGAGGTTACTGACGATGACCGCCTATGGCTGAAAAAAGTAATG---GAAGAAGAAGAACAA Spar.....: CTTGTCGGTTCACCCTTAACAGTGACCATTCTACAAGAATCTTCCAATTTGAGACTTTTAGAGGTCACTGACGATGACCGTCTATGGCTGAAGAAAGCAATG---GAAGAAGAGGAACAA Smik.....: CTTGTTGGATCACCTTTAACAGTGACAATTCTACAGGAATGTTCCAGTTTAAAACTTTTGGATATCACTGACCATGACCGTATATGGCTGAAGAGGGCAGTGAGCGAGGAAGAAGAAGAA consensus: ** ** ** ***** ********* * ******** **** ***** *** * **** * ** * ****** ******* ********** * * * ** ** ***** *** ** 840~941: Scer.....: GACTGTAAATGTATATAGaatatcagtttatta-tttaaaaaaacttgggcatagaagaaagtgttttattctcccaaaatatcagctgacgttttcatat Spar.....: GACTGTAAATGTACATAGattattaatttattattttaaaggaaccttggtatagaagaaagtgtattatcttccccaaatgtt-cctaacacccgcatat Smik.....: TACTGTAAATGTACATAAatcattagtttatt--ttaaaaaagaactcgatatagggcaaagaatttc-tcttcaccaaatatctgctactgcctgcatat consensus: ************ *** * ** * ****** ** *** * * * **** **** * * * ** * **** * ** ***** { alias......: ['LSM2', 'SMX5', 'SNP3'] chromosome.: 2 description: snRNA-associated protein of the Sm class end........: 171000 exons......: [(1, 54), (183, 416)] gene.......: LSM2 introns....: [(55, 182)] length.....: 416 name.......: YBL026W plength....: 138 start......: 170585 tdist......: 170585 type.......: ORF up.........: 1 } Scer: 7 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 209), ('Scer', 213)] ->[('Scer', 132)] ->[('Scer', 495)] ->[('Scer', 1244)] ->[('Scer', 1300)] ->[('Scer', 1577)] ] [ ->[('Scer', 1345)] ->[('Scer', 1386)] ] 0~120: Scer.....: ttgattacaaataattagctaagaaattacgtaccttctcattgttctatatatgttttattttctctaaaatgtaccaaatacaataatagtttcaaaggagcagagaaagaaactaag consensus: ************************************************************************************************************************ 120~240: Scer.....: gtgaaggagactgttcgtagaataaatgaatattgattaaaattttctgaaaaaaagagtaatgaagtcgtagtcatcgctaatgtaccgtaagtgagttctgaaaggaggcgggttctt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDDDDDD 240~360: Scer.....: gtttcaacgtagcttgtctagtcctttatggcatcgtgtaaaattggtatatattcagaacacccaggagtgaattgatttgctgctatagggggaaataagatgtaacgatattttttg consensus: ************************************************************************************************************************ 360~480: Scer.....: tactgaatttctttgatgatactgccaggattgagagtttggttgccacatgtacgcttaggacactcatgactatcactcctgtgtatcgcttccatgtcgtatacccactggccgatt consensus: ************************************************************************************************************************ 480~600: Scer.....: ctcaccctctgcattgtatgatattactagtattgcttgtttcaggggcaagaattttcactaatacactaccagtttatgatagcttatctacatccttttactgcaaaattattctgg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 600~720: Scer.....: atttgcaaaattattctggatttgcaaaagttcggcttcactatcaaagcgaaaggtgacctttttatcgtacctttaagaaagataggcataaacaatactgtgtggcaggaaaagatt consensus: ************************************************************************************************************************ 720~840: Scer.....: tgatgaagaccaaaaacagcatcgaagtgctttgctacgatttctttttttactctccggttattttgagctatcttgtcattatatctttaaatttatatatttctttgcccagctttt consensus: ************************************************************************************************************************ 840~960: Scer.....: aagcgttcactggaattgcccatatgttcactaaatataaaactgattattctctcctctatattgtcatctcggcagaaaagctacttttaaataagttttaaacaccagttttctgca consensus: ************************************************************************************************************************ 960~1080: Scer.....: atgataaaaatagctactttggatagaggctgaggcctaactagttggaagaaactacttagggatcctttgtacgggaaacttttttccgctgttgtaattgtatcattgtcgttgttc consensus: ************************************************************************************************************************ 1080~1200: Scer.....: atttttcaaatccaggcaatgaggaagttttgaaccaaaaaaaataaaaccgaaaacagagcaactttaattatagtacggcatataaggaaaacaaatccagaattcaataaaagaata consensus: ************************************************************************************************************************ 1200~1320: Scer.....: caatactttcgaacacatatctcacgctgataacaccctagcaagtATGCTTTTCTTCTCCTTTTTCAAGACTTTAGTTGACCAAGAAGTGGTCGTAGAGGTATGTTCATAATGATTTAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD known....: >=================== 1320~1440: Scer.....: ATCGGAATTCCCTTTGATACAAGAAAACTAACGGGTATCGTACATCAATTTTTGAAAAAAGTCAAGTACTAACGTTTGTTTACCCCTGTTTATTGTGTTTCCACTCAGTTAAAAAACGAC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB BBBBBBB known....: ==========================================================================================================>= 1440~1560: Scer.....: ATTGAAATAAAAGGTACACTACAATCAGTTGACCAATTTTTGAATCTGAAACTAGACAACATATCATGCACAGATGAAAAAAAATATCCACACTTGGGTTCCGTAAGGAATATTTTTATA consensus: ************************************************************************************************************************ 1560~1680: Scer.....: AGAGGTTCAACAGTCAGGTACGTTTACTTGAATAAGAACATGGTAGATACGAATTTGCTACAAGACGCTACCAGAAGGGAGGTAATGACTGAAAGAAAATAAgaattatgcagtctatcc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1680~1800: Scer.....: tcatggcattttttctcattagttttttacacgagtatcattttaggatattgagattatatgtatatgtatatatgtaggccataagatgattcaacggtttgtattaattatccggtt consensus: ************************************************************************************************************************ 1800~1920: Scer.....: ccgagcgttaggagaaataacttggtgtgatatctgtcaagtggtcatccaaaatttttttggccagagcgtaagctacgtagactgatgaggaattctttttttttgccccattttatc consensus: ************************************************************************************************************************ 1920~2040: Scer.....: ccaagaaattcattatgaggttttgttttgttttactaaatgcgcttgatggaaaagcgaatgtcatgaaatgcagatcaacactccaataaaaaagtaaatgtttttaaagaagtatat consensus: ************************************************************************************************************************ 2040~2104: Scer.....: cacgctacaaaaattcataagcactatatttcgaacgttaacctaaatctctcccactaagaaa consensus: **************************************************************** { alias......: ['RPL19B'] chromosome.: 2 description: Ribosomal protein L19B (YL14) (L23B) (rpl5L) end........: 169338 exons......: [(1, 2), (387, 954)] gene.......: RPL19B introns....: [(3, 386)] length.....: 954 name.......: YBL027W plength....: 318 start......: 168385 tdist......: 168385 type.......: ORF up.........: 1 } Scer: 8 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1747), ('Scer', 1751)] ->[('Scer', 13)] ->[('Scer', 337)] ->[('Scer', 586)] ->[('Scer', 810)] ->[('Scer', 1670)] ->[('Scer', 2033)] ] [ ->[('Scer', 81)] ->[('Scer', 499)] ->[('Scer', 923)] ] 0~120: Scer.....: gattcttgttctagtaagttttaacttattttatatgctgaactcttggtttgtcatcagtgtcaatatatcagaatgttttactaatacctagtacgaaaatttttcgtagagcctcat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB 120~240: Scer.....: cgctctgtctctcgctatccaaaaaaaaaaaaaaaagtggaactggatgaatattgcgtataaggacagtgttttaaaacccagacatatttttcaccagtacctcttggaaaacggaaa consensus: ************************************************************************************************************************ 240~360: Scer.....: aagtttttttgcgaatactttcaattcttgagttgtaaggctgcatccctccgtagaacaaaccagagagccgagcttagtaatgagcttacggaatgttcgtcccactgggagggagtg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 360~480: Scer.....: gcaataccgtctaacctctcgcctacgttctcatcgctatgggaattgggcaggcctggtgggactggcccttctttctacacattccacatcggtagcttgttatactcctcgggagat consensus: ************************************************************************************************************************ 480~600: Scer.....: tactgtatctacatcgggatactaatagtacatttatacgctagtgctacttgatagatcttttcaccaaatcgaataaaaagtcaccaataaattagaggaaaATGTATGTTTAACAGT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDDDD known....: >============= 600~720: Scer.....: GATACTAAATTTTGAACCTTTCACAAGATTTATCTTTAAATATGTTATGAATGTCATCCTTTGGAGAGAAATAGATAAGGAAAAAAATTGAGGATACAGCATCCGGTGGTCGCATAGTTG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: GTAGCAACATCCATAGAAGAACCTCAGATAAATTTCAAGCTTGTACGAATTGCCGCGTTTATTACAAACTATAGAATTATCGCAGCAATGGTACGTGTCTGTTCCTGCAAGCGTTAATTC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ======================================================================================================================== 840~960: Scer.....: GATTGATAGATAAAGTAATTCATTAACCTTTGCGAATATGCTCTTTACTGTTAGGTTTCAGGATTTTAAAAATGAAGCAACTTTACTAACATCAATATGCAAATAAATCTGCAAAAACTT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: TTTTTCACAGGGCTAACTTGCGTACTCAAAAGAGACTTGCCGCTTCTGTTGTCGGTGTTGGTAAGAGAAAGGTTTGGTTAGACCCAAACGAAACTTCTGAAATTGCCCAAGCCAACTCTA consensus: ************************************************************************************************************************ known....: ========>= 1080~1200: Scer.....: GAAATGCCATTAGAAAATTGGTCAAGAACGGAACCATCGTCAAGAAGGCCGTTACTGTCCACTCTAAATCTAGAACTAGAGCCCATGCTCAATCCAAGAGAGAAGGTCGTCACAGTGGTT consensus: ************************************************************************************************************************ 1200~1320: Scer.....: ACGGTAAGAGAAAGGGTACTAGAGAAGCTCGTTTACCATCCCAAGTCGTCTGGATCAGAAGATTACGTGTCTTGAGAAGATTATTGGCCAAGTACCGTGACGCTGGTAAGATTGACAAGC consensus: ************************************************************************************************************************ 1320~1440: Scer.....: ATTTGTACCACGTTTTGTACAAGGAATCCAAGGGTAACGCCTTCAAGCACAAGAGAGCTTTGGTTGAACACATTATTCAAGCTAAGGCTGATGCTCAACGTGAAAAGGCTTTGAACGAAG consensus: ************************************************************************************************************************ 1440~1560: Scer.....: AAGCTGAAGCTAGAAGATTGAAGAACAGAGCTGCTCGTGACAGAAGAGCTCAAAGAGTTGCTGAAAAGAGAGACGCTTTGCTAAAGGAAGACGCTTAAttgattacaaataattagctaa consensus: ************************************************************************************************************************ 1560~1680: Scer.....: gaaattacgtaccttctcattgttctatatatgttttattttctctaaaatgtaccaaatacaataatagtttcaaaggagcagagaaagaaactaaggtgaaggagactgttcgtagaa consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1680~1800: Scer.....: taaatgaatattgattaaaattttctgaaaaaaagagtaatgaagtcgtagtcatcgctaatgtaccgtaagtgagttctgaaaggaggcgggttcttgtttcaacgtagcttgtctagt consensus: ************************************************************************************************************************ Scer_spli: DDDDDDDDDD 1800~1920: Scer.....: cctttatggcatcgtgtaaaattggtatatattcagaacacccaggagtgaattgatttgctgctatagggggaaataagatgtaacgatattttttgtactgaatttctttgatgatac consensus: ************************************************************************************************************************ 1920~2040: Scer.....: tgccaggattgagagtttggttgccacatgtacgcttaggacactcatgactatcactcctgtgtatcgcttccatgtcgtatacccactggccgattctcaccctctgcattgtatgat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2040~2160: Scer.....: attactagtattgcttgtttcaggggcaagaattttcactaatacactaccagtttatgatagcttatctacatccttttactgcaaaattattctggatttgcaaaattattctggatt consensus: ************************************************************************************************************************ 2160~2280: Scer.....: tgcaaaagttcggcttcactatcaaagcgaaaggtgacctttttatcgtacctttaagaaagataggcataaacaatactgtgtggcaggaaaagatttgatgaagaccaaaaacagcat consensus: ************************************************************************************************************************ 2280~2400: Scer.....: cgaagtgctttgctacgatttctttttttactctccggttattttgagctatcttgtcattatatctttaaatttatatatttctttgcccagcttttaagcgttcactggaattgccca consensus: ************************************************************************************************************************ 2400~2520: Scer.....: tatgttcactaaatataaaactgattattctctcctctatattgtcatctcggcagaaaagctacttttaaataagttttaaacaccagttttctgcaatgataaaaatagctactttgg consensus: ************************************************************************************************************************ 2520~2640: Scer.....: atagaggctgaggcctaactagttggaagaaactacttagggatcctttgtacgggaaacttttttccgctgttgtaattgtatcattgtcgttgttcatttttcaaatccaggcaatga consensus: ************************************************************************************************************************ 2640~2760: Scer.....: ggaagttttgaaccaaaaaaaataaaaccgaaaacagagcaactttaattatagtacggcatataaggaaaacaaatccagaattcaataaaagaatacaatactttcgaacacatatct consensus: ************************************************************************************************************************ 2760~2784: Scer.....: cacgctgataacaccctagcaagt consensus: ************************ { alias......: ['ERD2'] chromosome.: 2 description: encodes the HDEL receptor required for retention of ER proteins end........: 142830 exons......: [(1, 22), (120, 757)] gene.......: ERD2 introns....: [(23, 119)] length.....: 757 name.......: YBL040C plength....: 252 start......: 142074 tdist......: 142074 type.......: ORF up.........: 0 } Scer: 3 donors and 2 branches Spar: 0 donors and 0 branches Smik: 2 donors and 1 branches Sbay: 3 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1180), ('Smik', 1180), ('Sbay', 1180)] ->[('Sbay', 724)] ->[('Sbay', 1374)] ->[('Scer', 324)] ->[('Scer', 2064)] ->[('Smik', 313)] ] [ ->[('Scer', 1238), ('Smik', 1238), ('Sbay', 1238)] ->[('Sbay', 1106)] ->[('Scer', 1568)] ] 0~120: Scer.....: atcaaaattttagaattaaaagtctactgcattaacaaagataaatttctaatttttttatgtatattata-ttttttggaagagaaaatatttgtagtgcttctctacactgttttttt Smik.....: atcaaaatgtcagaattaaaagtctattgcatgaacaaggataaattttagtttcttttatgtatactata-tttttggaga---aaaatatctacagtgcctttctaca-----ttttt Sbay.....: atc-acataataaaattaaaagtttactgcattaatacagatagatttcaatttattctatgtatattatacttttttggaaagaaaaatatttatagtgccttttt-------tttttc consensus: *** * ** * ********** ** ***** ** * **** **** ** ** ******** **** ***** * * ******* * ***** * * * **** 120~240: Scer.....: tttttcgttcatgttgtctttcctctcctgaatatattt-aatttaataaatctatcttatctga-catatagaagctgtttcgatagagttttcgactggccaacagttgttactgact Smik.....: ttgcccttctaaattgtctttcctcaccaaaatatctttcagtttagtatacgtgccttatttaatcatataggtgtagagtccttatagaatccaattttccaacacctg-tatagact Sbay.....: tacctcttctattatctctttcttt-ccagaatatatcttgatttaataaatctatcttatctaaatatatgggtacttaatccgtttccgaaggagctggttggcattccatggggtta consensus: * * * * * ****** * ** ***** * * **** ** * * ***** * * **** * ** * * ** * * 240~360: Scer.....: ggataaaaatttacgattt-ttcctccaatcttggctttcaaaatgagaaataagagtcttgaaattcaaagaatgt-atctatgtatgaatatagaatatgctcaaa-tatttagtttt Smik.....: aaaaaagaaattattatttattcctcccattttctctttcaaaacaaaaaat---agttgtgtatttcaaagagtatgagctatatatgtatattggataggtttaga-tattcgatttt Sbay.....: acgaagaaagttcatgtttttttaccccgttattactttcgaatgattttctcaggttcttgaaatttaaaatatac-gactataattatatatcagatactttcaaactgcttgatttt consensus: * ** ** *** ** ** * * ***** ** * * ** * ** *** * **** * **** *** * * * * * **** Scer_spli: DDDDDD Smik_spli: DDDDDD 360~480: Scer.....: gtataaggaagttctaaataattttccatggcgtgcttttaccaaagtactgaacagggagattatttatcattttttttcttactcttcgagttgaagtcgattgtaggtgatgacatg Smik.....: tagt------ctttttaagaaggacttccgatgtgaatttataacgacattgaa--gcgctcttatttattgtcttttctcctgctctttgagttaaagtcaattgtgggcgatgacatg Sbay.....: acat------aaccttggggccaactagctgtgtg-atatatcgccagatcgaac-gtatttttacttgtccttatttccgtcaggtttcggatcaaaatcaattgtaggcgatgacaca consensus: * * *** * ** * *** * *** ** * * *** ** * * ** ** ***** ** ******* 480~600: Scer.....: aacattaaataaaatgtacttgaacaaatcagaccagcaaacacccacatcgcaatggtactgggttttctcgttattctgtggaagaattcaattaccggattattgttaaaaaagccc Smik.....: aacattaaatagaatgtacttgagcaaattaaaccagcaaacacccacatcgcaatggtactaggttttcttgttattctatgaaaaaattcgatcaccggattatcgttaaagaatccc Sbay.....: aacattaaataaaaggtactcgaacagatgacactagcaaacacccacattgcgatagtacttggccttctcgttattctgtgaaaaaactcgatcaccggattatcgtagaagaatccc consensus: *********** ** ***** ** ** ** * ** *************** ** ** ***** ** **** ******** ** ** ** ** ** ********** ** ** ** *** 600~720: Scer.....: attagaag-----------tatcctaacgattgattaaagta--aattgttattcacgctactatcgcaatcgtccaactgaaccttattctttattgtatataatctctgccgagaaat Smik.....: attataaa-----------gtcgctagcaactaaactaggaa--ggttgctaattgaactaatattctga-----ctactgaatacaa--ctttataatatagggtgcttaccggctaat Sbay.....: attttatatttgtcgtactgttcctattcaccgacttaaaaagtgactgctatttgtaattttatgttaataa-agaactcgacccta--tttaaatacacacggtgtctttctacgaaa consensus: *** * *** * * * * ** ** * * *** * *** * * ** * * * * * * ** 720~840: Scer.....: tcttatacttatgtatctgggaattcaccaggttagaataccttcccctcctcaatttctaatttt---tttttctacccttatttttctctcttgcttcatcgctctcaaagctaaaag Smik.....: atttattcgtatatatgtgtacattt--tacattacaata--tcctccttctttatttccaa-ctt---tttttctacccttatttttttcactagcttcatcgctctcaaaactgaagg Sbay.....: attcgcatgtaaatatgccaggat---------tagtattctttcttttgcctaagttcacactttttgtttttttacccttatttttctcacttggttcatcgcattttaaaactaaaa consensus: * ** *** ** ** ** * * * * * *** * ** ***** ************* ** ** * ******** * ** ** Sbay_spli: DDDDDD 840~960: Scer.....: ctaatacagcaaacaaaagtgttattaggaattcaattg-agtcgtgaaagaaaaataatattcgtcttacttgaggactcactttggtcaattgagattaaa--------gtgtagtct Smik.....: ctaatacagcaaataaa--cctcattgaatttctaattg-gacaatgtga-caaggcaat-ttctctttacatgaagtatttaactcatttgttgaaccgaga--------atgtaatct Sbay.....: ctaatggagcaaacggt--tctgacaaaaagatcaagtgcgatgacgagacaagatcagtttgcgaatgctcgaactgctgtttttcgccgtttggatcgaggcatatcatatccgacat consensus: ***** ****** * * ** ** * * * * * * * * * * * *** * * * 960~1080: Scer.....: gcaccactgaattcctcg-ttttcctttaaagatccgggatggcttatctgcggtacccggactgaaaacgacgttttagctaaatattgaacacgttaaaaataagttcaaatttcgag Smik.....: agatggtttggctccttg-ttttcctttaaagatccgagatgacttattggtggtacccggactgagaacaacgtcctaattaaatactgaacacgttaaaaacaagttcacagttcgag Sbay.....: gcacgtttgggatcttcatttttcctttgaagatccagaatggcttatgagcactacccggactggcaacgagcatttca------attgaacacgttaaaaacaagtttccatttcgag consensus: * * ** * ********* ******* *** ***** * *********** *** * * * *************** ***** * ****** 1080~1200: Scer.....: gcagatgaatttgctgagggcacttgt-----tcaagagtgagatatacgcgcaagttga-ggcataatcagtaagcaATGAATCCGTTTAGAATCTTAGGTATGTTACTATTTGGAGTT Smik.....: gcagatccattcgctgagattgcttct-----tctagagtaaggcatacacataacttac-gctataatcaattggcaatgaatccgttcagatttttaggtatgttatcataaggagta Sbay.....: gtagatgaatttgctggaagtgcacgtactaatcaagggcaggatatacgcataagtcgaggccgcaatcaatcagcaatgaatccgtttagagtcctaggtatgtgaccacagagagta consensus: * **** *** **** * * ** ** * * **** * ** * * ***** * ************** *** * ********* * * **** Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: BBBBBBB DDDDDD known....: >=================== 1200~1320: Scer.....: TCATGAGGCTTTT-CCCGCCGTAGATCGAACCCAATCTTACTAACAGAGAAAGGG--CTTTTTCCCGACCATCAAGACAGGTGATTTATCACATCTAACCAGTATACTGATCCTGATTCA Smik.....: ttatgaggcttct-tct--cctgaatcaatttcgatcttactaacagagaaaagggcttttttttcgaccattaagacaggtgatttatcacatctaaccagcatattagttctgattcg Sbay.....: ttatgaggtttctaggccttttgtaATGAATTCGATCTTACTAACAGAGAAAAGGGCTTTTTTTCCAACCATTGATACAGGTGATTTATCACATCTAACCAGTATATTGGTCCTGATTCG consensus: * ****** ** * * * * * ****************** ** ***** * ***** * ************************** *** * * ******* Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==============================================================================>= 1320~1440: Scer.....: TAATATCAAGACCACAAGGTACATTGAAGGTATTTCTTTCAAGACCCAAACGTTGTACGCTTTGGTTTTCATAACACGATACTTGGATCTCTTGACTTTTCACTGGGTATCCCTATACAA Smik.....: taatatcaagactactaggtacattgaaggtatatctttcaaaacccaaacgttatatgctttggttttcataacacggtacttggatcttttgacttttcactggatatccttatacaa Sbay.....: CACTATCAAGACCACGAAATACATTGAAGGTATTTCTTTCAAGACCCAAACGTTGTATGCTATGGTTTTCATAACACGGTACTTGGATCTTTTGACGTTCCACTGGGTATCCCTATACAA consensus: * ********* ** * ************** ******** *********** ** *** **************** *********** ***** ** ****** ***** ******* Sbay_spli: DDDDDD 1440~1560: Scer.....: TGCTCTAATGAAAATATTTTTCATTGTATCTACCGCTTACATTGTAGTGCTATTACAAGGGTCTAAAAGAACCAACACCATTGCGTATAATGAAATGCTTATGCATGATACCTTTAAGAT Smik.....: tgctcttATGAAAATATTTTTCATCGTTTCTACTGCTTACATCGTGGTCCTATTACAAGCATCTAAAAGAACCAACACTATCGCATATAATGAAATGCTTATGGGTGATACATTTAAGAT Sbay.....: CGCCTCTATGAAGATATTCTTCATTGTTTCTACCATCTACATCGTAGTTCTACTACAGGGTTCTAAAAGATCTAACACCATCGCATACAACGAGATGCTTATGAGAGATACATTCAAGAT consensus: ** ***** ***** ***** ** ***** ***** ** ** *** **** * ********* * ***** ** ** ** ** ** ********* ***** ** ***** 1560~1680: Scer.....: CCAGCATTTACTAATTGGGAGTGCTCTAATGAGTGTTTTTTTCCATCACAAGTTCACTTTTCTTGAATTAGCATGGAGTTTTTCTGTATGGTTGGAGAGTGTGGCTATTCTACCTCAATT Smik.....: CCAGCATTTGCTTATTTGGAGTGCTCTCATGAGTCTTTTTTTCCATCATAAGTTCTCATTTCTTGAATTAGCATGGAGTTTTTCTGTATGGTTAGAGAGTGTGGCCATCCTGCCTCAGTT Sbay.....: TCAGCATTTGCTTATTGGAAGCGCTGTAATGAGTCTTTTTTTCCCTC-CAAGTTCACATTTCTTGAACTAGCATGGAGCTTTTCCGTGTGGTTGGAGAGTGTGGCCATTCTGCCTCAATT consensus: ******** ** *** * ** *** * ****** ********* ** ****** * ********* ********** ***** ** ***** *********** ** ** ***** ** Scer_spli: BBBBBBB 1680~1800: Scer.....: GTACATGCTATCTAAGGGTGGGAAGACTAGAAGTCTAACTGTTCATTATATTTTTGCCATGGGATTATACAGAGCATTGTATATTCCTAACTGGATTTGGAGGTACAGCACGGAAGATAA Smik.....: ATACATGTTATCTAAGGGTGGAAAGACCAGAAGTCTAACTGTTCATTACATTTTTGCCATGGGATTATACAGAGCATTGTACATTCCTAACTGGATTTGGAGATATCATACCGGAGATAA Sbay.....: GTACCTGTTGTCCAAAGGTGGGAATACCAGAAGTTTGACCATTCATTATATTTTTGCTATGGGGCTATACAGAGCACTGTATATTCCCAACTGGATTTGGAGATACAGTACCGAAG---G consensus: *** ** * ** ** ***** ** ** ****** * ** ******* ******** ***** *********** **** ***** ************** ** ** * ** 1800~1920: Scer.....: AAAATTGGACAAGATTGCCTTCTTCGCGGGACTTTTGCAAACTCTGTTGTACTCTGATTTCTTTTACATTTACTACACTAAAGTCATCAGAGGAAAGGGTTTCAAACTGCCAAAAT--AA Smik.....: AAAACTGGACAAGATTGCTTTTTTCGCAGGATTAATGCAAACTTTATTGTACTCTGATTTCTTTTACATCTATTACACTAAAGTTATTAGAGGAAAAGGCTTCAGACTACCAAAATGAaa Sbay.....: AAAATTGGACAAGATTGCTCTTTCCGCGGGGCTTTTGCAAACTCTGTTGTACTCTGATTTTTTTTACATTTATTACACTAAAGTCATGAAGGGCAAAGGTTTCAAATTGCCAAAATAAta consensus: **** ************* * * *** ** * ******** * ************** ******** ** *********** ** * ** ** ** **** * * ******* * 1920~2040: Scer.....: aaaaa--------aaacctgttttaaatagtgttcgcagcaatatatacaaatttca---atatatcaatgctataccaaaagaaaaaaaaaatacataaaattgatgttgata-ttggt Smik.....: aaaaa--------aaactcatcctgtatggtattggcaccaatatatacgaatttcatttatataacaacgctaaacc-acagaaaaaaaaattacat-aaattgatgttcatatttgat Sbay.....: aaaagacaaccataaactcaccttagatagtttttgtagcaacatatacaatttcta-atatatataattgctccaa--gaagaaaaaaaaaatacat-acattgatgttgata-ttggt consensus: **** **** * ** ** ** * * *** ****** * ** * ***** * *** * *********** ***** * ********* *** *** * 2040~2073: Scer.....: ctatttctttttatactatgatatgtatgca-- Smik.....: ctattt--tattatactatgatatgtgtgca-- Sbay.....: ctattt-tgtttatactacgatatatgtgctca consensus: ****** ******** ***** * *** Scer_spli: DDDDDD { alias......: ['SEC17'] chromosome.: 2 description: peripheral membrane protein required for vesicular transport between ER and Golgi end........: 126081 exons......: [(1, 30), (147, 995)] gene.......: SEC17 introns....: [(31, 146)] length.....: 995 name.......: YBL050W plength....: 331 start......: 125087 tdist......: 125087 type.......: ORF up.........: 1 } Scer: 4 donors and 2 branches Spar: 3 donors and 7 branches Smik: 8 donors and 5 branches Sbay: 3 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 936), ('Scer', 929), ('Spar', 936), ('Smik', 936), ('Smik', 929)] ->[('Scer', 407), ('Spar', 407), ('Smik', 407), ('Sbay', 407)] ->[('Scer', 1580), ('Smik', 1584)] ->[('Sbay', 1657)] ->[('Sbay', 2029)] ->[('Smik', 290)] ->[('Smik', 1447)] ->[('Smik', 1556)] ->[('Smik', 1978)] ->[('Spar', 1010)] ] [ ->[('Scer', 481), ('Spar', 481), ('Smik', 481), ('Sbay', 481)] ->[('Scer', 315), ('Spar', 315)] ->[('Smik', 2014), ('Sbay', 2014)] ->[('Spar', 357), ('Smik', 357)] ->[('Spar', 2025), ('Smik', 2025)] ->[('Sbay', 2072)] ->[('Smik', 774)] ->[('Spar', 76)] ->[('Spar', 223)] ->[('Spar', 816)] ] 0~120: Scer.....: ttcttat-tgttgttgaacacgctttccctagtctgtagcctgcctctatgag-tactatatcacacttcttcttgcgctaatctccaaagacctgctggtaatctcagct--------g Spar.....: ttcttatctgttattaaacacgctttccctagtctgtcacctgcctctatgaaatactatatcacacttctttttatgctaacatccaagaatatgctgctaatctcacct--------g Smik.....: tatttatctgtttt---gcacactgtccctactttatcacctgcctctatgag-taccgtatcacacttcttattatgttgacctctgagagttcgctgctaatctcaact--------a Sbay.....: -tcttgtctgtttgtt-acactctgtcccgaatctatcacgtccgtctatggg-tagcgtatcacactgctttctctgtccacctctcggaattttctgctaatctcagcttcaagctaa consensus: ** * **** *** ** **** * * * * * * * ****** ** ********* *** * * * ** *** ******** ** Spar_spli: BBBBBBB 120~240: Scer.....: aaaggctgcctttaattgttattcttttccaggaaaaaatcgcaaagttgcagcatccgtgtttcgtgaca-tcattgaaggttaccctaatctattacctcggattaacttgaattaat Spar.....: aacg-ctgcctttaattgttattcttttccaggaaaaaatcgcaaaattgcagcatccgtacttcgtgaca-tgtttgtttgttacccttattgaatgcatcagactaacttgaattaat Smik.....: aaaagctctcttcaattgttattattttccaggaaaaaatcgcaaaattgcaacagccgtgaataatgaca-gattcttatgttaccctttgttaatgctcagaataaacttgaaataat Sbay.....: gaaagctgcctttaattgttattattttccagaaaaaaatcgcaaaattgcaacagccgtgtatcgtgacactgcctttccattaccctctgcaatttctcagaattaa-ttgaatcaat consensus: * ** *** ********** ******** ************* ***** ** **** * ***** ******* * * * * ** ***** *** Spar_spli: BBBBBBB 240~360: Scer.....: aaggacacacaggtatagggaaggtaaagttgaagtaatgataagaagtgggcagcaccgaagcagttt-atctgaactaacttctgtacgactcgagaatatagtaagaacaccatcat Spar.....: aaggatatactggtatagggaaggtggaattcaggtagcgataagaagtggtgagcgttgaagcggttttacttgaactaacttctgcacaa--cgagaataca-taagaacgctattac Smik.....: aaggatatattggta---gaaaggtgcaaaaggcttaatgataagaagtggtcagtcttagagccgttatatctgagccaatttctgcacga--ggaggatatagtaagaacaatattac Sbay.....: aaggatgtacaactatacagagggcagaagtgaggcggtaataaggagtggctagcattgaagagattatagccgtgcttattgttgtaaag--tgtgact--agtagcaatagcaatat consensus: ***** * ** * ** * ***** ***** ** ** ** * * * * * ** * * * * * ** ** * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB BBB Smik_spli: DDDDDD BBB 360~480: total....: ====== Scer.....: taacctgaaagttaaaaATGTCAGACCCTGTAGAGTTATTGAAAAGAGTATGTAGTAGGGA-AATATA-TCAAAGGAACAAAATGAAA-GCTATGTGATTCCGTAATTTACGAAGGCAAA Spar.....: taacaaaaaattgaaaaatgtcagaccctgtagagctattaaaaagagtatgtagaaaaaataatataaccgaagggacaaaaagaaa-cctagatcattccagaaattgcagaggcaaa Smik.....: taatcaaaagttgaaaaatgtcagatcctgtggagctattgaaaagagtatgtagcaagag-agtata-tccaagggacaaaatgaaa-cctggttcgctttcagatatcgtgatgaaaa Sbay.....: t----------tcaaaaatgtctgatcctgtggaactattaaaaagagtacgtatcaagaa----gtg-tcgaacggacaaaccgaaaacctgattgggtttaacagtagtagtgatgaa consensus: * * ********* ** ***** ** **** ********* *** * * * ** * ***** **** ** * * * ** Scer_spli: DDDDDD Spar_spli: BBBB DDDDDD Smik_spli: BBBB DDDDDD Sbay_spli: DDDDDD known....: >======================================================================== 480~600: total....: ======= Scer.....: TTACTAACATTGAAATACGGGAATTGATATTTCCCGTTGTGTTAAGGCTGAGAAGAAGGGTGTTCCTTCATCGGGTTTCATGAAATTGTTTAGCGGTTCTGATTCATACAAGTTTGAGGA Spar.....: ttactaacattcgaatacgggaATGGACATTCCCTGTTATGTTAAGGCTGAAAAGAAGGGTGTTCCTTCATCGGGTTTCATGAAACTGTTTAGCGGTTCTGATTCATACAAGTTTGAAGA Smik.....: ttactaacattgaaatgtggaaatgaat-tatcccgtttttt--aggctgagaagaaaggtgttccttcatcaggttttATGAAATTGTTTAGCGGTTCTGATTCTTACAAGTTTGAAGA Sbay.....: ttactaacatggaaatgcgggaatacattttccccactgttttaaggccgaaaagaaaggtgtcgcatcatctggattcATGAAGATTTTTAGCGGTTCGGATTCATACAAGTTTGAAGA consensus: ********** *** ** *** * * ** * * * **** ** ***** ***** * ***** ** ** ***** * *********** ***** *********** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ============================================>= 600~720: Scer.....: GGCTGCTGATCTTTGTGTCCAAGCAGCCACCATTTACCGTCTAAGAAAAGAGTTAAACTTGGCAGGAGACTCGTTTTTGAAAGCTGCTGACTATCAGAAAAAGGCTGGTAATGAAGACGA Spar.....: GGCTGCTGATCTTTGTGTTCAGGCAGCAACCATTTACCGTCTAAGAAAAGAGTTGAACTTGGCAGGAGACTCGTTTTTGAAAGCTGCTGACTATCAGAAAAAAGCTGGTAATGAAGACGA Smik.....: GGCTGCTGATCTTTGTGTCCAGGCAGCTACCATTTACCGTTTGAGAAAAGAATTGAACTTAGCAGGAGACTCTTTTCTAAAAGCCGCTGACTATCAGAAGAAGGCTGGTAACGAAGATGA Sbay.....: GGCAGCTGACCTTTGTGTCCAGGCAGCAACCATTTATCGTCTAAGAAAGGAGTTGAACTTGGCAGGTGACTCATTTTTGAAAGCAGCAGATTATCAGAAACAGGCTGGTAATGAAGATGA consensus: *** ***** ******** ** ***** ******** *** * ***** ** ** ***** ***** ***** *** * ***** ** ** ******** * ******** ***** ** 720~840: Scer.....: AGCAGGAAATACCTACGTAGAGGCTTATAAATGCTTTAAAAGCGGTGGAAACTCTGTGAACGCCGTGGATTCATTAGAAAATGCTATTCAAATTTTTACTCATAGGGGGCAGTTCCGGAG Spar.....: AGCAGGTAATACCTACGTAGAGGCTTATAAATGCTTCAAAAGCGGTGGAAACTCTATCAACGCTGTGGATTCATTGGAAAACGCTATCCAAATTTTTACTAATAGGGGGCAATTCCGGAG Smik.....: AGCAGGAAATACTTACGTAGAAGCTTACAAGTGTTTCAAAAGCGGTGGAAACTCTATTAACGCAGTAGATTCATTGGAGAACGCTATCCAAATTTTTACTCATAGAGGGCAGTTCCGCAG Sbay.....: GGCTGGTAATACCTACGTAGAGGCTTACAAGTGCTTCAAGAGTGGTGGGAACTCTGTTAACGCCGTGAATTCATTAGAGAACGCCATCAAAATCTTTACTCAAAGAGGACAGTTTAGAAG consensus: ** ** ***** ******** ***** ** ** ** ** ** ***** ****** * ***** ** ******* ** ** ** ** **** ****** * ** ** ** ** * ** Spar_spli: BBBBBBB Smik_spli: BBBBBBB 840~960: Scer.....: AGGTGCTAATTTCAAGTTTGAGCTTGGAGAAATTCTAGAAAATGATTTGCATGACTATGCAAAAGCTATAGATTGCTATGAGCTCGCTGGTGAGTGGTATGCCCAAGACCAGTCGGTAGC Spar.....: AGGTGCTAATTTCAAGTTCGAACTAGGAGAAATTTTAGAAAATGATTTGCATGACTATTCGAAAGCTATAGATTGTTATGAGCTTGCCGGCGAGTGGTATGCTCAAGACCAGTCTGTGGC Smik.....: AGGTGCTAATTTCAAGTTTGAACTGGGAGAAATTTTGGAAAATGATTTGCACGACTTTTCAAAGGCCATAGATTGTTACGAGCTTGCTGGTGAGTGGTATGCTCAAGACCAGTCTGTGGC Sbay.....: AGGGGCTAATTTCAAGTTCGAACTGGGAGAAATCCTGGAAAACGACCTCCATGACTATCCAAAGGCTATTGACTGTTATGAGTTGGCTGGTGAATGGTATGGTCAAGATCAATCTGTAGC consensus: *** ************** ** ** ******** * ***** ** * ** **** * * ** ** ** ** ** ** *** * ** ** ** ******* ***** ** ** ** ** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD 960~1080: Scer.....: ATTATCGAATAAGTGTTTTATCAAATGCGCAGATCTAAAGGCTCTTGACGGTCAATATATTGAAGCAAGTGATATATATTCGAAGTTGATCAAGAGCAGCATGGGCAATAGATTGAGCCA Spar.....: ATTATCGAACAAGTGTTTTATCAAATGCGCAGATCTAAAGGCTCTCGATGGTCAGTATATTGAAGCAAGTGATATCTATTCCAAGTTGATTAAGAGCAGCATGGGGAATAGATTGAGTCA Smik.....: ATTGTCTAATAAATGTTTTATCAAATGTGCAGATTTAAAGGCTCTCGATGGTCAATATATCGAAGCAAGTGACATCTATTCCAAGTTGATTAAGAGCAGCATGGGAAATAGGTTGAGTCA Sbay.....: ATTATCGAATAAATGTTTTATCAAGTGTGCAGATTTGAAGGCCCTAGATGGTCAATACATTGAAGCAAGTGACATCTATTCCAAGTTGATCAAGAACAGTGTGGGCAATAGGTTGAGTCA consensus: *** ** ** ** *********** ** ****** * ***** ** ** ***** ** ** *********** ** ***** ******** **** *** **** ***** ***** ** Spar_spli: DDDDDD 1080~1200: Scer.....: ATGGAGTTTGAAGGATTACTTCCTAAAAAAAGGGCTTTGTCAGCTAGCTGCTACTGATGCAGTCGCTGCTGCAAGAACTTTACAAGAGGGTCAAAGTGAAGATCCGAATTTTGCGGATTC Spar.....: ATGGAGTTTGAAGGATTACTTCTTAAAAAGGGGTCTCTGTCAGCTAGCCGCTACTGATGCAGTTGCTGCTGCAAGAACTTTACAAGAGGGGCAAAGTGAAGACCCAAATTTTGTAGATTC Smik.....: ATGGAGTTTGAAGGATTACTTCCTAAAAAAGGGTCTCTGTCAGCTTGCTGCCACTGATGCTGTTGCTGCTGCAAGGACTCTACAAGAGGGTCAAAGTGAAGACCCAAATTTCGCAGATTC Sbay.....: ATGGAGTTTGAAAGAGTACTTCTTGAAAAAGGGGCTTTGCCAGCTGGCTGCTACCGATTCTGTCGCTGCCACAAGGACTTTACAAGAGGGACAAAGTGAAGACCCAAATTTCGCAGATTC consensus: ************ ** ****** * **** ** ** ** ***** ** ** ** *** * ** ***** **** *** ********** *********** ** ***** * ***** 1200~1320: Scer.....: AAGGGAGTCAAATTTCTTGAAAAGTTTAATCGATGCTGTTAATGAAGGTGATAGCGAGCAGCTAAGCGAACACTGTAAGGAGTTTGACAATTTTATGAGACTAGATAAATGGAAAATTAC Spar.....: AAGGGAATCGAACTTTTTGAAAAGTTTAATCGATGCTGTTAATGAAGGTGATAGTGAACAGCTCAGCGAGAATTGTAAGGAATTTGATAATTTCATGAGACTAGATAAATGGAAAATTAC Smik.....: AAGAGAATCGAATTTTTTGAAAAGTCTAATTGACGCCGTTAATGAAGGTGATAGCGAACAGCTCAGTGAGCAATCCAAGGAATTTGATAATTTCATGAGACTTGATAAATGGAAAATCAC Sbay.....: AAGAGAGTCGAACTTCTTGAAAAGCCTGATCGATGCAGTTAATGAGGGTGATAGTGAACAACTAAGTGAGCATTCTAAAGAATTCGATAATTTCATGAGATTAGACAAATGGAAAATCAC consensus: *** ** ** ** ** ******** * ** ** ** ******** ******** ** ** ** ** ** * * ** ** ** ** ***** ****** * ** *********** ** 1320~1440: Scer.....: CATTTTGAATAAAATTAAGGAGTCCATCCAGCAACAAGAAGATGATTTGTTATGAacggcatatacttacgcgcacatacatatatacatatatattataaatgtaacacttgttttacc Spar.....: CATTTTGAATAAAATCAAGGAATCCATCCAGCAACAAGAAGATGATTTGTTATGAtcagcatatacttacgcgcacatacata--------tatattataaatgtaacacttgttttacc Smik.....: AATTTTGAATAAGATTAAGGAGTCCATCCAACAGCAAGAAGATGATCTGTTATGAacggtatataattatacgaacatacatc--------tatattataaatgttatactagttttacc Sbay.....: AGTTCTCAATAAGATCAAGGAGTCCATCCAGCAACAAGAAGACGACCTGTTAT-AAcaacaaatacatacacgcacatacata--------tatactataaatgtaacacttgttttacc consensus: ** * ***** ** ***** ******** ** ******** ** ****** * * * *** ** ** ******** **** ********* * *** ******** 1440~1560: Scer.....: cgaaacggcgaagtaattgtg---tacc-gccgtgcaccttttc-ctcgagataaacatatagcgatgacttagagaacaaagtagtattagtatcatatacttccaacgttaatcaa-- Spar.....: caaaacggccaagtgattgtc---tgccagccgtgcaccttttc-ttcgagataaatatgtagcgatgacttagtggacgaaggagtattggagctatatacttccagcgttgatcaa-- Smik.....: cgaaacggttaagtaattgtt---taccagccgtgcaccctttc-ttcgagataaacgtttagcgatgacttagagaactaagaagtattggtgctatgttctttcaatgtcaatc---- Sbay.....: gaaagcggccaagtaattgtcgtctcccagccgtgcacctcttccttcgagataaacgagtcccaatgactaagagaa-aaggagctagcagcacaacaatctgccaaagtctatcaagc consensus: ** *** **** ***** * ** ********** *** ********** * * ****** ** * * * * ** * * ** ** ** *** Smik_spli: DDDDDD DDDD 1560~1680: Scer.....: ----gcgcaataaac-ctttgttcgtgtgtttcaa-agtt-attgcaaga-gcgaagt---tgaagccatcttttcacgagaagttagctgtggttcgagtctgtcgcacgccgtgtaat Spar.....: ----gcataataaac-ctttgtttatgtgtttcgacagtt-attgcaaga-gcgaagc---taaggccatcatttcacaagaagttggttgcggttcgaatctgtcgtacgctgtgtaat Smik.....: ----gtcagttatat-ctttatctgtatgtttcattggtttactataaaa-gcgaact---caatcagatcttctcacgagaagtttgttgtggctcgaacttgtattacgctgtgtaat Sbay.....: gtctgcgcatcctgtgccttgtgggtgcgcttcaatggcttatcaagaggcgggaaacaaacaaaaccgtcttctcacgagaaatgagctgtagtttgtacgtctcgtacgcggtgtaat consensus: * * ** * * * *** * * * * * *** * ** * **** **** * * ** * * * * * **** ******* Scer_spli: DDDDDD Smik_spli: DDDDDDDDDD DDDDDD Sbay_spli: DDDDDD 1680~1800: Scer.....: gtaaggatcttccctt-agcttttctgatccggagcccttgagggatattacgcatcgcg-tatcttcatacgattactgtac-tttgctgact---tgcattcttgatattgggctata Spar.....: gtaaggatcttccctt-agcttttctgatccggaacccttgagggatattacgcatcgcg-tatcttcatacgatggctgtag-tttgttgact---tgcattcttgatactaagcaata Smik.....: gtaaggatcttccctt-tgcttttctgatccggaacccttgagggatattac-catcgcg-tatcttcatacgattaatatacctttgttgact---tgcattcttgatattgagatata Sbay.....: gtaaggatcttccctttagctttcctgatccgtaacccttgagggaaattgtgcatcgcgatatcttcatacgattacagtacctttgtagaccacctgcattcttgacatcaagctgta consensus: **************** ***** ******** * *********** *** ******* ************** ** **** *** *********** * * ** 1800~1920: Scer.....: gt-tggcacttcgctcgtttcttttctttcgttatataacgtaaccttttttttttta-acttccttatcctgcccct-tatcactctgaacc------ccatagataaacaaagacaga Spar.....: ga-tggcacttttctcgtttcttttccttcgttatataacgtaacctttttttttttttacttccctatcctgcccct-tatcactctaaataagagggccatagataagcaaagtcaga Smik.....: gaatggtgcttt-ctcgtttcttttcctttgttatataacgtaacctttttttttg---atttccttatcctgcccccctatcactttaaacaagggacccaaagataagcaaagataca Sbay.....: ga-tggcccttttctcgtttcttttcccatgctatataacaagtcctctttttttttt-acttctttatcctacccct-tatcactttgaccaagagtttcgtagataagtgaagaaaca consensus: * *** *** ************* * ******** *** ******* * *** ****** **** ******* * * * ****** *** * * 1920~2040: Scer.....: actctgtcctactttatctattactaaactcaacacattacagcccaatattataaatacg-ttcttcttcgttacaagaataggcga-ggttgtacgaactgcaaactagctgcaaatt Spar.....: actctgcctta-tttatctattactaaacacaacacattatagcctaacattacaacaacactttttcttccttacaataataagcgaaggttttacgaactgcaaactaactg------ Smik.....: actctgctttaccttatctactattgaacacaacacattatagcctgatattataacagtacgttttcttccttacgagaataagcga-ggttgtgctaactgcaaattaactgtaaacc Sbay.....: gctctccttcacctcgtctattataaaacaccttaaacaataacctagtatcataagaatataattttttccttaccagtgtaggcaa-gatcgtactaactgcaaacag---------- consensus: **** * * **** ** *** * * * * * ** ** * ** ** *** **** * ** ** * * * * * ********* Spar_spli: BBBBBBB Smik_spli: DDDDDD BBBBBBB BBBBBBB Sbay_spli: BBBBBBB DDDDDDDDDDD 2040~2124: Scer.....: aattgtaa-cacttaagtggagagcagagagtag-cagcactgaaggaaaagggagaagcttatcttactgtagaagaaa---- Spar.....: -----taa-cacctgagtgaagagcagagagtag-tattaataaacgaaaagggagaagcttatcttactgtaggaaaacaaa- Smik.....: aactgcaagcttctgagtaaggagcagagggtag-t--tgatacaaaaaaaagaagaagattgttttactttaaaacaaaag-- Sbay.....: -------------tgagtgctaagcagggagtaactaacaggaaaaaggagtggggaaactactcgtaccgtatagcaaaaaag consensus: * *** ***** * *** * * * *** * * *** ** ** Sbay_spli: DDDDDDDDDDDDDDDDDD BBBBBBB { alias......: [] chromosome.: 2 description: Hypothetical ORF end........: 110500 exons......: [(1, 34), (120, 415)] gene.......: introns....: [(35, 119)] length.....: 415 name.......: YBL059C-A plength....: 138 start......: 110086 tdist......: 110086 type.......: ORF up.........: 0 } Scer: 1 donors and 1 branches Spar: 0 donors and 0 branches Smik: 4 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 212), ('Smik', 212)] ->[('Smik', 547)] ->[('Smik', 648)] ->[('Smik', 721)] ] [ ->[('Scer', 263), ('Smik', 263)] ] 0~120: Smik.....: aggtaaattattggcctattactttcactttctctttctgtgttttcattatgaattataccgcatattaatttgataaagaaggaactactaaaaaccgctgcgcgtccaaccacatcc 120~240: Scer.....: --tcactgatttacaagtgcagttgaacaaaagcaagataag--acaagtactacaacATGCATCCACAGTTAGAAGCTGAACGTTTTCATTGTAAGTATCCAGATTTTACTTCATATAT Smik.....: ttccactggcttacaactgcaa-agggcaacggtaatacaagaaaaaaataccacaacatgcatccccagttagaagcagaacgctttcattgtaagtagcggctttttactt--tctat consensus: ***** ****** **** * *** * ** * *** * ** *** ************* *********** ***** ************** * ******** * *** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >=========================== 240~360: Scer.....: TTGCCTTTTTCTGTGCTCCGACTTACTAACATTGTATT-CTCCCCTTCTT--CATTTTAGCCTGTTTGGACTTCATCAATGCACTCGATAAATGCCATCAAAAGGAATATTACAAGAGAA Smik.....: cggtcttttactgtggttctttctactaacatcgttttcctctccctcttacctttttagcctgtttggacttcattaatgcactcgataaatgccatcagaaagaatattacaagagga consensus: * ***** ***** * * ********* ** ** *** ** **** * ********************** *********************** ** ************** * Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ==========================================================>= 360~480: Scer.....: TATTTGGCCTTTGTAACAACGAAAAGGATGCTTTGAACAAGTGTCTCAAGGAGGCAAGTTTGAATAACAAGAAACGTGCTGTCATTGAAAGTAGAATAAAGAGAGCTGATGTAGAAAAGA Smik.....: tatttgggctttgtaataatgaaaaggatgctttaaacaaatgtctcaaagaggcaagcttgaataacaaaaaacgtgctgttATGGAAAGTAGAGTGAAAAGGGCTGATGTGGAGAAAA consensus: ******* ******** ** ************** ***** ******** ******** *********** *********** ** ********* * ** ** ******** ** ** * 480~600: Scer.....: GATGGAAGAAAATTGAGGAAGAAGAATATGGCGAGGACGCTATATTAAAGACTATCTTAGATAGACAGTACGCCAAGAAAAAGCAGGAAAGTGACAATGATGCGAACTCGAAATAAaagc Smik.....: GGTGGAAGAAAATTGAAGAAGAGGAATATGGTGAGGACGCTATACTTAAGACTATTCTAGATAGACAGTATGCCAAGAAGAAGCAAGCAGCTGACAACGATGCGCATTCGAAATAGacgc consensus: * ************** ***** ******** ************ * ******** ************* ******** ***** * * ****** ****** * ******** * ** Smik_spli: DDDDDD 600~720: Scer.....: tttttttctgtcgctacttcattcacacaaatcatctcaatatcccttgtaaataaa-aggca-gagtacagttttcaagtttatatttcttcagcgcagtctttatatttatatcttta Smik.....: ttggttttcttcgctcatttctttatataaataatcctagtttttcctgtaagtagacaaatataagaactatgttagagtttatgattcctaatctctctatttatatttatatcttaa consensus: ** *** ***** ** ** * * **** *** * * * * ***** ** * * * ** ** * ** ******* *** * * * * * **************** * Smik_spli: DDDDDD 720~729: Scer.....: aatatac-- Smik.....: agtacgtat consensus: * ** Smik_spli: DDDDDD { alias......: [] chromosome.: 2 description: Hypothetical ORF end........: 111205 exons......: [(1, 286), (356, 651)] gene.......: introns....: [(287, 355)] length.....: 651 name.......: YBL059W plength....: 217 start......: 110555 tdist......: 110555 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 3 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 611), ('Smik', 611)] ->[('Scer', 1110)] ->[('Smik', 259)] ->[('Smik', 1144)] ] [ ->[('Scer', 657), ('Smik', 657)] ->[('Scer', 1162)] ] 0~120: Smik.....: aacagcacgttttttgttattcaagcttgcctctttgagacatttgtttaaagcatccttttcattattacaaagcccaaatatcctcttgtaatattctttctgatggcatttatcgag 120~240: Smik.....: tgcattaatgaagtccaaacaggctaaaaaggtaagagggagaggaaaacgatgttagtagaaagaaccacagtaaaagaccgatagaaagtaaaaagccgctacttacaatgaaagcgt 240~360: Scer.....: -----------------------gttgtagtacttgt--cttatcttgcttttgttcaactgcacttgtaaatcagtgaA----TGTTATTGGACGCGCAGCGATTTTTTAATAGGTCTT Smik.....: tctgcttctaactggggatgcatgttgtggtatttttttcttgtattaccgttgccct-ttgcagttgtaagccagtggaaggatgtggttggacgcgcagcggttttt-agtagttcct consensus: ***** *** ** * *** * ** * *** * **** ****** ***** * *** ************** ***** * *** ** * Smik_spli: DDDDDD 360~480: Scer.....: TCTCTATTAATGTAATATGCGAATTGAAACATAATGTAAACACAAGAAGAAAATTCGAAA-TAAAGGACTGGCCAACAATA-ATGTTAGTGAGCAGAAACGACAAGCCCAAAATCAGTAG Smik.....: tctttatcaaattaatatgcggtataattcataatgaaaacacagaaagagaaagtgaaagtaataggccaataatttacctATGTTACTGGATAAGAATGACAGGGCTACTGTCAGCAG consensus: *** *** ** ********* * * ******* ******* **** ** **** *** * * * * ****** ** * ** **** * * * **** ** 480~600: Scer.....: TGAGGAAGTCACACATTTTATAGACGACTATAAAAAGAGGAGGAAAACTCAGATGACACGATTCTTCGGAATCACTATTTTTACACTTATAACATGTAGAATTGCCATGAAGAAAATGAT Smik.....: TGAGGATGTCACACATTTCAAAGACAGCTACAAGAAGAGAAGAAAGATTCAAATGGCACGGTTCTTTGGAATCACCATTTTTACACTTATAACATGCAGAATGGCCATGAAAAAAATGAT consensus: ****** *********** * **** *** ** ***** ** ** * *** *** **** ***** ******** ******************** ***** ******** ******** 600~720: Scer.....: AACTGCAAAAGGTATGCATAGGCAATAACTTC-GGCCTCATACTCAAAGAACACGTTTACTAACATAACTTAT----TTACATAGTGCCATTGAACACTTTTCAAGCAAACTACGCCAGC Smik.....: AATAACGAAAGGTATGTATAAGCAACTACTTCCGATTTTTTGCCCAACCATCACATTCACTAACCCAACTCAACTTATTACACAGCACCCTTGAATACATTTCAACAGAACTACGCTATC consensus: ** * ********* *** **** ***** * * * * *** * *** ** ****** **** * ***** ** ** ***** ** ****** ******** * * Scer_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB known....: >=======================================================================>= 720~840: Scer.....: C---------GGACGCAGACAATAACACACACACAAAAGAGTCTTGCAGGTTCTCTTTTAGCGGCAACGGGCATGACACTAGGTATATTTGGTATGGGCATCACAGGGACATGTTGGAGC Smik.....: CCACGCATCAAGGTTCAGACTGCAACGGGCACGCAAAAGAACCTTGCAAGCTCTCTATTAGTGACCACAGGCATGACATTGGGTATATTTGGTATGGGTATTACAGGAACATGTTGGAGC consensus: * * ***** *** *** ******* ****** * ***** **** * * ** ********* * ***************** ** ***** ************ 840~960: Scer.....: TGGGATGTTTCATCATTTCAGGAACTAAAGCAACGTCTGGAAAGGCGTGCCAACAACGAATTTGTAGTGACAAACATGCCTCTGGATAAAAGAAGCCAGCAAGTAGTGGACAGCTTAGTT Smik.....: TGGGACGTTTCATCCTTTCAGGAGCTGAAACAGCGATTGGAAAGACGTGCAAAGAACGAATATGTGGTGACAAACATGCCTCTTGATAAAAGGAACCGGCAAGTAGTGGATGCCTTAGTC consensus: ***** ******** ******** ** ** ** ** ******* ***** ** ******* *** ***************** ******** * ** ************ ****** 960~1080: Scer.....: AAGACACACAATTCATCTCTTTGTAAATAGtgttataccatagtagtagtttcaataatatattccactacttatatgtgttacccgcattagaactcttattggtggcgaaaatcgatg Smik.....: GAGACACAGAA---ATATCTATGTAAATAGtgttataccgcagtattagcttcaacagtgtatttagtgacaggtgcctcttacccgcttttgatttcttattggtggcaaaaagtggta consensus: ******* ** ** *** ****************** **** *** ***** * * **** ** * * ******** ** ** ************* **** * * 1080~1182: Scer.....: gcaataaagaacggaaggggtttaatagttgtatgcttaacatatttcgatttaaatatataagaaacgtcggtagcacaacaattaactcattatttaggt Smik.....: gtaataaagaactgaaggggtccaatggttacatgctaccattaatcaggcataagtttaaaaagtacgttagtagtacagcaattgatatcaaaattaggt consensus: * ********** ******** *** *** ***** ** * * *** * ** ** **** **** *** ***** * * ****** Scer_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD { alias......: ['RPL23A'] chromosome.: 2 description: Ribosomal protein L23A (L17aA) (YL32) end........: 60732 exons......: [(1, 42), (547, 918)] gene.......: RPL23A introns....: [(43, 546)] length.....: 918 name.......: YBL087C plength....: 306 start......: 59815 tdist......: 59815 type.......: ORF up.........: 0 } Scer: 2 donors and 3 branches Spar: 3 donors and 1 branches Smik: 6 donors and 1 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 550), ('Spar', 550), ('Smik', 550), ('Sbay', 550)] ->[('Smik', 822), ('Smik', 826), ('Smik', 830)] ->[('Spar', 1283), ('Smik', 1283)] ->[('Sbay', 11)] ->[('Sbay', 102)] ->[('Sbay', 716)] ->[('Sbay', 1150)] ->[('Scer', 1665)] ->[('Smik', 1770)] ->[('Spar', 773)] ] [ ->[('Scer', 1040), ('Spar', 1040), ('Smik', 1040), ('Sbay', 1040)] ->[('Sbay', 1748)] ->[('Scer', 933)] ->[('Scer', 1014)] ] 0~120: Scer.....: --------aatatttgta-ttgttttatgtaattata-atcttaagcttgcaataccaatcactattaccatgtta-atgatcccccagataaaaa--gacaagacagagcatatatcag Spar.....: acgggctaaatatttgta-ttgttttatataaatgta-atcctaagcttgcaatcgcaattactattaccatatcatgatatacctcagataaaaaataagataatagagcatagaacag Smik.....: ...........acttttatattttttattagatggta-atc-aaaacttgcagtattgaatt---taattatttcaatagtatctccaaataaaa---ggtagaatataac-------tg Sbay.....: ---------gtgtatgtactcaataaatatattcataggtctcaaacttgcaaaacaaaaaa-----actatgtcagcattaaccccagcttaaatg-gagagtatgtgacg-actttac consensus: * * ** * ** ** ** ** ****** * * ** * * * ** * *** * * * Sbay_spli: DDDDDD DDDDDD 120~240: Scer.....: actacattaacatctgtacacccc---------caactgctttgaaaaaacccatgcagttattattttca-acagaccaagtttttttatcgcttatccggc--tcacagaacgagccg Spar.....: acgactttaacaccggtacaccat-----atgaaaaatgccct-taaaaacccatgcagtt--tattttaataaagaccaaa-tttgtggtggcttatcccgcttttatagaaattgccg Smik.....: acgactttaacaccagtacatcatgtattgtgagaattttcttaaaaacacccatgcagtt-tcattttagtaaaaacaaaattccttgctca-tcatttctctttgacagaaaccgccg Sbay.....: gccggtacaccatatttgcccttc-----at-aataatattttgttaaaacccatgcaattccca-ctagattaaaaccaagtgttttggttgcccgcctggctgtaacagaaaccgtcg consensus: * * ** * * * * * ** ********* ** * * * ** ** * * * * * **** * ** 240~360: Scer.....: tacaaccgtcatcagacttgcatggaaatgttgaaaaagaggt-aaaaaagaaaatatcaaacccaaacacgctcgggctgaaaaa-ttaatatg-gcaggaaacgaactgtagccataa Spar.....: tacaaccattagcagtcttgcatagaaatgttgaaaaagagataaaaaaagaaaatatcaaacccaaacacgctcgggctgaaaaa-ttaatttg-gccggatacgaactgtagccataa Smik.....: tacaacaggaatgaggcttgcatagggatgttgaaaagacaaa-aagaaagaaagcatc-aacccaaacacgctcgggttgaaaaatttaatatgagcctaatacgtgctgtagccatta Sbay.....: tacaacaacttcgaaaaatccagaaaaaatgtgaaaaaagag--aaaaaaggaagtttcaaacccaaacacgcccaggctgaaaaatttattatg-gcctaatacgaaccgtagccatta consensus: ****** * * ** * ****** ** **** ** ** ************* * ** ******* *** * ** ** * *** * ******** * 360~480: Scer.....: tgtacctg-ttcccgctaatagtaataccatcgtattgctaagg-----------ttagtagctaaaaatctcttacttt-----ctttattttgactcttaggtcttacaagcaataca Spar.....: tgtacctgtttcccgctaatagca--actatcatattgctaaggttgtaattgatttagtagctggaaatctcttacttt-----cgttgttttcattcttggggcttacaagtaataca Smik.....: tgtaccag-ctcccgctcacaacaatattgtcataatgctatggtcatatttgatatagtagcttaaag-ctcttgttat-----cgttgttttcaatcttggg-ttcacaaaagatata Sbay.....: tgtgccag--ttccgttaatagcaatattactatagtgcttaag-----------ctataagctaaaaacctcttgcttttaaagtatagttcttattattaggttcctcaagtaacaca consensus: *** ** * * *** * * * * * ** **** * ** **** ** ***** * * * ** * * * ** ** *** * * * 480~600: total....: ====== Scer.....: aaaccaacacacctatatataactaataATGTCCGGTAACGGTGCTCAAGGTACTAAGTTTAGAATCTCAGTATGTT--AAAATTTTTATTTTCCACAATGCAATTTGGTTAAATTGATC Spar.....: aatccaacacacccatatataactaataatgtccggtaacggtgctcaaggtactaagtttagaatctcagtatgtt--aaaattttcattttccacaatgcaatttggttaaattgatt Smik.....: aagtcaacttacccatatataactaaaaatgtccggtaacggtgctcaaggtactaagtttagaatctcagtatgtt---aaatttttattttccacaatgtagtttggttaaattgatt Sbay.....: aactccacttacccatatacaactaa-aatgtccggtaacggtgctcaaggtactaagtttagaatttctgtatgtttaaaaaatttgttttgccatagtgcaatttggttagtttgaat consensus: ** * ** *** ***** ****** *************************************** ** ******* *** *** *** *** * ** * ******** **** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >================================================= 600~720: Scer.....: ATAAAGTAAAGTTCCAAGATTTCATTTTGCTGGGTACAACAG--AATTAAACAGAGGTTTAAAAGACGCTAAACACTAAGTGTGAAGCCTGATCATATACCTATCGGTGTTATTTTCCAT Spar.....: atgaagcgaagtttcaagattttattttactgggtccaacaa--gataaaaca-agcttttaatgaccttaaaagctaagtgcagagtcaggtcatattccttttgag---attctccat Smik.....: ataaagtaaggtttttgagattta--ctgtagcagacaacaa------aaataaaggtc--aacgaaattgaacgctaagtgtgtagcctggttatacttttactgaagaaatttttcat Sbay.....: atgaagttaaataccaagacttga-acgacagggcgaaataatcaatgatttaatgatagaaatgacgttttgaaccatattccaa-tcaaaagatcttccttagggagagatt-agtat consensus: ** *** * * ** * * ** * * * * * ** ** * * * * * * ** * * *** ** Sbay_spli: DDDD known....: ======================================================================================================================== 720~840: Scer.....: AA-GAATGGTAGATGTG--CCATCACTGGTACCGCCCCGCCAAAGATGCAATTACACACATAAAT-TCAGTTTTTAAATGGTTAAGCGGGCTGTATTTGCAGATGAAGTGATACCTGTCA Spar.....: aa-caat----gatgcg--tcatcgctaattatgccccgccgaatatgcaactgtatgcctaaatggcagtatttgaatgactaagtgggctatatttgaaaatgaggtgatccgtgtca Smik.....: aatgaatggtctatatgccccatcgctatttacaccctgccaaaagtacaacagtgtacctaactgataatattcaaatgattcaacggcctgccttcataggtatgtacgtacgtggaa Sbay.....: gc-gatgaaatttttta--acccttccaagaatgcaactgtgaa-atcgaatgagttatgtactt-ccagcgtctaaacgaattcgcagactgtctttgtgaaacaagcgaagcattaca consensus: * * * * * ** * ** ** * * * ** * * * ** ** * * * Spar_spli: DDDDDD Smik_spli: DDDDDDDDDDDDDD Sbay_spli: DD known....: ======================================================================================================================== 840~960: Scer.....: ATATTCATGG-ACTC-----------AAAAATTTCTGGTTTCAAAATCATACACGGCAAGCATATCCTAACTCCCTCT-T------TTGCCCATACTAATGGATAACCATCGAAA----T Spar.....: aaatttatgg-actc-----------aaacctttcaggttt-aggattatatacggcaagcgtattctgcttccctctgt------tcgcctacactaatgagtaaccgttgaaacaggt Smik.....: aacttacaaatggta---------tcagaatatttcaaatcaaaagttatataccgtaaccatgtttttttttcctatgc------ttgtcaacattattggataaccgtcaaaatcaac Sbay.....: agtatagtgatactcgaagcaatggaaaaacctccaaaaaaaaaggttttatgcgacaaacctggtctatctctctttctaccgtagtggcgtaacaagaaaacaactatcaccatcttt consensus: * * * * * * * * ** * ** * * * * ** * * * * * *** * * Scer_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: total....: ======= Scer.....: GTTATTTCTACAAAAATCACGCTTAAC-TCTATTTTTCAAGATTAACCACAT-CTGCTAACTTTC---TCCCTATGCTTTTACTAACAAAATTATTCTCACTCCCCGATATTGAGATCT- Spar.....: ctaaattctgcaaacgtctcgtttaac-tctatatttcaggattaatcacataacgccaac-ttc---tcccgactcttttactaaca--actattctcattccctaatgttgagaactc Smik.....: caagatttcacaaatgtctcgcttaacttctatatttacagatcaatcactcaattccaaaactt---cccgactttttttactaaca--attgtgctcattctttaattatgaggtat- Sbay.....: ttagaattgatggatgcctcgttcact-ttcattcttcaaaattaatcacaa-aaaccaatttccaagtgactttttttttactaacaacactattctcattccttcat-ttgagaaacg consensus: * * * ** * * * ** ** ** ** *** * ** *********** * * * **** ** ** **** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 1080~1200: Scer.....: TTTTTAACTAGTTAGGTCTACCAGTCGGTGCCATCATGAACTGTGCTGACAACAGTGGTGCCAGAAACTTGTACATTATCGCCGTCAAAGGCTCTGGTTCCAGATTGAACAGATTGCCAG Spar.....: tttctaactagttaggtctaccagtcggtgccatcATGAACTGTGCTGACAACAGTGGTGCTAGAAACTTGTACATTATTGCCGTCAAAGGTTCTGGTTCCAGATTGAACAGATTGCCAG Smik.....: attttaactagttaggtctaccagtcggtgccatcATGAACTGCGCTGACAACAGTGGTGCCAGAAACTTGTACATTATTGCCGTCAAGGGTTCTGGTTCCAGATTGAACAGATTGCCTG Sbay.....: tttttaactagttaggtctaccagtcggtgccatcATGAACTGTGCTGACAACAGTGGTGCCAGAAACTTGTACGTCATCGCCGTCAAAGGTTCTGGTTCCAGATTGAACAGATTGCCAG consensus: ** *************************************** ***************** ************ * ** ******** ** ************************** * Sbay_spli: DDDDDD known....: =========>= 1200~1320: Scer.....: CCGCCTCTCTAGGTGATATGGTTATGGCCACCGTTAAGAAGGGTAAGCCAGAATTGAGAAAGAAGGTTATGCCAGCTATTGTTGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTG Spar.....: CCGCCTCCCTAGGTGATATGGTTATGGCTACTGTTAAGAAGGGTAAGCCAGAATTAAGAAAGAAGGTTATGCCAGCAATCGTTGTTCGTCAAGCCAAGTCTTGGAGAAGAAGAGACGGTG Smik.....: CCGCCTCCCTAGGTGATATGGTTATGGCCACTGTTAAGAAAGGTAAGCCAGAATTAAGAAAGAAGGTTATGCCAGCTATTGTTGTTCGTCAAGCCAAGTCCTGGAGAAGAAGGGATGGTG Sbay.....: CCGCCTCTTTAGGTGATATGGTTATGGCCACTGTTAAGAAAGGTAAGCCAGAATTGAGAAAGAAGGTTATGCCAGCTATTGTTGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTG consensus: ******* ******************* ** ******** ************** ******************** ** ***** ******** ***** *********** ** **** Spar_spli: DDDDDD Smik_spli: DDDDDD 1320~1440: Scer.....: TCTTTTTGTACTTCGAAGACAATGCTGGTGTCATCGCTAATCCTAAGGGTGAAATGAAGGGTTCCGCCATCACTGGTCCAGTCGGTAAGGAATGTGCCGATTTATGGCCAAGAGTTGCAT Spar.....: TCTTCTTGTATTTCGAAGACAATGCTGGTGTCATCGCCAATCCAAAGGGTGAAATGAAGGGTTCAGCTATCACTGGTCCAGTCGGTAAAGAATGTGCCGATTTATGGCCAAGAGTTGCAT Smik.....: TCTTCTTGTATTTTGAAGACAATGCTGGTGTCATCGCCAATCCAAAGGGTGAAATGAAGGGTTCTGCTATTACCGGCCCAGTCGGTAAGGAATGTGCCGATTTGTGGCCAAGAGTTGCAT Sbay.....: TCTTTTTGTACTTTGAAGACAATGCCGGTGTCATCGCCAACCCAAAGGGTGAAATGAAGGGTTCTGCCATCACTGGTCCAGTCGGTAAAGAATGTGCCGATTTGTGGCCAAGAGTTGCAT consensus: **** ***** ** *********** *********** ** ** ******************** ** ** ** ** *********** ************** **************** 1440~1560: Scer.....: CTAACTCCGGTGTTGTTGTGTAAaaaggaaattattttgactcatactcttagattcttcaattatatata-ttttctttataaataacaatctcttaaacagattaaagaaactcaata Spar.....: CTAACTCCGGTGTTGTTGTGTAAaaaggaaattattttgactcatactcttagatttcacaaatatacata-ttttctttataaat-acaatctcttgaacagattaaagaaactcaatt Smik.....: CTAACTCCGGTGTCGTTGTGTAAagagaatattg-tttgactcttacttttagactttacaaatatgtatacttttctttataaat-acaatctc--gaacagattgaag.......... Sbay.....: CCAACTCCGGTGTTGTCGTGTAAaaaggaaattgttttgactcttacttttagattttacaaatatatata-ttttctatataac--atgatcttttaaacagattaagaaaactcaatt consensus: * *********** ** ******* ** * *** ******** **** ***** * *** *** *** ****** ***** * **** ******** * ********* 1560~1680: Scer.....: -attcattgcatttttagatgaaaatattactattatcgttcatcgagagaatcacatg---atattatgagcgtgataggagggtctatatatttt---ttggggtacgtcaaaaaagc Spar.....: -attcattgcatttttagaggaaagtattaatattatcgctcattcagagaatcatctggaaaaattacgagcatggtgggatactctacattttttttcttggggtacgcc-aaaaagc Sbay.....: gattcattgcatttttagaggaaatcattaacattgtttactctttttgaaagtagatg---aagtcatcgacttga--------tctacacatttt---ttttggtacgcaaacatgac consensus: ****************** **** **** *** * * ** * ** * * * * ** **** * **** ** ****** * * * Scer_spli: DDDDDD 1680~1800: Scer.....: aaacagacacgttaagaaggtaagaat---aacagatg----atagaatgttttgctagtgagaa-acaagt-atggcaccagccgtacaatatgcatattttgacatttt-tcaaggta Spar.....: acttacacacgtcaataagataagaat----tcatatg----atagagtgatttgcaagccagaa-acaaataacgacaccagccgtacaatatgcgtattttgacatttt-tcaagata Smik.....: ...............................................acaatttgcaagcgagaa-acaagtaacggttttagccgtgaagtatgcgt--tttgatattt--tcaagatt Sbay.....: caacatacacgccagtaagattagaatgtatatgaatgctaaaaagagcgttccgcaagcaagaacgcaactaacagctccagccgtacaatatgcgtactaagtcattttgttaagatc consensus: * ***** * *** * ***** *** * *** * ** ** **** *** * * ****** * ***** * * * **** * *** * Smik_spli: DDDDDD Sbay_spli: BBBBBBB 1800~1920: Scer.....: aattagttccaagttaatagaataatcaagactaattgacttctcaaagcctcgcaaa-aaaagcaggaaattcgaaaaaaaagccttcaaagaaaaggg------aaatcagt--gtaa Spar.....: aactagatccaagttaatagaattattaaagctaattgacatctcacacacacgaaaagaaaagcaaacaattcg-agaaaactccgccaaagaaaagggtaagctaagctagtaggtag Smik.....: aactaga-ctaagttgataaagtaagataagccaa-tagctcttccagtactcgtaaa-gaaggcaaacaattcgaaaggaaatctacgaaagaagaagg----gcaagctagtaggtat Sbay.....: aactgaaatcaagacaatcgaataacgaaaactagttaaacatccccactcctcacaatacaagcaaattttttaaaaaaggttaccagaaaaaaaaaaaaaaggcaaagcaattggaat consensus: ** * *** ** * * * * * * * * * ** * *** ** * *** ** * ** * * * * 1920~1928: Scer.....: catagacg Spar.....: cgtaaaca Smik.....: cataagca Sbay.....: cacaaaca consensus: * * * { alias......: [] chromosome.: 2 description: Hypothetical ORF end........: 5009 exons......: [(1, 794), (894, 2103)] gene.......: introns....: [(795, 893)] length.....: 2103 name.......: YBL111C plength....: 701 start......: 2907 tdist......: 2907 type.......: ORF up.........: 0 } Scer: 18 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1407), ('Scer', 1398)] ->[('Scer', 145)] ->[('Scer', 236)] ->[('Scer', 269)] ->[('Scer', 357)] ->[('Scer', 702)] ->[('Scer', 1131)] ->[('Scer', 1332)] ->[('Scer', 1439)] ->[('Scer', 1507)] ->[('Scer', 1544)] ->[('Scer', 1614)] ->[('Scer', 1697)] ->[('Scer', 2269)] ->[('Scer', 2614)] ->[('Scer', 3389)] ->[('Scer', 4466)] ] [ ->[('Scer', 2387)] ->[('Scer', 3418)] ->[('Scer', 4241)] ] 0~120: Scer.....: ggagtgatgcctttacgaatgaaaatccatagacagtgaaaagtaatgaaaaaataaaataaaaaactactttttttgatgatataaataccgccgattatataaatgtatattaatatt consensus: ************************************************************************************************************************ 120~240: Scer.....: ataaacctatttgatcaatgacggtgttcgtgaagcattttatgaatacgatgaacataagaaagaaacttttacactattgtagaaaaagcgtggacggtaataaagctaacagagtat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDD 240~360: Scer.....: gtccaataaacaataatgaaattggaagcgtatgacttcgcagcactttgtccttccataaaaatgagtcgctgcttcttttttcattttttggcgcgtcgcgtcgggccatatagagta consensus: ************************************************************************************************************************ Scer_spli: DD DDDDDD DDD 360~480: Scer.....: tgcgtcacttctaagaacaagattgcagatcagggtagtggagttacaagtcatggtaccaaactctcatttggagatcctcattttttgacacctaaaatattaagatttatggtttgg consensus: ************************************************************************************************************************ Scer_spli: DDD 480~600: Scer.....: gatagtttgttgtaactgtaactagaaataaagctgaggggttagtgttttatcaacaataagatagagggtggtaagatgaagtgagacaatatcgtaacgtccgttttagtatacggc consensus: ************************************************************************************************************************ 600~720: Scer.....: gctgataagttataatatagtagggttatttgacgtttcattataattctacaaaaacaacgtacatatcactgtatcgtcttctttagatatagtctcttcgtatgagtagtgtcacat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: acaagattaaagatgcatcagttatgcttttaggatattgcggatagcatatgagaatggaaataggatacaattgtatcatagcaccggcatgagtttgagccactaccgtattgtttc consensus: ************************************************************************************************************************ 840~960: Scer.....: tcggtgaatatagagtgttacgacagtgaggtggcatattattctaatgtatggtctgtgaaagttagaaatattctgaaatggtatccgttcaagcaaatggtaatattaaggaacttt consensus: ************************************************************************************************************************ 960~1080: Scer.....: tacgttaatgacgtcatggtggtatagatacgcaattgagtgtgtttatttcgtaaagttgaaagataaataatttttatgtttaggtgattttagtggtaattttttggttatattggc consensus: ************************************************************************************************************************ 1080~1200: Scer.....: ataagtgtatataatttgagtggttagtatatggtgcaaaagtggtataacgtatgtattaagagcagttatacaatatttgggcccgccgaatgagatatagatattaaaatgtggata consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1200~1320: Scer.....: atcgtgggagttatgggtaaatggctcagggtatagaccgctgaggcaagtgccgtgcataatgatgtgggtgcatttagtactgatttagtgagagatgggtcatggagtggagtagaa consensus: ************************************************************************************************************************ 1320~1440: Scer.....: tgtgagagtagggtaagtttgagagtggtatatactgtagcatccgtgtgcgtatggcatatcagtatacaagtgaaggtgagtatggcatgtgatgtgtggtggtataaagtggtaggg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD DDDDDD D 1440~1560: Scer.....: taagtatatgtgtattatttacgatcatttgttaacgtttcaatatggagggtagaacaacagtatggtgagtagcagatggtggatggtagagtaatggcagggtaagtggtagtgaag consensus: ************************************************************************************************************************ Scer_spli: DDDDD DDDDDD DDDDDD 1560~1680: Scer.....: ttgaatatggctaattggagggtaacggttatggtggacggttgattggtggtagtaagtagagggatggatggtggttgggagtggtatggttgaatgggacagggtaacaagtggaga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1680~1800: Scer.....: ggtagggtaatgtgagggtaagttgagagacaggttggaagggttgaaatagggtagggttagggtagtgttagggtatatatatatgtcactgtattgcatgctggatggtgttagaca consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1800~1920: Scer.....: aggccgtagggacatatagcatctaggaagtaaccttgtacgaaaataggcaatatttcctgtttaggcgattgtgacgcagattttagtccaacgatctagcgtcaaggaattttttta consensus: ************************************************************************************************************************ 1920~2040: Scer.....: tagtgggacattgcaccaaggaagtaacttgatacgtcgtgggtgaatgggtctgttttcttattcggcggggtaatacatttttgggggaagtttgtctgtctgacgcgccatatgtag consensus: ************************************************************************************************************************ 2040~2160: Scer.....: gtacgccaaaaagggctcctctacttcgaagcgcgaggtcgtatacctaataaggaaatgtaatttataactttttattatattggtcttttcgagagcggaacgtaggtccatgtttaa consensus: ************************************************************************************************************************ 2160~2280: Scer.....: agtatccaagagaatatccacgaagcggctgagcaacgaacagaatcctggttctcctcgactaagcagatagttaagatactgtgcaccatggaaattgaaaacgaaagtacgtaccga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2280~2400: Scer.....: ctactttatttttgcaggccggaaatcaagcgatgaatgagacatccttctgttttctatgttgtgcttgaaggggacagacagtcgcttatcttagtgagatttcttattaactgaatt consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 2400~2520: Scer.....: ttctttgctgctgctggagatttgcacctgcatagcgcagattctgcttcttctcaatagagtagcttaattattacattcttagatgatgataagacggaaactggacaatcttttgtt consensus: ************************************************************************************************************************ 2520~2640: Scer.....: tatattgatggatttcttgtcaaaaagcatagcaatcaacatactattgttaatttcgaaacttacaaaaataaaATGAAAGTTTCCGATAGGCGTAAGTTTGAAAAAGCAAACTTTGAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2640~2760: Scer.....: GAGTTTGAGTCGGCTCTAAATAACAAAAACGACTTGGTACATTGTCCCTCAATAACTTTATTTGAATCGATCCCCACGGAAGTGCGGTCATTCTACGAAGACGAAAAGTCTGGTCTAATC consensus: ************************************************************************************************************************ 2760~2880: Scer.....: AAAGTGGTAAAATTCAGAACTGGTGCAATGGATAGGAAAAGGTCTTTTGAAAAAATTGTCGTTTCCGTCATGGTCGGGAAAAATGTACAAAAGTTCCTGACGTTTGTTGAAGACGAACCA consensus: ************************************************************************************************************************ 2880~3000: Scer.....: GATTTCCAGGGCGGACCAATCCCTTCAAAGTATCTTATTCCCAAGAAAATCAACTTGATGGTCTACACGTTGTTTCAAGTGCATACTTTGAAATTCAATAGAAAGGATTACGATACCCTT consensus: ************************************************************************************************************************ 3000~3120: Scer.....: TCTCTTTTTTACCTCAACAGAGGATACTATAATGAGTTGAGTTTCCGTGTCCTGGAACGTTGTTACGAAATAGCGAGTGCCAGGCCGAACGACAGCTCTACGATGCGTACTTTCACTGAC consensus: ************************************************************************************************************************ 3120~3240: Scer.....: TTTGTTTCTGGCACACCTATTGTAAGGAGTCTTCAGAAAAGCACCATAAGGAAATATGGATACAATTTGGCACCCTACATGTTCTTGTTACTACACGTAGATGAGCTATCGATTTTTTCT consensus: ************************************************************************************************************************ 3240~3360: Scer.....: GCATACCAAGCAAGTTTACCTGGCGAAAAGAAAGTCGACACAGAGCGGCTGAAGCGTGATCTATGCCCACGTAAACCCACTGAGATAAAGTACTTTTCACAGATATGTAACGATATGATG consensus: ************************************************************************************************************************ 3360~3480: Scer.....: AACAAAAAGGACCGATTGGGTGATGTTTTGCATGTGTGCTGCCCAAGTTGAGAAGAGATACTAACAAAATGACCGCGGCTCTCAAAAATAATTGACGAGCTTACGGTGATACGCTTACCG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >========================================================================================== 3480~3600: Scer.....: TTATCCAGAGCTACAGCGCAACGTATACGTCGACGATACAACAAGAACGGTTCATCGGAGCCTCGACTAAAGACGCTTGACGGACTCACTTCCGAGCGCTGGATTCAATGGTTAGGCCTT consensus: ************************************************************************************************************************ known....: ======>= 3600~3720: Scer.....: GAAAGCGACTACCATTGTTCATTCTCTAGTACTCGGAATGCGGAAGACGTAGTGGCAGGTGAGGCGGCGAGTTCAGATCATGATCAAAAAATTTCAAGAGTAACGCGAAAAAGGCCCCGA consensus: ************************************************************************************************************************ 3720~3840: Scer.....: GAGCCCAAGAGTACAAACGATATCCTCGTCGCAGGCCGGAAACTCTTTGGCAGCTCCTTTGAATTCAGGGACTTGCATCAGTTGCGCTTATGTCATGAAATATACATGGCAGACACACCC consensus: ************************************************************************************************************************ 3840~3960: Scer.....: TCTGTGGCAGTACAGGCCCCACCGGGCTATGGTAAGACGGAGTTATTTCATCTCCCCTTGATAGCACTGGCATCTAAGGGCGACGTGAAATATGTGTCGTTTCTGTTTGTACCGTACACA consensus: ************************************************************************************************************************ 3960~4080: Scer.....: GTGTTGCTTGCTAATTGCATGATCAGGTTGGGCCGACGCGGTTGCTTGAATGTGGCCCCTGTAAGAAACTTTATTGAAGAAGGTTGCGATGGCGTTACTGATTTATACGTGGGGATCTAC consensus: ************************************************************************************************************************ 4080~4200: Scer.....: GATGATCTTGCTAGCACTAATTTCACAGACAGGATAGCTGCGTGGGAGAATATTGTTGAGTGCACCTTTAGGACCAACAACGTAAAATTGGGTTACCTCATTGTAGATGAGTTTCACAAC consensus: ************************************************************************************************************************ 4200~4320: Scer.....: TTTGAAACGGAGGTCTACCGGCAGTCGCAATTTGGGGGCATAACTAACCTTGATTTTGACGCTTTTGAGAAAGCAATCTTTTTGAGCGGCACAGCCCCTGAGGCTGTTGCTGATGCTGCG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 4320~4440: Scer.....: TTGCAGCGTATTGGGCTTACGGGACTGGCCAAGAAGTCGATGGACATCAACGAGCTCAAACGGTCGGAAGATCTCAGCAGAGGTCTATCCAGCTATCCAACACGGATGTTTAATCTAATC consensus: ************************************************************************************************************************ 4440~4560: Scer.....: AAGGAGAAATCCGAGGTGCCTTTAGGGCATGTTCATAAAATTTGGAAGAAAGTGGAATCACAGCCCGAAGAAGCACTGAAGCTTCTTTTAGCCCTCTTTGAAATTGAACCAGAGTCGAAG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 4560~4680: Scer.....: GCCATTGTAGTTGCAAGCACAACCAACGAAGTGGAAGAATTGGCCTGCTCTTGGAGAAAGTATTTTAGGGTGGTATGGATACACGGGAAGCTTGGGTGCTGCAGAAAAGGTGTCTCGCAC consensus: ************************************************************************************************************************ 4680~4800: Scer.....: AAAGGAGTTTGTCACTGAcggtagcatgcaagttctcatcggaacgaaattagtgactgaaggaattgacattaagcaattgatgatggtgatcatgcttgataatagacttaatattat consensus: ************************************************************************************************************************ 4800~4920: Scer.....: tgagctcattcaaggcgtagggagactaagagatgggggcctctgttatctattatctagaaaaaacagttgggcggcaaggaatcgtaagggtgaattaccaccgattaaggaaggctg consensus: ************************************************************************************************************************ 4920~4946: Scer.....: tataaccgaacaggtacgcgagttct consensus: ************************** { alias......: ['RPS11B'] chromosome.: 2 description: Ribosomal protein S11B (S18B) (rp41B) (YS12) end........: 333771 exons......: [(1, 45), (557, 982)] gene.......: RPS11B introns....: [(46, 556)] length.....: 982 name.......: YBR048W plength....: 327 start......: 332790 tdist......: 332790 type.......: ORF up.........: 1 } Scer: 2 donors and 4 branches Spar: 4 donors and 4 branches Smik: 4 donors and 2 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 560), ('Spar', 560), ('Smik', 560), ('Sbay', 560)] ->[('Scer', 1964), ('Spar', 1964)] ->[('Smik', 2024), ('Sbay', 2024)] ->[('Sbay', 32)] ->[('Sbay', 361)] ->[('Sbay', 1737)] ->[('Smik', 428)] ->[('Smik', 1833)] ->[('Spar', 1801)] ->[('Spar', 2040)] ] [ ->[('Scer', 525), ('Spar', 525), ('Smik', 525), ('Sbay', 525)] ->[('Scer', 1089), ('Spar', 1089), ('Smik', 1089), ('Sbay', 1089)] ->[('Scer', 1557), ('Spar', 1557)] ->[('Scer', 1888)] ->[('Spar', 438)] ] 0~120: Scer.....: agaaagctataaaaaatttg-aattatactcattcagttagttttttattagtaat---gtacaagtaaatagcgtataatatata---aaggttttacgtttctctcagtatctggga- Spar.....: gaaaaaaaattataaatttg-atatatattcattcagttggtcctttgacagcgat---gtacaagtaattagcgtatagtaaatatgtatagttttacgctctcgtcaatatctggga- Smik.....: .aaaaataatcgaattcttatatatatatatattcagttgaatctttgatagcaat---atataagtaaatagcgtatggaatatat--acggttcta------tgtcactatttga--- Sbay.....: gaaaaaaaaaaaaacgcttt-atataaatctggtatgccgatgaaaagttggtgcttcggtaacgatttataaagtagataaggtatttatagctttac-tttctgtcaatgttcaagac consensus: *** * * ** * ** * * * * * ** * ** *** * ** * * * ** *** * * Sbay_spli: DDDDDD 120~240: Scer.....: atgccttattatcgatatacacaagaatttctggaagaaatatttccttgctgcacccatacaatt-ctaaacccaaacatgtttcccgctttgtttttattccacactcgg---catat Spar.....: gtaccttattaccgttggaca--agattctctg-aaaaaacatttccttcccgcacccatacatta-ttaaacccaaacat-ttcagagcactgtctcttttccacgctgac---cgtat Smik.....: acacctc-ttgttgttacgcac---aacttttaaaagggagacttccttagtacacccatacaataattacacccatacat--ttattattcgttctctattctgtgtctat----gtaa Sbay.....: ataactt--caacg-tatacaagagtattttcgggacagctctctcgatattacacccata-actt-agaagcccatacaccaaaaaaatgcagactttctttcttgtaaagtcgcgtgg consensus: ** * * ** * * ** * ******** * * * **** *** * * ** * 240~360: Scer.....: tgcgtctatga---aaaaga----------tgcgaagtgtcttt-----gtgaaatgag---------gaagtgttctcgctagagtcc-gcctgg--ttccac-gccaacctttcagcg Spar.....: tgaccttatcatagaaaaga----------tgcgatgcgtcttt-----gtgaaatgaaa--------gaagtactctcgctggggtca-gccagg--ttccac-accatcctttcagcg Smik.....: tgaatttcattatgaaaaag----------tgcgtcttgt---------gtgaagcgag---------aaagcattcccactaaggccccgcccagattctcataatcatcccttcagcg Sbay.....: tgagcttcttcccaaaaaaagtgcgtctgctgcggatgacaactagcgagtggaccgagctctttctgggatcggcctcggtttagctt-gcctgg--cttgacagccttcctttcagcg consensus: ** * **** **** *** * ** * * * * * *** * * * ** ******* 360~480: Scer.....: ggcaagtccaatagctttacgtttccctt-ctctgctg-cgtctgttgaaaatctataatcaataggtaaaatagtgataataacatagctagtacaatttacatagtagcatttgctga Spar.....: ggcaagtccagtagctttgggtttccctttctctgctgtcctctgttgaaaatctataaccaataggta--atagtgatactaatatagctagtgcaatttatatagtagcgtttactga Smik.....: ggcacatcca-tagctttggatttccctttctctgctg---tctgctgaaaatcaacatccaagag-tgtta-agtgatagcataataggtggtgaaatttgtgtagtagagtttggtga Sbay.....: ggcatgttcggtagcctggaatgtcccgtcccctgccg-tccccgttgaaaacctacaacgaatagataatatagtgataataatagaggtggtgaaatttaaccagtggtatttggtaa consensus: **** * * **** * * **** * * **** * * * ****** * * * ** ** * * ******* * * ** * ** ***** *** * *** * * Spar_spli: BBBBBBB Smik_spli: DDDDDDD Sbay_spli: DDDDDD 480~600: total....: ======= ====== Scer.....: agacttagaggaaacgtatcaagccagggaaaaagATGTCCACTGAATTAACTGTTCAATCTGAAAGAGCTTTCCAAAAGGTATGAAAGAATTATAACCTGAA-TGAGGTAATCAATGAA Spar.....: agacttagaggaaacgtatcaagccagggaaaaagatgtccactgaattaactgttcaatctgaaagagctttccaaaaggtatgagtgaattacaacccgag-tgagataatcaatgaa Smik.....: aggcctaaagaaatcgtatcaagccagtgaaaa-gatgtccactgaattaactgttcaatctgaaagagctttccaaaaggtatgataaattc........................... Sbay.....: aaacttaaaggaaacgtatcaagccagggaaaaagatgtccactgaattaaccgttcaatctgaaagagctttccaaaaggtatgaatgatatccaatccaaaacgagagagtcaatgaa consensus: * * ** ** ** ************* ***** ****************** ********************************* * ** * * *** * ******** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB DDDDDD Sbay_spli: BBBBBBB DDDDDD known....: >======================================= 600~720: Scer.....: ATATTCAGTACGGAAAGGAAAATTGCTCGAGGTAATATT---ATAATTTTA-ATGGGAATTTCCAGATTTATCAACATAAACGTTAGCAAGCGCAGTACCATCAAGTAAAAGTTTACTGG Spar.....: gtattcaatacgaaaaggaaaattagtcgagataatgttgctatagtttta-caaccgatttccagattaatggaaagaaagagtggcaagcgctgtatc-tcaagaaaaaggccactag Smik.....: ............................................................tacctgatttatatata-aaaaagtggcaagcgcagtattgttg-ggagatgtttttgaa Sbay.....: gtgttcgagtgacaaaaggaaagcaagcgagataatgctattataaatttgcgctggaagctatataatta-----gtaaacgcta--aatcacgattctgttgaagaaaaagacac--a consensus: * *** *** * *** **** **** * *** *** * * * * *** * ** * * * * * * known....: ======================================================================================================================== 720~840: Scer.....: TGAAAAGCAGGAC--CTCGAAT--GATTGAGATT--TCGTTACACAGTACGAGTAAAAT-----ATAAAT----TATTT--CAAG--AAGAAGAGAACTTTTGATCTGAA---AATG--A Spar.....: ttgagagcaggat--ctcgaat--aatcgagagt--tcgc--cacaataagagcgaatt-----ataaat----caatt--ctagcaaaaaagggaactttcaacctaaa---gatg--a Smik.....: tgagaaactggaa-ttttaaatttattcaagagc--ttactatacaatgaggaaaaga--------aaac-----aatg--ctggcaaaaaaaagggtcatatatccaaagctaataaag Sbay.....: ttaggagcaggatgttttgaaa--actcgagaaaaatcacctcaaagcaagagagaaatgtggtataaacagcccagttgacatgagtaaaatagaacctgttatttgag---aatagta consensus: * * * *** * ** * *** * * * * * *** * * * * * ** * * * ** known....: ======================================================================================================================== 840~960: Scer.....: AAATGTAACCACGGAGAAA--TG-TTGAGAATACATAAATAACCATG-AGGCCAAAAC----ACCTTAATATGAAGTA-TAACTTTTACTGTGCTCA-ATGACTATTTCACCCGAC-TAA Spar.....: aa-tataaccgtgaaagaa--tg-ttgcaattacctaaattacgata-gagccaaaac-----ccataatcattacta-caacgttttctatgctga-atgactacttttatcggc-caa Smik.....: aagtgtaaacacggaagaaagtt-aaaaacactcatacaaaatcagacaaattattattctgacctatatcactaccggtagtatttactgtaatcacatgactactttttcactcatga Sbay.....: cacagcaattacagaaaaaactgcttgatttttttttaatgacgatgtgaaatgaacc----gcggttatctcaaact-agaacataactccgagaa-tttgacaaataaacaact-tgg consensus: * ** * ** * * * * * * ** * * ** * * * * known....: ======================================================================================================================== 960~1080: Scer.....: TGCCAA-GTAAGGAGGATCTCCATCATACGGAACAATTTTC--CAACCGCCACGACACAGTTAACGATTTCCTTTTCGCCTAAAAATAGTAGGAATGAAGTTCATGATTATATTTTAGAT Spar.....: taccaaagtaaggaaggt-tccatcttacgtaacgtttttcttcaatgactatgacacgctcaacgatttcctttttgcctaaaa-taataggaacgaaattcatgattatattacaaat Smik.....: ttctca---aagcaaggatccaccaaaattgaacgtgtttg--caataactatagctagctcaacgatttccttct-gcctaaaaataacaggaacgaagctcatgattacgatacttat Sbay.....: ttttga-ggatttaccatcattaaaatataaaatctgtccccccaaacccaatgagacaaccaatgttttccttttcaacagaaa---ctaaagacgaactcctcgattataatacgtac consensus: * * * * * ** * *** * * ** * ******* * * *** * * *** * ***** * * known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: CAACCGGTTTACTAACATGCTA---------TTTTTCATACAGCAACCTCACATCTTCAACAATCCAAAGGTCAAGACTTCCAAGAGAACCAAGAGATGGTATAAGAATGCCGGTTTGGG Spar.....: caactggtttactaacatgcta---------tttt--aaacagcaacctcacatcttcaacaatccaaaggtcaagacttccaagagaaccaagagatggtataagaacgccggtttggg Smik.....: aaataggtttactaacataata---------catttttaacagcaacctcacatcttcaacaatccaaaggtcaagacttccaagagaactaagagatggtataagaatgctggtttagg Sbay.....: gaatcactttactaacatgttaaatttttttttttgacttcagcaacctcacatcttcaacaatccaaaggttaagacctccaagagaaccaagagatggtataaaaatgccggtctagg consensus: ** *********** ** ** ******************************** ***** *********** ************** ** ** *** * ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =========================================>= 1200~1320: Scer.....: ATTCAAGACCCCAAAGACCGCTATTGAAGGTTCTTACATTGATAAGAAATGTCCATTCACTGGTTTAGTTTCCATCCGTGGTAAGATCTTGACCGGTACCGTCGTCTCCACCAAGATGCA Spar.....: attcaagaccccaaagaccgctattgaaggttcttacattgacaagaaatgtccattcactggtttagtttccatccgtggtaagatcttgactggtaccgtcgtctccaccaagATGCA Smik.....: tttcaagaccccaaagaccgctattgaaggttcttacatcgataagaaatgtccattcactggtttagtttccatccgtggtaagatcttgaccggtactgtcgtctctaccaagATGCA Sbay.....: tttcaagaccccaaagactgctattgaaggttcttacattgacaagaaatgtccattcactggtttagtttctatccgtggtaagatcttgactggtaccgttgtctccaccaagATGCA consensus: ***************** ******************** ** ***************************** ******************** ***** ** ***** *********** 1320~1440: Scer.....: CCGTACCATTGTCATCAGAAGAGCTTACTTGCATTACATTCCAAAGTACAACAGATACGAAAAGAGACACAAGAACGTCCCAGTCCACGTCTCCCCAGCTTTCCGTGTCCAAGTTGGTGA Spar.....: CCGTACCATCGTCATCAGAAGAGCTTACTTGCATTACATCCCCAAGTACAACAGATACGAAAAGAGACACAAGAACGTTCCAGTCCACGTTTCCCCAGCTTTCCGTGTCCAAGTTGGTGA Smik.....: CCGTACCATCGTCATCAGAAGAGCTTACTTGCATTACATTCCTAAGTACAACAGATACGAAAAAAGACACAAGAACGTCCCAGTCCACGTTTCCCCAGCTTTTCGTGTCCAAGTTGGTGA Sbay.....: CCGTACCATCGTCATCAGAAGAGCTTACTTGCATTACATTCCAAAGTACAACAGATACGAAAAGAGACACAAGAACGTCCCAGTTCACGTTTCCCCAGCTTTCCGTGTTCAAGTTGGTGA consensus: ********* ***************************** ** ******************** ************** ***** ***** *********** ***** *********** 1440~1560: Scer.....: CATTGTTACCGTTGGTCAATGTAGACCAATCTCCAAGACTGTTAGATTCAACGTCGTCAAGGTCTCTGCTGCTGCCGGTAAGGCCAACAAGCAATTTGCTAAATTTTAAagaaataaaat Spar.....: CATTGTTACCGTTGGTCAATGTAGACCAATCTCCAAGACTGTTAGATTTAACGTCGTCAAGGTCTCTGCTGCTACCGGTAAGGCCAACAAGCAATTTGCTAAATTTTAAagaaataaaat Smik.....: CATTGTTACCGTCGGTCAATGTAGACCAATCTCCAAGACTGTTAGATTCAACGTCGTAAAGGTCTCTGCTGCTGCTGGTAAGGCCAACAAGCAATTTGCTAAATTTTAAagacatgatct Sbay.....: CATCGTTACCGTCGGTCAATGTAGACCAATCTCCAAGACTGTCAGATTCAACGTCGTCAAGGTCTCTGCTGCTACTGGTAAGGCCAACAAGCAATTCGCTAAATTTTAAagaaaataaa- consensus: *** ******** ***************************** ***** ******** *************** * ******************** *************** * * Scer_spli: BBB Spar_spli: BBB 1560~1680: Scer.....: taacaagatgatataataataagtggaggata--aaacgtaggacttctggtgaattatttgaaccaaagtgtcgtatattaggctctttttctttttcttttacca---gacttggttt Spar.....: taacaagatgatataataataagtggagaata--aaacgtagaatctttggtgaattatttaaattgaagcgccaaatattaggcccttattctttttcttttacca---gccttagttt Smik.....: ttacaagatgagataaaaacaagtggagaatataaaacgcagaaagactggtgaatcatctgaattaaagtgtcacatattaggcctttgttcttttttttt--cca---gccctagttt Sbay.....: ----------------------------aaca--aaatataggataactggtaaataactcgaatgagtgtgtcgtattttaggcccttgttctttttcttttgccttacgccttgactt consensus: * * *** ** * **** *** * ** * * * ** ****** ** ******** *** ** * * * ** Scer_spli: BBBB Spar_spli: BBBB 1680~1800: Scer.....: ttttc------------tctctttagtaattgtttctatatatggcttatcaattctatatatttttt-aacttgaatatatgaatgacatctttaataatcacatctcggcaaacgact Spar.....: tcttcct----------tctctttagtaattgtttctatatacggcttatctattttatatattttt--aacatgaatatatgaatgacatttttaataatgacactttggcaaggcgct Smik.....: tttcct-----------tccttttagtaattgtttctatatacggctttcttattttatatattttt--aacatgaatatatgaatgacactcttaataatatcacttcggcagagcact Sbay.....: tttttttccttcccttctctttttagtaattgttt--atatatggcttacctattttgtatgtttttttaatataaatatatgaatgatatttttaataataaaatacaggcaagacact consensus: * * ** ************** ***** ***** *** * *** ***** ** * ************* * ******** * **** ** Sbay_spli: DDDDDD 1800~1920: Scer.....: gatgagttccacctgcttattgtttatttcctttcgt-acacgccgcgcttggccagtccttccaagaatgtaggcagaagaaat-caaactaacttgtaagagaaagaataaaattcat Spar.....: ggtgagt-ccaactgcttc---ttcattccctggcat-gggcgtcgcgtcgcgccagtctttgcaagaatttatgcagagaagac-cagttta--ttctgggacaaaaaataaa-ttcat Smik.....: tgcaaatttgtgcatattg---ttagttttctggtat-gagcgttgtaccgtgtcaaacttgccagtagttcagaaaaaaaaaaaacgcaacgtattctgagacaga---taaaattcat Sbay.....: tattcgttcctgcatattccaacatgatggctttcattgagcacagctccgcgcct-tactattattattggagaacgaggaaat-taaa-ta--cagtgaaataaaga-taaaattcat consensus: * * ** * ** * * * * * * * * * * * * * * * * * **** ***** Scer_spli: BBBBBBB Spar_spli: DDDDDD Smik_spli: DDDDDDD 1920~2040: Scer.....: tatacatataggtaaaa--taatataaatacaacggctccatgtgtaagttggaaataa----------aaacagttggcgtcaaggaagaaaaag-----aaagtcaatatcc--ggca Spar.....: tatacatataagtaaaaaataatataaatacaacggctccatgtgtaagtcgaaaacaa----------aaa-aattggtgtcaaggaaggaaaaag---aaaagtcaatatctctggcg Smik.....: aatacatagaggtaaaaa-taatatagatacaatagttccaagtgtaaaatgaaaaaag---------------gttggc--caatgaggtaaaaat---aaatgtcagtattc--ggca Sbay.....: aatacatatagataaat----atatagatacaacagttcaatatgtaatgtaacaaaaatacggtttataaaaagtagaagaaaaagaaaaacaaagtgaaaatgtcagtgtacccgata consensus: ******* * **** ***** ****** * ** * ***** ** * * * ** ** * ** ** **** * * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2040~2160: Scer.....: ataagtgaagacaa---gatttgccaaattg--ttacagggctaaaaaaaagataaatgatgaaaaataacgcgtac----tatcaa-acattattgagtttt---tcgctttcaccaat Spar.....: gtaagtgaaggca----gattagccaaatta--ttataggactgaaaaaagagaaatgaaggaaaaacaacacatacatactatcaa-tcattattgtattttgtttcgcttttgccaaa Smik.....: attaatgaaaata----aaccaactgaatca--taatgagacaggaaaaa-----aacaaagggaaataacatctacaatcaatcaccacaataaaattttctgagggatttcttttctt Sbay.....: ataaggaagaacagtgcagacaaacaaaccaaacgataagggagagaaaagggataataaagaaaaataacacatacaatcactgct-atgagataacatttttatttttttattttttg consensus: * * * * ** * * **** * * * *** *** *** * * ** * ** Spar_spli: DDDDDD 2160~2257: Scer.....: tatattttccggaa----------------------------------------------------------------------------------- Spar.....: tatacttcctggaa----------------------------------------------------------------------------------- Smik.....: tctgttttaccaaatataatctctggga..................................................................... Sbay.....: tgtgctttttgcaaatgaatcttgagtgggtaggaagggaagaagaggggggggatggggcgattgagatacactgcctagaattttttttctagat consensus: * * ** ** { alias......: ['ECM33'] chromosome.: 2 description: Homolog to sporulation specific protein SPS2 (S. cerevisiae) end........: 394818 exons......: [(1, 58), (389, 1737)] gene.......: ECM33 introns....: [(59, 388)] length.....: 1737 name.......: YBR078W plength....: 579 start......: 393082 tdist......: 393082 type.......: ORF up.........: 1 } Scer: 1 donors and 4 branches Spar: 2 donors and 4 branches Smik: 2 donors and 3 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 903), ('Spar', 903), ('Smik', 903)] ->[('Smik', 501)] ->[('Spar', 2271)] ] [ ->[('Scer', 1225), ('Spar', 1225), ('Smik', 1225)] ->[('Scer', 1616), ('Spar', 1616)] ->[('Scer', 2027), ('Spar', 2027)] ->[('Scer', 2153), ('Spar', 2153)] ->[('Smik', 2691)] ->[('Smik', 3007)] ] 0~120: Scer.....: attgcttcaatattttggataccgtttgctgctgataactgccttttttttttttcttcttatcttcccttaattaattcattagagtctttttagcttatatgccaaatgaagcaattg Spar.....: attggttcaattttgtgggtagcgtttcctgctgataactgc-----ttttttttctccttatcttcccttaattaattttttacaatcttttt-gcttatatgccaaatgaagcaatca Smik.....: gtttgtttaaattcgtggactgcaattcctactgataactgg-----cgtcctgttaccttatcttcccttaattgacactatgtagtcgtttt-ccttatatgcctaatgtagcaatcg consensus: ** ** ** * *** * ** ** ********** * * * ***************** * * * ** **** ********** **** ****** 120~240: Scer.....: tttttctttttcttcg--tctctctctccatattcacctgttacccag----agggcaccattcatatcattatcaacgtaaaatctgcgaattaccgtaaaccgcaaaaaaaaaag--- Spar.....: tctttctttttcttcg--tctcattcttcctattcacatatcacccga----agagcactattcatatcatcatcaacgttca-tcggtagattaccgtaaaccgcaaaaaaaaa----- Smik.....: tttttctttttcttttgctctcattcttccatattactggtcacccggcctggaactactatcaatatcatcatcaacgtaat-tccgcgaaaaaccataaaccgtaaaaaaaaaaaaca consensus: * ************ **** *** * * ** * **** ** ** ******* ******** ** * * *** ******* ********* 240~360: Scer.....: gatggcgggcagtatcatc---cttcacgacccgggtggctcgtgcgccctccggaaaaagaaatgaaatggagtgcaaaaacgggaaagacgcgccaccgtttctggcccacgcgctca Spar.....: gatggcgggcagtattatcattcttcacgactcaggtggctgctgcgccctcgcgaaaaagaaatggaatggagtgcaaaa-cgggaaagacgcgccaccatttttggcccatgcgctga Smik.....: gatggcgggtggtatcatc---cttcacgactcagatgactgctgcgccctcgcgaaaaagaaatggaatgaagtgcaaaa-cgggaaagacgcgccaccgttttgggaccacgggcttt consensus: ********* **** *** ********* * * ** ** ********* ************ **** ********* ****************** *** ** *** * *** 360~480: Scer.....: ttctcagtggccaggcactagagacaggactgaaaccgcgttaccacaacaaacaaaggcaacgtgcagtaaacaaccatccctcctgggatcgaaatcaaaagtacaaacctcagatcg Spar.....: ttcttagtggccaggcactgtagactgcactgggaccgcgttaccacaacaaacaaaggcaacgtgcagtaaacaaccatccctcctgggatcgaaatcaaaagtacaaacctcagatcg Smik.....: ttcttagcggccaggcactggatataacactacgaccgcgtcaccacaacaaacaaaggcaacgtgcagtaaacaaccatccctcctaggatcaaaatcaaaagtgcaagcttcagatca consensus: **** ** *********** * * *** ******* ********************************************* ***** *********** *** * ******* 480~600: Scer.....: aactgaaaaattttcggtagcgtgcttgagccggtataaatattcaatgtcaaacacctacgacttt-cgcaatcaacggacctctcttgcatttttgtatttaatatgtgaagatcttt Spar.....: aactgaaaaattttcggtagcgtgcgtgagccggtataaatattcactgtcaaacacttatgccttttcgcaatcaacggatctttcttgcatttttgtatttaatgtgtgaagatcttt Smik.....: aactgaaaaattttcggtagcgtacgtgggccggtataaatattcactgccaaacacagatgtcacttcgctatcaacgggtctttcttgcatttttgtatttaatgggtaaagctcttt consensus: *********************** * ** ***************** ** ******* * * * * *** ******** ** ********************* ** *** ***** Smik_spli: DDDDDD 600~720: Scer.....: cctctgcattttctttcctt-ctttatctttcttggcttttcaccctttctcttctttttagaacatcatctttgagtacttcggccacttttagaaaagaaattaaataaaagagttaa Spar.....: cttctgcattttcattcctttctttatctttcttggctttttacccttcctctt--tcttagaacaccatctttgagtacttaggccacttttaaaaaagaaattaaataaaagagttaa Smik.....: cttgtacatttcctttttct--tttatcttttttggcttttcactatattcttt---tttaggaaacc.................................................... consensus: * * * ***** * ** * ********* ********* ** * ** **** * * *************** *********** ************************* 720~840: Scer.....: tcgttcattcgcttctacacagtttaatcttttccatttttctttcaacaagtccctttgagctatcaagaatacgtttatttgacttttaaagatctagttttaatttt-actattatt Spar.....: tcgttcactcgcttctacacagtttaatcttttccatttttatttctacagatcccttcgagctattaagaatacctttatttgacttttaaagatctagttttattttttactattatt consensus: ******* ********************************* **** *** ****** ******* ******** ***************************** **** ********* 840~960: Scer.....: ccgcaATGCAATTCAAGAACGCTTTGACTGCTACTGCTATTCTAAGTGCCTCCGCTCTAGCTGGTATGTACACATTCTCCTTTTTTTTCATCTTTTTT---TCTTTATTTGCCTCTTTCC Spar.....: ccataatgcaattcaagaacgctttgactgt---tgctcttctaagtgcctccgctctagctggtatgtagacattctcctgttttct---tcttttt---tctttatttgccactttta Smik.....: ..ataatgcaatttaagaacgctttgaccgttactgctctcctcagtgcttccgctcttgctggtatgtttatttcctccttttttgtttaattttttatctccctatttgccactacta consensus: ** ********* ************** * **** * ** ***** ******** ********** * * ***** **** * ***** ** ******** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: >======================================================== 960~1080: Scer.....: TCACAAATCT-----------CGAGTAGATTCGTGGTCCTCTTCATTCTTTTCTTTTTTCTTTGTCGATTACTGGGCTTTTTTTCATA---GGTCTCGATTGACGCGGACGGACAATGCG Spar.....: ctttaagcctgcttcttcctcctcacaaattc-cagctgttttcgtggttcttttttttttcttttgattgaaggcctttttttttcac--ggtctcgacgaacgcggacggacgatgtg Smik.....: ttttaagtct-----------------gtttc----cttttctcacttgtttcattaaactgggccagtggctctttttttttttttcatggatctcgatgaaagcgggcgaa--atgcg consensus: ** ** *** * ** * * ** * * ******* * ****** * **** ** * *** * known....: ======================================================================================================================== 1080~1200: Scer.....: AAAAAAAAAAATTTCCAAAAGAGGAAA-CGGGTTTCGAGATCTCGTGA-GGATGGTTTTGGAATATTCTTCAATATTTCTGCC-TGTCATAGGATTAGGGCGAGTAATGAAACAGAATAA Spar.....: tg-----aaaatttccacaataggaaa-catgtttcgagatctcctga-gaacaaattcagagtattcttcactattttggcagtaatgtacagttagggcaaataataagacagaataa Smik.....: aa-----agaatttccagaataggaaatcgtgtttcgagatctcgcaaaggacattttggaaatacttttcacatttttgactaagatgtagaaatagggtagataATGAGACATGTCAA consensus: * ******** ** ****** * ************* * * * ** * ** * **** *** * ** ***** **** * *** ** known....: ======================================================================================================================== 1200~1320: Scer.....: --TACATGTATAAATCGATCGGGAATACTAACACTACTTTTCTTTATCTAAGCAGCTAACTCAACTACTTCTATTCCATCTTCATGTAGTATTGGTACTTCTGCCACTGCTACTGCTCAA Spar.....: cgtatatctataaatctatcgggaatactaacactaatttcttt--------cagctaactcatctacttccattccatcttcatgtagtattggcactgaagccaccgctactgctcaa Smik.....: CATA-GTTTATAAATCAATCTGGAGTACTAACATTACATTTTTA-ATCTCAACAGCTAGCTCTTCCTCTTCTATCGCCTCATCGTGTAGTATTGGTTCTCAAGCGACCGCTACTGCTCAA consensus: ** * ******** *** *** ******** ** ** * ****** *** * **** ** * ** ** *********** ** ** ** ************ Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB known....: =====================================================>= 1320~1440: Scer.....: GCTGATTTGGACAAAATCTCCGGTTGTAGTACCATTGTTGGTAACTTGACCATCACCGGTGACTTGGGTTCCGCTGCTTTGGCTAGTATCCAAGAGATTGATGGTTCCTTGACTATCTTC Spar.....: gctgatttggacaaaatctctggctgtaacaccattgttggtaacttaaccattaccggtgacttaggttctgctgctttggctagtatccaagagatcgatggttctttgaccatcttc Smik.....: GCTGATTTGGACAAAATCTCAGGCTGTGAGACCATTGTCGGTAACTTGACCATTACCGGTGACTTGGGTTCAGCTGCCTTGGCTAGTATCAAAGAGATCGATGGTTCTTTGACTATCTAC consensus: ******************** ** *** ******** ******** ***** *********** ***** ***** ************ ******* ******** ***** **** * 1440~1560: Scer.....: AACTCCAGTTCTTTATCTTCTTTCTCCGCTGACTCTATCAAGAAAATCACCGGTGATTTGAACATGCAAGAATTGATCATTTTGACCAGTGCTTCTTTCGGTTCTTTGCAAGAAGTAGAC Spar.....: aatgccacttcactatcttccttctccgctgactccatcaagaaaatcaccggtgatttgaacttgaaggaattgactattttgaccagtgcttctttcggctctttgcaagaagttgac Smik.....: AATGCCTCTTCTTTATCTACTTTCTCCGCTGATTCTATTAAAAAAATCACTGGTGATTTGAACCTAAAAGAATTGTACATTTTGACTAGTGCTTCTTTCGGCTCCTTACAAGAAGTCGAC consensus: ** ** *** ***** * *********** ** ** ** ******** ************ * * ****** ******** ************** ** ** ******** *** 1560~1680: Scer.....: TCCATTAACATGGTGACTTTGCCTGCCATTTCTACCTTCTCCACCGATTTACAAAATGCTAACAACATTATTGTTTCTGACACCACTTTGGAAAGTGTCGAAGGTTTCTCCACTTTGAAG Spar.....: tccatcaacATGGTCACTTTGCCTGCCATTTCTACCTTCTCCACCGATTTACAAAATGCTAACAACATTATTGTTTCCGACACTACTTTGGAAAGTGTTGAAGGTTTCTCCACTTTGAAG Smik.....: TCCATCAGCATGATCACTTTGCCTGCCATTTCTACTTTCTCTACTGATTTGCAAAACGCTAACAACATTGTGATTTCAGACACCACTTTGGAAAGTGTTGAAGGTTTTTCTACCTTGAAG consensus: ***** * **** * ******************** ***** ** ***** ***** ************ * **** ***** ************** ******** ** ** ****** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 1680~1800: Scer.....: AAGGTTAATGTTTTTAACATCAACAACAACAGATATCTAAACTCTTTCCAATCTTCCTTGGAAAGTGTCTCTGACTCTTTACAATTCTCTTCCAACGGTGACAACACTACTTTGGCCTTC Spar.....: AAGGTCAACGTTTTCAACATCAACAACAATAGATATCTAAACTCTTTCCAATCTTCCTTGCAAAGCGTCTCCGATTCTTTACAATTCTCTTCCAACGGTGACAACACCACTTTGACTTTC Smik.....: AAGGTTAATGTTTTCAACATCAACAACAATAGATACTTGAACTCCTTCCAATCTTCTTTGCAAAGTGTTTCCGATTCTTTACAATTCTCTTCTAATGGTGACAACACCACCTTGGCCTTC consensus: ***** ** ***** ************** ***** * ***** *********** *** **** ** ** ** ***************** ** *********** ** *** * *** 1800~1920: Scer.....: GACAATTTGGTCTGGGCTAACAACATCACTTTGAGAGATGTTAACTCTATTTCTTTCGGTAGTTTGCAAACTGTTAACGCTTCCTTAGGTTTCATTAACAACACTTTGCCAAGTTTGAAC Spar.....: GATGATTTGGTCTGGGCCAACAACATCACTTTGAGAGATGTTAACTCTATTTCTTTCGGTAGTTTACAAACTGTTAACGCTTCCTTGGGTTTTATTAATAACACTTTGCCAAGTTTGAAC Smik.....: GATGATTTAGTCTGGGCCAATAACATCACCCTGAGAGATGTAAACTCTATTTCTTTCGGTAGTTTGCAAACTGTTAACGCTTCCTTAGGTTTCATTAACAACACTTTGCCAACTTTGAAC consensus: ** **** ******** ** ******** ********** *********************** ******************** ***** ***** ************* ******* 1920~2040: Scer.....: TTGACCCAATTGAGCAAGGTTGGTCAATCTTTGTCTATCGTCTCCAACGATGAATTATCCAAGGCCGCTTTCAGTAACTTGACTACTGTTGGTGGTGGTTTCATCATTGCTAACAACACA Spar.....: TTGACCCAATTGAGTAAAGTCGGTCAATCTTTGTCTATCGTATCCAACGATGAATTATCCAAGGCTGCTTTCAGTAATTTGACTGCCATTGGTGGTGGTTTCATCATTGCTAACAACACC Smik.....: TTGACTAAATTGAGTAAGGTTGGTCAATCTTTGTCTATTGTATCCAACGATGAAtt................................................................ consensus: ***** ******* ** ** ***************** ** *********************** *********** ****** * ******************************* Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2040~2160: Scer.....: CAATTGAAGGTCATTGACGGTTTTAACAAGGTTCAAACTGTTGGTGGTGCCATTGAAGTTACTGGTAACTTCTCAACCTTGGACTTATCTTCTTTGAAGTCTGTTAGAGGTGGTGCTAAC Spar.....: CAATTGAAGGTCATTGACGGTTTCAACAAGGTCCAAACTGTTGGTGGTGCCATTGAAGTTACTGGTAACTTCTCGACTTTAGACTTGTCTTCTTTGAAGTCTGTTAGAGGTGGTGCTAAC consensus: *********************** ******** ***************************************** ** ** ***** ********************************* Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2160~2280: Scer.....: TTCGACTCTTCTTCCAGTAACTTCTCCTGTAACGCTTTGAAGAAGTTGCAAAGTAACGGTGCTATTCAAGGTGACTCTTTTGTTTGCAAGAACGGTGCCACATCTACCTCCGTTAAGCTA Spar.....: TTCGACTCTTCTTCTAGTAACTTCTCTTGTAATGCTTTGAAGAAGTTGCAAAGTAACGGTGCTATTCAAGGTGACTCTTTCGTTTGTAAGAACGGTGCTACATCTACCTCCGTTAAGTTG consensus: ************** *********** ***** *********************************************** ***** *********** ****************** * Spar_spli: DDDDDD 2280~2400: Scer.....: TCCTCTACTTCTACTGAATCATCCAAGAGCTCTGCTACATCTTCCGCTTCTTCTAGTGGTGATGCCTCCAATGCTCAAGCTAACGTTTCAGCTTCCGCTAGCTCTTCTTCCTCTTCTTCT Spar.....: TCTTCCACTTCTACTGAATCTTCCAAGAGCTCTGCCACATCTTCTGCTTCTTCCAGCGGTGATGCTTCCAATGCACAAGCTAACGTTTCAGCTTCCGCTAGCTCTTCTTCCTCTTCTTCT Smik.....: ......................................................cgtggtgatgactccaacgctcaagctagcgtttcgggttcttccacctcttctt------cttct consensus: ** ** ************** ************** ******** ******** * ******* ***** ** ******* ****** * *** * * ******** ***** 2400~2520: Scer.....: AAGAAGTCTAAGGGTGCTGCTCCAGAACTTGTTCCAGCCACTTCATTCATGGGTGTCGTTGCTGCTGTTGGCGTTGC-TTACTATAAGATTAAAGCAACAATTTGTGTTTCTATTATTAC Spar.....: AAGAAGTCTAAGGGTGCTGCTCCAGAACTTGTTCCAGCCACTTCATTCATGGGTGTCGTTGCTGCTGTTGCCGTTGCCTTACTATAAaattaaagcaacaatttgtgtttctattattac Smik.....: aagaagtctaagggtgctgctccagagctcgttccagctacttcattcatgggtgtcgttgctgctgttgccgttgccttactataggattaaagcaacaatt-gtgtttttattattac consensus: ************************** ** ******** ******************************* ****** ******** *************** ****** ********* 2520~2640: Scer.....: TTTAATTTCTTCTC---TAATGATTTCTTTACCATTCCTTTTTTATTATGAGACGGTTGGTTCATCACTGAATTTTATATGTAGATAAaattttagtgtcgttaatatctcttttatttc Spar.....: tttaatttcttctcctctaatgatttctttaccattctttttt--ttatgagacggttggttcatcactgaattttatatgtagataaacttttggcgtcgttaatatcttttttatttc Smik.....: tttaatctcttctcctctaatgatctctttaccattcttttttatttatgagacagttggttcatcactgaattctatctatagatgaaattttagtgtctttaatatcttttttattat consensus: ****** ******* ******* ************ ***** ********* ******************* *** * ***** ** **** * *** ********* ******* 2640~2760: Scer.....: ttattgttactatattattactgttttgaagttccagtttcatc-aacttttgctaccttaattaaaagaaccactcagacttttt----accatcctttagctttacctaatataatga Spar.....: taattgttactatattattactgttttgaagttccaatttcatc-aacttttgctagccaaattaaaagaaccactcagactttttt---acaatcccttagctttacctaatataatga Smik.....: t---tgttactatattattgctgtttcgaagttccactttcactgaaattttgctaactaaattaaaagaacaactcggacttttttgttacaattctttagttttgtctgatataatag consensus: * *************** ****** ********* ***** ** ******** * ************ **** ******** ** ** * **** *** ** ******* Smik_spli: BBBBBBB 2760~2880: Scer.....: aatttgtctaagtaacataaaaaaaaggagtaaagaaaaaaaaaaaataagtaaatgaaataaaatataaaaaaattcttactacggtttaaaacaaagtgctcttccgctaacgtttca Spar.....: aatctgtctaagtaattaaaaaaagaaaggaagtaaagaaaaaaaaataagtaaacaaaataaaatgtaaaaaaattcttactacggtttaaaa-aaggagcttttttgttaacgtttca Smik.....: aaatcgtctaagtaact---aaaaaagaaacaagtaaagaaaaaaaataagtaaatgtaataaaatataaaaaaattcttactacggtttaaaaaaggtgttctttttgttattgttcca consensus: ** ********** **** * * ** **************** ******** *************************** * ** * ** *** ** 2880~3000: Scer.....: agtttctaaagaatcgttagggccttttaacggatcgcttttttaaaacagtaaaacgttatttatagttattt-ataccaac-tatttctcgaaattcgtttttaaaataactgccatc Spar.....: agcctctacggaatcgttagagttttttaacggattgttttcttgaaatagtacaatattatttatacttattt-atatcaat-tagttctcaaaattcatttcgaaaactacagttatt Smik.....: agtttat-tagaatggttggaattttttagcgaattggctccctgaaatggtacaatattttatatactttttttatgttgatattagttttgagaactgttacgaacatgacagcgatc consensus: ** * * **** *** * ***** ** ** * * * *** *** ** ** * **** ** *** ** * * * * * * ** ** * ** * ** 3000~3120: Scer.....: tttactgctcttctgctccttccttt-----gacatgaaaaagcaatcagaaagaaatagtctaataaattgtta-ttatgtacacatactcttatacgtataaaaaac-g--------- Spar.....: tacactgctcttctcctttcttatcaacagggagaaaaaaaacaattcgaaaagaaatagtctaaaaaattgttaattatgtacatat-ctcttatacgtataaaaaag-gtataaaaaa Smik.....: aatactgcactaacgttactttggtt---------aaaagaataaa--aggaaaaaatagattcaaagactgataattatgtacacacgctctcctatatatagaaaacagcatttgaga consensus: ***** ** * * ** ** * ** ****** * * * * ** ** ********* * **** ** **** **** * Smik_spli: BBBBBBB 3120~3157: Scer.....: --gtataaa--ttaagtagatcattttgcgttgtctg Spar.....: aggtataaa--tcaaatagatcatcttgcgttatcta Smik.....: aagaataaaattttcaccgaccatcttacgtaataaa consensus: * ***** * ** *** ** *** * { alias......: ['UBC4'] chromosome.: 2 description: ubiquitin-conjugating enzyme end........: 407127 exons......: [(1, 47), (143, 542)] gene.......: UBC4 introns....: [(48, 142)] length.....: 542 name.......: YBR082C plength....: 180 start......: 406586 tdist......: 406013 type.......: ORF up.........: 0 } Scer: 5 donors and 2 branches Spar: 23 donors and 4 branches Smik: 3 donors and 0 branches Sbay: 7 donors and 7 branches INTRON SPLICING FOUND!! [ ->[('Scer', 2167), ('Spar', 2167), ('Sbay', 2167)] ->[('Scer', 3569), ('Sbay', 3563), ('Sbay', 3567)] ->[('Sbay', 433)] ->[('Sbay', 1563)] ->[('Sbay', 3362)] ->[('Sbay', 3398)] ->[('Scer', 1008)] ->[('Scer', 1096)] ->[('Scer', 3989)] ->[('Smik', 20)] ->[('Smik', 634)] ->[('Smik', 3642)] ->[('Spar', 2685)] ->[('Spar', 3782)] ->[('Spar', 4010)] ->[('Spar', 4145)] ->[('Spar', 4190)] ->[('Spar', 4280)] ->[('Spar', 4300)] ->[('Spar', 4572)] ->[('Spar', 4715)] ->[('Spar', 5145)] ->[('Spar', 6631)] ->[('Spar', 6712)] ->[('Spar', 6968)] ->[('Spar', 7046)] ->[('Spar', 7737)] ->[('Spar', 7820)] ->[('Spar', 7984)] ->[('Spar', 8171)] ->[('Spar', 8198)] ->[('Spar', 8249)] ->[('Spar', 8804)] ->[('Spar', 9306)] ] [ ->[('Scer', 2254), ('Spar', 2254), ('Spar', 2248), ('Sbay', 2254)] ->[('Spar', 2884), ('Sbay', 2884)] ->[('Sbay', 2588)] ->[('Sbay', 4652)] ->[('Sbay', 4670)] ->[('Sbay', 4960)] ->[('Sbay', 5147)] ->[('Scer', 3875)] ->[('Spar', 5195)] ] 0~120: Scer.....: -ggttaaacaggtatcagaattgttgaaatagg-tggattattct--tcttgtcgatatgggaggaatctgg---caccagtcgaagaatctcc---tgtttcataaacatttataaaag Spar.....: -ggttaaacagaaatcagaactgttagaatagg-ttaatttttcttctcttgctgatatgggaagaatctga---caccagtcaaagaatctcccaacgtttcataaacatttataaaag Smik.....: ggttttaacaaaaatctatagtatgagaatatg-ctgatttttcttttcctgctaatatggaaaaaacctgg---caccactcaaa-tatttcctagtgtttcataaacatttataaaag Sbay.....: -ggtagaaca---acctgtagtattagaataagtttaacttttcttctcttgccgttgtgaaagaaatcttgctccaccagtaaaaatatttttt-atgtttcataaacatatataaaag consensus: * * **** * * * * * **** * * * **** ** ** * ** * ** ** ***** * ** ** * ************* ******** Smik_spli: DDDDDD 120~240: Scer.....: taagaaaagggttgtcatatgtaaaaaattaagcaagccttttgtttcaaacttaatatatacctctgcggggga-attacttttttggtaataagc-tattttctccagctatgggccg Spar.....: caagaaaagggttatgatacgtaaaaaattaagcaagccttttgtttcaaacttaatatatacctctgcggagga-attacttttttggcaataagc-tattttctccagctatgggccg Smik.....: caag-aaagggttgtgatatgcaaaaaagcaagcaatccttttgtttcaaacttaatatatacctctgcggaggatattacttttttggcaataaac-tattttctccagctatgggccg Sbay.....: caag-aaagggttgataaatgcaaaaaactcagcaagcccttcgtttcaaacttaatacacatctctacggatga-attacttttttggcaataagctttttttctccagctatggaata consensus: *** ******** * * * ****** ***** ** ** *************** * * **** *** ** ************* ***** * * **************** 240~360: Scer.....: taccatcgagagaaactccag--caccatggattgctgatggtagctacaggtgc----tttttaactgtgcatgagc----caagagccttgtgagggaccattc-gtggagtccagct Spar.....: taccatcgagagaaactccag--caccatggattgctgatgttgactactggcgc----ttctcaactatgcatgagc----caagagccttgcgagggaccattc-gtggagtccagct Smik.....: taccattgagagaaactccag--taccatggattactggtattgactaccggcgc----ttctcaactgtgcatgagc----caagaactttgcgaggaaccattc-gtggagtccagct Sbay.....: tcccacgaagagaaactgcaggacaacagggattgccggtattaaatgttggtgccgcatttctaggcctgcatgagccaagcaagagccctgcgaaggaccttttggtggagtccagct consensus: * *** ********* *** * ** ***** * * * * * ** ** ** * ********* ***** * ** ** * *** ** ************* 360~480: Scer.....: cagcttg----tttccggagagtttcccagaataataagcaaacgcaatctgaaacacgcacattcccgaattcaatgggaaattctttgagtcgtacgcggaatgcgagcggtgccggg Spar.....: cagcttg----tttccggagaatttcccagaatagtaagaatactcaatctgaaacacgcacattctcgaattcaatgaaaaattcttcgagtcctacgcggaatgcgagcggtgccggg Smik.....: cagcttg----tttccggagaatttcctagaagagtaagaatacgcaatctgaaacacgcacattctcaagtccagtaagaaattctttgagtcgtacgcggaatgcgagcgctgccggg Sbay.....: aagcgtggtgttctctggagaatttcccagaagagtaagaatacgcaacctgaaacacgcacattccgaatctgtatgagaaattcttcgagccgtccgcggaatgtcagcggtcccggg consensus: *** ** * ** ***** ***** **** * **** * ** *** ***************** * * ******** *** * * ********* **** * ***** Sbay_spli: DDDDDD 480~600: Scer.....: gaattccaatgaggctgattaaaccggactacgggcaaaatggctca-tctgaaacaccttgc-gccgataaaagaccctcacctgtgtcactaaatggaaagagttggcgtaaa-atct Spar.....: gaatcccaatgaggctgattaaaccggactacggccaaaatggctcactctgaaacaccttgc-ggcgataaacgaccctcaccggtgtcactaaatggaaagagttggcgtaaatatct Smik.....: gaatcctaatgaggctgaataaaccgaactacggccaaaatggctcactctgaaacatcttgt-ggcgataaacgaccttcatcggtgtcactaaatgagaagagttagcgtaaacacct Sbay.....: gcctgccaacaaggctgatcaaaccggagtacggtcaaaatggctcactctgaaacatcctacgggcgataaacgacctttgccggtgtcactaaatgggaaacgttggctttagcatct consensus: * * * ** ******* ****** * ***** ************ ********* * * * ******* **** * * ************* ** *** ** * * * ** 600~720: Scer.....: tcctgtaaaaggatctcaccatttt--------ggcctaa--aacatcatcatatctgttttcgtggaaaaaaaaggccgctcatacatgaatacagtgggcacatgccacctgttattc Spar.....: ctctgaaaaagaatcttaccacttt--------ga--tgc--aacataatcgtggctgttttcgtgggaaaaaaagaccgctcatacataaaaacagtggggacgtgccgcctagtattt Smik.....: ttctgtaaaaagatcttaccacttc--------ggttcgt----aaatatcatggctgtattcgt-gagaagaaggaccgcacataagtaaggacagtaagaacctgccacttgatgttc Sbay.....: ttgt---aaggaatctcaccactttctcaagcggacccgccgagaaacgccatggttgttttcgt----aaaagggaacgctcatacttaagagc-gtgtatagaaaccgcgtcatttcc consensus: * ** **** **** ** * * * * *** ***** ** * * *** **** * * * ** * ** * * * * Smik_spli: DDDDDD 720~840: Scer.....: catagctggctt--------tactgtaata-------ttagaatagttcctatctgtgtgaaaagt-ttct--ttcgttacc-tttttttcagagtcaaaagctggaggaggctattgta Spar.....: cttagctggttt--------tactaaaata-----tgttagaatactttccgtctgtataaaacgt-ttctcctttgttacctttttttttggtgtcaaaagttggaggaggctaattta Smik.....: catggctgactt--------tagtaagctg-------ttagaatagtttctagctggctaaagactttctctttttgttacttgtactgttggtgtcgggtattggaggagactagttta Sbay.....: tgaggccggcttcgatcttacgttggagtagggcccgtttggctatttttagtctgagcgccaaatgttcaagaaggcgggtgttttgatttgccatagcgtgcagtgcagtgcactgca consensus: ** * ** * * ** * ** ** *** * * * * * * * * ** * * * 840~960: Scer.....: cttgcctgtagttccaggtaacaatcgcttaagcagtgagcccgcttaatgagagcaagttatatatgttttgctaaaacctgccagattctcagcctagaagatataaatctaacgtgg Spar.....: attgcgtgtagttcctggcaacaatcgcttcatcaggttgaccacttga-aagagcaaattgtgtatattttgctaaag-ctcctagtttttcaacctaaaagacatatgattaccgtgg Smik.....: gttgcgtgtcgtgctgggcgacaattgttccaccagtaaggccgaactaagggaacaaaatgtgttgattacgttcaagtgtgctaatatctcaaccttaaagggataaattaatgttg- Sbay.....: gtgcactgcagtacagtgtagtgtcttttgcaacaatcggttcacatga-gagagtgcggttcggataaaagggccaag-atacggctactcaaacggaaaaagtatatatctatatcaa consensus: * ** ** * * * * ** * * * ** * * ** * * * * ** *** * 960~1080: Scer.....: -atttgttacaggctgtcataccttatgtacttacgcatcgtat-cttgtatgtgttcacttttttctggtaactacac-cacttggcttaaccttgccaggaaccgag--taggc-cac Spar.....: cttttattacaggcaatcatactgtgtttgcttaggcgtgatat--ttgtctgtatccact--tttctgtttattatgc-t-cttgatttaatcttgccggcaatcgtg--taggctcgt Smik.....: -ttttgttacacacaggcgta-tatgtttacctgtacgccatat--ctgactgtattcact--ttttcggcttacaca----tttggaatagtcctagta-taattgagtatatta-tat Sbay.....: cacttg-gatagagagtggctttgttttagcatcggcg-gatgtgtttgcgcagacatggttcactttgctctgcacacgtacagagcataatcttgccggcaacggaaattcgaaatcg consensus: ** * * * * * * * * * ** * * * * ** * * ** * * Scer_spli: DDDDDD 1080~1200: Scer.....: acatgttttgaatattgtaagt-gtgtacaataagctgcagtactcttttgattctgtaggaaaccagcgaagaacgtact-cttgcctgaagagaagttttttt--tatttatttatat Spar.....: acgcgttctgaatactgtgaat-gtatacaataagctgctgtact-ttttggttctgtgggaaactagtgaagcactttctgtttgcctgaaa-------tgctt--tttttatttatat Smik.....: acgtgttttggctacgttgaggagatgctagtaagctatcgcactttcttgactttataaaaaa-gagtcaagtatattc--ttctcataattagtaatcatttttttttccatttatgt Sbay.....: atatttcttcgctttgcttatcggaagacatgtaaatgcttgaccgtctctgtcctagaagtaatcggcacagaatggctt-tttttttggtctatagtatatttaagttttatttatat consensus: * * * * * * * * * * ** * * * ** * ** * * * ** * ****** * Scer_spli: DDDDDD 1200~1320: Scer.....: tttgttctggaagctctttacagaatggagtaggaaaatatatagagaggaaaagcgaaatcgttacgagaataaataatcaagaaaagaaacttgaacttggcttttccaaaacaacag Spar.....: tttgttctggaagctctttatgcaatagaagcagtgaagacataaa---aaaaaccccaaacataacaacaataaataagcaagaaaaggaacttgagctcacacatttc-aaacaacag Smik.....: tttgctttggaaagtgttgcgagggtggaattgaaaacacaaatac--ttaagacacaaaaca----atcaataaataatcaagaaaa-gtactaagctcatttctctttgaaacaataa Sbay.....: tttgttcttcacggcgtccttgcagcccacttcacagctcttctac--gaaaaataggacaca-aactataataaacagccaaga----ccacacagattcaaccgtatcaaaaaaaaag consensus: **** * * * * * ** * * * ****** * ***** ** *** ** * 1320~1440: Scer.....: aagtagcgttaattt--actttcaccgt--aaaattcaactctttaaatatagtccacttagt----------aaattcttgccaatttgcatgataaattcgaacccattcctc--aaa Spar.....: aagcaaggtctcttt--attttcacagt--aggattcaaccctttaaatatggtctacttagt----------aaattcttgccaatttccatgaaaaatcggaacccattcctt--aaa Smik.....: aatctgaagcaattt--acttccctgat--agagtctaactgtttaattatcgtttaagtagc----------gaatttctgtcaattattgaaata-atcagaacccttccttc--aaa Sbay.....: aaaatgtccaacctccagccctcacaaccaagaattatactttttttccaattggcacttagcagccagcaaaaatttggtgctagatagaaaagaatttgggggctcattccctccaac consensus: ** * * * * ** *** * * *** * ** ** * * * * * * * * * ** 1440~1560: Scer.....: ataaagggtcctcatacattcca-tggaaagaaagttttcttgaaca-ttaagaataaaaaggcaaaaaagaaaaaaaaaagcacagctactgttttagtcaacattcctttctcactgg Spar.....: ataacgggtcctgatacattcca-taggaagaaagttttcttgaacg-ttacgaat-aaaagacaaaaaacaagtta-----cataactactatttttgtcaacattcctccttcactgg Smik.....: aaaaagggtcctaatgcattctaccatgaagaaggttttcttaaata-ttaaaaatgaggaggaaaaagacaagtgc-----ggttgtcactattttcaccgacattcctcttcttctag Sbay.....: ttaaaagaccgccacattctttc-gggaataaaagtctttcccgtcacttacgaa--aaaaaaaaagagaccaaaaacaaa-catagcagtcattcctgccagcattccgcactttctgg consensus: ** * * * * * ** ** ** *** ** * * ** * * * ** * ****** ** * 1560~1680: Scer.....: aatgcacaaggtgtcattcctgaacaagggtaactgcactattcatatgtccaccttatgacttcataaaaagtttgacaataagtagtcttacgtgataagaaatgatgtaacataagg Spar.....: aatgcgcaaggtgtcattcttgaat-atggtgactagattactcacttctcctc-----gatttcaaaaaaa---caacaacaattaatcttacgtgacaagaaatagtttagcgcaatg Smik.....: aatgtgcaagttatcattcttgaat-atggtgactgcgttgttcattcttac-------agctccaaaaaga---aaagggtaatcagtcttacataacaagaaataatccagcacaaga Sbay.....: aatgtatgagatgccattcttgagc-gtagtgagc-caccat--actccacccctggtacttttcaaaaaa----gtacaagaatcgggcctatacaacaagagaagatccaacacctgg consensus: **** ** * ***** *** ** * * * * ** *** * ** * ** * **** * * * * Sbay_spli: DDDDDD 1680~1800: Scer.....: ctaatgtccttattccaaagtatctcatttata----------caat-aaacaa-------aa-ctgatcttac--cgcctatcctcctctccgcactaatcaattg-ttatag-ttttt Spar.....: ctagcgtccttgatagatcg-atctcatttata----------caac-aaacaa-------aagatgatcataccgcgcctaccctctcttccacactgatcaatcgcttatcg-ttttt Smik.....: tatgcctccctgataaaaaagatctcgtctaaaagaaagatctcaaagatacaatatactaaagattttcttat--tgcattgcctcctctccacattaatccatcgctttatagtctat Sbay.....: caagcgccctcgatgtagag-gtcttccttcca----------aaacgaaacag-----ccaggatgttcttaac-cgcgtaccctccgccctg-atcgaccgaccgcctattgtttttt consensus: ** * * *** * * ** * *** * * ** ** ** * **** * * * * * * * * * * 1800~1920: Scer.....: ctcgaagcgaggatcaaat--ggccgagcaacag-gaaaagg-agtaccggcggtcacatggtctgcgagatttttcccgctgcggaaaaacctggcaacagctcaccttgaaaggcctt Spar.....: ctcaaaacgaggatcaaatagggccgagcggcaa-gaaaagg-agtattggcggtcacatgatctgcgagattttt-ccgctgcggaaaaacctgacaacagctcaccttgagaggcctt Smik.....: cttgaggcgagcatctaagagagccgagcggcaa-gaaaagg-agtattggcagtcacatggtctgcgagattttt-ccgctgcggaaaaacttggcaacagctcaccttgaaag----- Sbay.....: ctcaaggacggaatccaac--tgccccgcagcaacgaaaaggcagcattagcagtcacatgctctgcgagattttc-ccgccggccgcggccgcgggaaaaaatggtgatgactg--ctc consensus: ** * * *** ** *** ** ** ******* ** * ** ******** ************* **** * * * ** * * *** * 1920~2040: Scer.....: ggcctgtatttttcttttttcttcatccttctttctttttc-tttattcttatttttcatcttaataaataatccagagaa-taaatctatcctgaaaaaaaa--taaagtaaagaagcc Spar.....: cgcctgtatttttcttttttcttcatccttctttctttttcttttattcctattttccatcttaataaataattcagagaa-taaatctaacctgaaaaaaaaactaaagtaaagaagcc Smik.....: -acatctatttttc-tttttcttcgtccttctttctttttc---tattttcatctc-------aatgaataatccagagaattaaatcaatcctgaaaaa----caaaagtaaagaaact Sbay.....: tgctcatatggaggaggcctagtttttcttttttcttcttccttctttgttcttct----------------ttcacagaactggatctattttgaaaaaaaa-taattagaaagaggcc consensus: * *** * * * *** ****** *** ** * * ** **** * *** * ******* * ***** * 2040~2160: Scer.....: aggaaaatcactatcgccacaagtaaataa--atttcact-gactatagagtacatacataaacaagcatccaaaaaaacATGTCTTCTTCTAAACGTATTGCTAAAGAACTAAGTGATC Spar.....: agg-aaacaacttacgccacaagtgaacaa--atttgatt-ggctatagaatacacacataaataaggaacc-aaaaatcatgtcttcttctaaacgtattgctaaagaattaagtgatc Smik.....: aagaaaacaacttgaataaaaagtaaatagc-atatcact-gacaatagaatatacacat-aacaaacatcc--aaNaNcaNNtNNtNNtcNaNaNgtNtNgcNNNNgNattNaNNNaNN Sbay.....: ttgaagagaacctacatcaaaagtaaaatacgctttcattaagctatagaatatacaca-aaacaaccagttaaaataccatgtcttcttccaaacgtattgctaaggaactaagtgacc consensus: * * * ** * **** ** * * * * * ***** ** * *** ** ** * ** * ************ ************** *** ******* * 2160~2280: total....: ======= Scer.....: TAGAAAGGTATGTCTAAAGTTATGGCCACGTTTCAAATGCGTGC------------TTTTTTTTT-----AAAACTT----ATGCTCTT--ATTTACTAACAAAATCAACATGCTATTGA Spar.....: tagaaaggtatgtctaaggttattgccacgtttcaaatgcgtgcttttttctctttttttttttt-----taaactt----acgttctt--attaactaacgaaattaaaatgctattga Smik.....: NaNaaNNgNNNNtNNNNNNNtNtNNNcNNNtNNNNNaNNcNtNNNNNNN--NNNNNtNNtNNNtN-----NNNNNNN----NNgNtNNt--NtNNNNtNaNNNNN--NNNNtNNNatNNN Sbay.....: ttgaaaggtatgtctagtgttattgccacgtttcaaatgcgtgctcttttcttttttttttttttttttgtatactcttaaaagttcttccatatactaacaaca--agcgtgttattga consensus: * ************** ***** ******************** ********* * *** * * **** ** ****** * * * ** ****** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBBBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >================================================================================================================ 2280~2400: Scer.....: ACTAGAGATCCACCTACTTCATGTTCAGCCGGTCCAGTCGGCGATGATCTA----TATCACTGGCAA-GCATCCATCATGGGACCTGCCGATTCCCCATATGCCGGCGGTGTTTTCTTCT Spar.....: atcagagatccacctacttcatgttcagccggtccagtcggcgatgatcta----tatcactggcaa-gcatccatcATGGGACCTGCCGATTCCCCATATGCCGGCGGTGTTTTCTTCT Smik.....: NNNNNNNatNNNNNNNNtNNNNNNtNNNNtNNNNNNNNtgNNNatNNNNtNNNNNNatNaNtNNNNNNNNNtNNNNcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sbay.....: aatagagacccacctacttcatgctcagccggtccagtcggcgatgatcta----tatcactggcaa-gcgtccatcATGGGCCCCGCCGATTCTCCATATGCCGGTGGTGTTTTCTTTT consensus: * ***** ************** ***** ******** ******************************* *********** ** ******** *********** *********** * known....: ===>= 2400~2520: Scer.....: TGTCTATCCATTTCCCAACCGACTACCCATTCAAGCCACCAAAGATCTCCTTCACAACCAAGATATATCATCCAAAT-ATCAATGCCAATGGTAACATCTGTCTGG-ACATCCTA---AA Spar.....: TGTCTATCCATTTCCCAACCGACTACCCATTCAAGCCACCAAAGATCTCCTTCACAACTAAGATATATCATCCAAAT-ATTAATGCCAACGGTAATATCTGTCTTG-ACATCCTG---AA Sbay.....: TGTCCATCCATTTCCCAACTGATTACCCATTCAAGCCACCAAAGATCTCCTTCACAACCAAGATATATCACCCAAAT-ATCAACGCCAACGGTAACATTTGTCTGG-ACATCCTA---AA consensus: **** ************** ** *********************************** *********** ********* ** ***** ***** ** ***** ********* ***** 2520~2640: Scer.....: GGATCAATGGTCTCCAGCTCTAACTCTATCGAAGGTCCTAT-TATC-CATCTGTTCTTTGTTAACAGACGCTAATCCTGACGATCCTTTAGTACCAGAAATCGCTCATATCTACAAGACT Spar.....: GGATCAGTGGTCTCCCGCTCTAACTCTATCGAAGGTCCTAT-TATC-CATCTGCTCTTTGTTAACAGACGCCAACCCTGATGATCCTTTAGTGCCAGAAATCGCTCATATTTACAAGACT Sbay.....: GGACCAATGGTCCCCCGCTCTAACTTTATCAAAAGTCCTAT-TATC-CATCTGCTCTTTGTTGACGGATGCTAACCCAGACGATCCTTTAGTGCCAGAAATCGCTCACATTTACAAGACT consensus: *** ** ***** ** ********* **** ** ******************* ******** ** ** ** ** ** ** *********** ************** ** ********* Sbay_spli: BBBBBBB 2640~2760: Scer.....: -GACAGACCCAAGTACGAAGCTACAGCCAGAGAATGGACAAAGAAATACGCTGTATAAacagaagtccttactca-----gctga-aaaagagaagcaa-------------gatttata Spar.....: -GACAGACCCAAGTACGAAGCTACAGCCAGAGAATGGACCAAAAAGTATGCTGTATAAacggcagtcctcactta-----accgg-aaaagagaaacaa-------------aatacata Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtNNNtNaNNNNNNNtNNNNNaNNNNNNaNNNNNNNNNNNNNNNNNNNNNaNa Sbay.....: -GATAGATCCAAGTACGAGGCTACAGCCAGGGAATGGACCAAGAAATACGCTGTATAAacatacacccttgctat-----gctggaaaaagagaaacga-------------aa-aaata consensus: *** *** ********** *********** ******** ** ** ** *********** *** ** ***** * * ********* * ************** * *** Spar_spli: DDDDDD 2760~2880: Scer.....: tgggattggacgatgaaaagaatatta-gatacaatgta-tttaagaaagaatac-aataaaatatatgt-atattctatctctaataacatagatttactgatataagatataagacta Spar.....: tgagattggacgataaagagaatatta-gatacaatgta-tttaagaaagaatac-aatgaaatatatgt-atattctatctttaataacatagatttactgatataagatataagacta Smik.....: NNNNNtNNNNNNaNaNaNNNNNNNNNaNNatNNNaNNNaNttNNNNNNaNNaNNNNaNNNNNaNNtNNNNNNNNNNNNNNcNNtNNNaNNNtNNNNNNaNNNaNNNatNNNNNNNNaNtN Sbay.....: ggagatcggacgatgaa-agaatatta-gatataatgtattttacaaaagaataa-aataaagtatatat-atattttgtctttaataacatagatttactgatatattttataaaggtt consensus: * *** ******* ** ************** ****** **** ******** **** ** ***** ******* * *** ************************ ***** * 2880~3000: Scer.....: ttgttggcaacagtacaggggaacctt---tttttttttttccaaacaactcgaatc-gtaaacctt-aatttaatttattcaggggagattcatgaacatttt--tttcctcgaacagt Spar.....: ttgttattaaccatacaggagaacc------ttttttttttccaagcaattcgaatc-gtaaacctt-aatttactttattcaggggagatccgtaaacatttttatttcctcgagcagt Smik.....: NNNtNNNNNNNNaNatNNNNNNNNN------NtNNttNNNNNNaaaNNggtt-aatctg-aaactgt-agtttgctaagttca-gagatatttgggtgcatcc---ttttctcgaaca-- Sbay.....: ttgttattaaccatactctttttccccagatgtgcatttttttcaacagatcgagtcggcaaaccttaaaatcgttttatccaggggagattgg-acacaattt-atgctcgaagaaggc consensus: ***** *** ** ** * ***** * ** * * ** * **** * * * * * ** * ** ** ** * * Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 3000~3120: Scer.....: atggagaatttttgcttagttaca-tgcacgcaagcgcgggtatatc---ccgcatatatttcagttgtg-gttcatatttgacctaacttgtcgagggagcgtcaacgttaaccgtacc Spar.....: atgggggatttttgcttatgtaca-cgcacacgagcgc-ggtatatc---ccgcatatatttgagtcata-atcaatgcctggcctaccttctcgtcagaccaacaatgttaa-catatt Smik.....: acagaagatttatatttgcatacaat-cacaaaggcgc-aatatacc-cattttccatatttgagacat--aataacaactgatctacctctttgc------------------------ Sbay.....: acacaagattttcgtttactttgattgtattttcatcttgccctaccaggacgctaacgagcctgttggacaccaactgctatttaagccttccgtagctggtttggaatcggtaaaagc consensus: * **** ** * * * ** * * * * * * * * 3120~3240: Scer.....: tttttcatttctagtctatctgtaggttaattactattgtcattaacatcatttctggggtgaagcctat-ttaaatttttgaagttcaacgcatagctagtatatgtaatcaacgatca Spar.....: tctttgatttctaatgtgcgtgtaggataattgttgtcatcaagaagtgaaatttcaagataaagtctat-ctgacttttcagaattcgacgcctggatggtataaggcatcagggatcg Smik.....: -------tcgcccgtataagttcaggataaacatcgtca-gaataaccaaatttccagaatttaacgcatattcacaattgatagtactgcgagcttgtttcccttaacacga---ttca Sbay.....: ttcctt-ttcttattcggagaattgaacaggaatccagctttgtgaatctggct---gaacaatccatgt-tcggc---ccatgctcatattcttctgtgtcagaaaaaacgtgctctaa consensus: * * * * * * * * * * * 3240~3360: Scer.....: atgactggttctctgtttggcaaaaattctgag-gagcattacactgtactaaggaggcagaagaataactgcaggagtagccaaaaaaatctccgcgacggggaattgaaccccgatct Spar.....: ctggcaagt--tttgcttggtaacaacaatgcgcgagcatcacattgaaccaaggtggtgg----ctcgcaaca-gtgtcaaaaaaaaaatctccgcgacggggaattgaaccccgatct Smik.....: gtacattatacattttt--------atcatgtgcgaaaattattataggt------------------ataaaacagtgagcaaaaaaaaactccgcgacggggaattgaaccccgatct Sbay.....: ctgccttatcaattgttccgtagtaaacaatttctgaaattttagtgttttgtctccg------atcatcttcataaccttaaaatggcatctattttgtctgatctagtttgaccatct consensus: * * * * * ** * * ** * ** * * * * **** 3360~3480: Scer.....: -ggcacgcgacaagcgcccattctgaccattaaactat-cacggaag----aaacaaagcactcacgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattac Spar.....: -ggcacgcgacaagcgcccattctgaccattaaactat-cacggaag-----aacaaagcactcacgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattac Smik.....: -ggcacgcgacaagcgcccattctgaccattaaactat-cacggatttggaaaacaaagcactcacgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattac Sbay.....: aggtatgtggtctgtgctcattgatgtcttggaagtgtgtaagtgtc----tgaaatgacaatttttctgtcatgcccctggataatgttatggtgtgcccatatgcgtgtctgaatcgc consensus: ** * * * * ** **** * * ** * * * * * * ** * ** * ***** ** ** * * * ** ** ** * Sbay_spli: DDDDDD DDDDDD 3480~3600: Scer.....: gccacgcgagctactatttgttgaaggttttatgaaataacgaaaac-atgtttcctctaaagatggatgtgcttccagtattattcttgtatgacaattcat--ttgtttttggtgtcg Spar.....: gccacgcgagctactatttgttgatattgttgt---attacgggctc-gagtaataccggatgtcttg-acaatcctaaagtcgtt-taggagagtaacttgttgtcagacttattattt Smik.....: gccacgcgagctactatttgttgtgatagttg---------gcaactatagtagtatagacagtaaaatagaatattaatatca----atgagggcagtatggtcatattttttcttcct Sbay.....: tcctccgcggcaacc-tttattgtacgaccggacagattaagcatgctctatggaccctgtgttctggcacgaagtagatgccgtacgttcgtcatagagccc--ctattctttgcagtc consensus: ** * ** ** *** *** * * * ** Scer_spli: DDDDDD Sbay_spli: DDDDDDDDDD 3600~3720: Scer.....: gcttgtattaaagacttata-tctgtaatat---atc-tgtataa-ataccaatgcaaggatatatt--aaatgaaagttagcatatttcaattggctttttaga-ataaagacg----- Spar.....: tcgtgattcacagaatgtta-cttatcctatataatc-tatataagatctgaatctaactaaagggtggaagcgcggaatctcggatctaaactaattgttcaggtatttatacgtttgg Smik.....: tgttgaaataagtgatta---ctgttgataattagtagtttagtaagttgtaataattaagaatagt--cgttccttcttaatctatataagagaggtatataaa-acacacgct----- Sbay.....: tttctggccaaaccctgtagccccgaaacattaaatcgtttacccatagcgaactccccaggatagt----gcgggctatatattattttactggcataccttgctatccgcacccacac consensus: * * * * * ** ** * * * ** * * * * * Smik_spli: DDDDDD 3720~3840: Scer.....: -aaattt------ttttaa--aggtaaaataccccactga---aaccttatgctcttttattgtacatataggaaaattggtcaa-----atgctggccagctt--taa--ctgaaataa Spar.....: ttagtttggttcatcttaggcaagtaggttgcctagtatactcaatcttgt-ctattgtttcgtacgtgtttcatacatgttttatgtctaggttggtaaatctagtaatgctgaggtat Smik.....: -gattgg---ttatattaaaccaaaaggttcagacataaatctgagat........................................................................ Sbay.....: ggaccgtcaattgcatgataatagtcattgtcatcaggtccgaaaccatat-ctattatattttaaaccgatttttatctgtaga-----gttttgttagcgtctgtacagttaaagtag consensus: * * * * * * ** ** * * ** * * ** ** * * ** Spar_spli: DDDDDD 3840~3960: Scer.....: atc-tctacaggaa-----------tgcttgttgggactaactccagt---gaataattattag-----ggctgcgattatattcttgatggtacgggtaactt-tctaatatttcagat Spar.....: ctcatcttgagatacaacatcttcctctctctcggagttgtcttgagtttcgtaaagttgtctaaaattggctaatattgactttcgtatttcctctgggattt-ggtagaattcagctt Sbay.....: tcgccaattatgtcttcaaa---actcacagtcagattagccatggacg--agatagttataaagtctatgatgacgtcgcggcgttcgagcgttgggaagttcaagtaataatttccct consensus: * * * * * * * ** * * * * * * ** * * * Scer_spli: BBBBBBB 3960~4080: Scer.....: ccaagtaatgaaaagtgaatgtacact-cgtaagtcttcaattatgttagatgtacaaaggaaaaaagatcattg--gagaagttggcaaaatacatcttttatttatttagcaagtcaa Spar.....: ctgaatattctactgagattgtcgggt-ccacatcctgcatacgacataagtatgttttgtgtgtggtatctatc--cctataactgcaatgacttcattggctctgttgattctttcaa Sbay.....: cctgcttctttgaacccatgacatagtgatacaaagctggaaggacagagtttggaccaaggtacgattttcatcatgttatattagagaggtatataagacactcgctgattggttgcg consensus: * * * * * * * * * * * * * * * * Scer_spli: DDDDDD Spar_spli: DDDDDD 4080~4200: Scer.....: acaataagatctttccttttttcagattgaacttcggatcagtgaaaattgttggttact-ctttaaactgtaacactacaaag--aaattaagtctgaata------------------ Spar.....: cggaactgattggtttattctttgga-tatgcgtcgggtcggtatacaaatttctttagg-tattgtacgttaataactctatgttttctcttgtgtgaatccaggtcgagttcg--taa Sbay.....: tgaaac--------ccaatgctaaaagtgtagttcgggactgaattataaggtatccagtataatccatatcaattgatggatcttcaactttatctcaataattgtcagattcggttac consensus: * * * * * **** * * * * * * ** * * * *** Spar_spli: DDDDDD DDDDDDDD 4200~4320: Spar.....: gcgttatcatttattttcttgacaactcgaaatggtccaacgtatataggttgtaccttcatatacgttcctttcttgaagtatgcatctctatgcactagtacg-tgatctcctatgtt Sbay.....: tcgtatacgattacaataactgtatatccgaa--atcaattattccaacgcaaaccgtttcgactctatacaacctacaaacctactactcagtccacacacataccaatatctcaaatc Spar_spli: DDDDDD DDDDDDD 4320~4440: Spar.....: cagtaacaaagttttacgtctttggttgttattagtttccatttcaatctgagcagactctagtcgttcttttgtttggatcgtaatagctttgaggtgtcgggccagttctacggcggt Sbay.....: atggagggccacccttcatattaaatttgaccctcttgctgaaataattttgaggttttagatctcaactattcggtatatatatatatatataccatat-aagctactagaaaatcatc 4440~4560: Spar.....: aaaacttcttgcattgatttcgcaatccgttttaatggtaggtgcattgggagtatatcctaaatcaat-ttcgaatggtgactttccaagtgttctggtcggtgtggagttatagacaa Sbay.....: agagagtattacaactacgtt--agtctaaaaaaaatctccgcgacggggaattgaaccccgatctggcacgcgacaagcgcccattctgaccattaaactatcacggataaggaaaata 4560~4680: Spar.....: attcaatttgtggtaagtaggtgtgccagttccgggtattggtggaggcataagctcttatcaatcggttcaatgtttgaatcgttctttcggattgtccatctgtttgggggtggtttg Sbay.....: aagctcacgatgggggtcgaacccataatcttctg--attagaagtcagacgcgttgccattacgccacgcaagctgttatttgttgagaaagactaacaaaacgt---aaactaacaag Spar_spli: DDDDDD Sbay_spli: BBBBBBB BBBBBBB 4680~4800: Spar.....: cagaagacattgtcgattttatccctaatctttttgtaagttcttgatatttttctgcggttatacggatgtctctatcactggttattgttttcgggaaaccatgatatgaaaagatat Sbay.....: gaaggaatactatacttccta-aaatagtatggtcaattattctcaa-ataatagagaactagtatctaagacttcattcaaatgtaccacatttatatagcaataacttttttcgaaag Spar_spli: DDDDDD 4800~4920: Spar.....: agcggaatagcgtatttattagctgtgatgcg-tctgctgtttttcttgtagctatgaagtgagcgcgtttcgagaagcggtcaacaacaacgaggatcatattcaaatcgtttgttgtt Sbay.....: tgcccaatcactgccaggacgttcggaacgagatgttacgcagaaacactattccggaagttaacgatttgcaaaattcttctcattgatgctaaaatt-tgggcaagtggtcaagtact 4920~5040: Spar.....: acgggtagtccagtcacgaaatccattgatatattaagccatcttccttctgctacgggaagcggttgcaatagtccttgtgaacgtggtcgatgtgattttgtgatttgacattgtacg Sbay.....: a---gcaactctgtgttgcttccaatag---cattagtggaactaactcttcgatcaagttactgtgaagttgccaatgacagatcgataaagccgggtaatacgctgaaattttagatc Sbay_spli: BBBBBBB 5040~5160: Spar.....: caggtacggatgtattgtgtaatcgaatgttgcaatttcggccagtaataaattggagcaatctttccaaatgttacagttacaccaaaatggcctccgaataaagtatgatcgtgatac Sbay.....: caaatattga-aaactaagtataaggttgtgggattttgacttatcagtgaat--atgcaaagaaaacaaaagagattg-aacgtccacaagatatcccgcttagtta--attaacaaac Spar_spli: DDDDDD Sbay_spli: BBBBBBBBB 5160~5280: Spar.....: agttttatgacttcgttctgttgttttaccgggactactaatcggtctcgatagtagattattccattttctagggagtagttctttcggaaggtctctgataactgaaatttcttgtga Sbay.....: aatagggacatttccttttttt-tttactcggatttaagaacagttgttggttggtcttcaagctgtaacattataaaaagttaaatcggaaag-------------------------- Spar_spli: BBBBBBB 5280~5400: Spar.....: tagctacggaatgcggacatatcctcaggcatgacattgtgttgtgtcaattcttccatgtaaatcaaggtggcactgcataatgggtctgatttgtaatgagttttccaattttctggg 5400~5520: Spar.....: tcgataggttggggtatttctgggattatagtgtacacggcacgggatatagcatctgcgacgacgtttttgggtccagctaagtattctagggtgaagttataagtggctaggtcatcc 5520~5640: Spar.....: aaccatctttgaactcttcgtgcaggttcattcttattctgcagtgacagtaagctaatgtgatccgttctcaatgtaaaatgttttccatggagcatataacggaagtggtgaagtgcc 5640~5760: Spar.....: ttaataattccaagtagttcaccggcggggtagttcttttgagcactttctaaggatttagagaaataaccgacgacaccgacaagtgcgtttttggcattgacttcttctagaacggca 5760~5880: Spar.....: ccgatgccatcttttgatgcgtctgtagttaatcggtaaattgctttgttgttaaatggcactagaacaggggaattacatagggcggattttaatttctcgattgccttgtcctgctct 5880~6000: Spar.....: tctgtccattgactcttgtcgcatataaagagctggattggttgtgcaatcttagagcaatttggaatgaatcgtctatagtaattaatcattcctaaaaatcgttgtgcttgctttact 6000~6120: Spar.....: gttctgggtttcggaaaatctcgaatggcagcacatttgtgttgtaatggggttattttctgaattccaatattataacctagaaattcaatttgttctgatgcaaacttgcattttttc 6120~6240: Spar.....: tttttgacaataaggttttccttcttaagtcttccaagaactgtgtctaaatgtttccagtgttcttctggggattcagagaagattagtatatcatcaaggtagacattgacaaatctc 6240~6360: Spar.....: aagtctctgaaaatgtcggccatgtatcttgcaaaggtgctaggtgcattgactagaccaaatggcatgacagtgtattcatatttaccggacggggtgacaaaagcggttttgtagcgg 6360~6480: Spar.....: tcttttggttccattggaatctggtgataaccactgtgcaaatctagcgtggtgaatatttgggcattcccaatacggcttaataggttgtcgattctgggtaatgggaatgggtcggag 6480~6600: Spar.....: atggtaaccttgttcagggcacggtagtcaacgcaaagtctaaacgtaccatctttcttcgggacaaggactacaggggaactgcacggagatttagaggggacaatgaacttgttgtcg 6600~6720: Spar.....: agcagttcttgaacgatcttgttaatttcttgttcgttcctttctgtaacatgatatggctgtagtcgaggtagtcttgtgtcaagtttaatttcaatgtcgtgttttacgggcatgttg Spar_spli: DDDDDD DDDDDD 6720~6840: Spar.....: tggatattggccggtcttggcgggagatcattacgtataatctctatatacttctgttgtaaccaaacaggcaacgttgaaaatgtgtccttgttgctgtgatcagtagctttaggttct 6840~6960: Spar.....: acgttctgtatggttgaaacaacgttggagtattttccatcctcttctaggatgatcgcttcttcaggtatcgggaattgcgcaaatgtactttgagtactacctggattgtcgagggtc 6960~7080: Spar.....: gtaagcgggtcagttgcttctggattggtagttgcaaaagacatagtatttgttctggagttactacgattaccagcggatttctggtcagttgcttcaggaatagtgggggcaaaggac Spar_spli: DDDDDD DDDDDD 7080~7200: Spar.....: agtgttttgtttctggagttaccacgattaccagcggattttgctttcacatagttaatgttttcgggatggtaagccttgggcttctgggcggaggtacactgcttagtgttcaggatt 7200~7320: Spar.....: gtgtacaggagttttgggtagcggcgtagaattggatttccgattagaagttggtagtccattttatcgagtacatacgcggctacattgatttgcagattgtcgactgtaaggtcgagc 7320~7440: Spar.....: gtaactgcttctgaagtggtggcggattcggtggatatgaatcctctaaagcggagcggtggagtatcatgggttggcagattcaggagatttacggtatctcttcggataaatgatgtg 7440~7560: Spar.....: ggcgatccactatcaaacagggtttttattttcgtgttttttatttttatgtgtttttcggcagttttgtccatttcaggtatggcgatataatgtacaataggtcgggatgtgatagaa 7560~7680: Spar.....: ggtttcgtgtggtctttcgacttaagttcaggatcggctagaactcgcattacgagctctacactcgttcagacggtgtccttctttcttacaataaaaacagagacggttctttacaca 7680~7800: Spar.....: ctcttctctagatggattattgcttctcctgttgtgataagtcgcggtcggtttattgtatgatcttcttgtccgaactgcgtggacgtgtctcttctggaccaaaaagttttcttgtgg Spar_spli: DDDDDD 7800~7920: Spar.....: gtcactgtcgtagtcgtactgttcgtgtaaacgagttgcggctgcgattatagtatctccatcggcgtctagctcaaattctgggaagaatctctgagttagtgctgttgtttggtaagc Spar_spli: DDDDDD 7920~8040: Spar.....: ctcctccatggctcctctcaacgtttttggtttatgcaatctaactatattgtaggtttcctttgtcagtaagcgggtatatgtcataatagcggctttttcggtcataaagtctggtgg Spar_spli: DDDDDD 8040~8160: Spar.....: cattctgtcccaaatcattttgaattgtttgttgagacgttcaatacccagttttgcttcagatagttgattgatcgtattgaagattttgttgatgtctggtggcttatagaaatgctg 8160~8280: Spar.....: atagagtccttgtatgaaggtgtcgaatgttatttccagtatgccttgctcttggacaaaatcattagcccattgagcagcagggttcagtaagtgttttctacaatagacaatacgact Spar_spli: DDDDDD DDDDDD DDDDDD 8280~8400: Spar.....: ggcttcgttgggccaaggaatcatagacatgtttaacattatttcagagatgaagtttttcaacttgtgcgagtcatttctacctctgaaggttagtgctggttggatcgggaaattggg 8400~8520: Spar.....: aagacattccaccggaagctttgggtaacttcctcctcctgggatttgatccataaagctcatgacagatgttggtgtagctaggttcggggattcgttggtttgcttgaacaattagta 8520~8640: Spar.....: acctttaacgctaccagatgttgtattacgggctcgagtaataccggatgtcttgacaatcctaaagtcgtttaggagagtaacttgttgtcagacttattattttcgtgattcacagaa 8640~8760: Spar.....: tgttacttatcctatataatctatataagatctgaatctaactaaagggtggaagcgcggaatctcggatctaaactaattgttcaggtatttatacgtttggttagtttggttcatctt 8760~8880: Spar.....: aggcaagtaggttgcctagtatactcaatcttgtctattgtttcgtacgtgtttcatacatgttttatgtctaggttggtaaatctagtaatgctgaggtatctcatcttgagatacaac Spar_spli: DDDDDD 8880~9000: Spar.....: agatatataagtgatataacaaaactatgttccatctaagaagtatatcccacaattctatttcgatcataagataacacctttgtctaaagcgatggtcttataacaaaatttattata 9000~9120: Spar.....: actgcaatacatccatatgtaaacttatcctacaaaaaatatgaaatcgtagctagcattttccaaccaactttaatgaaataagtttaaatttttttgcaggtaaactacccccactta 9120~9240: Spar.....: aatcctgtgtcttgttgcagtacatttatagaaattggtcaaatactagcccactttaactgaatataatgactatgtaaacgttattgaagctgactccggtgaatgattaatgggaca 9240~9360: Spar.....: gcgatgatattcctgataatacgggtaacttactgaaatttcagatccaagtaataaaaagtgaatgtatgcttgtaagactttaacttatcattggatgtgccaaggaaaaaacattga Spar_spli: DDDDDD 9360~9480: Spar.....: ataagtccgcaagatacatcttttatttaattggcaagtcaaaacaataagatccttccctttttgtagttgaaacttggagtagtgaaaattgtgggttactcttcaaactgtaacgtt 9480~9502: Spar.....: acaaataaattaagtctgaaca { alias......: ['RPL19A'] chromosome.: 2 description: Ribosomal protein L19A (L23A) (rpl5L) (YL14) end........: 415219 exons......: [(1, 2), (509, 1076)] gene.......: RPL19A introns....: [(3, 508)] length.....: 1076 name.......: YBR084C-A plength....: 358 start......: 414144 tdist......: 397921 type.......: ORF up.........: 0 } Scer: 5 donors and 1 branches Spar: 5 donors and 1 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 729), ('Spar', 729)] ->[('Scer', 1879), ('Scer', 1883)] ->[('Spar', 812), ('Spar', 816)] ->[('Scer', 266)] ->[('Scer', 389)] ->[('Spar', 96)] ->[('Spar', 1019)] ] [ ->[('Scer', 1220), ('Spar', 1220)] ] 0~120: Scer.....: tgtttctcaaggcacagtatatcacttcaggtaaaccgtcttcaattgagttaattatactcacaccacttctttagtctttctatctgaaatcattcaagcgcactttagattcacttc Spar.....: tgttgttcagggcccaatatattactgtaagctaaccggtttcaattgagttagttatactcacactactttcta---cttcgtatctgaaatcatgtaagtgcattttagatgcacctt consensus: **** *** *** ** ***** *** * * ***** ************* ************ **** * *** ************* *** *** ******* *** * Spar_spli: DDDDDD 120~240: Scer.....: aacgcctaatgaaaaggacaatggaaaacccttctcgagaaatcttatatgtaatttgaaggcaaccaaacaatgaaaaagaaaaaaaaaaaaaaaaaggaaaaactttatttcaaaatt Spar.....: aacgcctggtg-aaagaacaatggaaaacccatctcgagaaatcttacattttatttaaaggcaaccggacaatgaaaaagaaaa-------aaaaaaggaaaaactttatttcaaaatt consensus: ******* ** **** ************** *************** ** * **** ********* **************** **************************** 240~360: Scer.....: cgtcaacccactaaggtttattacaagttcgtctcatttccttttttacacccatgcattttgtcatccagacattacgcattttccgtgaag--attttttttcttcgtttcgtttaat Spar.....: agtcaactttatgagggtaatactgagtctctaacatttccgtctgcacacccatgcattttttcatccagacatt-cacattttttgtgtagctattttttttttctgtttcgtctgat consensus: ****** * *** * ** *** * ******* * * *************** ************* * ****** *** ** ********* * ******* * ** Scer_spli: DDDDDD 360~480: Scer.....: atccgttctcggtgaggaggccattggaagcatgtcttccgcttagcaccagactgagagagagtgcgatgcttagcataattttggttgcctcttcgaattgctcctgacagtgtacta Spar.....: acccgttctcggtacaaggaaaatt-gagttatgtcttctgcttggaacgtaggcccgagagagcttggtgctcagtgtaattctggtttcctcttcgaattgccccttgcggtgaaccg consensus: * *********** * *** ** ******** **** * ** ******* * **** ** ***** ***** ************** *** * *** ** Scer_spli: DDDDDD 480~600: Scer.....: tacgctggccggggccgtggcaatccctgggtagcagctggcatggactcctttcacgaatcctgccagactagggcggtctcagttggaagccgtcttccttgcaaactacgataggca Spar.....: tacgctgactggggccatgacattccttcagtagtaattcctacaggctcctttcactgttgcctccaggctagggtggtctcagtttg-agccaccttctctgcaaactgcgataggca consensus: ******* * ****** ** ** *** * **** * * * * ********** * * **** ****** ********** * **** **** ******** ********* 600~720: Scer.....: tcgacctaacttctctgagggggaaacaaaaa----tataggtttggacagtgatcaacagagaatacaaggtaactattgattttacgcttcacatagaaagttgattaagaactccaa Spar.....: tcgacccaacttctctggtggggagtcaaaaaaaggaataggtttggacggtgatcaacataaaatgcaaag----gattactttcacatttcacatagaaagctgattaagaactccaa consensus: ****** ********** ***** ****** ************ ********** * *** *** * *** *** ** ************* **************** 720~840: Scer.....: agcaaaaATGTATGTGATGCAGTGAATAATGAATCTATGAAAGTTTATCAGGAATAAGATAGAATTGTTATAATAACTCCCTCTTGAGGAATGCGAGTTTGATGAGTTATCACCTGAAAC Spar.....: agcaaaaatgtatgtgatgcagtgaataatgaattaatgaaagtatatcaggaataagatagaattgttataataactctttctcgagacaagtcagttcgttgagttaccacctgaaac consensus: ********************************** ******** ********************************** *** *** * * **** * ******* ********** Scer_spli: DDDDDD Spar_spli: DDDDDD DDDDDDDDDD known....: >============================================================================================================== 840~960: Scer.....: ACCAGCGTTATTGAAAAGTGATATGGGTAATATATGCCAAGAACGATACTGTGTTCCATTTGCATCATGAATATGCTAGTGAAGCCAGATGTTTCTATAATCGGAGTTTTAGCACTAAAA Spar.....: gttagcgttattgagaagtgatatgggtactatatgccatggatgatgctgtg-tccatttttattactaaaatgccagttaaaccagatctttgtataatcggagttttttgattaaaa consensus: *********** ************** ********* * * *** ***** ******* ** * ** **** *** ** ****** *** *************** * ***** known....: ======================================================================================================================== 960~1080: Scer.....: GGCAAAAGAGGAAACTTGTGGAAGAATTTTTTTTCTGTGCAGTTTACCATTAAGA-TATTTAT-AGCGATAAGTGAGACCATTAATATGAGTAT-TCAATACGAGAACCAGTTACGTGAT Spar.....: ggaaaaaaaggaagcttctggaaga---ctttttctctgcagtctataaagaagattgtgtatgaaaggtaaatgaagccccgaaaatatatctattaatgttgggaccagtcatgtggt consensus: ** **** ***** *** ******* ******* ****** ** * **** * * *** * * *** *** ** ** ** * * * *** * ****** * *** * Spar_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: Scer.....: AAAAGTT--ACTCGAGCTGCTGCAGTATCCAGCATACATAATAACCATGTCATTTTTCTATAGCGAGTTTTAAAGTGTCTACCACCGCAATTTCTATCTTTCGACGCGAATAGACTTTTT Spar.....: gaaaatcggattcaagcggctgcagtattcagcgtacaaaataaccatgtcgtttttccatagcgagttttaaagtggctaccac--taatttctatctttttacttgaatagacttttt consensus: *** * * ** *** ********** **** **** ************ ****** ****************** ******* ************* ** ************* known....: ======================================================================================================================== 1200~1320: Scer.....: CCTTCTTACAGAACGATAATAACTAACATGACTTTAACAGGGCTAATTTACGTACTCAAAAGAGACTTGCCGCTTCTGTCGTCGGTGTCGGTAAGAGAAAGGTTTGGTTAGATCCAAATG Spar.....: ctttcttacagaacaataataactaacatgactttaacagggctaacttacgtactcaaaagagacttgccgcttctgtcgtcggtgtcggtaagagaaaggtttggttagatccaaacg consensus: * ************ ******************************* *********************************************************************** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB known....: ======================================>= 1320~1440: Scer.....: AAACCTCTGAAATTGCTCAAGCCAACTCCAGAAACGCCATTAGAAAATTGGTTAAGAACGGTACCATCGTAAAGAAGGCCGTTACCGTCCACTCTAAATCCAGAACCAGAGCCCATGCTC Spar.....: aaacctctgaaattgctcaagccaactccagaaacgccattagaaaattggttaagaacggtaccatcgtaaagaaggccgttaccgtccactctaaatccagaaccagagcccatgctc consensus: ************************************************************************************************************************ 1440~1560: Scer.....: AATCTAAGAGAGAAGGTCGTCACAGTGGTTACGGTAAGAGAAAGGGTACCAGAGAAGCCCGTTTACCATCCCAAGTTGTCTGGATCAGAAGATTACGTGTCTTGAGAAGATTATTGGCTA Spar.....: aatctaaaagag-aggtcgtcacagtggttATGGTAag.................................................................................. consensus: ******* **** ****************** **************************************************************************************** 1560~1680: Scer.....: AGTACCGTGATGCTGGTAAGATTGACAAGCACTTGTACCATGTTTTGTACAAGGAATCTAAGGGTAACGCTTTCAAACACAAGAGAGCCTTGGTTGAACACATCATCCAAGCTAAGGCTG consensus: ************************************************************************************************************************ 1680~1800: Scer.....: ATGCTCAACGTGAAAAGGCTTTGAACGAAGAAGCTGAAGCTAGAAGATTGAAGAACAGAGCTGCTCGTGACAGAAGAGCTCAAAGAGTTGCTGAAAAGAGAGATGCTTTATTGAAGGAAG Spar.....: ........................................................................................................gctttattgaaggaag consensus: ************************************************************************************************************************ 1800~1920: Scer.....: ACGCTTAAattttctttaattaatttatcttaatatacatactcagttaataaacaggtagcaaaaacttcgataatacgtatgtatgcacatatacctacataactaaaacccattttt Spar.....: acgcttaaatcttctttaattaatttatcttaatatacatactcagttaataaacaggtagcaaaaacttcggtaatacatatgtaatcacatatacctacataactaaaacccattttt consensus: ********** ************************************************************* ****** ****** ******************************** Scer_spli: DDDDDDDDDD 1920~2012: Scer.....: ctaatattctcatctcaattgtttatataaagggtactcgtgcagacggacatcgaggtcgaattgatgccattaggagtctgccaaactat Spar.....: ctaatattctcacctcgcatgcttagataatgggctcttgcacagacgacaatcgggaccaaatcaacgtcatcgggattttgctaaactat consensus: ************ *** ** *** **** *** ** * ****** **** * * *** * * *** *** * *** ******* { alias......: ['MUD1'] chromosome.: 2 description: U1 snRNP A protein end........: 480281 exons......: [(1, 8), (98, 986)] gene.......: MUD1 introns....: [(9, 97)] length.....: 986 name.......: YBR119W plength....: 328 start......: 479296 tdist......: 332859 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 4 donors and 2 branches Smik: 3 donors and 1 branches Sbay: 1 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 302), ('Spar', 302), ('Smik', 302), ('Sbay', 302)] ->[('Scer', 481), ('Spar', 481), ('Smik', 481)] ->[('Scer', 1172)] ->[('Smik', 1368)] ->[('Spar', 162)] ->[('Spar', 373)] ] [ ->[('Scer', 347), ('Spar', 347), ('Smik', 347), ('Sbay', 347)] ->[('Scer', 613)] ->[('Spar', 522)] ] 0~120: Scer.....: gagtaataattattgcttccatataatatttttatatacctcttatttttatgtattagttaattaagtatttttatctatctgcttatcattttcttttcatatagggggggttggtgt Spar.....: gagtaataattattgcttccatataatatttttatatacctcttatttttatgtattagttaattaagtatttttatctatgtgcttatcattt-cttttcacatagtggggtctg-tgt Smik.....: gaatagtaattattgcttccata--atatttttatatatctcttatttttatgtattagttaattaagtatttttatctatgtgcttatcattt-cttttcaaatagtggattctt-cat Sbay.....: gagtaataattattgctttaatataatatttttatatacctcttatttttatgtattagttaattaagtatttttatctacgtacttacaatcatttctttttgttacacgttgtggaac consensus: ** ** ************ *** ************* ***************************************** * **** ** * ** * * 120~240: Scer.....: tttcttgcccatcagattgat-gtcc-tccaactcggcactatttta-caaagggtttttttgtaagagaaggagaagacagatactaaaccatacgttactcgaaacaaaaaa-aaaaa Spar.....: tttcttcctcatctgacaatttgtcc-ttcatctcgttgttagttaagtaagaggcttttttataagatgaa-agagggaagattttgaagtaaactccactttactcaaaaactaagaa Smik.....: tttcttgtttggaggacaagtgatttatcgatctcaacgctattctg---tagagtttttcaggaagggaaa-tgagagaagagaggacataacacttc-ttctacacaataaaagaaag Sbay.....: ttttgttttcacgtagagagaggt-----------agtataatgtagctggaaaatttt-----aagaaaaaaagagagaagatatgagttagtcattcatt--attgaaaaaaaaaaag consensus: *** * * * *** *** * ** *** * * ** ** * * Spar_spli: DDDDDD 240~360: total....: ====== ======= Scer.....: aaatggaaaaagctgctatcaacaaaagacggcctcatcaaacctaaagaaaccATGTCAGCGTATGTATATACCTTGTAATTTACGTTTCCTTAAATC-TTCTTTCTACTAACGTTTTC Spar.....: aaaacgaaaaaggtagtaccaataaaacgcagtcac-ccaaacctaaagaagctatgtcagcgtatgtgcataccttgtaattcacgtttc-taaaatc-ttcgttctactaacattctc Smik.....: aaaaggaa-----tataatcaataaaa-acataatcggttcatctaaagaagctatgtcagcgtatgtgtttgccctcggacttttgtttctataaattactgtctttactaacatttct Sbay.....: aaac--------------tcaacgaagaggtgccacagt--atccaaagaaactatgtcagcgtatgtatatgcttgagaatatatgcccttgtcaaac-gtatctctactaacactata consensus: *** *** ** * * * ****** * ************** * * * * ** * * ******* * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >========================================================= 360~480: Scer.....: ATTATTCTATACTCTAT--GACCAATAAAAACAGACTGTACTTTCAAAATTTACCCAGTAGGCCAGCAAATAAAGAAAATTATACCAGATTACTTCTGAAACACATTAATCCCAACAACA Spar.....: tttat-ctaaactgtAT--GACCAATAAAAACAGACTGTACTTTCAAAATTTACCCAATAGGCCAGTAAATAAAGAAAATTATACCAGATTGCTTTTGAAGTACATCAATCCCAACAACA Smik.....: tctataccgaactacAT--GATAATATATAACAGACTCTACTTTCAGAATTTACCCAATAGGCCGGCGAACAAAGATAATTATATCAGATTTCTTTTGAAATGCATCAGCCCTAACAATA Sbay.....: tccgtttcatgttatttttgatcgattagtacagactatattttcaaaatttgcccaatagaccagaaaacaaagaaaattacaccagattgctcttaaaacacatcaatcccaacaata consensus: * * * ** * ******* ** ***** ***** **** *** ** * ** ***** ***** * ****** ** * ** *** * ** ***** * Spar_spli: DDDDDDDD known....: ================================>= 480~600: Scer.....: AGTATGCCATTAATCCGTCGCTACCCCTTCCCCACAATAAATTACAAATA--TCA-------TCACAACCGCTGATGTTACTAGATGATCAAATGGGCCTTCTTGAAGTTTCTATTTCAA Spar.....: AGTATGCTATAAATTCATCATTGCCCCTTCCTCGCAACAAATTGCTAACGGCTCAAACGGATTCACAACCGCTCATGTTACTAGATGATCAAATAGGCCTTCTCGAAGTTTCCATTTCAA Smik.....: AGTATGCTATAAATCCATCATTGCCGCTTCCTCACCAGAAACTACACACTTCT---------TCACAACCGTTCACATTATTAGATGATCAAATAGGCCTCGTAGAGGTTTCCGTTTCAA Sbay.....: aatatgttataaatccatcactgcctcttcccaaaaacaaattacaaactact---------gcacaaccccccacgttattagatgaccaaataggcctagtagagctctccatttcac consensus: * **** ** *** * ** * ** ***** * *** * * * * ******* * *** ******* ***** ***** * ** * ** ***** Scer_spli: DDDDDD Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD 600~720: Scer.....: GATCATCAAAGATGACTAACCAAGCATTTTTAACGTTTGTCACTCAAGAAGAAGCAGACCGGTTTCTAGAAAAATACACGACAACAGCATTAAAAGTTCAAGGTCGTAAAGTGAGAATGG Spar.....: GGTCATCAAAGATGTCGAACCAGGCATTTTTAACTTTTGCCACTCAAGATGAAGCAAATGGGTTTCTAAACAAATATACGACAACAGAATTAAAGTTCCAGGGTCGTAAAATTAGAATAG Smik.....: GGTCATCCAAGATGTCCAACCAAGCATTTTTGACATTTACAACTCAAGCTGAAGCAGAAAGGTTTTTAAACAAATACACGACAACAGCATTAAAGGTTCAAGGTCGTAAAGTCAGAATTG Sbay.....: gatcatccaagATGTCCAACCAAGGATTTCTGACTTTTGCCAGTCCCAATGATGCAAACAAGTTTCTAAACAAGTACACGACCACAGCATTGAAGATTCAGGGACGTAAAGTCAAGATAG consensus: * ***** ****** * ***** * **** * ** *** * ** ** *** * **** ** * ** ** ***** **** *** ** * ** ** ****** * * ** * Scer_spli: BBBBBBB 720~840: Scer.....: GAAAGGCTCGAACAAATTCGTTATTGGGTCTTTCAATAGAAATGCAAAAAAAAAAAGGTAATGACGAAACGTACAACCTTGATATAAAGAAGGTGCTTAAAGCAAGGAAACTTAAACGCA Spar.....: AAAAGGCTCGAACAAACTCGTTGTTGGGTCTTTCAATAGAAATGCAAAAAAAAAAAAAGAATGGAAAAGACCACTACCTTGGCTTGAAGAAGGTACTTAAAACAAGAAAACTTAAACGCA Smik.....: AAATGGCTCGAACGAACTCGATATTAGGCCTCTCAATGGAAATTCAGAAAAATAAAGAGAATAATGAAAGTCACTATCTTGATTTAAAAAAGGTACTAAAAGCAAGAAAACTCAAACGCA Sbay.....: CAGCTGCCCGTACCAATTCGTTATTGGGGCTTTCAATGGAAATGCA---AAATAAAGATAATGATAACACCCGCAATATGGCCTTGAAGAAAGTGCTAAGGACCAGAAAGCTCAAAACAA consensus: * ** ** ** ** *** * ** ** ** ***** ***** ** *** *** *** * * * * * * ** ** ** ** * * ** ** ** *** * 840~960: Scer.....: AGTTACGTAGTGATGATATATGCGCCAAAAAGTTCAGGCTTAAAAGGCAAATAAGACGCCTGAAGCATAAGCTGAGATCAAGAAAGGTAGAGGAGGCTGAGATTGATAGGATTGTAAAAG Spar.....: AGTTACGCAGTGATGATATGTACGCGAAGAAGTTCAAGCTTAAGAGGCAAGTTAGACGTCTGAAGCATAAGCTGAGATTGAAAAAAATAGAAGAGGCTGAGATCAATAAAATTGTTAAAG Smik.....: GGCTAGCCAATGACCATGTGTACTCCAAGAAGTTTAAGCTTAAAAGACAAATAAGACGCCTAAAGCATAAACTAAGATTGAGAAAGATAGAAGATCCAGAAATTAATAGGATTGTTAAAG Sbay.....: AATTACGCAACGATGACACTTATGCAAAGAAATGCAAGCTGAAAAGGCAAATTAGACGCCTAAGACATAGGTTGAGATTGAAAGCTATAGATGATAGTGAATTCAATAGGATCGTCAAAG consensus: ** * ** * * * ** ** * * *** ** ** *** * ***** ** * **** * **** * * **** ** ** * *** ** ** **** 960~1080: Scer.....: AATTTGAAACCCGTAGATTGGAAAACATGAAGTCTCAGCAAGAAAATCTAAAACAATCGCAGAAACCTCTTAAGCGGGCTAAAGTGTCCAATACAATGGAAAATCCACCGAACAAAGTCC Spar.....: AATTCAAAACTCATAGATTGGAAAATATACAGTCTCAACAAGAGAAGCCAAAACAATCACAGGAACCTCTTAAGCGGGCCAAAGTTTCAGATACAATGGAAAACCCACCGAACAAAGTTC Smik.....: AATTTGAAACACGTAGGTTGAAGAATATAATACCTCAACGAGAGACCCCAAAAAAAGCATTGGAATCTCTGGAACCACCAAAAAATTCAAGTACCATTGAAAATCCACCGAATAAAGTTC Sbay.....: AGTTCGAGTCCCATAGACTACAGGAAATGGAGTCCCAACAAGAAAAACCAAAAGAATTGCAAGACCTTTCGAAACTAGCCAAAATCTCAAATACAATAGAAAATCCACCAAACAAAGTCT consensus: * ** * * * *** * * * ** * ** * *** * * **** ** * * * * * *** ** *** ** ***** ***** ** ***** 1080~1200: Scer.....: TTCTTATACAAAATTTGCCAAGCGGCACTACCGAGCAATTATTGTCGCAAATACTTGGCAATGAGGCTTTAGTTGAAATCAGATTAGTTAGCGTTCGTAACCTAGCTTTCGTGGAATACG Spar.....: TTCTTGTGCAAAATTTACCAAGCGGCACTACAGAGCAGTTATTATCACAAATATTTGGCAATGAAGCCCTAGTTGAAATCAGATTAGTTAGCGTTCGAAACCTAGCTTTCGTCGAATACC Smik.....: TTCTAATACAAAATTTACCAAGTGGAACTACAGAACAATTATTATCACAAATACTTGGAAATGATGCGCTAATTGAAATCAGATTAGTTAGTGTTCGAAACCTAGCTTTCGTTGAATACG Sbay.....: TGCTTGTACAAAATTTACCAAGTGGCACTACAGATGCGTCATTATCACAAATACTTGGAAATGAAGCTCTGGTCGAAATACGATTAGTCAGCGTTCGAAACTTAGCTTTCATCGAGTACA consensus: * ** * ******** ***** ** ***** ** * *** ** ****** **** ***** ** * * ***** ******* ** ***** *** ******** * ** *** Scer_spli: DDDDDD 1200~1320: Scer.....: AGACCGTTGCTGATGCTACGAAAATCAAGAATCAGTTAGGCTCCACTTACAAGCTACAAAACAATGACGTTACCATAGGATTTGCTAAGTAGaatttcctttgcggaagtatacctcgag Spar.....: GAACCGTTACTGATGCTACGAAAATGAAGAATCAGTTGGGCTCTATTTATAAGCTACAAAACAGCGATGTTACCATAGGATTTGCTAAGTAGaatcctttgaggggaggtacaccttaaa Smik.....: AAACTGTTAGTGATGCTACTAAAATCAAAAGTCAATTAGGACCAGTTTACAAGCTACAAAACAACGATGTTACCATAGGATTTGCTAAGTAGaatttctgtctaaaacgtatat-tcact Sbay.....: AGACTGTTTCCGATGCTACAAAAATCAAGAATCAATTGGGTCCTGTTTACAAACTGAAAGACAATGATGTTACGATAGGATACGCTAAGTAGctttttcgagtattccacactgcacaaa consensus: ** *** ******** ***** ** * *** ** ** * *** ** ** ** *** ** ***** ******* ********* * * 1320~1413: Scer.....: taaagaaattcacagataaatttgaataacgttctccattatgaataaatatgtatttacaagcttagaaaataatgtgctct---------- Spar.....: taaagaatcccaaagatagatt-gaataatggttttcattatgaataaatatgtatttacaagcttaagaaatgatatgctct---------- Smik.....: aaagaaatcttaaaaatagaaatgaataatcgttttaattatgaataagtatgtatttacaagcttaaaaaaaaaaa-gctca---------- Sbay.....: gcacctaccccaaaaaaccaatcgaacaacaactttatttatgaataaatatgtatttacaagttgaataaataaataaataatctgttcctt consensus: * * * * * * *** ** * ********** ************** * * *** * * Smik_spli: DDDDDD { alias......: ['RPS6B', 'LPG18', 'RPS101', 'RPS102'] chromosome.: 2 description: 40S ribosomal gene product S6B (S10B) (rp9) (YS4) end........: 592732 exons......: [(1, 6), (359, 1063)] gene.......: RPS6B introns....: [(7, 358)] length.....: 1063 name.......: YBR181C plength....: 354 start......: 591670 tdist......: 220408 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 6 donors and 3 branches Smik: 6 donors and 2 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 774), ('Spar', 774), ('Smik', 774), ('Sbay', 774)] ->[('Scer', 1605), ('Spar', 1605), ('Smik', 1605), ('Sbay', 1605)] ->[('Scer', 1860), ('Smik', 1860), ('Sbay', 1860)] ->[('Sbay', 404)] ->[('Sbay', 2068)] ->[('Scer', 58)] ->[('Smik', 342)] ->[('Smik', 558)] ->[('Smik', 921)] ->[('Spar', 3089)] ->[('Spar', 4629)] ->[('Spar', 6238)] ->[('Spar', 6448)] ] [ ->[('Scer', 1125), ('Spar', 1125), ('Smik', 1124), ('Sbay', 1127)] ->[('Scer', 1964), ('Spar', 1964), ('Smik', 1964), ('Sbay', 1964)] ->[('Spar', 6372)] ] 0~120: Scer.....: -tgaatcgctttctagctactttttactacaagaaagcattcgcttaaaattaagagtgtatgttggcgcatttaggcaaacgtcttctaaattagggctatagacaattatgtcgctcg Spar.....: -tgaatcgcttgccaacggttttctattaccgg-aagtattcacctg--atta----tatatgtttgcatattcaaggaaacatctttcaagttgggaatgtagacactaatgccgctca Smik.....: tgaattcgcttgattgcctgtttcctttataggggattattcactag--atta----tttatgttgataaatcctagtagatgtttttttattgaaaaataaaaa-accaatctcactag Sbay.....: ctggtcgccttactcgctagttt--ttaccaaggagtattttacttt--atta----tatatgcagatatattcgagttagtgtattttagtacggaaataaagg----catttttcggg consensus: *** * *** * ** * **** * **** ** * * ** * * ** * Scer_spli: DDDDDD 120~240: Scer.....: tacatttttcagatgtagtgacgcaaatttctagcaatttgcaggtagtgctccacggcccccttccaatttttgtgcactcaatcgatcaaaacaatagagactgc-cctgttaacttc Spar.....: cacatacttcagatgcagtgacacatattcctagcaatctac-tgcagtattctacggccccatcccaatactgctg--------------------------------ctgtcaacttc Smik.....: caaacattttagatat--aagttt--ccaatcatcaatcggt-tgtgctgttatgcgacccatcgccgatatttgggaactcaagcaatcaaaacaaaagaaacttctttcaccaactcc Sbay.....: gcagtattccagtaat--taatacaagtaatcagtggcccat-tctattactatgtaacccttttctgtcttttgtgtattaaggtaatcaaa----------------ctgtcagccgt consensus: * ** * * * *** * * * * * 240~360: Scer.....: tcaacataattatgtaaaaaattatctcattaagccagat-----agcaaatatatcacatattgcattgattaatttgagaaaaatat-acatgtatcttttcagttaat-----ttta Spar.....: tcactctaattatgtaaaaaaacatttcaataagctaggt-----agcaaatatagcaaatattgctttga----tttgagaaaatt-t-agaggtatccttacagttagt-----ttta Smik.....: tcaacaaaaaagtgtaacaatcc-tctgaagaaattagat-----agcatatatacgacgtattccattga----tctaagataatttaaaggcaccttgcggtcagtggagagtgcttg Sbay.....: tcatcgaaataatgtaatggatt-tc-aaataggccagatgttgaaacatatatatcatgt-ctactttag----tttgagaagattctaagaagtacaatgacgacttttgtgccttta consensus: *** ** ***** * * * ** * * ** ***** * * * * ** * * *** * * * * ** Smik_spli: DDDDDD 360~480: Scer.....: ttaa-aaataaattatttccttacttttttttctacagtttgcac--cattaacctcttttcttgcatccatacatctttgaa-ctccatacatcttatttttttgctgttttttttcag Spar.....: acaa-gaataaatcatttccttactt----ttctagagcctgccctttatttatttttcttcttgcatccatacatcttagaa-atccgtacctcttacattttc---ttttcttttcag Smik.....: t----ggatagctttcctcctctttt--aata-taaaccgcccaatttattc---caaataattacatccgtacacctgtaaa-atccatacctctt----------ttttttctttttt Sbay.....: tcaacaaaaagggtagtttatcacac--agggctgaaattcgcagtatgttg---t-cttgtttacatccgtacatttgtaaacatctatacctctc----------ttaccgctttttg consensus: * * * * * * * ** * ** ***** **** * ** ** *** *** *** Sbay_spli: DDDDDD 480~600: Scer.....: tgtctcgggcatacaggccgcttatcttcatgccggcccatcatcctaggaaactctttcggtatg----ggccaagggcaggcgaaaa---------tcctatgtgcgt--ggagctga Spar.....: cgccccctacaatca-gcttttaattctcccaccatcccgtcgtctcgagtaattcgttcggcgtggttaggcctagggtaggcggaaa---------tcctaagtgcttcgagagccgg Smik.....: agtacctcggggta--t-tgtcccttcaattttaacgcggtcatttgagtatcttcattcagc-tttttcacccggaggtgagtggataa---------cccaagtgaactgag--ctgg Sbay.....: cgctcccgggaact--cgcgctaccccgcgccacgcacgactgtttgaacaaactcccttctc-tgcccaggccaacaatgagcggaaagtctggaaatcccaaaagcatcgag-cctgg consensus: * * * * ** * * ** * * * * ** * * * * * Smik_spli: DDDDDD 600~720: Scer.....: tacaatctcggctggcttggtttgtagggcacggtcaatgaatgcctgatggga-gaaaaattcatctt--tatg-aaaagtgatcttaatttgaatagtgtgcccttcaaaacattt-g Spar.....: cacgatgtgggctgacttggtttggagggcacaggagctgaatgcctgatggga-gaaaaattcgtctt--tatgaaaaagtagtcttaatttggatatattgccctttaaaacattc-g Smik.....: cgcgacgtggactgacttggcttggacggtacagcggcagaatttctaacgggaggaaaagttcatcttcgaatgaaaaagtagtcttatattgaatgtaa---cctttaaaac-tctag Sbay.....: cccagtacgggctgcgttggtttgcacggtacagctgttggatgtctgatagga-gaaaatttcatctt--aatgaaaaagccgtctaagattgaatattatgcccttaagaacattcag consensus: * * *** **** *** * ** ** * * ** ** * *** ***** *** **** *** ***** *** * *** ** **** * *** * * 720~840: total....: ====== Scer.....: gaagtcattaattgaaactatccagtgtgaatagacgactgagccatcATGAAGGTATGTAATATCACCCAAATCCTTAGAATTCTAATGAATCAGCACGCGCT-AACCGGCTGTTTCTG Spar.....: gaagtcactaatttaaaccatccagtgcgaacagacgactgagccatcatgaaggtatgtaatattacctaattcttt-gaattctaatggatcagcaggtgctgagcaggctgtccttg Smik.....: gagatagctaattgaaaccatttagtgtgaatagacgactgagccatcatgaaggtatgtaacatcaccctatcattt-gaattctaataaatctgcaggtgcttagtggactgccctcg Sbay.....: gatataagtaattgaaaccatcaagtgtgaataaacgactgagccatcatgaaggtatgtgaacctaccctaacattt-gaattctaaagaactagcagttgct--gaagaggatccata consensus: ** * ***** **** ** **** *** * ************************** * *** * ** ********* * *** *** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >================================================================= 840~960: Scer.....: ACTGTTTGATAAACGTATACCCACAAATTAG-TGCACTATAAT-AAAAATTCTCAAGAACAACGTTGTTTAAACG-AGATAATTCCCTCT---AATATACACGTACCGACACTT-----A Spar.....: gctgtttaataagcctataccaacaaattag-taaaccgtacc-aaaaattgtcaa----------cttcaaacg-aaataattcattct---aacgcaaa--taccaaagctttccaaa Smik.....: gcagttaaagaaacatctaccaacggataag-gaaaccgcaac-agaaattgt-tagaataataccttttacaaacgagtagtacgttttgt---tatgcaactgctgacacttc--gaa Sbay.....: gatatcaagtggactagcaccaccagacttgtgaaactgcggcaagaaatagtctagaacaatacatccaaggcccagaaaatgtgcatttcaaatacacgagaattggcatctcttaaa consensus: * * *** * * * ** * **** * * * * * * * * Smik_spli: DDDDDD known....: ======================================================================================================================== 960~1080: Scer.....: GGAAAATATCTCGCTAAGTTCAAATTAAGGAATGAAAA--AGGAATTTACGAAAAGGGTTTAGAAATATCAATGAAAATAAGAAA---AACCTGTAACGGAAGAAAGGACAGCAGGGA-T Spar.....: ggaaaataggccgctaagttcaaattaaagaatggaaa--tgacatttacaaaaagcacttagtaatatcaatcaaactaaaaaaaagaacttacaacagaaggacag--agcaggaa-t Smik.....: gaggtattctttcactagtttaaagtaatgaatggaaacatgaaatttacgaataggctttagtattgttcatgaaacttgaaac---caactttttaatgaaaactg--ggcaggaatt Sbay.....: cgggtgtagctcgccagatacggattgaggattggaaacacaagttataataatagcactgagatatatttatgaatgacaaaaa---aa----tcaaaaaacaacgg--agttgga--t consensus: * * * * * ** ** *** * ** ** ** * ** * * ** ** ** * * * * * ** * known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: TCGTTGGAATTTGT------CGATA---TTGGCTTCGGACAACTT--TACTAACAAATGGTATTATTTATAACAGTTGAACATTTCTTACCCAGTCAACGGGTCTCAAAAGACCTTCGAA Spar.....: tcgttggaatctactatgaactata---tcggcttcagagatttt--tactaacaaaagg-aatatttataacagttgaacatttcttacccagtcaacgggtctcaaaagaccttcgaa Smik.....: ttgttggaattcaatagaaactata---ttggcttctataattt---tactaac---aggcgtttttttcaacagttgaacatttcttacccagtcaacgggtctcaaaagaccttcgaa Sbay.....: ctgttagaatttgttattgagcttagcttttgctttgaagatttttatactaac-aaagacattatttataacagttgaacatttcttacccagttaacgggtcccaaaagactttcgaa consensus: *** **** ** * **** * * ******* * * *** ************************* ******** ******** ****** Scer_spli: BBBBBBBBB Spar_spli: BBBBBBBBB Smik_spli: BBBBBBBBBB Sbay_spli: BBBBBBB known....: =========================================================================>= 1200~1320: Scer.....: ATTGATGATGAACACCGTATTCGTGTTTTCTTCGACAAGAGAATCGGTCAAGAAGTCGATGGTGAAGCCGTTGGTGATGAATTCAAGGGCTACGTCTTCAAGATCTCTGGTGGTAACGAC Spar.....: attgatgatgaacaccgtatccgtgttttcttcgacaagagaatcggtcaagaagtcgatggtgaagccgttggtgatgaattcaagggttacgtcttcaagatctccggtggtaacgac Smik.....: attgatgatgaacaccgtatccgtgttttcttcgacaagagaatcggtcaagaagtcgatggtgaagccgttggtgatgaattcaagggctacgtcttcaagatctctggtggtaacgac Sbay.....: attgatgatgaacaccgtatccgtgttttcttcgacaagagaatcggtcaagaagttgatggtgaagccgttggtgatgaattcaagggttacgtcttcaagatctccggtggtaacgac consensus: ******************** *********************************** ******************************** ***************** ************ 1320~1440: Scer.....: AAACAAGGTTTCCCAATGAAGCAAGGTGTTTTGTTGCCAACTAGAATCAAGTTGTTGTTGACCAAGAACGTTTCTTGTTACAGACCAAGACGTGATGGTGAAAGAAAGAGAAAGTCCGTC Spar.....: aaacaaggtttcccaATGAAACAAGGTGTTTTGTTGCCAACCAGAATCAAGTTGTTGTTGACCAAGAACGTTTCTTGTTACAGACCAAGACGTAATGGTGAAAGAAAGAGAAAGTCTGTC Smik.....: aaacaaggtttcccaATGAAACAAGGTGTTTTGTTGCCAACCAGAATCAAGTTGTTGTTGACCAAGAACGTTTCTTGTTACAGACCAAGACGTGATGGTGAAAGAAAGAGAAAGTCCGTC Sbay.....: aaacaaggtttcccaATGAAGCAAGGTGTTTTGTTGCCAACCAGAATCAAGTTGTTGTTGACCAAGAACGTTTCTTGTTACAGACCAAGACGTGAAGGTGAAAGAAAGAGAAAGTCCGTC consensus: ******************** ******************** *************************************************** * ******************** *** 1440~1560: Scer.....: AGAGGTGCCATTGTTGGTCCAGATTTGGCTGTCTTGGCTTTGGTCATTGTCAAGAAGGGTGAACAAGAATTGGAAGGTCTAACTGACACTACTGTTCCAAAGAGATTGGGTCCAAAGAGA Spar.....: AGAGGTGCCATTGTTGGCCCTGATTTGGCTGTCTTAGCTTTGGTCATTATCAAGAAGGGTGAACAAGAATTGGAAGGTCTAACTGACACCACTGTTCCAAAGAGATTGGGTCCAAAGAGA Smik.....: AGAGGTGCCATTGTTGGCCCAGATTTGGCTGTTTTGGCTTTGGTCATTATCAAGAAGGGTGAGCAAGAATTGGAAGGTCTAACTGACACCACTGTTCCAAAAAGATTAGGTCCAAAGAGA Sbay.....: AGAGGTGCCATTGTTGGCCCAGATTTGGCTGTCTTGGCTTTGGTCATCATCAAGAAGGGTGAACAAGAATTGGAAGGTCTAACTGACACCACTGTTCCAAAGAGATTGGGTCCAAAGAGA consensus: ***************** ** *********** ** *********** ************* ************************** *********** ***** ************ 1560~1680: total....: ====== Scer.....: GCTAACAACATCAGAAAGTTCTTCGGTTTGTCCAAGGAAGATGACGTTCGTGATTTCGTCATCAGAAGAGAAGTCACCAAGGGTGAAAAGACTTACACCAAGGCTCCAAAGATCCAAAGA Spar.....: GCTAACAACATCAGAAAGTTCTTCGGTTTGTCCAAGGAAGATGACGTTCGTGATTTCGTCATCAGGAGAGAAGTCACCAAGGGTGAAAAGACTTACACCAAGGCTCCAAAGATCCAAAGA Smik.....: GCTAACAACATCAGAAAGTTCTTCGGTTTGTCCAAGGAAGATGATGTTCGTGATTTTGTCATCAGAAGAGAAGTTACCAAGGGTGAAAAGACTTACACTAAGGCTCCAAAGATTCAAAGA Sbay.....: GCTAACAACATCAGAAAGTTCTTCGGTTTGTCCAAGGAAGATGATGTTCGTGATTTCGTCATCAGAAGAGAAGTTACCAAGGGTGAAAAGACTTACACCAAGGCTCCAAAGATCCAAAGA consensus: ******************************************** *********** ******** ******** *********************** ************** ****** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1680~1800: Scer.....: TTGGTTACTCCTCAAAGATTGCAAAGAAAGAGACACCAAAGAGCTTTGAAGGTCAGAAACGCTCAAGCTCAAAGAGAAGCTGCTGCCGAATACGCTCAATTGTTGGCTAAGAGATTGTCT Spar.....: TTGGTTACTCCTCAAAGATTGCAAAGAAAGAGACACCAAAGAGCTTTGAAGGTCAGAAACGCTCAAGCTCAAAGAGAAGCTGCTGCCGAATACGCTCAATTGTTGGCTAAGAGATTATCT Smik.....: TTAGTCACTCCTCAAAGATTGCAAAGAAAGAGACATCAAAGAGCTTTGAAAGTCAGAAACGCTCAAGCTCAAAGAGAAGCTGCTGCTGAATACGCTCAATTGTTGGCTAAGAGATTGTCT Sbay.....: TTGGTCACTCCTCAAAGATTGCAAAGAAAGAGACACCAAAGAGCTTTGAAGGTCAGAAACGCTCAATCTCAAAGAGAAGCTGCTGCCGAATACGCCCAATTGTTGGCTAAGAGATTGTCT consensus: ** ** ***************************** ************** *************** ******************* ******** ******************** *** 1800~1920: Scer.....: GAAAGAAAGGCTGAAAAGGCCGAAATCAGAAAGAGAAGAGCTTCTTCTTTGAAGGCTTAAgt-----atgtcttggacctgcataatttt-----tatactttttcctt-ttagata--- Spar.....: GAAAGAAAGGCTGAAAAGGCTGAAATCAGAAAGAGAAGAGCTTCTTCTTTGAAGGCTTAAatttagaaagcagtgaaaataaattcttttgttcaaaaactcctttcttattctgtattt Smik.....: GAAAGAAAAGCAGAAAAGGCTGAAATCAGAAAGAGAAGAGCTTCTTCTTTGAAGGCTTAAgt-----atgtcttggacctgcataatttt-----tatactttttcc-tcttagata--- Sbay.....: GAAAGAAAGGCTGAAAAGGCTCAAATCAGAAAGAGAAGAGCTTCTTCTTTGAAGGCTTAAgt-----atgttttggacctgcataatttt-----tatactttttcctttttagata--- consensus: ******** ** ******** ************************************** * * * ** * * ** **** * *** ** * * ** ** Scer_spli: DDDDDDDDDDD Smik_spli: DDDDDDDDDDD Sbay_spli: DDDDDDDDDDD 1920~2040: total....: ======= Scer.....: tatgtactttt-ggcttaa-----------------tttaatataattaac---tataacttcgattttattctttgaaggtccaaatgcacgtaattcataaacttatgatgc--attg Spar.....: tgtgtgtttctaagcttaaaatcaaataactttattttttatataattaacaaaaagaaaaataatcatatgtactgtaaacgagaattgatatgaattctcaattgagtatcccaaccg Smik.....: tatatactttt-ggcttaa-----------------ttcaatacaattaac---tataacttcgattttattctttgaagtttcagatgcacctaatttgtaaactacttaag---atcc Sbay.....: tatatactttt-ggcttaa-----------------tttaatataattaac---tataacatcgattttattctttgaagaagcgaaggcatataattcgtaaattattcgac---gt-a consensus: * * * ** * ****** ** *** ******* * ** ** *** ** * * * * * * * ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 2040~2160: Scer.....: ttctattt---cttgaagtccttgggatgagtgatgagaaaa----ttttcttgaaagttaa---ataatataataaaattc-taaaagttaaattttatagctaaacataaactatttc Spar.....: gtcacctttggctaaaagttatgtaaaaaagaaataacaaaa----ttgctacgtgtttcaagatgctatataaaatggtttacaaaagttcagtatagcagcaacagatcgggtatcca Smik.....: ttttctttt--ttcatgtttttctcgctgtgatgtgtgacagcaatttaacagaaaagttttccttaacgttaagaatttctacgaaaactgagttcaatagctaaacataaattatttc Sbay.....: tttttattt--ttcata-ttttctagaagt-atgtatctta-----ttatcagaaatttcttattaggccggtaaaaaatcaa--aaacataagttattcagctaaacattaactatct- consensus: * ** * * * * * ** * * * * *** * * * *** * * ** *** Sbay_spli: DDDDDDD 2160~2280: Spar.....: gtttcatcgcttcatctcacagtaaccaattcttctgcgctagttggatgaatagcaacacaattatcaaaatcagccttggtggcacccatctttatagcaacaccaaacccttgcaag 2280~2400: Spar.....: atttctgcagaggaagtaccaacaatgtacagaccgacaaccttctcatttggccccacacagacaattttatatcttgtaggcgatttttcactcaacatagcatagtacatagcggtg 2400~2520: Spar.....: aatttagaattgtagactttaatattctccttaccgtatttttcaatggcttccttctcagaaataccaatgaaaccggcttctgggtgtgaaaatattacactggggacgttttcataa 2520~2640: Spar.....: tcaagtttgtcattgcgaaatttctcaggaccaaacaatctattagatagctttctacctgctgcaatggcgacgggaatcaattcaacttttccaacaacgtcgctagagaataaatgt 2640~2760: Spar.....: tagggaaacattggtattttgatattcatcagcggtgatttggtcatgagagttcagctttatacctatgttttctgaactcataccgaaatgtgatttacgtccaattgtccaaattaa 2760~2880: Spar.....: ttcgtcaacgtcatcgatggactttgagtcattcatatgtattttcaatttgttggtttcttcattcttctccaccttaacaattttgggtagttaatgaacattgatgccctcgtttat 2880~3000: Spar.....: gtaatggtcggtaatggtgctctggatgcgttcatcaaattttctcaagacagtttcacccctaatgaccaagtgcgtttcggagcctagcccatggaaaacacctgctaattcaatacc 3000~3120: Spar.....: aatataaccagcaccaacgtcaacaactttcttgggttgctcttctaacctgaagaacccgtcagaatcagtacctagttcgaaacctggtatgctttcagggaaaatagcctttccgcc Spar_spli: DDDDDD 3120~3240: Spar.....: ggttgcgattaaaatatgattagctgagtaaacttcagtggtattatctcttttctgcacttcaacgttaccgtccttattaaacctggcccacccaaatacaacatccactttttcttt 3240~3360: Spar.....: atccaaatttttctggtatataccgttcaatctatggacataagcgtcccttttctgcttgatttctggccaattaaatgacaaatgctctttatctaatggaagattctgatataatcc 3360~3480: Spar.....: atactcctttgcatgggatactctagtagccaggtcagaagcataccacatgactttcttagggacaacccacgctaacacaggtgccaccaagtgtcttagctcctactagtaatgttt 3480~3600: Spar.....: ttgcaccataagatgcagaccttcttgcggaagcaacacctcctgagccacccccgataacgggatattcatagacattgttctttctgtaaaattctaaatgattgcttagttgcagaa 3600~3720: Spar.....: tgcatgaagttctgtaaatgaatatataaatatatatgaaagaaaaccgtaaaataagattgaagaatgagaaccgcctgagaaaaatcagaaatgcttcttatatttttttagcctcac 3720~3840: Spar.....: ttcaacattagattccaaatgaaaagctccgaaatcctcgaaaaattgacgagggtcgtgcttactaagagacgtcaagaaatatcacgcactttgacaacgacaggaagagggaaaaac 3840~3960: Spar.....: agcaaatgctgtgcaaacgaattaaattatttactgatacagctacgtgaaatgcttgacaattatgtatacataacacaacaacttatgctaaacgcgtggaatctagagccgagtttg 3960~4080: Spar.....: attcttccacgctttcaatgctgtttgttatacggagaaatggtcgttttctccgtatctgacactgaaaatagtgaagatttactggcggcatgaaggaccttttttgaatacccatgc 4080~4200: Spar.....: aatgtgcataaaaggcatagaattgaccaacaaacgcaaacaccgccgtatatggttcctaggactctgaatgcatatagtggaacgtactgatcatattgcacgtatagctcttcgttt 4200~4320: Spar.....: cctagagacatagtacccatcgtgaaagtcattccccaaaaacctttttgaaaggtataaactctcttcactttccctgtctcactttcaatctcttttttattgtaatacgacagaatt 4320~4440: Spar.....: gaaaggacggaaatcacagtaaaaaagtagcccatggaaagcaaccctatagcagagataatgcctagaactttgaaacaccatggaaccgcaatagccagtatttcttgttctctagta 4440~4560: Spar.....: acgttatccgtttggtaatatttgtccacatacttttttatattgtctgtaagcaacaaaaccccaaaactgccttggcccatcggccccaaaagcaggaacagcgtggaaacctgcgtc 4560~4680: Spar.....: atcggcggtatcttattgatataaagactccagaagtatatcgccatcaatatgaaaatgaagataatggcatgtagccaggtcaaggcacatattaccaacgttattagttgaatattt Spar_spli: DDDDDD 4680~4800: Spar.....: ctattgaacgcatgaccaaatatttctgacattgtgaatgttccacaacttgaagcgacgacgattagcggaacgatatctagcagcaatacaattttcatgttctcggatgccattctg 4800~4920: Spar.....: atattatatgaaggataattcccaatcccttccaaagagtaataatcatgccaaatgaggaatgtgataccccaagctattactaaacagactgccagatcataccaccacaggaaataa 4920~5040: Spar.....: acaaataccatcaagttcttggaattagtagggcttttcgtagtgtactcttttgacagtgctcctaagaaatttataattgtaactaatcccatgggataagtaccccaaaataaattg 5040~5160: Spar.....: tgcttcatatttctgaaaaagtcattgaaatattctctgaagcttttctccatgatataaataatcaaatgtaacagttgcagggcctgtacagcaatgaaaataaggcacgtgatagcg 5160~5280: Spar.....: aacatgatatatgagcatattcttaaccatcttgcaggatatgggaagttatatagaacattcgatgaaataccgacacccatgaccataacaaacatgaagggatcgaactgcctcatg 5280~5400: Spar.....: acagcaagtatccaattggcagccatttatattccactttttttcttctatactataaaccgtcttcaaaatacgcgtattgtctgagctcaaccaacaattgttattgagggaagaagt 5400~5520: Spar.....: ttggtttatattatttatacctgaggagtccatgcagtaaagatcataggttataaatgtaacaagacaaggatatatatgctggttgactattctattagaacctttgtttaaatatat 5520~5640: Spar.....: caagtacccatcttgagcaaaaaataagcgcaagaattccaagacaaccccaatatgccaaacacggcgatgagtcttctgctttttagattcatgcacttgcagcttttccgctacagg 5640~5760: Spar.....: cgcggtacaaggataataaaaacttgatagtttgcaaaaaaattatcagtcgatggaagggagacatcgctattgttgccttatacgatacgctgcgaaaacgataataatttcttattt 5760~5880: Spar.....: tgtcatccttgtgggagactcaataggttgaatgatgtagcacggcaaagtagaagtgccactttgacgccatacccccttctcttttgtcatatttgattatttgtatacagccagtaa 5880~6000: Spar.....: cacacaaagaaaatgacagaacgagtaaaaatcgacttgttggataacttaaattggctatttgttattatacagaattaaataggatttagagagggtgagaaagaaagaaaaaaagaa 6000~6120: Spar.....: accactaatagtgagaaagaaaatcaaatgtaaatgataatcctatcagcccaaaaagattagaatgccgtgtacgcacatccatattttatattcatatgttttttagagtacatgcaa 6120~6240: Spar.....: aagaaagaataagaagtagagaaatcaacggaaatcagtcttaccggcaccacgcttaccgctgaatagatgctttgataaggaaacagcattgtgtctatcagattcaccttgcttggc Spar_spli: DD 6240~6360: Spar.....: atgtctgtttctttctcttctttccatcttggccattctttcagccttggatctcatggaaccatcagcaacaccatccaaaaatctatcggtttgtcttaacttgacaccattgttggc Spar_spli: DDDD 6360~6480: Spar.....: ttaatttaatataattaaccataacttcgatttttttctttgataaaccacttgaggcattgtgtttttttgagtttttggttgttatgtatgataaataccctaatttccataaacagg Spar_spli: BBBBBBB DDDDDD 6480~6528: Spar.....: aggaaatttttacaaaactaagttcaatagctaaatataaactatttc { alias......: ['PCH2'] chromosome.: 2 description: Putative ATPase end........: 602318 exons......: [(1, 1551), (1665, 1808)] gene.......: PCH2 introns....: [(1552, 1664)] length.....: 1808 name.......: YBR186W plength....: 602 start......: 600511 tdist......: 210822 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 5 donors and 2 branches Smik: 5 donors and 1 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 680), ('Spar', 680), ('Smik', 680), ('Sbay', 680)] ->[('Scer', 2179), ('Spar', 2179), ('Smik', 2179), ('Sbay', 2179)] ->[('Sbay', 1050)] ->[('Sbay', 1837)] ->[('Sbay', 2381)] ->[('Smik', 451)] ->[('Smik', 2516)] ->[('Smik', 2718)] ->[('Spar', 293)] ->[('Spar', 2275)] ->[('Spar', 2402)] ] [ ->[('Scer', 2250), ('Spar', 2250), ('Smik', 2250), ('Sbay', 2250)] ->[('Scer', 1662)] ->[('Spar', 1317)] ] 0~120: Scer.....: ctcataagcttagct--gaatggataggcttgctttctgatggaaatttgccttgcttttccaactattccattact--caggttttatttttttattttgtaatatggggagaaggccg Spar.....: ctcataagtatagtt--gaacggtttagcctgcttgttgagggag--ttaccttgccattcctattattcaagtactgttagctttcaattttttattttgaaatattgggagaaggccg Smik.....: ctcataagtttactt--aaacagtttagttgaattgacgagtgaaattt--cttgctgtacttattagttaagaattctcagtttttaatttttcattctgtataatggggagaaagccg Sbay.....: ctcataagcgtagtttgaaacgattcagctagattttttaagcacagttttattatcctgttt-ctataaagcctcttcttaccttcaattttttatttcatgaacatgggt........ consensus: ******** ** * ** * * ** * * ** ** * ** * ** * ***** *** *** *** **** 120~240: Scer.....: gcagaata-tttacggacaaatgaataaattggattggattgactagtggaacgtgtaaaga-tcgcgatactccgtaccaatcaccgaaag-attgcccgtaaccgaaatgactccatt Spar.....: gtagaataatttacggaaaaataaataagtgggagt-----gattaatgaac--tctaaaga-tcacgata-tccgtatcgaacaccaaaag-gttgctcgtaactaaaagctttccatt Smik.....: gtagaacagtttacggacaaataagtgagaaggattg-attgaatattagaatgtgtaaagaaccataata-tccgcttcaaatacggaaag-gccgtccgtaacaaacagactttcact Sbay.....: .............................................................................gaagtttgccgaaagagttgtacatactcgaatatcttttgta consensus: * **** * ******** **** * * * *** * ** ** * * * ****** * *** **** * **** * * ** * * 240~360: Scer.....: ctctgaattttttgtgaaaccaatatctgagactcttccttcatcttatcaacgtattgttcagtcaattaagtaagaagtatatttg-agcgcagccttaat--catata--tagcacc Spar.....: ctcagtattctgcgc-agaccaatgtttgtgaaccttctttcactttattggtgtatgaccctgttaattaagtaggaagtatatttc-atagtacttataatatcatatg--tagtatc Smik.....: cttgataccttgctgaacaaaccttttgaaaaccccctttttattttatcaacacttagtctggttaagcaaataagttatatactc--actgtggttataattacaagta--gttccca Sbay.....: cttgatact-tgtagagggtttttgcttaggtgcctacttctaaatttctagtaaatacacgttttaatgaggtgtggtggataagcataacattcttctaacgattatcaattatccta consensus: ** * * * * * * ** * * ** * * * *** * *** Spar_spli: DDDDDD 360~480: Scer.....: a--gttatatgtttgcccct-ctcttgagttgaaaaacacataat--acatagtact----gtacttttctctttttcatcgttggcgaaaatataatctttctcaaaaatatatatata Spar.....: aaggctttctcctcatcggtgttcttgaattagtgaatacatagt--actgtgcacc----atactttgcttattttattggttgac-aaattatattctttctcatcaaaaaggatata Smik.....: aagccactctcctccatgattttatgaactgatttagtacttaatctgtaaggtacttaatatgtatattctgttcttctgcctggcaaaagtatgtcctttttt-tcagcacaaaaaaa Sbay.....: aaaacttaacaatctgcggtatcttgaaat--gtaaacacaaaac--atgctgca------agcctttgcctacattttgatttggc-aaatcaggtctctttttatgaaaaaaaaaggc consensus: * * * * * * * ** * * * * * ** * *** * ** * * * * Smik_spli: DDDDDD 480~600: Scer.....: tgtatatatatccttagatttgccgttgacaataaggtgggcggcaaatctacgaaa-tgcgaggcggttaaaagagagtgacaacattttcataaaaatattctgatctcaaactgaag Spar.....: ----------ttcttaacttgtctgttggctatgagatgggcggcaaatctacgaaa-tgcgaggcagtagaaagagaatgacaatgatttcataacgatactttaatctcaaagtgaaa Smik.....: --------------tttccttgctattaataaaaaggtgagcggcaaatctacgaaa-agttaggcaatacatagagaacaataatacttccataacaataatttaa-ctcaaactgaat Sbay.....: -----------tttttctgttgttgttaaacagaggatgggcggcaaactttcggttcttttaaaagctaaataaaggattaaggtatttttataataggagtgtgatcttgaattaaga consensus: * * ** * * ** ******** * ** * * * * ** * ** **** * * * * ** ** * * 600~720: total....: ====== Scer.....: acata----------aaataaggatATGAGCTACATAGTTGACCTACAAGTGCGAGGATCATCTCTGAGGGTTATCAAATGTATGTTTAGAGAGGATGAGCAAATTTCTTCTCTACATTC Spar.....: acata----------gaacaataatATGAACTACGTCGTTGATCTACAAGTGCGAGGATCATCTCTGAGGGTTATCAGGTGTATGTTTAGAGAGGAGGAACAAAGTTCTTCCCTACAATC Smik.....: atata----------caacaaaaggATGAAGTACATCGTTGATCTACAAGTACGGGGATCATCTTTGCATATTATAAGATGTATGTTCAAGGAAGAAGAGCAAAGTTCTTCTCTACAATC Sbay.....: acgtatcaaagcaaaaaaaagcaatATGAAATACGTTGTTGATCTGCAAGTACGAGGATCGTCCTTAAGTGTTATACGGTGTATGTTTAAAGAGGAGGAACAAAGTTCTTCCTCACAGTC consensus: * ** ** * **** *** * ***** ** ***** ** ***** ** * **** ******** * ** ** ** **** ****** *** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 720~840: Scer.....: TGGTTCTGACTCGAAACAAAACAGCA---ACAAAAAGCTGGGAGAATTTTTGAATCTGTTAAAAGCAGTGGTCAAGAGGAAGTTGGAAAGTTTCCCAAAAGACCGTTTAAAGACTTCGAT Spar.....: TGGTTTTGACTCGAAACAAGATAGCA---GCAAAAAGTTAGGGGAATTTTTGAATCTTTTAAAAGCAGTTGTCAAGAGGAAGTTGGAAAGTTTCCCAAAAAATCGTTTGAAGACTTCTAT Smik.....: TGGTTTCGACCCTAAACAAGGTAGCA---ACGAAAAGTTGGGGGAATTCTTAAATTTATTAAAGGCAGTTGTCAAAAGAAAGCTGGAAAGCTTCCCAAAATGTCGCCTAAAGAATTCGAT Sbay.....: TAGTTTAGACTCCAAACAAGATAATACTAGTGAAAGGCTAGAGGAGTTTTTAAATCTCCTAAAGGTAGTTGTTAGGAGGAAGTTGGACACCTTCCCGAATAGTCGCTTGAAGGATTCAAT consensus: * *** *** * ****** * * *** * * * ** ** ** *** * **** * *** ** * ** *** **** * ***** ** ** * *** *** ** 840~960: Scer.....: TATAACTGGCCAAGAATTAATGAGAGAGGGGCAAGGAAGTATTGAAATTAAGGATCCACCAACGGAGGCGCAACAACATTTGATTAGAAGCCTAGCAAAAGTTTTATTACACCAGTTTTC Spar.....: TATAACGAGTCAAGAGTTGATGAGAGAAGGACAAGGAAGCATCGAAATTAGGGATCCACCAACTGAGGCGCAACAACATTTGATTAGAAGCTTAGCGAAAGTTTTGTTACATCAGTTTTC Smik.....: TATAGCAGGCGAAGAGCTAATGAGAGAAGGGCAAGGAAGCATTGAGATTAGGGATCCACCAACTGAGGCACAGCAGCATTTAATTAGAAGCTTAGCAAAAGTTTTGTTGCACCAGTTTTC Sbay.....: TATAACAGGGCAAGAATTGATGAGAGAGGGACAAGGAAGCATTGAAACCAAGGATCCACCAACCGATGCACAACAGCATTTGATTAGAAGTTTGGCAAAAGTTTTATTGCATCAGTTTTC consensus: **** * * **** * ******** ** ******** ** ** * * ************ ** ** ** ** ***** ******** * ** ******** ** ** ******** 960~1080: Scer.....: AAGCATAAATGGCAAAGTTAACACAGTAAATGAAGGACAAGATAATTTGTTTCTATCCTTATTCGTTAAAAAAATTTCTATAGAGCAACAGTCCACATCACACGTCTCTATTAAATTGAA Spar.....: AAGTATAAGTGGTACTGCTAGGACAGTAAATGAGGGACAGGATAATTTGTTCCTATCTTTGTTTGTCAAAAAAATTTCTATAGAGCAACTGTCTGTCGCTTACGTCCCCATTAAATTGAA Smik.....: AAGTATAAGCGCTACTGCAAGGACGGTTAATGAAGGACAAGATAATTTGTTTCTATCTTTGTTTGTTAAGAAAATTTCTATAGAGACAATGTCAGCATCTTATGTCCCCATTAAATTAAA Sbay.....: AAGCGCAAGTGCTTCCGCAATGACGGTAAACGAAGGACAGGATAATTTATTTTTATCCTTATTTGTTAGAAAAATTTCGATCGAGCCAGTGTCAGTTTCTCATGCTCCCACTAGATTGAA consensus: *** ** * * * ** ** ** ** ***** ******** ** **** ** ** ** * ******** ** *** * *** * * * * * ** *** ** Sbay_spli: DDDDDD 1080~1200: Scer.....: CTTTCATGAGAAAATAAATTTGGGTCAGCACATAGATTCTATTTTAGATTCAGAGGAGACCAACGAGTCGGACACTTATCACATGGGATCTGTTGACGAGTTCATTATATATCCCTTTTG Spar.....: CTTTCATGAGAAAATAAATTTGGATCAGCACATAGATTCTATTTTGGAATCAGAAGGGATCGACGAATTAAACACTTATCAGGTGGGTCCGGTCGACAAATTCATAATATATCCTTTTTG Smik.....: CTTTTATGAGAAGAAAAATTTGGACCAGCATATAGATTATATTTTGGACTCTGAAGAAATTCAGGACTTAAAGACATATCAAGAGTCAGCACCCGATGAATTTATGATATATCCTTTTTG Sbay.....: CTTTCATGAGAAACTGAATTTGGACCAACATATAGATTCTATTTTATGCTCTGAAGAGATTGAAGAGTCAAGAACATACCAAGTTGGGGCGGTTAATGAGTTTATAATCCATCCCTTTTG consensus: **** ******* ******* ** ** ******* ****** ** ** * * * ** * ** ** ** * * * ** ** ** **** ***** 1200~1320: Scer.....: CTGTCTGGAAGAGCAAGATGAGCTGAAAAATGGCAGCATACTGTCCACAGAGTTCGACAAGATTGACTTAGAACTAGACGAGGATGATGGTTTTGAGGGAGAAACTTTAAACAATTGTAT Spar.....: CTGCCTGGAAGAGCAAGGGGAAGTGAAAAATGGGAGCATACTGTCCACAGAATTCGACAAAATTGACTTAGAAGTTGATGAAGGTGACGATTTTGAAGGAGAAACCTTAAACACTCGTAC Smik.....: CTGCCTGGAAGAGAATAAAGGATTGAAAAGTGGTAACATTTTGACTACAGAATTCGATAAGATTGACTTAGAATTCGATGAAGATGACAGTCTTGAAGGAGAAACTTTAAACACTTGCCT Sbay.....: CTGCTTGGAAGAGTACAAAGACTTGAAAAGTGGTAATATACTGTCTGCAGAATTCGACAAGATTGACTTAGAAGTTGATGAAGAAGAAGATTTTGAAGGGGAAACTTTAAACTCTTGCAC consensus: *** ******** * * ****** *** * ** ** * **** ***** ** ************ * ** ** * ** * **** ** ***** ****** * * Spar_spli: BBB 1320~1440: Scer.....: CAATTCGGTGGGAAATTTTGACATTCCACTAAGTAAGCAAACACTAAACTTAGTAAATATATCATATCTTCCAGGCACAACTTTCGAGGGCCAATGGGAATCGTTGTATTTTGGTAACAA Spar.....: TAATTCAGCGGGAAATTTTGACACTCCACTAAGTAAGCAAACACTAAGCCTCGTGAATATATCATATCTTCCGGGGACAAATTTCGAAGGGCAATGGGAATCGTTGTATTTTGGTAATAA Smik.....: CAATCCACATGGAAATTTTGACATCCCACTGGCTAAACAAACACTAAATCTCGTGAACATGTCTCTCCTTCCGGCTACAAGTTTGGAAGGACAATGGGAAGCGTTGTATTTTGGTGATAA Sbay.....: CAATTCAGTGGGCAATTTTGATATTCCACTTACGAAGCAGACACTCAATCTCGTAAGCATATCATTTCTTCCAAGTACCAGCTTCGAAGGCCAATGGGAATCTTTGTATTTTGGTAACAA consensus: *** * ** ******** * ***** ** ** ***** * * ** * ** ** ***** ** * ** ** ** ********* * ************ * ** Spar_spli: BBBB 1440~1560: Scer.....: TATTAAAGAAAGGTTATATAGCTACGCAACTATATCTCTCAAGATAGCAAGATTCAAACAAACTGGAGACTCCAATCAAGAAGACATTACAACGCTAATCACAAATAATAAATTACTCCT Spar.....: TATTAAAGAAAGACTATATAGCTACGCAACTATATCCCTTAAGATAGCGAGATTCAAACAAACTGGCGACTTCAATCAAGAAGACATTAAAACGTTAATAACAAATAATAAATTACTCCT Smik.....: TATTAAAGAGAGACTTTATAGCTACGCAACCATCTCTCTCAAAATAGCAAGGTTCAAAGAAACTGGGAACTTAAATCAGCAGGATAGTAAAACGTTGATAACAAATAACAAATTGCTCCT Sbay.....: TATTAAAGAGAGACTCTATAGTTATGCAACTATTTCCCTCAAAATAGCAAATTTCAAGCAAAGCGGAAATTCAAATCAAGAAGACGTCAGAACTCTAATAACAAACAATAAATTACTTCT consensus: ********* ** * ***** ** ***** ** ** ** ** ***** * ***** *** ** * * ***** * ** * *** * ** ***** ** ***** ** ** 1560~1680: Scer.....: TGTCCATGGTCCTCCGGGAACAGGTAAAACAACGTTATGCAAAGCACTTTGCCAAAAATTATCTGTGAGGCGGGAATTTTCAGACGGTTCCGATACCATTGATACTAATTATAAGGGGAT Spar.....: TGTTCATGGCCCTCCGGGAACAGGTAAAACAACGTTATGTAAAGCCCTTTGCCAAAAACTATCTGTGAGGCGAGAATTTTCTGCTGCTTACGATACCATCGATACAAGCTATAAGGGAAT Smik.....: TGTCCATGGCCCTCCAGGAACAGGTAAAACAACCTTATGTAAAGCCCTTTGTCAAAAACTATCTGTCAGACGGGAATTCTCTGACAATTTTGGTACCATCGATACAAGTTATAAGGGAAT Sbay.....: TGTTCACGGCCCTCCAGGAACAGGTAAAACGACCTTGTGTAAAGCCCTTTGTCAAAAGCTATCTGTGAGGAGAGAATTCTCTGAAGCTTCCAATACCATCGATACAAAATACAAGGGGAT consensus: *** ** ** ***** ************** ** ** ** ***** ***** ***** ******* ** * ***** ** * ** ****** ***** * ** ***** ** Scer_spli: BBBBBBB 1680~1800: Scer.....: AATAATAGAATTGTCTTGTGCACGCATCTTTTCTAAATGGTTTGGAGAATCGTCAAAAAATATATCAATAGTATTCAAAGACATTGAGGAGCTTTTAAAGGTCAATGAGGGACGAGGGAT Spar.....: TATAATAGAATTGTCTTGTTCACGCATCTTTTCTAAATGGTTTGGAGAATCATCAAAAAATATATCAGTAATATTTAAAGACATTGAGGAGCTTTTAAAGGTCAATGAGAAACATGGGAC Smik.....: AATGATAGAATTGTCTTGTTCACGCATTTTTTCCAAGTGGTTTGGGGAATCATCAAAAAATATATCTATAATATTCCAAGACATCGAGGAACTTTTAAAGGTTAATGAAAAGAACGGAAT Sbay.....: AATTATTGAATTGTCTTGTTCGCGCATCTTCTCTAAATGGTTTGGAGAGTCATCGAAAAACATATCCATAATATTCAAAGATATTGAGGAGCTTCTGAAGGTTAATGAAGAGCATGGAAT consensus: ** ** ************ * ***** ** ** ** ******** ** ** ** ***** ***** ** **** **** ** ***** *** * ***** ***** ** * 1800~1920: Scer.....: CTTTATATGCCTTTTGATAGATGAGGTTGAAGCAATAGCAAGTTCAAGAACAAATTTGTCAAGTAGAAATGAGTCAACAGATGGAATCCGAGTTGTGAACACTTTACTTACGCAACTTGA Spar.....: CTTTATATGTCTTTTGATAGACGAGGTTGAAGCAATAGCAAGTTCAAGAACAAATCTGTCAAATAGGAATGAATCAACAGATGGAATCCGCGTTGTGAACACTTTGCTTACGCAACTTGA Smik.....: TTTTATATGTCTTTTGATAGATGAGGTTGAAGCAATAGCAAGCTCGAGGACTAATTTGTCAAATAGGAATGAATCAACAGATGGCATTCGTGTAGTGAATACTTTGCTTACTCAACTTGA Sbay.....: TTTCATATGCCTTTTAGTAGATGAGGTTGAAGCAATAGCATGTTCAAGAACAAATCTACTGAATAGGAATGAATCAACGGACGGTATACGAGTCGTGAACACTTTACTGACTCAACTTGA consensus: ** ***** ***** **** ****************** * ** ** ** *** * * *** ***** ***** ** ** ** ** ** ***** ***** ** ** ******** Sbay_spli: DDDDDD 1920~2040: Scer.....: CAGGCTGAAAAAATACCATAACTTTTTAGCATTAGCCACGTCTAATTTATTAGATTCATTAGATGATGCTTTTGTTGATCGAGCAGATGGAGTTTTTTATGTTGGAAATCCAACAGCTGA Spar.....: CAGGCTGAAAAAATATCATAACTTCCTGGCATTAGCCACGTCTAATTTACTAGATTCATTGGATGATGCTTTTGTTGATCGAGCAGATGGAGTTTTTTATATTGGAAATCCAACAGCTGA Smik.....: CAGATTGAAAAAATACCATAATTTTTTGACACTAGCCACATCCAATTTGTTAGATTCTTTAGATGACGCCTTTGTTGATCGTGCGGATGGAGTATTCTATATTGGAAATCCAACGGCAGA Sbay.....: CAGACTGAAAAAATATCATAACTTTCTGACATTGGCCACGTCTAATCTTCTCGATTCATTGGACGATGCCTTTGTTGATCGGGCAGATGGGATCTTTTTTATTGGAAATCCGACAGCTGA consensus: *** ********** ***** ** * ** * ***** ** *** * * ***** ** ** ** ** *********** ** ***** * ** * * ********** ** ** ** 2040~2160: Scer.....: GGGCATCCTCCACATTCTAAAGGTTTGCATAGAGGAGATGATAACTTCAGGTATAATTCTTTTTCACGCAAGATCAACTGGAGTCAAGTTCTTCAATAAATATCAGGACATTTTGCGGAA Spar.....: GGGCATTCTCCATATTCTAAGGGTTTGTATAGAGGAGATGATAACTTTAGGTATAATTCTCTTTCACGCAAGATCTTCCAGATTCTCGTTCTTCGACAAATATCAGGACGTTCTGCGGAA Smik.....: GGGTATTCTTCAGATTCTAAGAGTTTGTATAGAAGAGATGATATCTTTGGGTATAGTTTCTTTTCATGCGGTATCATCTGGAGTCTCTTTTTTCGAGAAATATCAAAAGAGTTTGCAAAA Sbay.....: GGGCATTTTACATATTTTAAGAGTGTGTATCGAAGAAATGGTATCTTTAGGTATAATTTCGTTTCACTCAGGATCTTCCGGAACCTCGTTCTTTGAAAAATATCAAGAGATTTTGAAAAA consensus: *** ** * ** *** *** ** ** ** ** ** *** ** *** ****** ** ***** * *** * ** * ** ** * ******** * * ** ** 2160~2280: total....: ====== ======= Scer.....: AATTGCTATCAAATGCTCGGTATGTTTTTTTCTTTTATTCTACTTTTACGATTCTTTTTCTTTCTTTCCTTCTTCATAAAAAAGCACTTTCACTAACTGTCTTTGTCAAACATAAATATG Spar.....: AATTGCAATCAAGTGCTCGGTATGTTCTTTT----TATTCTACCTTTACCATTTTTT------CTTTCTTTCTTCATCTAGAAACTTTTTCACTAACCACCCTTGTCAACAATGAGTATG Smik.....: GATTGCAGTCAAGTGCTCAGTATGTTACTTT----TATTC-AGCGATGTCACTTTAT-------TTTCCACCACCTTC--------TTTTTACTAAcagtattt---------------- Sbay.....: AATTGCAACAAAATGCTCGGTATGTTATTTT----AATTGTTCTTGCACTATTTTTT------TTTTCATTTATAGCCA------TTTCTTACTAACCGCTGTCGTCAATGATGAATGCA consensus: ***** ** ***** ******* *** *** * * * * **** * * ****** * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB DDDDD Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >==================================================================================================== 2280~2400: Scer.....: CGATCAATATAGACCGTTGATATCAGTGGTAGAACAATAAGGAAATTGCCCTTGATGTGTCTGTCTGAATACTTCCGGACATTTCCTGTAGACGACGATGAGTTTGTTCTGGCATTAGCT Spar.....: TGATTAATGTAGACTCTCGATATTAGtggtagaacaacaaggaaattacctttgatgtgtctgtccgaatacttccggacatttcctgtagatgacgatgagtttattctggcattagct Smik.....: tgattaa--cagaccctaaatattagcggcaggacaacaagaaaattatctttaatatgcctttctgagtatttccggacatttcctgtggaagcggatgtgtttattgcagcgttagca Sbay.....: TACTCAAATCAGTCCCTTAATATTAGCGGAAGAACTACAAGAAAATTACCATTGATGTGCCTTTCAGAATACTTCCGGACATTTCCTGTAGACCACAATGAGTTCGTCGTGGCATTGGCT consensus: * ** ** * * **** ** ** ** ** * *** ***** * ** ** ** ** ** ** ** ***************** ** *** *** * ** ** ** Spar_spli: D Sbay_spli: DDDDDD known....: ==========>= 2400~2520: Scer.....: ATGTCAGCGCGGAAGCTGAGCGCAGCGCGGAAGTGAcggaggagc--tttttcctttt-----------tttcgcttctttcttttgtctcatactcatgtagca---tactttcgcgaa Spar.....: atgtcagtgcggaagctgggcgcagcgcggaagtaatggaatggccatttttcctttt-----------tttcgcttctttcttttgtctcatcctcatgcagcagcatacttacgcgaa Smik.....: atgtcagcacgaaaacttcgcggtactcataaatga--gaaaggcgatatttccttgt-----------ttcttctgctct-ttttattattgcctagaagagtaagattcttgaggtat Sbay.....: ATGTCTGCACGAAAACTGGGTACTACGCGGAAATAGtgagcgcggtattttaccttttggcctttttattttggtctctttgttttgtctcatactcatgtaaaa---tacttacgcgaa consensus: ***** * ** ** ** * * * ** * * * ** **** * ** ** * **** * ** * * * *** * * Spar_spli: DDDDDD Smik_spli: DDDD 2520~2640: Scer.....: ccctat--tccaacgttttgttgttg-ctcgctttcatgct----taaaa-tttttattatgtatt-ttacgatcaaggtgtatcgtgaaccacacgtttatgaaatcctt---atttta Spar.....: ccctatattccaaagttttgttgttg-ctcgctttcatgct----caaaaatttttactatgtattcttatgatcaacgtatactgtgaaccatacgtttatgaaaccctt---atttta Smik.....: gttcgccccgcagaggtt-gttgtcggctcattttcttgctatttttttttttttttttgggaattttccttattttcatttcttttcgatc-cgtagtcgtggtatcatttccgtttcg Sbay.....: ccctattatccagcgcctcgttgtcgctttgcttttatgct----caaaaatttttattatgtatt-ttatgatcgatgttaaagttatatcgcatgcttctaaaagcttt---acttca consensus: ** * * ***** * * *** **** ***** * * *** * ** * * * * * * * * ** ** Smik_spli: DD 2640~2751: Scer.....: gaatcaaaaagtcctacaatcttgtttgtggagtctatataaagctaaagttaggttctacaaagcaaga-ta--caaatacgaggccatcgagtattca----------- Spar.....: aaatcaaaa-gtcctataaccttgtttgtggaatctacataaagttaaagttaggttctacagagcaaga-ta--caaacacgaggtcatcgagtattca----------- Smik.....: ctgtaataatgtttttcaagttagcactaaggagcttcattatgt---agcctggtcacattaagggctt-ttgtcaagtatgctcttacttagcattgtaatggtttaaa Sbay.....: aggtcataacatcttatagagttgattacagaatcagtgtatatttagagttcaattctacaaggcaaaactactcaagcgcaca.......................... consensus: * * ** * * * * * * * * ** * * * * *** * ** *** Smik_spli: DDDDDD { alias......: ['RPS9B', 'RPS13A', 'SUP46'] chromosome.: 2 description: Ribosomal protein S9B (S13) (rp21) (YS11) end........: 605466 exons......: [(1, 7), (421, 1001)] gene.......: RPS9B introns....: [(8, 420)] length.....: 1001 name.......: YBR189W plength....: 333 start......: 604466 tdist......: 207674 type.......: ORF up.........: 1 } Scer: 2 donors and 1 branches Spar: 4 donors and 2 branches Smik: 3 donors and 2 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 453), ('Spar', 453), ('Smik', 453)] ->[('Spar', 2271), ('Smik', 2271)] ->[('Scer', 65)] ->[('Smik', 2602)] ->[('Spar', 1563)] ->[('Spar', 1881)] ] [ ->[('Scer', 842), ('Spar', 842), ('Smik', 842)] ->[('Spar', 2617), ('Smik', 2626)] ] 0~120: Scer.....: --------------------------------------actggttgtaaaaagtagtcgcaacaagtaagtcgtaaaaaagtagatgtaatggaag-gctttgaaggaacggctagccag Smik.....: attgatttttatagtattcaacagcacagaggttatgattctttttcgaaacgcaggtgaaagaaataaaatgagatgtaatagattttaggttagcgcttcaacagattctcctgaagt Scer_spli: DDDDDD 120~240: Scer.....: cttttctgtatcattcctagcctaattgacagcatcttgaccttctagtatggaaactttcaatttcag----aaagcggtgttccccgctgcgacgatttaatccgtacat-ttacaca Spar.....: ------------------------cctgac--cttctaaatctgcaggttttaattatttcataggaag----acag-gaggttcctcgctgcgacggtataatccgtacat-ttgaaca Smik.....: aatatctataagctgagctgtatatatgctatataataatcttctaaattctgcggcttttggttgcagcgaagaaaagtgattcctcgatcccgaatgtacacccgtacacgttataca consensus: ** * * * *** ** * * **** ** * * * ******* ** *** 240~360: Scer.....: tctgtacatttttcatattcgcaaaacaaaggttacttgaaaaaatcataaagttggcggcttcaggtggacgcgcttcactca--tgtagcttaacattcaatcccattaagcattatg Spar.....: tctgtacattctccaaacccgctaaacataggttacttaaaaaaatcataaaac-ggccgcttcaagtagacgcgctttgtccacatgtagcttgacactcaatctcattaagcattatg Smik.....: tctgtacattctacatatt-gttaatccacggt-acttgataatactccgaagtcg--cacttcagagaaacgcacttcgccaacatgtagtttgacatataatcacactagctaaagtg consensus: ********** * ** * * ** * *** **** * ** * ** * ***** **** *** * ***** ** *** **** ** ** * ** 360~480: Scer.....: cataaatttcatgaagtttacttaataaaattgttcatttgcatagacaagaaagaaagcaacaagacaactaagactaagcaacaATGCCAAGTACGTATTAGA-CTATATCGAAGAGG Spar.....: cttaaatttcatcaagtttatctaacttgattgttcattagcacagaaaagaaagaaagtaacaagacaactaagactaagcaacaatgccaagtacgtattaaaactacatcgaagaag Smik.....: cttaaatatcatctagtttgtttaaagtgtacatttttttaaacaaggaaagagtaaagcaacaagacaactaagtttaagcaacaatgccaagtacgtattaaactccattaggagaag consensus: * ***** **** ***** *** ** ** * * ** * **** *************** ************************** * * * *** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: >========================== 480~600: Scer.....: AGGGAAATTCTTCACTCTGACTCGTTGATTTTGAAAGAGGTTCGGGTCCTCATAAATATTTGAGAATATGAAATTCCA--TAATAGTATACCTTCATTGAGTAGCACGACAACAGCCTGA Spar.....: agggaaattgttcactctgactcgttgatttacaaagaggttcgggtcctcataaatatgtgagaatatgaaattcaaattaaaaaaatacctccattgagtaccacaa--acggcctga Smik.....: tgggaaattctttaatttcgctc-ctaatttacaacgaggttcgggtccttataaatat--gagcatatgaaaactgggataaagacacatttac---gagtaccaccg--ataccatgg consensus: ******** ** * * * *** * **** ** ************** ******** *** ******** *** * * * * ***** *** * * ** known....: ======================================================================================================================== 600~720: Scer.....: ATTACTATCCATATTATGAATATCTTTATTTACACTGAACTCCCGACACTTCAGTTAAACAGGGATACATTAGAGAT-CAAGGTGATCTAATAGGGAA------CATCTCTCTCGTAACA Spar.....: attacttcctgccataagtatatctttatttacactgaactcccgacacttcagttaaacagggatgcattagagaggcaaggtgatctaatacggaa------catctctcacg--att Smik.....: aatacttcctgccttatctatatccttatttacactgaactcccgacacttcagttaaacagggatgtattcgaagaataagctaatcacaagctgaaggcctccttttctttcgtgata consensus: * **** * ** ***** ***************************************** *** ** *** * *** * *** * * *** ** * known....: ======================================================================================================================== 720~840: Scer.....: ATGGGACAGTATTTTATTTTCCAAGGCGGATACCTAATTATGCGTTTTTAATCAT-ATCTCTACAATATTTATGAGCACTTACTTGGG-CCCTTGCAGACTTTTGTTC-CGGGAAAACTT Spar.....: atatgaaggcatttcattttccaatgcagacatctaattatacgttcttaatcat-atctctacaatatttatgagcactttcttgggacccttgcggatttttctttacagggaaactt Smik.....: ttggggaagtatttcgtttctcaaggcggataccagac---gcgtttttagtcatcatatctata-tatttatgagcactctcttggg-cctctgcaaaattctac------ggaaactt consensus: * * * **** *** *** ** ** * * * **** *** **** ** **** * ************** ****** ** *** * ** * * ****** known....: ======================================================================================================================== 840~960: Scer.....: TTGACTAACAAGAAT-CCAATTTTACTTT--TTTTTTTTT---AGGAGCTCCAAGAACTTACTCTAAGACTTACTCTACACCAAAGAGACCTTACGAATCTTCTCGTTTGGACGCAGAAT Spar.....: ttgactaacaagcattccaattttatttt--ttatttttttgtaggagctccaagaacttactctaagacttactctactccaaagagaccttacgaatcttctcgtttggacgctgaat Smik.....: ttgactaacgattat----atttcattttcattttttttttgtaggagctccaagaacttactctaagacttactctaccccaaagagaccttatgaatcttctcgtttggacgctgaat consensus: ********* * ** **** * *** ** ****** ************************************ ************** ******************** **** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB known....: ===========================================>= 960~1080: Scer.....: TGAAGTTGGCCGGTGAATTCGGTTTGAAGAACAAGAGAGAAATTTACAGAATTTCTTTCCAATTGTCTAAAATTCGTCGTGCTGCCAGAGACTTGTTAACTAGAGACGAAAAGGACCCAA Spar.....: tgaagttggccggtgaattcggtttgaagaacaagaaagaaatttacagaatttctttccaattatctaagattcgtcgtgctgctagagacttgttgactagagacgaaaaggacccaa Smik.....: tgaagttggccggtgaattcggtttgaagaacaagaaagaaatctacagaatttctttccaactatctaagattcgtcgtgctgccagagatttgttgaccagagacgaaaaggacccaa consensus: ************************************ ****** ****************** * ***** ************** ***** ***** ** ******************* 1080~1200: Scer.....: AGAGATTGTTCGAAGGTAATGCCTTGATCAGAAGATTGGTTAGAGTTGGTGTCTTGTCCGAAGACAAGAAGAAGTTGGATTATGTTTTGGCTTTGAAGGTTGAAGATTTCTTGGAAAGAA Spar.....: agagattgttcgaaggtaatgccttgatcagaagattggttagagttggtgtcttgtccgaagacaagaagaagttggattatgttttggctttgaaggttgaagatttcttggaaagaa Smik.....: agagattgtttgaaggtaacgccttgatcagaagattggttagagttggtgtcttgtccgaagacaaaaagaagttagattatgttttagctttgaaggtcgaagatttcttggaaagaa consensus: ********** ******** *********************************************** ******** *********** *********** ******************* 1200~1320: Scer.....: GATTGCAAACTCAAGTCTACAAGTTGGGTTTGGCCAAGTCTGTCCACCACGCCAGAGTTTTAATCACTCAAAGACACATTGCTGTTGGTAAGCAAATCGTCAACATCCCATCTTTCATGG Spar.....: gattgcaaactcaagtctacaagttgggtttggccaagtctgtccaccacgcaagagtcttgatcacccaaagacacattgctgttggtaagcaaatcgtcaacattccatctttcATGG Smik.....: gattgcaaactcaagtttacaagttgggtttggctaaatctgttcatcacgctagagtcttgataactcaaagaca............................................ consensus: **************** ***************** ** ***** ** ***** ***** ** ** ** ************************************** ************* 1320~1440: Scer.....: TCAGATTGGACTCTGAAAAGCACATTGACTTCGCTCCAACTTCTCCATTCGGTGGTGCTAGACCAGGTAGAGTTGCTAGAAGAAACGCTGCTAGAAAGGCTGAAGCTTCCGGTGAAGCTG Spar.....: TCAGATTGGACTCTGAAAAGCACATTGACTTCGCTCCAACCTCTCCATTCGGTGGTGCTAGACCAGGTAGAGTTGCTAGAAGAAATGCTGCTAGAAAGGCTGAAGCTTCCGGTGAAGCTG consensus: **************************************** ******************************************** ********************************** 1440~1560: Scer.....: CTGAAGAAGCCGAAGACGAAGAATAAataattcgctgatttcataactgtataataaattttataacttttcaaatcacggatcatttttcattttactttgtcatttttatttcatttg Spar.....: CTGAAGAAGCCGAAGACGAAGAATAAataattcgctgattttataactgtataataatttttataacttttcaaatcacggatcatttttcattttactctttcatgtttatttcatttg Smik.....: ........................................tcataactgtataata-tttttataacttttcaaatcacggatcatttttcattttacttgcttcctttttcctcttatg consensus: ***************************************** ************** ***************************************** * *** ** * ** 1560~1680: Scer.....: aaaatgggtagaggtacataactggcgcttttcttgcaagatgacatggcattggatgacacaagtattactcaatacccaacgtaaatagctagaagattttgatcggatttaaattcc Spar.....: agagtgagtagagctgtctgagcggtacgctctctgcaaaatgc-----tattggatgatacaatcattactcagtatctaatctaagtagctaggagattttggcgaggtttgagatcc Smik.....: gaagtg--tagaatc----------tactctcttgaaagtattg-----ttaggaagagtataattactactaagtattcagcgct--tgacaag--gctcttgttaaagaaaaattcac consensus: * ** **** * * * ** * * * ** * **** * ** * * * ** * * *** * * Spar_spli: DDDDDD 1680~1800: Scer.....: caactgcaactcagtagcgtt-taggattttacaccttggcttggagaaatccttattgtcagaaattgaa-gccgttaatatttaaaggctaattctcca------------------- Spar.....: caagagcaaccttgtagagctatgggattttacgttctgactcgaaaagctcttt--tgtcagaaaaaaagcaccgtttatgttttaaagcgaaatcatcaaggaggtcggctgcttcac Smik.....: cggtaacagcct-----cagtccggagttttg-----------aggagaataattattctc---catgaaatgctattca-gtatttgtgcaaactc----------------------- consensus: * ** * * * **** * ** * ** * * * ** * * * ** ** ** 1800~1920: Scer.....: ----tgccatcttgcattcactttggtatatatctcttgacctcaatatatctcgataatataaatcgcaatattatacttgttagtctgacagttttacacctgtacatcttcaccatc Spar.....: caggtgccgtttaactttaacctctat-taaaccttgtgaccttaacgtatcccaatgatagagattattatattccattcgttcgtctgacagctttacacctgtacatctcggtcatc Smik.....: ----------------tcgaggtcaatatacgtcacgt---------------cagcaacagagattatt-tagcat-ttatttcaacagacagatttacatctgtacatttcactcatc consensus: * * * * ** * * * * * * ** ** * ** * ***** ****** ******** * **** Spar_spli: DDDDDD 1920~2040: Scer.....: accacacccttttttactggaggcaaggatgagtttgaat--atcgcctttttcccagcc--gctagaacatgctcagaaccgaggaaaagcaccgctgccaaa-cctcctttgatgtgt Spar.....: ctgacaccattttg-ataggagaaaaaaatgcttttatattcgccatttctttctaagtgaggtccgaacatgtccacaccggagagaagccatggtcaccgaa-gctcctttgatgtgc Smik.....: ccaacaccattccaaaaacaaaaagtaagcgtgcttctagcgggc-cgcttttcgaagcga-ggccgaacgtgcccacaaccaaaagaagctatactgaccaaaagctcctttgatatgc consensus: ***** ** * * * ** * * **** ** * **** ** ** * * * ** * ** ** ********** ** 2040~2160: Scer.....: tggccca--ccgctactagtggccgtgctggaagcccaggcagcggtgggggccacaatacgagagctggaaaggtaaacggtctctgcgcctctgtgaaattttatcaccaatggagtg Spar.....: tggccca--gtgtagttggtagccctgctgggatcccaacagcaagtagggaccacgatacgagagctagagaggcagacggtctctgcgcttcagtgaaattttgtcatgaacggagca Smik.....: gggcagatggcgaaagcacctttcccactaggattccagc-gacgacgaaactcacgatgcggaaggtggacagacaggtggtctccgcgcctcaatgaatttttgtcattaatggaggt consensus: *** * * * ** * * *** *** ** ** ** * ** ** * ****** **** ** **** **** *** ** **** 2160~2280: Scer.....: tcatgtctggta-aagataatatagaaagtagtgtgcaatttcaggcattaccgattgaactttggaataagagaaccaagacaaaaataactagcaaca-------------------- Spar.....: ttatgtctggtagaaggtaatatagaaggtgcggtgcaattcaaggtattatcgattgaactttggaataagagaaccaagacaaaaataactagcaacaatgggtaaatcgtatgtcat Smik.....: taatgtcttgtagaaggtaatatagaaagcgtagtgaattttcaaatattatcgattaagcattggagcaagaagaccaagacaaaa-taactagcaacaatgggtaaatcgtatgtcat consensus: * ****** *** *** ********** * *** * ** * **** ***** * * ***** **** ************ ************ Spar_spli: DDDDDD Smik_spli: DDDDDD 2280~2400: Spar.....: ttaatcctatgaatctaccgatggactaaacatggtacctcaaacagaacatatcctgatggaagtaaagaaatttgaagaagtgtctggcatgaatagaacaaacgtaccatcagaaca Smik.....: tttatactgtgaaactattgaatagaaaaacatggtacctgaagccgaacatctcctagcagaaatgaagtgggttggattaatgcccagcttgacagtaaaacaaaaatattgttagga 2400~2520: Spar.....: aaaatattaagcgaagtgatgattctccattgatttcgagaaaactgtgcgatatgatggcttttacagggcttcgaacaatttaattagacggtctttgttctgaaattattttagcag Smik.....: caattgtaaagcagacgcgatggaataatagcactctatttattttagaaaacttatgtgatacggtggctttttcaatgtcgtgaaacatgtcctcaaat----------------tta 2520~2640: Spar.....: caggagtgtaatagggaagtagataatcggaaggttcactcttcggacattcagttatgtgttgagtccatgtcaaaaatcgaacaaaacaatagattactaacatgattttttataaat Smik.....: gttgggaagtaggagtgtaataggtg-gaaaatagttgaaataatt-tcctgtggttatttggctatgtgttgaggtt-catgtcagttggatataaataatagaatactaactta--tt Spar_spli: BBBBBBB Smik_spli: DDDDDD BBBBBBB 2640~2708: Spar.....: ctttattttgatttatttccttataatatagacacggttacagatctcgtactcgttac--------- Smik.....: ttggtaaatctttactttgatttactttcttatgatatagacacggttacagatctcgtactcgttac { alias......: ['RPL21A', 'URP1'] chromosome.: 2 description: Ribosomal protein L21A end........: 607098 exons......: [(1, 11), (400, 871)] gene.......: RPL21A introns....: [(12, 399)] length.....: 871 name.......: YBR191W plength....: 290 start......: 606228 tdist......: 206042 type.......: ORF up.........: 1 } Scer: 3 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 772)] ->[('Scer', 976)] ->[('Scer', 1300)] ] [ ->[('Scer', 1106)] ] 0~120: Scer.....: ataattcgctgatttcataactgtataataaattttataacttttcaaatcacggatcatttttcattttactttgtcatttttatttcatttgaaaatgggtagaggtacataactggc consensus: ************************************************************************************************************************ 120~240: Scer.....: gcttttcttgcaagatgacatggcattggatgacacaagtattactcaatacccaacgtaaatagctagaagattttgatcggatttaaattcccaactgcaactcagtagcgtttagga consensus: ************************************************************************************************************************ 240~360: Scer.....: ttttacaccttggcttggagaaatccttattgtcagaaattgaagccgttaatatttaaaggctaattctccatgccatcttgcattcactttggtatatatctcttgacctcaatatat consensus: ************************************************************************************************************************ 360~480: Scer.....: ctcgataatataaatcgcaatattatacttgttagtctgacagttttacacctgtacatcttcaccatcaccacacccttttttactggaggcaaggatgagtttgaatatcgccttttt consensus: ************************************************************************************************************************ 480~600: Scer.....: cccagccgctagaacatgctcagaaccgaggaaaagcaccgctgccaaacctcctttgatgtgttggcccaccgctactagtggccgtgctggaagcccaggcagcggtgggggccacaa consensus: ************************************************************************************************************************ 600~720: Scer.....: tacgagagctggaaaggtaaacggtctctgcgcctctgtgaaattttatcaccaatggagtgtcatgtctggtaaagataatatagaaagtagtgtgcaatttcaggcattaccgattga consensus: ************************************************************************************************************************ 720~840: Scer.....: actttggaataagagaaccaagacaaaaataactagcaacaATGGGTAAATCGTATGTCATTTAATCCTATGAATCTACAGCACGAACGAATCATGGTATCTCAAACCGAACATATCGTC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >=================================================================== 840~960: Scer.....: ACAGAAATAAAAAGATTTAAAGACGTGTCTAGTGTGAATAAAGCAAACATATCATTAGAGCAAAATATTGGGCAGATAAGATGATGCTACACTGATTCTGAGAAAATTACGTGACATGAT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: AGGCTTTTAACGGGCTGTAAGTCATTAGTTTACAGTCGTTGCTTTGAAAATTAGTTCAACATTAGAAGTGTAGTAATTACAAGCCCTTTTTCCAAACATTCGGTTATGTGCTGGGACGCA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: Scer.....: TCTCAGAAACTCGCAAAACAATAGAATACTAACATGATTTCTTATAAATCTTAATTTTGATTTATTTCCTTATAATACAGACACGGTTACAGATCTCGTACTCGTTACATGTTCCAACGT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ==============================================================================>= 1200~1320: Scer.....: GACTTCAGAAAGCATGGTGCCGTCCATCTTTCTACTTACTTGAAGGTCTACAAGGTTGGTGACATTGTCGACATCAAAGCCAATGGTTCTATCCAAAAGGGTATGCCACACAAGTTTTAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1320~1440: Scer.....: CAAGGTAAGACCGGTGTTGTCTACAACGTTACTAAGTCTTCTGTTGGTGTTATCATCAACAAGATGGTCGGTAACAGATATCTAGAAAAAAGATTAAACTTAAGAGTTGAACACATCAAG consensus: ************************************************************************************************************************ 1440~1560: Scer.....: CACTCCAAGTGTAGACAAGAATTTTTGGAAAGAGTTAAGGCCAATGCTGCTAAGCGTGCTGAAGCTAAGGCTCAAGGTGTTGCTGTTCAATTGAAGAGACAACCAGCTCAACCAAGAGAA consensus: ************************************************************************************************************************ 1560~1640: Scer.....: TCCCGTATCGTTTCTACTGAAGGTAACGTTCCTCAAACTTTGGCCCCAGTTCCATACGAAACTTTCATCTAAtttacccg consensus: ******************************************************************************** { alias......: [] chromosome.: 2 description: Hypothetical ORF end........: 680008 exons......: [(1, 11), (109, 502)] gene.......: introns....: [(12, 108)] length.....: 502 name.......: YBR230C plength....: 167 start......: 679507 tdist......: 133132 type.......: ORF up.........: 0 } Scer: 8 donors and 2 branches Spar: 8 donors and 5 branches Smik: 5 donors and 3 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1660), ('Spar', 1652), ('Spar', 1656)] ->[('Scer', 2216), ('Spar', 2216), ('Smik', 2216)] ->[('Scer', 2548), ('Spar', 2548), ('Smik', 2548)] ->[('Scer', 1638), ('Spar', 1638)] ->[('Scer', 2458)] ->[('Scer', 2485)] ->[('Scer', 2568)] ->[('Scer', 3031)] ->[('Smik', 93)] ->[('Smik', 1576)] ->[('Smik', 1779)] ->[('Spar', 11)] ->[('Spar', 1087)] ->[('Spar', 2830)] ] [ ->[('Scer', 1349), ('Spar', 1349), ('Smik', 1349)] ->[('Scer', 2272), ('Spar', 2272), ('Smik', 2272)] ->[('Spar', 1102), ('Smik', 1102)] ->[('Spar', 1679)] ->[('Spar', 2789)] ] 0~120: Scer.....: --acaaatattacatgtattaaataacatgcttt-------tctgctcaaatttttttaaccgccgaggc-ctgcacactttca---ctacgtgtataacgatgc--------tg-caga Spar.....: acaaaggtattgtatgtattaaataacatatcttatatatatatacctaaatatttttaaccgccgaggt-cttcgcacttgct---ctacgtgaacagtgatataaattgtgcg-catg Smik.....: --gcaaatgtgttttcagtttagcacttcattatatatgt-agagtttcatcctttttaaccgccgagatacgacaagcctgctttgccacgtgtatgacgatatagagggtttgtccca consensus: * * * * ** * * * * *************** * * * * * * ***** * *** * * Spar_spli: DDDDDD Smik_spli: DDDDDD 120~240: Scer.....: caa-agtaatggggtgtatgggtgtgggtggcaaaa-aaaacctagcaacgctctatgtttcttttcttttttctttctttttttttttttgccgtttccgatgggccactcggtgaaaa Spar.....: caa-gataatgtagtgtatgggtgtgggtggcaaaa-aata-caagctagtcttca----tcttctttttttttttttttcttttttttttcccgtttccgatgggccactcggtggaaa Smik.....: caacaatcgtaaagtttatgggtgtgggtggcaaaacaataactaatgacgat-------attttcatttctttttttttcattctttttttccgtttccgatggttcactcggtgaaaa consensus: *** * * ** ******************** ** * * * * * ** *** ** *** ** ** ****** ************* ********* *** 240~360: Scer.....: catataaaaagggctct---acattcattttttcatcgatga-gtactttactt-gttatcagat-ttat-tc-attttgtttctacttgttttttttttaaatccccacgaatctcttt Spar.....: catatataaaggactct---acaatc-ttttttcaccgatga-gtagtttgctt-cttttcatatgttgt-ccggttctatttattcttgattctttcttaaatccccacgaatctcttt Smik.....: catataaaaagggctcttgcatttccgatcttacaccgatgacttggtttattcacttcttctatctaacatttattttattt-tacttgttttttttttaaatccccacgaatctcttt consensus: ****** ***** **** * * * ** ** ****** * *** * ** * ** * ** * *** * **** ** *** ********************** 360~480: Scer.....: gccttttggcttagatcaagtgtagtatctgttcttttcagtgtaacaactgaaatgacctcaatgaggctcattaccttttaatttgttacaatacacattttttggcac-ccaaaata Spar.....: gccttttggcttagatcaagtgtagtatctgttcttttcagtgtaacaactgaaatgacctcaatgaggctcattaccttttaatttgttacaatacacattttttggcac-cc-aaata Smik.....: gccttttggcttagatcaagtgtagtatctgttcttttcagtgtaacaactgaaatgacctcaatgaggctcattacc-tttaatttgttacaatacacattttttggcacactcaaata consensus: ****************************************************************************** ******************************** * ***** 480~600: Scer.....: ataaaatggacgggaagagactttttaagcaagttgttttccgctaatgtcaggtctcactactttttgctgctatttttcttcgctcatggtttcttcataaggcgtttttatgatggt Spar.....: ataaaatggacgggaagggactttccaagcgggctgttttccgctaatgtcaggtctcactccttttt-ccgtta-ttttcttcgcttatggtttcttcatagggcgtttttatgatggt Smik.....: at-aaatgaatggaaagagattttttaagcgagctgtttcctgctaatgtcaagcttcagtactctatgctgctattttccttcgcttatggtttcttcatagggcgtttctatgatggt consensus: ** ***** * ** *** ** *** **** * ***** * ********** * *** * ** * * * * ** *** ******* ************** ******* ********* 600~720: Scer.....: ttttcgaaattggtttttgagacgacggttgctcaaggttattgtttttgttttcttctggttgttttctatt---ttcttttttttagctttctgtttctcccttagtttggctttttg Spar.....: ttttcgaaattggtttttgagacggtggcggcttaaggttattgctttcgtttttctccagttgttttctatttgctttcttttttttgctttctgttt-tctctaagcctgggttttcg Smik.....: ttct-gaaattggtttttgggatggtggtgacgtgtggttattgtttccatttt--tccggttgttttctattt--ttttctttttttgccttctgt---actttca--ctgtgtttttg consensus: ** * ************** ** * ** * ******** ** **** ** ************* ** ****** ** ****** * * * ** **** * 720~840: Scer.....: cttcatactcttccctgtctttccgagccgtttatgtccaacgcgggatttggtttttctttatcgatgggaagaaatggtgctatagtaggtt-gggagataatatttatggtat--gg Spar.....: ctccacgatcttccctgtctttccgggctgtttatgttaaaagtggaatttggtttttcttta---atgggga-aagttgtactataatagacg-aggagatgacatttatagtaa--gg Smik.....: c--cgcactcttccctgtcttaccggactgtttatattccaagtggattttgttttttcttttttaatggggagacgctgtgttacaatatttgagggaggaaacatgtgtggtaagcgc consensus: * * ************* *** * ****** * * * ** **** ********* ***** * * ** ** * ** **** * ** * * *** * 840~960: Scer.....: ggtgctagtgcggatggggcgctcttattgttgatttcttcgctcgtcttctttttctggtggcgctgcaagaggaagtttttcgactttgttatgatttttggtttgcaaggaaaggtg Spar.....: ggcgctagtgtggatgaatcgctctggttgtggctctcttcacttgtctttttcttccagcggtgctgcactgggaagtttttcgatcttgtttcgatttttggtttgcaagagaaagtg Smik.....: gacgcctgtatggacaagatgcgcaggttgtggttctttacacgcatttccttcttctgg-ggtgctgcggaggggagttttctgacttcgttatggtttttggtttgcaggaaaaagtg consensus: * ** ** *** ** * **** * * * * * * * * ** *** * ** ***** ** ****** ** * *** * ************* * ** *** 960~1080: Scer.....: tcttacgattctttttttgatgtaataggataagcttgcttatcccccaagtatcggccaaagttgttgattttccttttgaagtgtcctcgg--tttgagggggtgtagggtggggttg Spar.....: tcttttgattctttttttgatgtaataggatgagcttgcttatcccccaagaatcggccaacgttgttaatattccttttgcaatgccctggg-ttttgagggagtgtagggtggagtgg Smik.....: ttttttgatacttttcttgatgtaataggataagcttgcttatctcccaaaaatcggccgatgttgctacatttccttttgtagtctcccgggtggcggagaaagtgt-gtgtgaagtta consensus: * ** *** ***** *************** ************ ***** ******* * **** * ********* * * ** ** *** **** * *** ** 1080~1200: Scer.....: gtctacaataagagtgttccattgttaacgtgctggcgtcttttactatat-tttttttcccagtttattttgtgcttattttctcattgaggagaaggagctcttctcgcaggatataa Spar.....: gttcgcggtaagtgtgtttcattgctaacgtactggtgcctttcttattat-attttttcccagtttattttgtac-tgttttctcat--aggggaaaaagctttt-tcgcgggatataa Smik.....: atc-gcgaaaggtgcgtcgagttgctaacgtactagcgtttgttttactacatttttttccttgtttatttagcgc-tgttttcccat-agatggaaggagctttttctgcgggatatga consensus: * * * * * ** *** ****** ** * * * * ** ******** ******** * * * ***** *** *** **** ** ** ****** * Spar_spli: DDDDDD BBBBBBB Smik_spli: BBBBBBB 1200~1320: Scer.....: a-----tggaggtttgctaaaggggaggagatgtgtttgtgagaatactgctgagagagttctggaagaga-aaaaaaggaggcaatggaaggcgtttgctgggaaaagagaagagccat Spar.....: atgtattgcaggtttgctaaaggggaagagagggatc--tgagagcactgctgagagagttctgaaagagagaaagaaggaagcgaaggaaggcgcttgctgggaagaggcgagagcaat Smik.....: atgca-tgcaggtttgctaaaggggaggagaggtgt--gtgagagtactgc---gagagctatggaaggg--aaagaaggaggcgagtggaggcgttcgctgggaaagaccgggaacaat consensus: * ** ***************** **** * * ***** ***** ***** * ** *** * *** ***** ** * * ***** * ******** ** * ** 1320~1440: Scer.....: gactgcatctgttgtttcaaggccagttttattaaccgcctatgtcatagaggcgttttttttggagggatttgaagaatg-ccggcggcatcaagaaacggacttgatggttgac-gcc Spar.....: aactgcttccattgtttcaaggccaattttactaaccagttttgtcatagaagcgttcttttttggagggattgaagaatg--cggcggaatgaggaaa-ggacttgatggttgacggtc Smik.....: gactgtcgctattgcttcaaggccgattttactaaccaccaatgtcatagaggcgtttcttttggagagatttggaggatgcccggctgcactgaggaggaggtctgatgggtaacggca consensus: **** * *** ********* ***** ***** ********* ***** **** * * *** ** *** **** * * * * * ****** * ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 1440~1560: Scer.....: tgtttttaaagttagagacgtcgcgaccctcgcacttgtggagtcgttcttgacttttacttt-ggtcgcttgatgtttctctcgtcttcccgttcgctcttttat--ttttttattttt Spar.....: tgtttctaaagttagagacgtcgcgatcctcgcacttgtggagtcgttctcggcttttactttcggttgcttgatgtttctcttgtcttcccgttcgcccttttattattttttttattt Smik.....: cgttttcaaagtcagggatgtcgcaatcctcgcacttgtaacgtcattactgactgttactttcggttgcttgacgttcctctggtctttccgttcgcccttttt--atttattattttt consensus: **** ***** ** ** ***** * ************ *** ** * ** ******* *** ****** *** **** ***** ******** ***** *** ** * *** 1560~1680: Scer.....: tttttcctttgacttcgcatgaatgagttcattcatgaagcgaaaggagagattctatataccacgcaacc-aaatatgtaagtatataaa---atatatgtatgtg--------tgtgc Spar.....: tttttcctttgactttgcatgaatgagttcattcataaagcaaaag--gagattctatgtactgcgcattcaaaatatgtatgtatataaatgtatgtatgtgtgtgtgtgtgtttgtgt Smik.....: ttttt-ctttgactttgtatgaatgagttcattcataaagtaaaag--aagtttctatgtattttacatccaacctatataagtataa------gtg---gta------------tatac consensus: ***** ********* * ****************** *** **** ** ****** ** ** * * *** ** ***** * ** * * Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD DDDDDDDDDD B Smik_spli: DDDDDD 1680~1800: Scer.....: actaattggcggcatactctttcttgacccgttgtgatagggccttagctgcttcccattgcctgtcccgagtccagcgactcaagacgttggacgtgcgcacgtactcacacatggccg Spar.....: actaatttgtagcatgctctttcctggcccgttgtgatagagctttagctgcttcccattgtctgtcacgagtccattgactcaacacggtggacgtacgcacgtacccacacatggccg Smik.....: attagttagcagcgtggtccttcctgagccgttgagacagagctttggctgcttcccattgcccgtcgtgggtccagcgacccacgatgttggatgtacgcatgtactcgcacatggccg consensus: * ** ** * ** * ** *** ** ****** ** ** ** ** ************** * *** * ***** *** ** * * **** ** **** **** * ********** Spar_spli: BBBBBB Smik_spli: DDDDDD 1800~1920: Scer.....: aattggcccttacgaatgagctcttggctacccctcttgctgcactcgccacacaccataactggtataattcgtttctcatgctagtctctttttttttttttacttgtttccttttcc Spar.....: aattggcccttgcgaatgagttcctaactactcctcttgctgcactcgccacacaccataactggtataatccgtttctcatcctaatctttttttcc-------cctgttctctattcc Smik.....: aattagcccttgcaactgagcacctggccacttctcttgctgcactcgctacacaccataaccgatacaatccgtttctcattttagtctttaattcc-------cttgttctatattct consensus: **** ****** * * **** * * * ** **************** ************ * ** *** ********** ** *** * ** * **** * *** 1920~2040: Scer.....: tttgttgcttatccgctttctcgttctctcc-tctgt-------tcttgcctcaactcctcaaatctctgctgtcccact---tacgttttatt-ttttcaccgtcccctttccctgccc Spar.....: tttgttgcttatctgccctctcgttctctccttctgt-------ttttgcctcaactcctcaaatctctactatcccacttactacgttttatt-tttttaccgtccccttcccctgcct Smik.....: tatgttctttattcgcactctcgttctctccctctcttctcgcctctcgcctcaactccttaaacctctactatcccact---tgcttttttttcctttcactgtccccttcccctgcct consensus: * **** **** ** ************* *** * * * ************ *** **** ** ******* * * **** ** *** ** ******** ******* 2040~2160: Scer.....: tactaccccgggccagcggccaatgacgccgccgctacctcctctcccgttaatcgtccctgcgtatataaagtgtcgatcaatgtgcccacttcaaccgaaaccgccgacgtaacccta Spar.....: tactaccccgggccagcggccaatgacgccgccgctacctcctctcccgttaatcgtccctgcgtatataaactgtcgatcaatgtgcccacttcaaccgaaaccgccgacgtgcctctt Smik.....: taccaccccgggccagcggccaatgacgccgccgctacctcctctcctgttaatcgtccctgcgtatataaactgtcgatcaatgtgcccacttaatccgaaaccgccgaagtggctct- consensus: *** ******************************************* ************************ ********************* * ************* ** * ** 2160~2280: Scer.....: ttccaacaattagaaacataacatctacctccagcatctcataatATGTCTGCAACGTATGTACACTAATATCTGAAACGTATCGCCTAATCTTTTCTCCCGGTTCTCTTTTGACTAACG Spar.....: ttcgaataattacaaacaaaacatatccatccagcatcgtataacatgtctgcaacgtatgtgcactaatatcggaaacgtttcccccaaccttttctgcctgtt-tcgtttgactaaca Smik.....: -tccaacaaatacaaacacaccatctccctccagcatcgtataacatgtctgcaacgtatgtacaatcatatctgaaacgtacgcaccaactttttctcgcgatt-ttctttgactaacg consensus: ** ** ** ** ***** * *** * * ********* **** ***************** ** * ***** ******* * ** ****** * ** * ********** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB known....: >=============================================================== 2280~2400: Scer.....: TATATCATCTATGACCATCTTTCTTTTCCCCAGTGCTAAACACGACAGTAACGCTAGCCCAAATTCTGACTCTGAAGACGGTCACCACCACAACAATAAGAAGGAATGCGCTATCGAATA Spar.....: tatatcgtctATGACCATCTTTCTTTTCGCCAGTGCTAAACACGACAATAACGCTAGCCCAAATGCCAACTTTGACGACGGTCATCACCACAACAACAAGAAGGAATGCGCCATTGAACA Smik.....: --tattatccATGACCATCCTGCTTTTTCCCAGTGCTAAACACGACAACAACGCTAGCCCAAGATCCAATTCTGAGGACGGTCACCACCATAATAACAAAAAGGAATGTGCTATCGAGCA consensus: *** ** ********* * ***** ****************** ************* * * * *** ******** ***** ** ** ** ******** ** ** ** * known....: ===============================>= 2400~2520: Scer.....: TCTGAAGGCACGGTTAAATAGTGCATCAGCAGTCGCTTGCGGCTACCTCCAAGCTTTTGTCAGTAAGACGCAAGACTTTGCCAAAGTATGCTTTTTAGAACTTCAGAATCCCGTTGTCTT Spar.....: TCTGAAGGCACAGTTAAATAGCGCATCTGCAGTCGCTTGGGGTTACCTCCAAGCTTTTGTCAATAAGACGCAAGACGTGGCTAAGGTCTGCCTTCTAGAACTGCAAAATCCCGTTGTCTT Smik.....: TCTGAAGGCACAGTTAAACAGCGCATCTGCAGTCGCTTGGGGCTACCTTCAAGCTTTGGTAAATAAGACGCAAGACGTGGCCAAAGTGTGTCTTCTGGAATTGCAAAACCCAGTCGTCCT consensus: *********** ****** ** ***** *********** ** ***** ******** ** * ************* * ** ** ** ** ** * *** * ** ** ** ** *** * Scer_spli: DDDDDD DDDDDD 2520~2640: Scer.....: GGTCAACTTGTTGCTGCATTCTTCAGTGGTATGTTATTTATGTAACGGGTATGCGAACCACAACGCCAGATTCTTGAAGGGGAAACCTAACTCTACAGTCTTAGCAACAACCGCCGGCGC Spar.....: GGTCAACTTATTGCTGCACTCTTCAGTGGTATGTTATTTATGTAACGGGTACGCAAACCACAACGTGAGATTCTTGAAGGGAAAACCTAACTCCACAGTCTTAGCGACAACCGCCGGCGC Smik.....: AGTTAACTTATTGTTACACTCTTCAGTGGTATGTTATCTATGTAACGGCTACGCAAATCACAATGTGAGGTTTTTGAAAGGAAAGCCCAACTCTACTGTTTTAGCAACAACCGCCGGTGC consensus: ** ***** *** * ** ****************** ********** ** ** ** ***** * ** ** ***** ** ** ** ***** ** ** ***** *********** ** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2640~2760: Scer.....: TCTGGGTCTTTTGACGCTGGACGGTATAATTTCAAAGAAATACTACTCCAGATACGACAAGAAATAAtaacatactatttaataacatcctttcacacactcacacactcaca---cact Spar.....: TCTGGGTCTTTTGACGCTGGACGGCATAATTTCAAAGAAGTACTACTCCAGATTCGACAAGAAATAAtgacaaactatttaataataataacatccttccacacacaatcacataccact Smik.....: TTTGGGTCTTTTAACGCTTGACGGTATAATCTCAAAGAAGTACTATTCCAAGTTCGACAAGAAATAAtaataaactatttaataatatccatccacactcactcacatact-----cagc consensus: * ********** ***** ***** ***** ******** ***** **** * ************** * * ************ * * * * **** * ** 2760~2880: Scer.....: ttatatacatatatttttataactattactgctgatttatttgtaaggaaacgtgctttcctcttcatcggtcaagtgataagtttctataatataatagcttttctgtctactatcatt Spar.....: ttatatacatatgtttttataactactactgctaactta-ttgcaaggaaat-tgttttccttttca-cggttaagtgatatgtctttgttatataacag-ttttctgtctttcatc--- Smik.....: ctatatacatat--ttttataatcattactgctaaatct-ttacagggaaggatgttttcctcttcaccgatgatccaatatggtccttca------------ttctttctaatatc--- consensus: *********** ******** * ******* * * ** * **** ** ****** **** ** * * *** * * **** *** *** Spar_spli: BBBBBBB DDDDDD 2880~3000: Scer.....: cttttttcatttcaagtacccttaatttgttttacccggaccacgacattttctcactacggcacttgagagctataactca-atgaacatgttgctt-ggagttatttgattgctctgc Spar.....: --cttttcttttcaagtaccctaatttatttttacccgcactgcaacattttcgtactacgtaattagaaagttataactcagaggatcatatggcttgggggtgatctgattattttgc Smik.....: -----------------acccttctttcattttacccgggtcacgatttttctgcactacgtaatttgactgttataactcatagg---acatggctt-gaggtgattcactttctttac consensus: ***** ** ********* * * *** ****** * * ** * ********* * * * * **** * ** ** ** * * * 3000~3040: Scer.....: gtatcttaaaatagcggtctcgaatc-aaccgtatgcaac Spar.....: atctctcaaaataatgatctttaacc-aatcgcattcagt Smik.....: ggcttttcaagtagctttctccaaccaaaacgcaacgagc consensus: * * ** ** *** ** * ** ** * * Scer_spli: DDDDDD { alias......: [] chromosome.: 2 description: Hypothetical ORF identified by homology. See FEBS Letters [2000] 487:31-36. end........: 727032 exons......: [(1, 64), (156, 457)] gene.......: introns....: [(65, 155)] length.....: 457 name.......: YBR255C-A plength....: 152 start......: 726576 tdist......: 86108 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 2 donors and 2 branches Smik: 2 donors and 2 branches Sbay: 1 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 397), ('Spar', 397), ('Smik', 397), ('Sbay', 397)] ->[('Spar', 602), ('Smik', 602)] ] [ ->[('Scer', 383), ('Spar', 383), ('Smik', 383), ('Sbay', 383)] ->[('Spar', 454), ('Smik', 454), ('Sbay', 454)] ->[('Sbay', 318)] ->[('Scer', 469)] ] 0~120: Scer.....: ataaaaaattcgtcataaataggtttcataaacgcatttttgaagtg--atctct-ccatctgctgcaaaaatagtcttgtaaatgtgtgataatgatgagattaga--acttggtactg Spar.....: --gaaaaaaaattcatagatagattttgtaaacgtaatttggaagtt--atctgt-tgattctctccgaaattcatctcccaaatatataactatggcaagattatatcacttgagactg Smik.....: --taatcttctctcgtaaggagattccgtaaatagtttcaagaagct--ctttctgttgattaatttgggcggcgccctccaaccatataacactgacaagaccgtattacttagagcgg Sbay.....: ----agattttcaactaaatacacactgtaaaaaccattgacaaatttatcttctgcgaattgcgttggagattacctttcggctgcacattaccggtaatacgagactacgtaggacgg consensus: * ** * **** * ** * * * * * * * ** * * * 120~240: Scer.....: -t-------agctaaggtacttaggca--acttctcttcattatgtattaccatg-ttctgttggttcacgtgacatgcaaaggtataactttttccgtacaaattattctctccacctt Spar.....: -t-------taattgagtacctatgcaacacttctctcaattgtgttttaccatatttctattgattcacgtgac---ccaaggttccacttttttcattcacaatattttccccacctt Smik.....: -cttttacgagcgaaagtactgatgtt--acttgtcttgactgtgt-ttaccatgtttctattgttacacgtgacac-taaaggtt---cttttttcgtttacaatattctctccacctt Sbay.....: attccagccgacgataccacttatgtg--acatctcttgattgagttccgttat--ttc------ttcacgtgacgtcttttgattcaagtttttcagcgctatcagctctccac-tttt consensus: ** * * ** * *** * * ** ** *** * ******** * * ***** * ** * ** 240~360: Scer.....: ttttgtgttgttgtgaaagaactttccaa-t--tattgccac-tgtaaccaaccgtccctaaataccaacgacacaaaaactgctg---ctactATGGGTGGTAACGTTCTCCCCATTCA Spar.....: ttttacgccagtgtgaaagcacttttaaagt--cactaccac-tgtaaccagctgtccctaaata-caacaacacagaaacc---g---ctatcatgggtagtaacgttctccccattca Smik.....: ttttgtatcggttagaaaggacttttgaagtactactaccacttgtaatccactgcccgtgaata-caacaacacagaaact---a---taaacatgggtggtaacgttctccccattca Sbay.....: ttttatgccggtataaagggaatcttaaaatg-aatagctac-tatggtcgactatcggtaagca-gaacgacataaaaactaacgaataaatcatgggtggtaacgtgcttcccattca consensus: **** * ** * * * * ** * * * ** * * * * * * * * *** *** * **** * ****** ******* ** ******** Sbay_spli: BBBBBBB 360~480: total....: ======= ====== Scer.....: TTATGACCCCAAAACTGTTAAACAATTAACTAAAGAAGTATGTAAAATTCAAGAATATATCTGGCCCTGTCTTGTTCACCCCA---GAATAAATCGCTAACACAAGTCTAATTAACCTTC Spar.....: ttatgaccccaaaactgttaaacaactaactaaagaagtatgtaaaaattt---acttatccatccctctcttgttcaccacg---gaatacattgctaacaaaagtttatttcactttc Smik.....: ttatgaccccaaaactgttaaacaactaactaaagaagtatgtaaaatttct--gcttttcaactgttttcttgcccactaaagaggaatacattgctaacacgactatctttggctttc Sbay.....: ttatgatcctaaaaccgtcaaacaactaacgaaggaagtatgtaaagagttt--ggttttcaaccgccatcttgcctatcgaa---gaatgcattgctaacaaagttttatttttctctc consensus: ****** ** ***** ** ****** **** ** ************ * ** ***** * **** ** ******* * * ** * ** Scer_spli: BBBBBBB DDDDDD BBBBBBB Spar_spli: BBBBBBB DDDDDD BBBBBBB Smik_spli: BBBBBBB DDDDDD BBBBBBB Sbay_spli: BBBBBBB DDDDDD BBBBBBB known....: >================================================================================= 480~600: Scer.....: TTTCTCATTCGTAGATTACTGTTGCATCATGTATAGGAGCTGCCCAAGGTGCTCTCTTCAGTATTGCCTCAGCGCTGCTGTTGAGAAGATTTTCATCAGTATATAGAAATGTCAGAACTC Spar.....: tttctcatccgtagattacagttgcatcatgtataggagctgctcaaggtgccctcttcagtattgctactgcgctgctgttgagaagattttcatcggtatataaaaatgtcagaactc Smik.....: ttt-tcttacgtagattacagttgcatcatgtgttggagctgcccaaggtgctctattcagtattgctacggcactactgttaagaagattttcctcagtatataagaatgtcagaactc Sbay.....: ttc-----tcgtagattacagttgcatcatgtgtaggagctgctcagggtgccctattaagtattagcacagcactgctgctaagaagattttctttagtatatagaaacgtcagaactc consensus: ** ********** ************ * ******** ** ***** ** ** ****** * ** ** *** * *********** * ******* ** ********** known....: ==========>= 600~720: Scer.....: AAGTGCGTGTTTTTTATCATTGTTCTTGGATTTCAATGGGTGCTGTCTTCAGAGCTGATAAGCAATTGCTCAAGTTCCAGACAAATTATTATCGTGAGGAACAGAAAAGAAGAGAAAAGA Spar.....: aagtacgtgttttttatcactgttcttggatttcgATGGGTGCTGTTTTCAGAGCAGATAAGCAATTGCTTAAATTCCAGACAAATTATTATCGAGAGGAACAGAAAAGAAGAGAAAAGA Smik.....: aagtacgtgtgttttatcattgttcttggatttcgATGGGTGCTGTTTTCAGAGCTGATAAGCAGTTACTCAAATTTCAGACTAATTACTATCGAGAGGAACAGAAGAGAAGAGAAAAGA Sbay.....: aagtacgcgtattttaccattgttcttggatctctATGGGTGCTGTTTTCAGAGCTGATAAGCAGTTGGTTAAATTTCAAACGAATTATTATCGTGAGGAACAGAAAAGAAGAGAAAAAA consensus: **** ** ** ***** ** *********** ** *********** ******** ******** ** * ** ** ** ** ***** ***** *********** *********** * Spar_spli: DDDDDD Smik_spli: DDDDDD 720~840: Scer.....: TTATGGATGAAGCTGCTGAGAGAGGCCTTTTTCTGGAGGATGAGAGTTTGAACTCTTCCCGGTCAACTACATG-Aaagttattttcatgtctac---------ttatatattcata--ta Spar.....: TTTTGGATGAAGCTGCAGAGAGAGGCCTGTTTCTGGAAGATGAGAGTTTGAACTCTTCTCGGTCAACCACATGAaaagctattttcatgtctac---------ttatatattcatatgta Smik.....: TTTTGGATGAGGCTGCAGAAAGAGGCTTGTTTCTGGAAGACGAGAATTTGAACTCTTCTCGATCAACCACATGAagcatta-cttcgtgtgcac---------ttatacattcatacata Sbay.....: TTTTAGACGAGGCTGCCGACAGAGGTTTGTTTTTGGAAGACGACAGTTTGAGTTCTTCTAGATCAACCACATGAagagctagtttaatgtgcactttgtgtatttaaatattcataaata consensus: ** * ** ** ***** ** ***** * *** **** ** ** * ***** ***** * ***** ***** * ** ** *** ** *** * ******* ** 840~886: Scer.....: tcagtgcagatgg-tttatttctataaataca--tagacccgcaaa Spar.....: tcatcgcagatgg-attctctctataaatata--tcaatccataac Smik.....: tcaccgcggatag-tttattcctatatatatatttaaattaataag Sbay.....: tcatcgcggacagttttattcctataaatacttat-aatccgtaat consensus: *** ** ** * ** * ***** *** * * ** { alias......: ['RIM1'] chromosome.: 3 description: Single-stranded zinc finger DNA-binding protein end........: 173432 exons......: [(1, 242), (326, 491)] gene.......: RIM1 introns....: [(243, 325)] length.....: 491 name.......: YCR028C-A plength....: 163 start......: 172942 tdist......: 141907 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 1 donors and 2 branches Smik: 3 donors and 2 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 687), ('Spar', 687), ('Smik', 687), ('Sbay', 687)] ->[('Sbay', 1135)] ->[('Smik', 813)] ->[('Smik', 1325)] ] [ ->[('Scer', 742), ('Spar', 742), ('Smik', 742), ('Sbay', 742)] ->[('Scer', 801), ('Spar', 801), ('Smik', 801)] ] 0~120: Scer.....: -----tatttctgctatgcttctatttttcaatattaattgttc---ttttgtttgctaatccataatttatggaggtggcgccgctaaatcatattt---tccttttgaaa-------- Spar.....: -----tatttctggtaa--gcttctatttcaatataaatcgttc---tttcgtttgccgatccatagtatatggaagtagcgccgctggttcatactt---tcctttagaaa-------- Smik.....: -----tattttttgttatgcctttttttacagtataaattgttctcctttagtttgctgacccatattatacggaagtagcgtcgcaaatttaaattt---tctttaaaaga--ttttgg Sbay.....: gataacggtttcagtattcttattttcctcagcacctcttcttc---ctccgtttaccaacctatgccatgcggtaactgcggcgacaatacctatttttctctttcagaaagtttttga consensus: ** * * * ** * * *** * **** * * * ** * ** *** ** * ** ** ** * * 120~240: Scer.....: ----cctttgttt-aagacttacgtagaactacacttatgtactataatgttctgtaaagattctgtattttcgttcttttctattcc----------atttttcggacttttaggactt Spar.....: ---ccctctgttttaaaa-ttacatagaactacacttatgtactataatgttctgcaaagattctgtattttgctccttttctatttccactattcagatttttcagacttttcaaactt Smik.....: ggcccttctatttaaagacttacatataactatacttatgtactataatggtttgtaaagatcctgtatttaccttgtttt-----------------gttatttctacgtttaaaacct Sbay.....: agcacttctatatcaagacttacataaaactatacttatgtactataatgttttcccaagactctatattttctttgctgtt----------------gctattcttattatagttgcct consensus: * * * * * ** * **** ** ***** ***************** * * **** ** ***** * * * * ** * * * * 240~360: Scer.....: ttcatctaat--acttatta----tttgtggaggag-tgcttaaaaggcgtttgcgcccagacgaaaaaa---aaa----aagctaacacagtagttgagaaagacaaataccacgaatt Spar.....: ttcatttactccatttaatagttattatttgcggag-tgcctgaaaggcgtttgtgcccgaacggaaaaa---aaaataaaagctaacacagaggtggtgaaagacaaatactgcttatt Smik.....: ttcacctgctccatttaatag---ttatctgaggagctgtgtgaagggtgttctcgcgcaaacggaaaaa---aaatcagaagtgaacacagaagtggtggaagacctacacgattcatt Sbay.....: cactcatcttctgcttatta------ttctcaagacaagtttgaaaggcgttttcgcggaaacggaaaaaaacaaaacaaaaggtaacacag---tggagaaagacaaagaccactaata consensus: * * * *** ** ** * * ** ** *** ** *** ***** *** *** ******* * * * ***** * ** ** 360~480: Scer.....: t---gataacaagtcatttgct-aattgtgtgt--ccttgacaaatacaaaacaaacaaaaatccactaatccattgt------aATGTTTTTACGTACTCAAGCTCGTTTCTTCCATGC Spar.....: t---gataacagactattcgcttaactgtgtgt--ccttgacaaatacaaaacaagc--aaactca-taacccattgt------aATGTTTTTACGTACTCAAGCTCGTTTCTTACATGC Smik.....: tcaaaaaaacagaatactc-ctcaatcgtgttt--c--tgataaatataaaaccact-aaaactcaccaacttactat------cATGTTTTTACGTACCCAAGCTCGTTTCTTTCACGC Sbay.....: a---gataacaaggtattcattaattggtgtctgcccttaataaaacgaaagcacatcaatacaccaaatcccgttatttaaaatATGTTTTTACGTACTCAAACACGTTTCTTCCACGC consensus: * **** * * * * **** * * * * *** *** * * * * * * * ************** *** * ******** ** ** 480~600: Scer.....: TACTACCAAGAAGATGGACTTCTCGAAAATGTCCATCGTCGGCCGCATTGGCTCTGAATTCACTGAACATACTTCTGCTAATAACAATCGTTATTTGAAATATAGTATCGCTTCGCAACC Spar.....: TACTACCAAGAAGATGGACTTCTCCAAAATGTCCATCGTCGGCCGCATTGGCTCCGAATTCACTGAACATACTTCCGCTAACAACAATCGTTATTTGAAATATAGTATCGCTTCGCAACC Smik.....: TACTACCAAGAAGATGGACTTCTCCAAAATGTCCATCGTTGGCCGTATAGGTTCCGAATTCACTGAGCATACTTCTGCAAACAATAATCGTTATTTGAAGTATAGTATTGCTTCACAGCC Sbay.....: TACCGCCAAGAAGATGGACTTCTCCAAAATGTCCATCGTCGGCCGTATTGGTTCTGAATTTGCTGAACATACCTCTGCCAACAACAATCGTTACTTGAAGTACAGTATTGCTTCTCAGCC consensus: *** ******************* ************** ***** ** ** ** ***** **** ***** ** ** ** ** ******** ***** ** ***** ***** ** ** 600~720: total....: ====== Scer.....: AAGAAGAGATGGCCAAACCAATTGGTATAATATCACCGTTTTCAATGAACCTCAAATCAATTTTTTGACAGAATATGTTAGAAAAGGGTATGTTATTTATTCTTCAATTTTACT---TAC Spar.....: AAGAAGGGACGGCCAAACCAATTGGTACAACATCACTGTGTTCAATGAACCTCAAATCAATTTTTTGACGGAATATGTTAGAAAAGGGTATGTCATATATTTATCAATTTTACT---TAC Smik.....: AAGAAGAGATGGTCAAACCAATTGGTACAATGTTACTGTGTTTAACGAACCACAAATCAATTTTTTGACCGAATACGTTAGAAAAGGGTATGT----TGTTTTTTTATTTTTTT---TAT Sbay.....: AAGAAGGGACGGCCAAACCAATTGGTACAATATTACCGTGTTCAATGAACCACAAATTAATTTCTTGACAGAATATGTCAGAAAAGGGTATGTATTTTTTTTTGCTATCTTTATGGCTGT consensus: ****** ** ** ************** ** * ** ** ** ** ***** ***** ***** ***** ***** ** ************** * ** ** ** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >================================ 720~840: total....: ======= Scer.....: TTTACAATTACGCGTTATAATTTACTAACATT-TCCTTTCCATAATTTATTCAGCGCTTTGGTATATGTTGAAGCAGATGCTGCTAACTATGTCTTCGAGAGAGACGACGGTTCTAAGGG Spar.....: TTTACAATAAcacattgcaatttactaacatt-tcctttgcataatttatccagcgctttggtatatgttgaagctgacgctgctaactatgtcttcgaaagggacgacggttccaaggg Smik.....: TTTAC-CTTGCAGATTGCAATTTACTAACATC-TATTCAACATAATCTATTTAGCGCTTTAGTATATGTTGAAGCCGACGCTGCTAACTATGTGTATGAAAGAGATGACGGTTCCAAGGG Sbay.....: GTGAcacacgcacattacggtttactaacattattattttaataatttattcagtgctttagtttatgttgaagctgacgccgctaactacatctacgaaagagatgacggttccaaggc consensus: * ** * ** *********** * * ***** *** ** ***** ** *********** ** ** ******** * * ** ** ** ******** **** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB BBBBBBB Smik_spli: BBBBBBB BBBBBBB DDDDDD Sbay_spli: BBBBBBB known....: ====================================================>= 840~960: Scer.....: TACTACTTTGAGCTTAGTTCAAAAGGACATTAATTTATTGAAGAATGGGAAGAAATTAGAAGATG---CTGAGGGCCAAGAAAATGCTGCTTCTTCAGAATAAttgtaatatttacgctt Spar.....: tactactttgagtttagttcaaaaggacattaatttattaaagaatgggaagaaaatagaagatg---ctgagggtcaagaaaatgctgcttcttcagaatgattgtaatatttacgctt Smik.....: CACTACCTTGAGTTTAGTTCAAAAGGATATTAATTTATTGAGGAATGGGAAGAAAATAGAGGATG---CTGAGGACCAGGAAAACACACAATCTTCAGAGTAAttataatatctgtacta Sbay.....: caccactttgagtttagtccaaaaagatatcaacgtattgagaaacggaaagaaaccagaggatgctactgagggccatgaagatgctgcaccttctgaataactgtaatatttatgcta consensus: ** ** ***** ***** ***** ** ** ** **** * ** ** ****** *** **** ****** ** *** * * **** ** * * * ****** * ** 960~1080: Scer.....: gcttatttcgac-tcttcctcga-tattttttatctagagcatgctttcttttacttaaaata-tttatggcaaataggaaaaatacatt-tggaataacgaa-ctagttatgtaa---- Spar.....: gcttatttcgacttcctcctcgatatttttttattcaaaacatgctttcttttacttagagta-tttatggcaaataaaaaaaacacatt-tggaataacgaa-ttagttacacaaa--- Smik.....: gcttctctcgacctttttctca--ttttttctctttgaagaatactttcttttacctagaatattttttggcagttaagaaaaaaacatt-tgtaataactaa-ttagttacataaatat Sbay.....: gcttatctcga---------------gttttcttttagagcacgctctcttttacttataatattttatggcaattaggaacaacacattctggaatatcaaatttagttaaataaatga consensus: **** * **** *** * * * ** ******** ** * ** *** ***** ** ** ** ***** ** **** * ** ****** ** 1080~1200: Scer.....: --aactatgctta-ttctcaaatagaa-tgtatatatactataatatattggttaacgtgtgttatgcaaaat---gctttttgatg-atgaaatttagcaaaa-----gaggaggaagc Spar.....: --agctacgtccatcccttaaatagaa-tgtatatatactataatatattggttaacgtgtgttacgcagtatttcgcttcttgatt-acaaaattaaacaaaa-----gtgg-aagaac Smik.....: tgagctacgtctaacccccaaatataa-tgtatatatactataataaattggttcatatgcgccacactaagtttcgctgttggatg-aggagttcaaacacta-----tcggaaagaac Sbay.....: gaatttatatctacacctcgattataattatgtatatacagtactaagttggtttgtatgtgttatgtaaggcatcgcttagtggtgcatcctcctaaatgataagattttgcgagagaa consensus: * ** * * * ** ** * * ******* ** ** ****** ** * * *** * * * * * * Sbay_spli: DDDDDD 1200~1320: Scer.....: tttagcgaatttaacatatccttcatt---gttac-----aaaattgcctacacctcca---ttgatccatgcagtccgattattgtagatt-----------------ttgagtagtcg Spar.....: ttctcttaaatatgcat-tccctcatt---gctaa-------gactatctatgacccta----taatcaatgaagtccgatttttgtaaatt---------------------------- Smik.....: ttaaattgagcacacatgacactcact---gtcac-------gactctc-atgacccca---ttgattaacaaagttccgtctttataa------------------------------- Sbay.....: gtttgtcaggcgaacatatccggtggtaaagctaaagttaaagacacttggtcaaactgctcgtgctcttcaatgtacgattgtcgttaatcccgctgatcaatgacgcttaagtcatca consensus: * *** * * * * * * * * ** * * * * 1320~1440: Scer.....: atcttgaaaggcatttttgacg--aattacaagaa-ctcagcatcgatcaaatcttctacatgcgtatattgtaaaggaagacatcggctcttaagagaaatgaggcggacctgtaattc Spar.....: ---ttaaagggcattttcgacg--att-tcaaaaa-ctcagcgccgatgaaatcttccacatg-atatactgttaaggaagacatcggctcgtaagaagaatgaagcgaacctctatttc Smik.....: ----tgtatgtaatttttgacg--gttatcaagag-ttccg-gctggtgacaacttcaacatgaatataatggataagaagacaacagctcttgagaggttttaagcaagtttc-aattc Sbay.....: atttcgtagggcattttcgacggagacgttaagaatttcaacaataataacaacttccacatgcatac----ggaaagacgtgatgggcagaaaatatatat-aaataaacctccaattc consensus: * * ***** **** ** * ** * * * **** ***** ** * ** * * ** * * * * * * *** Smik_spli: DDDDDD 1440~1523: Scer.....: tgatataaaagtattccgatttattcaag-attgagaagctgttttcagaatttttgattggagagagcctgggcctaagtc- Spar.....: tgatataaaagcactccaattcattcggaggttgagaacttgttttcagaatccttagttgaaaagaacctgaggtttaagtc Smik.....: tgatattcaagttatataa-tcatttgga-gccgataacttattttca-aacttgtaattggaaagaacttgggcttaaggtc Sbay.....: caatttaaaaacaaagaca-tctttccca-gctggttacttatatccagcacgttcgactgga-agagcttgggtgttcgatc consensus: ** * ** * * ** * * * * * ** * ** * *** * ** * * { alias......: ['RPS14A', 'CRY1', 'RPL59'] chromosome.: 3 description: Ribosomal protein S14A (rp59A) end........: 178212 exons......: [(1, 7), (315, 721)] gene.......: RPS14A introns....: [(8, 314)] length.....: 721 name.......: YCR031C plength....: 240 start......: 177492 tdist......: 137127 type.......: ORF up.........: 0 } Scer: 4 donors and 4 branches Spar: 6 donors and 2 branches Smik: 5 donors and 3 branches Sbay: 8 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1437), ('Spar', 1437), ('Smik', 1437), ('Sbay', 1437)] ->[('Scer', 1888), ('Spar', 1888), ('Smik', 1888), ('Sbay', 1888)] ->[('Scer', 2174), ('Spar', 2174), ('Smik', 2174)] ->[('Scer', 104), ('Sbay', 104)] ->[('Spar', 2968), ('Smik', 2960)] ->[('Sbay', 1959)] ->[('Sbay', 2229)] ->[('Sbay', 2396)] ->[('Sbay', 2869)] ->[('Sbay', 3210)] ->[('Smik', 3157)] ->[('Spar', 76)] ->[('Spar', 757)] ] [ ->[('Scer', 1704), ('Spar', 1704), ('Smik', 1704), ('Sbay', 1704)] ->[('Scer', 273)] ->[('Scer', 506)] ->[('Scer', 775)] ->[('Smik', 1378)] ->[('Smik', 3011)] ->[('Spar', 2364)] ] 0~120: Scer.....: atccgtattgtgtttt-tttttggcagaaaggagaaagaaccaattggcttgcagttcttgctgct-atagtccttttatgagttcttcaaatgatttatttgg-gtcagttga-atca- Spar.....: atccctaacgttttttatttttggcagaaaggagaaacaaccaattggcttgcagtt-gtgctgct-acagtcgttgtatgaatattttagataatttacttga-attaggaga-atcac Smik.....: gtccctagc---ttatatattgggtagaaaagaagaacaaccaattggcttgcagtg-atgctact-agaatcggagtataagtgctctagattatttttataaccttaggcgatattgc Sbay.....: ----------aaccccgatttttgcaaaaaggagaagaaaacagttcgcttgcaata-gtaccactaagagccgtcgtaaggaagcttcgaatggtgtccctga-gttaagtgaactaga consensus: ** * * *** ** * ** ** ** ******* * * * ** * * * ** * ** * * * * * ** * Scer_spli: DDDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDDD 120~240: Scer.....: -g-taatcacatcaacgagattctattgtactggaaagggg-ccgatgcagtagggacaaatgctatagctttgaaggcttcttattttccccattacccggattacaaagtcactacct Spar.....: gg-taatcacatcaacgagatcctgttgtcctggaaaggggttcgatgcggtaaggacaaagattccaacttttaagacttcttatttt-cccattacccggattgtaaagttactgcac Smik.....: aa-ggattacatcagcggaatcctactgtagtgaaaggggg-tcgatgcggtggggacaaagatgctgactttgaaggcctcttatatttcccattacccggataggttgtttacgacat Sbay.....: aatttcttacgtaaacgagatctcactgtgctgaaaagggg-ccgatg-ggtggggacagagactctaaatcc-aagacttcttgtatttcctattacccggtttcgtagattatcgcgg consensus: * ** * * ** ** *** ** ** **** ***** ** ***** * * *** * **** * ** ** ********* * * * * 240~360: Scer.....: tcatc---acccgtacgagtattaagtaataataactaacagtttggaaggct-ctatatttt-agtctatttagttgctcttggtcttgctttattatcaagtctgcactcttcctttc Spar.....: taccc---gcttccaggagcactaaacgatagcgagggacagcttgaaatgccaatacattttaagaccgttaacttgctcttgactctcctttattgtctagtctttattgcttctttt Smik.....: cgtcg---acc-------atattgaacaataatgatgggcagcggcgagtgtcgaattgttttcagaccatctacttgtccttaaccgtgccccgtt----------tataccttcgttt Sbay.....: tgctttaaataacgagtaacaatgaggattggcaatggagaataatagatattgtcgttttcggctgtcttctcctcaattaaattcccttccttttagtcggaatagaatgccttattt consensus: * * * * * * ** * * ** * ** Scer_spli: BBBBBBB 360~480: Scer.....: ttctaggcatatatcgccttatcaatgggctg-aa----------------g-aaaataaccgctgaagtcgaaat-agatatgaca----agttgcttcctgtctttatggtctgagag Spar.....: ctctggggggacatcgcctcatcatttggttg-aa---------gcagggcg-gaaataaccgccgaagtcaaact-ggatgt--ca----agttttcttct-tgtttatggccagatag Smik.....: ccctcaaaagatgagaattcataatttagcaataa---------gtaagggg-gaaataaccgctgattttaagctaaggcctgccc----aagttccact--tgtttgtggttatacac Sbay.....: tcttttatgattaaactttcattatttgcttatagcaccttcccgcaggcagcaaaataaccgccgaaggcaaacttaaggttaataccgctgatgtctctt-tattgatcactaaacac consensus: * * ** * * * * ********** ** * * * * * ** * * * 480~600: Scer.....: cagtaaaaaagcttca-tggtaactttattaacataccgcaaacaaagctttgcaacgcaaatttttggtgagcttttgcttcagcaatgtattttctttaagccatgcatg--aatcac Spar.....: aaaccaaaaatatcca-tgacactttgttcggtataccataaactaag--ttgaaaagtggactctt-ctggacctttgcttgagcattatgttttctttgagcc---catg----ttac Smik.....: agaacaaacgacttga-taatagttt-------gtgctgtaaaacaa---tttcaa---aaatatgtaatagtgtttt--ccgagtatcatgttttcctgggatcatgaatggcattcta Sbay.....: tactaaaaaaagctggctgaaaaattgttcggtcttcagtttagcaa--cgtgacaaatccatatcttttggtgttatgcttc-gtgccatgcttactctgttcatggaactcactcttc consensus: *** * * ** * * * ** * * * * * * * * * ** * * Scer_spli: BBBBBBB 600~720: Scer.....: att--gttacctgg-----caaaattat-tgaaaaatattatcaagggccgggtaatatacccagatatacattttttt-ttcctgttcttttctt----tataaagtgagatccttctt Spar.....: ctg--ttagtgttg-----cttaattatataaaaaaaagtattgatgtccgggtaacgctatcagg-----gcattttt-tacctgttttttcctt----tataag--agagttcctcta Smik.....: cta--tttatgaaaa--ctcccaggaaagtacagagaaatcacattacccggataatatcactgta-------tttttc-tgtctttattttcatt----tataaag-agtgcacttcat Sbay.....: tttgcttcgtatagattcctctaaatctatcaaaaccgatttcgcgtttcgggtaacatagctttttgaactttttttcacctctgtactttctttctgctttaaag-aaaactttttgt consensus: * * * * * * * *** *** **** ** * *** ** * *** * 720~840: Scer.....: ttattgat---tcactgtgaccgttgttttttcaactgtgaact---tataagaaaattaacaaaataatttacattccaaggaccggtattattgtaggggatttgtgactttcaaggc Spar.....: acattgatacctcattgtcacctttgatctttagtctgtgagtttagtaaaagaaaactaataaaataatttacattccaaggaccggtattattgtaggggatttgtgactttcaaggc Smik.....: atattgttagataatttcctttaaccgattttcagttgtta-------cagtgaaaaataacaaaatattttacattccaaggaccggtattattgtaggggatttgtgactttcaaggc Sbay.....: acacttaagatactattcatttactgtattatttagggaatttgcaatagtaaaagagtaataaaataatttaca-tctaaggaccggtattattgtaggggatttgtgactttctaggc consensus: * * * * * * ** * *** ****** ****** ** ************************************ **** Scer_spli: BBBBBBB Spar_spli: DDDDDD 840~960: Scer.....: aacgtcctctctacaaccgagttcgagaataagtacaaatggctctttttgttattcgaaagcttacaagttctggtatattctatatactcac-ttattactttcaagtacttcacacg Spar.....: aacgtcctctctacaaccgggttcgagaataaatacaaatggctctttttgttattcgaaagcttacaagttgtagtatattc-gtatactcac-ttattactttcaagtacttcacacg Smik.....: aatgtcctctctacaaccgagttcaagaataagcat-aacggctctttttgttattcgaaagcttacaagatgcagtatcttc-gtatactctc-ctatcactttctagtacttcacacg Sbay.....: aatgtcctctctacaaccgagttcgagaataaataccaatggctctttttgttattcgaaagcttacaaggtatagcgtattttatatgctttctttatcactttccagtacttcacacg consensus: ** **************** **** ******* * ** ****************************** * * * ** *** ** * *** ****** ************* 960~1080: Scer.....: ggcctgacatc----tctattc----ttgttactcactgattat--cg-ttcttgttcatacttgt----tatg-tatcttctttctccctatttaa------aatgtaata-----gag Spar.....: ggcctgacatc--tttccattcctaattcctacccactgataaa--cg-ttcttacttgccctttt----tatg-tatcctctctcctcat-caaga------aatgtgata---ctggg Smik.....: ggcctgacatctctttctgtcccttcctatcaactactaaagac--tgattcttgttctttctttcactacata-caacttcttttcctccagttac------aaagcaata--cctggg Sbay.....: ggtctaacatt--tcttcactaaatctctttatctactcaaaacgttcccacttgcattttctttcatagcgtgctatgctgtctccttctcttgaggtcattattatagtattcctgag consensus: ** ** **** * * *** * * *** *** * * * * * * ** * * 1080~1200: Scer.....: actgctttggagtactta-cgtgcggtgtacggacttaat--aaacatctgtaca-ttttac----------------tactctttttttttgcgttcttttt-----ttcaccttcagc Spar.....: actgttttgccacatatg-agtgtggtgcacggtagttat--aaacatctgtacatttttac----------------tattctttttttttgcgatttttttctctcttcaccattggc Smik.....: actgctttgatcgattat-agtgtggtgtacggattttgt--acacacctgtacatctgtacatctgtacatctaaaatattctctgaacttgcgttctttttcact-tctagaggaagc Sbay.....: actgctcttctatatctgcagggtggtgtacggattgtatacaaacatctgtacatttcaaact-----------aaaagtattttgattttactttttttctcagc-gatgacgccgtc consensus: **** * * * * * **** **** * * *** ******* * * * * ** * * *** * * 1200~1320: Scer.....: ---acgagcattgccattctctactgc--attttggcaaatttgtctgcttgcggcagaccatccc-gcctcctggctcattccatatggtgcaggg----cttcctcaggtagacag-- Spar.....: actaccaatatccctacgccccgcggt--cctttggcaaattcttctgtttgcggaagactgtcctggcctcttggcttattccatatgctgcaggg----tttcctcaggtagatag-- Smik.....: gaccattccattcttctgcatcgccgccgcttttggtaaactcctcggcttgcggcaaaccttcttgctctcttggcttattcaatctacggcaggggattcctcttgaggtgaatagcc Sbay.....: atcgctgac-ttgctttctttcgtcgcagtttgccaaaatcccttggacttgcagcaaacct-----aaggcctagcttattctatccaccaaaggg----gaatctagtgcaaaa---- consensus: * * * ** * **** * * ** * * *** **** ** **** * * * 1320~1440: total....: === Scer.....: ------ttgaaatgaattggttattaatcactatatattacagaa-agcactttttaatgaagattcta-ttttaaacccaaggagagtaagaaaccacaagaacccgccATGTCTAGTA Spar.....: ------ttgaaaagaattggttattaatcgttatatttcactata-agcactttctatttagcattgaatttttaaactcaagaagactaagaaaccacaagaacccgccatgtctagta Smik.....: caaaatttgaagagaactgattattaattg--atatttgactgaa-atcgcatcctattattaactaga-ttttaaactaaagacaattaagaaaccacaagaacccgccatgtctagta Sbay.....: ------ttgaaaaaaaacggtatatgaacgttttgtttaacagaatgatttttttcgctgtgtattaaa-atttaagcttaagaggactaagaaaccacaagaacccaacatgtctagta consensus: ***** ** * * * * * * * ** * * * * * * ***** * *** * ******************* *********** Scer_spli: DDD Spar_spli: DDD Smik_spli: BBBBBBB DDD Sbay_spli: DDD known....: >== 1440~1560: total....: === Scer.....: TGTTT-AATCACATAGTGAACATTTTTAAAGCATCTCTATTTTCCATTGATTGTTGTTGAATGTTTCTGACGACGTGCAAGATACATTGAAAG--TCAGAAACATAAAGACAATTCAACG Spar.....: tgttt-agtcacattgtgaatattcccgagg-atcggtattttccattgactgttgttggatgtctctgatgatgtgcgag-tgcatcgaaaactctgaaaacatgaacacaactgaacg Smik.....: tgttt-gatcacatagtgaatattacgaaggatcggctattttccattg--tgttgtttggtgtattcgaagatgttcataccccatcgaaaactcagaaaacatgaaaacgagtggacg Sbay.....: tgtttaaatgccatattaaatgctcaagagaatcgactattttccattgaatgtaatttcatgcttcctatgatgtgcacaggtcatcgaaaaccttaaaaaataaaaaataaatcggta consensus: ***** * *** * ** * * ************ *** ** ** * * ** ** * *** **** *** ** * * * Scer_spli: DDD Spar_spli: DDD Smik_spli: DDD Sbay_spli: DDD known....: ======================================================================================================================== 1560~1680: Scer.....: AATTCATTGCCTCCAAAGTAATTCATAGCGATTAGTTGAGCCTATTGTGTCAATGGCAGTATATTTTGTCAAC------TTTTTTTTCGATGGAAAAGCAAAGATACTATGTAAGAAT-- Spar.....: aaattattgcccccaaagtaattcgtatcaattagttgagtttgtcttatcaatggcagtacatcacgtcaac-------tttttctcaatggaattgcagaattattatg--------- Smik.....: aggttattactttcgaa-caatttgt---tatttgt--attgtatcgtagtaaccatagttcatcacgtcaac---------ttttccaatggaaatgcaggattattgtattagagtct Sbay.....: aa--caatgttgtcacttcaaacagt----tttatgccaacggtttgcatcagcaataatatagcacgccagttgacttttttttttcaatggaaatagaggattacttcacgaggatct consensus: * * * * ** * ** * * * * * * * ** *** * ****** * ** * known....: ======================================================================================================================== 1680~1800: total....: ======= Scer.....: ----TAAAAAAAAAAACTTTTGGATACTAACAACATTACGTTT-GATATCGTCCGATATCGATTTACTATT--TCCATTTAGACGTTGTTCAAGCTCGTGACAATTCCCAAGTTTTTGGT Spar.....: -----aaaaaaagaaacctttggatactaacagaattacttttcgATGTCGTCCGATATCGA-TTACTATT--TTCATGTAGACGTTGTTCAAGCTCGTGACAATTCCCAAGTTTTTGGT Smik.....: taagaaaataaagaaacttttggatactaacaaaattaattactgatatctttcgatatcaa-ctattgtt-gtttatttagacgttgttcaagctcgtgacaattcccaagtttttggt Sbay.....: ----gaaagaaaaggaactctgtatactaacaaaatcattaaatggtatcttccgatatcaa-ttgttatttttctatttagacgttgttcaagctcgtgacaattcccaagtttttggt consensus: *** *** * * ** ********* ** * * * ** * ******* * * * ** * ** ***************************************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ================================================================================>= 1800~1920: total....: ====== Scer.....: GTTGCTAGAATTTACGCTTCTTTCAACGATACTTTCGTTCATGTTACCGATTTATCTGGTAAGGAAACCATCGCCAGAGTTACTGGTGGTATGAAGGTTAAGGCTGACAGAGATGAATCT Spar.....: GTTGCTAGAATCTACGCTTCTTTCAACGATACTTTCGTTCACGTTACCGATTTATCTGGTAAGGAAACCATCGCCAGAGTTACTGGTGGTATGAAGGTTAAAGCAGACAGAGATGAATCT Smik.....: gttgctagaatctacgcttctttcaacgatactttcgtccatgttaccgatttatctggtaaggaaaccatcgccagagttactggtggtATGAAGGTCAAAGCTGACAGAGATGAATCT Sbay.....: gtcgctagaatcttcgcttctttcaacgatactttcgtccatgttaccgatctatctggtaaggaaaccatcgccagagttactggtggtATGAAGGTCAAGGCTGACAGAGATGAATCT consensus: ** ******** * ************************ ** ********* ********************************************** ** ** *************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1920~2040: Scer.....: TCTCCATACGCTGCTATGTTGGCTGCCCAAGATGTTGCCGCTAAGTGTAAGGAAGTCGGTATCACTGCCGTTCACGTTAAGATCAGAGCTACCGGTGGTACTAGAACCAAGACTCCAGGT Spar.....: TCCCCATATGCTGCTATGTTGGCTGCCCAAGATGTTGCCGCTAAGTGTAAGGAAGTTGGTATCACTGCCGTTCACGTTAAGATCAGAGCTACCGGTGGTACTAGAACCAAGACTCCAGGT Smik.....: TCCCCATACGCTGCTATGTTGGCTGCTCAAGATGTTGCCGCTAAGTGTAAGGAAGTTGGTATCACTGCTGTTCACGTTAAGATCAGAGCTACCGGTGGTACTAGAACTAAGACTCCAGGC Sbay.....: TCTCCATACGCTGCTATGTTGGCTGCCCAAGATGTCGCTGTTAAGTGTAAGGAAGTCGGTATCACTGCCGTCCACGTCAAAATCAGAGCTACTGGTGGTACTAGAACCAAGACTCCAGGT consensus: ** ***** ***************** ******** ** * *************** *********** ** ***** ** *********** ************** *********** Sbay_spli: DDDDDD 2040~2160: Scer.....: CCAGGTGGTCAAGCTGCTTTGAGAGCTTTGGCCAGATCTGGTTTGAGAATTGGCCGTATCGAAGATGTTACCCCAGTTCCATCTGACTCCACCAGAAAGAAGGGTGGTAGAAGAGGTAGA Spar.....: CCAGGTGGCCAAGCCGCTTTGAGAGCTTTGGCCAGATCTGGTTTGAGAATTGGCCGTATCGAAGATGTTACCCCAGTTCCATCCGACTCCACTAGAAAGAAGGGTGGTAGAAGAGGTAGA Smik.....: CCAGGTGGTCAAGCTGCTTTAAGAGCTTTGGCAAGATCTGGTTTGAGAATTGGACGTATCGAAGATGTTACCCCAGTTCCATCTGACTCCACCAGAAAGAAGGGTGGTAGAAGAGGTAGA Sbay.....: CCAGGTGGTCAAGCTGCTTTGAGAGCTTTGGCCAGATCCGGTTTGAGAATTGGTCGTATCGAAGATGTTACCCCAGTTCCATCTGACTCCACCAGAAAGAAGGGTGGTAGAAGAGGTAGA consensus: ******** ***** ***** *********** ***** ************** ***************************** ******** *************************** 2160~2280: Scer.....: AGATTATGAgttatgcatgta-------ttgtacttgtattgccgtattattttttacagttaaaaaatgtgtacatataattatatagcgcccataatcaaatcagc---tcatacgtc Spar.....: AGATTATGAgttatgcatgtacttgtacttgtacttgtattgccgaattattttttacaattaaaaaatgtgtacatataattatatagcgcccataatcaaatcagc---ccatacgtt Smik.....: AGATTATGAgttatgcatgta------cttgtacttgtattgccgtatta-tttttacaatcaaataatgtgtacatataattagatagcgttcataatcaaatcaac---tcatacgtt Sbay.....: AGATTATGAtttgcacatgta------cttgtacatgtactgcggtattattttttacaattaaaaaatgtatgtatataattatatagcg-ccataatcaaatcaacttttcatatgtt consensus: ********* ** ****** ****** **** *** * **** ******** * *** ***** * ********* ****** ************* * **** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2280~2400: Scer.....: aatttagtaataa--aaaaaagcccttataaccttttagttaagaagattcaagattg---------cgattt--gattaacgtcatta----cggaaatgt--aa--------ggacac Spar.....: aatttagtaataaacaaaaaaacccttataa-tttttagttaa----actcaaggtct---------ccattt--aggtaacgttgctaacggagggagtaa--aattcacaagaaatat Smik.....: aatttagtgaaaag-agaaactcatttataa-gtccaaattaataaagctcatagaaa---------tcattt--gaggaaagtcacgc----aaaaaagat--aa-------gaaaagt Sbay.....: aatttaatagaat--aatcaaaatcttaagaaattttatctaatggaattcaaggttgaagacatgcttatctagaagtagtgatacgatcacaaaaaagatgcaaataagaaagggtat consensus: ****** * * * * *** * * * *** *** ** * * * * ** Spar_spli: BBBBBBB Sbay_spli: DDDD 2400~2520: Scer.....: aattaccaagagttacaaa-atcggttcagagatttaaaactgtcgaaaacactgtaatcataaagtttgaatgctttcagatactatctagcat-aaattgtgttt-aaaaaaatcatc Spar.....: aattaccaagacttacaaa-atcgattcagagatttaaaactgtcgaaaacactataatcataaagtttaaatgctttcagatactatctagcat-aaattgtgttcaaaaaaaatcatc Smik.....: a--taccaaggctggcaaa-atcgtttcagata-ttaaaactgtcgaaaacactataatcatgaagtttaaatgctttcagatactatctagcataaaattgtgttc-aaaaaaatcatc Sbay.....: gtttacaaaagtttacaaatattgtttcagaga-ttaaaactgtcgaaaacactgtaatcataaag-ttaaatgctttcagatactatctagcatataa--gtgttc-aaaaaactcatc consensus: *** ** * **** ** * ****** * ******************** ******* *** ** ************************* ** ***** ****** ***** Sbay_spli: DD 2520~2640: Scer.....: attttagaattttgttg-----acaagaaca--tctggtgaagcaggctacccctttttaaaatacgtggaaaa---aaaaatgacgttctcgtcattgtcatcttccatgtctacgcct Spar.....: atttaaaaattttgtta-----acaagaata--cttggtagaaccggctac---gttttaaaatatgcaaaaaaaagaaaaatgacgttctcgtcattctcatctttcatgccaacgtgt Smik.....: a-ttaaaagatttgtca-----acaagaacg---ctggtaaaccagatt--------------tatgtttaaaaaagcaacaagacgtcctcgtcattgttatttttcattcccacattt Sbay.....: attataaaaaacatttgcacacacaagaatatgtttggtaaacttgtttac---gtttaaaagaatctatcaaa-cgcaatatgacgtcctcgtcatcgttacccctactgccgcatggt consensus: * * * * * ******* **** * * * * *** ** * ***** ******** * * * * * 2640~2760: Scer.....: tttcgt--gtccatttcattctattgatta--acttattagacatcggagggaagtttttccacctatgttatatatgtaaa--------------------------tttttttttgaa Spar.....: acttcc--gtctcgtttattccattaatca--acttatcagaaatctgaagcaagcttttccagttttattgtatatatatatatatatatatatatatatatttttttttttttttgaa Smik.....: atgtgtagatctagttctttcagttttcgacttcttaacataaattggaagcaagtttttctagattt-ttatacatat-----------------------------tttttttcggaa Sbay.....: gttgagctccatcctgtggagcattgattg-aacttcttgaaaactagaaatatattttttcaagtt--ttatatcaa------------------------------actttccctgaa consensus: * ** *** * * ** * **** * * ** ** *** *** 2760~2880: Scer.....: ggaggcgcgcataaaataa-------tctcaca--ctattttgaacattgcttagggttgagtggggagtaaagaataa------agcgaatc--------ctattcgtgtaagccggtc Spar.....: ggaggcgcgcataaaagaa-------tcaggca-tttctttttaacattgtttagggctgagtggggtggaaagagtaa------agcgaatc--------ccattcgtgtaagccaatt Smik.....: gagcgcatgaaaggatcgaacgattctcttgcgcatttttttctgtattgtttagggctgaat-gaacgcaaagagtaaataaggatcgaatt-------gttttttagggaagtaattt Sbay.....: gg-cgcataaaaaagataccgaacatttttcaggattgtttct--tttcaattagggttgaggagagctgacaaaaaaaaggcgagccgtatagcatacagctagactggtaagtcaatc consensus: * ** * * * *** * ****** *** * * * * ** ** ** * *** * Sbay_spli: DDDDDD 2880~3000: Scer.....: t-acttattgataacaatattttacaggcggctatcatgtttcagcttacgcattcacag-tcaggttggtgctctacatgaataccagcgtttactttcatttacagagtactagcacc Spar.....: c-atttacagacagcaat---ttgcaggcggctgttgttgtccattttacgcatccatagcccatcataatgctgtacataagtaccagcatgtaattcc-tttatactttactagcacc Smik.....: c-aatcaaaaacagcaaa--tttttaag------tcaatttccctcttatacattcatag-ccacaataatgccctatttgtatgctagcgtttaatttt-cctacactctattagcatt Sbay.....: cgagctacaaacgtcagca-tttatgacaggtagtcaccttctctcttatgccttcactt-tcagcgctgagccccgcttgaacatcagcaattgcttctattgtacatttgtcggtgct consensus: * * * ** ** * * *** * * ** ** ** * *** * ** * * Spar_spli: DDDDDD Smik_spli: DDDDDD 3000~3120: Scer.....: tccactgtcgctaatact--gaatttagttttgaagagtgaaaacaacta-aatcaggcggtagaagaaaatcaatagctcatatattcttatatattacaggtgat------atttgta Spar.....: tgc-ccgtcgctagtaatacagattcggcttttaaggatagaaacaactgccattgggtagtagaagaaagtcgatagctcataagttcttatatatcattgataat------atgtgta Smik.....: ttc-ctgttcgcactaacacgtgaacggctaacatggg-gaaaagaata--caggaagtagcagaagggattgaacagcttataaacaggtaaatattattgttaatttgcaaatatata Sbay.....: ttc-ctgtaatgaggagtgcccattcatattttgtaggcttaattatcat-catcaggtaaaaggaaggagcttgatgtccctacattacaggatgtag--gctaatatacatgtgtgcg consensus: * * * ** * * * ** * * * ** * * * ** ** * * * ** * * Smik_spli: BBBBBBB 3120~3240: Scer.....: t-------------atgattatgaatggcttttcgtagcccgtgatct-ttcatttctatatta-tgtgtagc-taaaagggccccttaagtacttgcagattgaaaaactct-atattg Spar.....: t-------------atgattacgaatgtcttttcgtagtccgtgatctctccctttccatatta-tgtgtagtgaaaaagggccccttaagtgcgtgcagaatgaaaaactct-atatta Smik.....: tgcactcttcgcgcatattcgtaaatgtcttttcgtagtcagtgatttctccttttc-----ta-tgtgcaga-aagaagggccccttaagtgcgtgcagaatgaaaaactctaatattg Sbay.....: tctaatacatatgctcagttat-aatcttacgtcgtatttagtgacttctccttttcctttacgctttgtagtctaaac--cccccctaagtacgtgcagagtgaaaaactctaatattg consensus: * * *** ***** **** * * * **** * ** ** * * **** ***** * ****** *********** ***** Smik_spli: DDDDDD Sbay_spli: DDDDDD 3240~3360: Scer.....: cattcaagttttcacgaaatacaaagaaaaggtctcgtagttattgccttaataaaggaattacttt-tgctgtagtcgtattgaagcaagcttatttgaaaattgcgaataatcacctc Spar.....: aattcaagttttcacgagctacgaacaagagatctcgtagttattgccttgacgaagaagttacttt-tgttgtactcgtatcgaaggaaatttatctgaaaattgcgagtaagcgtctc Smik.....: gatccaagtttcgacgaacagcaaacaataaattttgtagttactgtcttgacgaaggtgttac-tt-tgtcgtattcgtatcgaaacaaacttatttgaaaactacgagttagcatccc Sbay.....: aagtcaagcttacacaagctacaacgaggatatttagcgcttgcttacttaataaatagcttgctttctgttccagtttaattgaaacaaa-tcagttggaaagtgcgagtgaacatccc consensus: * **** ** ** * * * * * * * * ** * *** * ** ** * ** ** * * ** *** ** * * ** *** * *** * * * * * 3360~3362: Scer.....: tc Spar.....: tc Smik.....: tc Sbay.....: ca { alias......: [] chromosome.: 4 description: Hypothetical ORF end........: 431513 exons......: [(1, 45), (132, 410)] gene.......: introns....: [(46, 131)] length.....: 410 name.......: YDL012C plength....: 136 start......: 431104 tdist......: 431104 type.......: ORF up.........: 0 } Scer: 3 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 383)] ->[('Scer', 625)] ->[('Scer', 857)] ] [ ->[('Scer', 184)] ->[('Scer', 899)] ] 0~120: Scer.....: aataaaattgtttctatattaaaccgctaggttgctaaggtttcgtcttttctatcttacgataatttgcttaaaagttcatttagagaatagatagtgatctttcccagtataatgttt consensus: ************************************************************************************************************************ 120~240: Scer.....: tcccgatttcgcgaacgctccgcctcaggcgccccgggacgcgtcatgcgcgttccagaaagttaactaactgctagtgcattcaatttctcaaggcgtagtatttgggatctataaagc consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 240~360: Scer.....: cttcgacattaagcactatgcttaaaagcgaacagcctgcgccactacttaagagcgaatcttgtgtggagggatgactaggtccaaagagggagaaaaggatcttgcggaaaagtcaac consensus: ************************************************************************************************************************ 360~480: Scer.....: aacactaatcggtagctgagtctgtcagtgcatccttactggcttactattttcattcatgctgcaagtagattatcctctagttaaattaaacgcggatgaactacgccattaaatcca consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 480~600: Scer.....: tcataagaaactaattactacttttaggaaattagccaactaaaaactgctgaaacgccacatttcacataaaaccccacggagcagtaatgggagatcttaagctcagcccagtacata consensus: ************************************************************************************************************************ 600~720: Scer.....: tgtccatcagccttgaatagccacggtgagttctcgaagcttccttccacctagtccagaatatttcttggtaaatggctcgaagttttcgtattaaacgatgctatcagcggcatcgtg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: aaatattgaaatataaaaagtatttacgcaaccgaaaaggatattaagacaaacccatacaatagcccataaaccaagcaaatacacatctcATGTCAGCTCAAGATTATTACGGAAACT consensus: ************************************************************************************************************************ 840~960: Scer.....: CTGCCTCCAAACAAAGCGTACGTTAATTTTACAAGTTTTGCCTTTAGAAGATCACATCGTACTAACGAGCCCTTGTATTTTCATTACATCACTTTCGATTCAGTATTCTCGTCCTAGCGC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >===================================================================================>= 960~1080: Scer.....: TCCACCACCAGGATATGAAACGGCGTCTAGAGGTTACGCTCCATCGCAAAGCCAACAGAACTATTATCCACCTCAACAGCAGCAGCAGCAGTATCAGCAACAACCTCAATACTATCAGCA consensus: ************************************************************************************************************************ 1080~1200: Scer.....: ACAGCAGCCCCAATATTACCAACAACACCCACAGCAGCCCATTTATGTCCAACAACAACCGGCCAGTTCTGGAAATGAAGACTGTCTAGCGGGCTGTCTAGCGGGTTTATGTTTATGCTG consensus: ************************************************************************************************************************ 1200~1320: Scer.....: TACTTTGGATATGCTGTTTTAGagtatctccatatcttgtgggagcaaaccctttcacacaaatccactatataaaacaaagcacaattgcacctctgatcttttaatcttaattaaata consensus: ************************************************************************************************************************ 1320~1403: Scer.....: agcgtgattaaagtgttcatgcaagtagataatatataatgatgataagttcgaaaatgcccttataaaaattaaaccgcgtg consensus: *********************************************************************************** { alias......: ['ARP2', 'ACT2'] chromosome.: 4 description: actin-related protein end........: 400634 exons......: [(1, 22), (146, 1299)] gene.......: ARP2 introns....: [(23, 145)] length.....: 1299 name.......: YDL029W plength....: 433 start......: 399336 tdist......: 399336 type.......: ORF up.........: 1 } Scer: 4 donors and 3 branches Spar: 8 donors and 4 branches Smik: 6 donors and 1 branches Sbay: 8 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 75), ('Spar', 75), ('Smik', 75), ('Smik', 79)] ->[('Scer', 289), ('Spar', 289), ('Smik', 289), ('Sbay', 289)] ->[('Scer', 1312), ('Spar', 1312), ('Smik', 1312), ('Sbay', 1312)] ->[('Scer', 1116), ('Spar', 1116), ('Sbay', 1116)] ->[('Smik', 577), ('Sbay', 577)] ->[('Spar', 1059), ('Smik', 1059)] ->[('Sbay', 111)] ->[('Sbay', 1024)] ->[('Sbay', 1871)] ->[('Sbay', 1895)] ->[('Spar', 48)] ->[('Spar', 1827)] ->[('Spar', 1924)] ] [ ->[('Scer', 710), ('Spar', 710), ('Smik', 710), ('Sbay', 710)] ->[('Scer', 393), ('Spar', 393), ('Sbay', 393)] ->[('Scer', 242), ('Spar', 242)] ->[('Spar', 259)] ] 0~120: total....: ====== Scer.....: -------------------------------aatctctctgt-gatatgtatatttgt-ttgatagatagcagttgtatgtatttatactattcttagta----------------atga Spar.....: -------------------------------aatctccctac-tatatgtatgtttgt-ttgataaatagcagtcgtatgcatttatattgtctttggtacagcggatttatcgtaacgg Smik.....: cttattccattttatatatcaaacatatatatatatatatatatacatatatatatatatacataaatagtggcagtatgtatgtattgtatttccgata-----------tcacgacgt Sbay.....: acaacgcttaagcca----------------tatatgtgtatatatatatatagatatattcatttaaagtaatagcaaatgtatagcgactatttaatagaacaggcatagcatgttag consensus: ** * * * ** *** * * * ** * ** * * * ** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: cctt--attacccgtcttgtaga---attgaaaggcgaaaaacaatttgaggacccatataatggaagaaaacggacgtgaaagttaaatatacg-taccagaa-gacaaatcacagtaa Spar.....: cctt--attacccgtcgcatggc---ttttgaaatgcgaaaacaacttgaggacccatataatggaagaaaacggacatgaaagtcaagtataggctgtcagaa-gacaaataactgtaa Smik.....: gttg--attacccgtcgtgtgagctatttgaaaagcg-aaaacaatttgaagacccacgtaatggataaaaa-agacataagagacaagtgtaggctatcagtg-agcaagtaactgcaa Sbay.....: tttttagttacccgatgcgtgagctttttgaaaagcgaaaaacaatttgaggacccatataatggatgaaaactgatatgaa-gacaggttgaagctgtcagaaaggcaaagaaccacaa consensus: * ******* * ** ** ******* **** ****** ******* **** ** * * * * * * * * *** *** ** ** 240~360: total....: ====== Scer.....: taaact-aacaaaactatataataataATGGACCCACATAATCCAATTGGTATGTTGTTGATATTTTTAGTGTTTGTGGAGGCAATTGAGCTCGGTGCCCCTTTTGGCTTTGCCTC-TTT Spar.....: taaact-aacaaaatcatatactaataatggacccacataacccaattggtatgttgttaatatgtgaagtgtttgtggaggcaattgaccacgataacccctatggctgtgcctcgctt Smik.....: tacaca-aagaaaactatacactaaaaatggatccacataacccaattggtatgttgtcaataagattattaattctaatggcaattgagcttactaccctctacagcttcgtttt-ttt Sbay.....: taaactcaacaaaagtatacgctaataatggatccacataacccaattggtatgttgttaataagaatctcattttcggaggcaattgagcatgctatctcctatagcttggcttctttt consensus: ** ** ** **** *** *** ****** ******** **************** *** ** ********* * * * * *** * * ** Scer_spli: BBBBBBBB DDDDDD Spar_spli: BBBBBBBB BBBBBBB DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >====================================================================== 360~480: Scer.....: TGCATTTTAGTTCTTTTACCCCTATATTATTAATACTAACCATCTCGATATAGTCCTTGATCAGGGTACTGGTTTCGTCAAAATTGGTCGTGCTGGCGAGAATTTCCCAGATTACACGTT Spar.....: tgcactttagttcttttacccctatattattaatactaaccatcttaatatagtccttgatcagggtactggtttcgtcaaaattggtcgtgctggcgagaatttcccagattacacgtt Smik.....: tagtttttagttttga.....................................................................................................ctt Sbay.....: tgca-tttagttcatttacccctatatcattaatactaactatctttttatagtccttgatcagggtactggtttcgtcaagattggacgtgctggtgagaatttcccagattacacgtt consensus: * ******* *********** ************ **** ********************************* ***** ******** ******************** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ===================================================>= 480~600: Scer.....: TCCTTCTATTGTTGGTAGACCCATCTTGAGGGCGGAAGAACGTGCCAGCGTTGCTACACCATTAAAGGACATTATGATTGGTGATGAGGCAAGTGAAGTTCGCTCTTATCTGCAAATATC Spar.....: tccttctatcgttggtagacccatcttaagagcggaagaacgtgccagcgtcactacaccattaaaggatattATGATTGGTGATGAGGCAAGTGAAGTTCGCTCTTATCTGCAGATATC Smik.....: tccttctattgttggtagacccattttaagagcggaagaacgtgctagcgttactacaccattaaaagacattATGATTGGTGATGAGGCAAGTGACGTTCGTTCCTACTTACAGATATC Sbay.....: tccttctattgttggtaggcccatcttaagggcggaagagcgtgcaagcgttactacgccattaaaggatattATGATCGGTGATGAGGCAAGTGATGTTCGTTCCTATCTACAAATTTC consensus: ********* ******** ***** ** ** ******** ***** ***** **** ******** ** ******** ***************** ***** ** ** * ** ** ** Smik_spli: DDDDDD Sbay_spli: DDDDDD 600~720: total....: ======= Scer.....: TTATCCTATGGAAAACGGTATTATTAAGAATTGGACAGATATGGAACTTCTTTGGGATTACGCCTTTTTCGAGCAAATGAAACTACCATCCACCTCCAACGGTAAGATTTTACTAACGGA Spar.....: TTATCCTATGGAAAACGGTATTATTAAGAACTGGACTGATATGGAACTGCTCTGGGATTACGCCTTTTTCGAACAAATGAAATTACCATCCACCTCCAACGGTAAGATTTTATTAACGGA Smik.....: TTATCCCATGGAAAATGGTATCATCAAAAACTGGACAGATATGGAACTACTTTGGGACTACGCCTTTTTCGAACAAATGAAATTACCATCCACCTCCAACGGTAAGATTCTATTAACGGA Sbay.....: TTATCCTATGGAAAATGGTATCATCAAGAACTGGACAGATATGGAACTTCTTTGGGATTACGCCTTTTTCGAACAAATGAAATTACAGTCCACTTCTAACGGTAAGATTTTATTAACGGA consensus: ****** ******** ***** ** ** ** ***** *********** ** ***** ************** ********* *** ***** ** ************ ** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 720~840: Scer.....: ACCTCCAATGAATCCGCTGAAAAATAGGGAAAAAATGTGTGAGGTAATGTTCGAAAAATACGATTTTGGCGGAGTTTATGTTGCCATCCAAGCTGTTCTAGCATTGTACGCACAAGGTTT Spar.....: ACCTCCAATGAATCCGTTGAAAAATAGAGAAAAAATGTGCGAGGTAATGTTTGAGAAATATGATTTTGGTGGAGTCTACGTTGCCATCCAAGCTGTTCTAGCATTGTACGCACAAGGTTT Smik.....: ACCTCCAATGAACCCGTTGAAAAATAGAGAAAAAATGTGCGAGGTAATGTTTGAAAAATACGATTTTGGCGGCGTTTACGTTGCCATCCAGGCTGTGTTAGCATTGTACGCACAAGGTTT Sbay.....: ACCACCAATGAATCCATTGAAAAATAGGGAAAAAATGTGCGAAGTTATGTTTGAAAAATACGATTTTGGTGGAGTTTATGTTGCTATCCAGGCTGTTCTGGCATTATACGCACAGGGGTT consensus: *** ******** ** ********** *********** ** ** ***** ** ***** ******** ** ** ** ***** ***** ***** * ***** ******** ** ** 840~960: Scer.....: GTCTTCAGGAGTCGTCGTCGATTCCGGTGACGGTGTTACTCATATAGTCCCAGTTTACGAATCTGTCGTTTTGAGCCACTTAACAAGAAGATTAGATGTTGCGGGTAGAGACGTTACTAG Spar.....: GTCTTCAGGAGTCGTCGTTGATTCCGGTGATGGTGTTACTCATATAGTTCCAGTTTACGAATCTGTCGTTTTAAGTCACTTGACAAGGAGATTGGATGTTGCGGGCAGAGACGTTACTAG Smik.....: GTCTTCAGGGGTCGTCGTTGATTCGGGTGATGGTGTTACACATATAGTTCCAGTTTACGAATCTGTCGTTTTGAGTCATTTGACAAGAAGATTGGATGTTGCTGGTAGAGACGTGACTAG Sbay.....: GTCATCAGGGGTTGTCGTTGATTCCGGTGACGGTGTCACTCATATAGTTCCAGTTTATGAATCCGTTGTCTTGAATCATTTGACAAGAAGATTGGATGTTGCAGGTAGAGATGTCACTAG consensus: *** ***** ** ***** ***** ***** ***** ** ******** ******** ***** ** ** ** * ** ** ***** ***** ******** ** ***** ** ***** 960~1080: Scer.....: GCATTTGATTGATCTGCTTTCTCGTCGTGGTTATGCATTTAACAGAACTGCAGATTTCGAAACTGTGCGTCAGATAAAGGAAAAATTATGTTATGTTTCATATGATTTAGACCTAGATAC Spar.....: ACATTTGATTGATCTTCTTTCTCGTCGTGGTTACGCATTTAACAGAACTGCAGACTTTGAAACTGTTCGCCAAATAAAGGAAAAATTATGTTACGTTTCGTATGATTTGGACTTGGATAC Smik.....: GCATTTAATTGACTTGCTTTCTCGTCGTGGCTACGCATTTAATAGAACCGCAGACTTTGAAACAGTCCGTCAAATAAAGGAAAAACTATGTTATGTTTCGTATGACTTAGACTTGGATAC Sbay.....: ACATTTAATTGATCTGCTTTCTCGTCGTGGTTACGCATTTAACAGGACTGCTGATTTTGAGACTGTTCGTCAAATAAAGGAAAAACTATGTTATGTCTCATATGACTTAGACTTGGACAC consensus: ***** ***** * ************** ** ******** ** ** ** ** ** ** ** ** ** ** ************ ******* ** ** ***** ** *** * ** ** Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1080~1200: Scer.....: AAAATTGGCTAGAGAAACAACCGCCCTTGTGGAATCGTATGAGTTACCAGATGGCAGGACAATCAAAGTGGGACAAGAGAGATTTGAAGCACCAGAATGTTTGTTCCAACCTGGTTTGGT Spar.....: GAAATTGGCTAGAGAGACGACTGCCCTCGTGGAATCGTATGAGTTACCAGACGGAAGAACAATCAAAGTGGGACAAGAGAGATTTGAGGCTCCAGAATGTTTGTTCCAACCTGGTTTGGT Smik.....: AAAACTGGCTAGAGAAACAACTGCTCTTGTGGAATCGTACGAGTTACCGGATGGGAGGACAATTAAAGTGGGGCAAGAAAGGTTTGAGGCTCCAGAGTGTTTGTTCCAGCCTGGTTTGGT Sbay.....: AAAATTAGCCAGGGAAACTACCACTCTTGTGGAATCGTATGAGCTACCAGATGGTAGGACAATTAAAGTGGGACAAGAGAGATTTGAAGCTCCGGAATGTTTATTTCAGCCTGGTTTAGT consensus: *** * ** ** ** ** ** * ** *********** *** **** ** ** ** ***** ******** ***** ** ***** ** ** ** ***** ** ** ******** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 1200~1320: total....: ====== Scer.....: TGACGTTGAACAACCTGGCGTGGGCGAGCTGTTATTTAATACTGTGCAATCGGCTGATGTTGATATCAGAAGTTCCCTGTATAAGGCCATTGTTCTTTCAGGTGGTTC--AAGTATGTAC Spar.....: AGATGTTGAACAACCTGGTGTAGGGGAACTGTTATTCAATACTGTGCAATCGGCTGATGTTGATATTAGAAGTTCCTTGTATAAGGCTGTTGTTCTTTCAGGTGGTTC--AAGTATGTAC Smik.....: CGATGTCGAGCAACCTGGTGTGGGAGAACTACTATTCAATACCGTGCAATCAGCCGATGTTGATATTAGAAGTTCATTGTATAAAGCTATCGTTCTTTCAGGTGGTTCTGAAGTATGTAA Sbay.....: CGACGTCGAACAACCCGGTGTAGGGGAACTACTATTCAACACCGTGCAATCGGCCGATGTTGACATTAGAAGCTCTTTGTATAAGGCTATTGTCCTTTCGGGTGGTTC--AAGCATGTAT consensus: ** ** ** ***** ** ** ** ** ** **** ** ** ******** ** ******** ** ***** ** ******* ** * ** ***** ******** *** ***** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: CCAGGGCTGCCTTCGAGATTAGAGAAAGAATTGAAACAATTATGGTTTAGTAGAGTTTTACACAATGACCCTTCAAGACTTGATAAATTCAAAGTTAGAATTGAAGATCCTCCAAGGAGA Spar.....: CCAGGGCTGCCTTCAAGATTGGAGAAGGAGCTGAAACAATTATGGTTTAGCAGAGTTTTACACAATGACCCTTCAAGACTTGATAAATTTAAAGTTAGGATCGAAGACCCTCCAAGGAGA Smik.....: CCAGGTCTTCCTTCAAGATTAAaaaaagaactgaaaca.................................................................................. Sbay.....: CCAGGTCTTCCCTCAAGATTGGAAAAAGAATTGAAACAACTATGGTTTAGTAGAGTCTTACACAATGACCCTTCAAGACTTGATAAGTTTAAAGTTAGAATCGAGGATCCGCCAAGGAGA consensus: ***** ** ** ** ***** * ** ** ******** ********** ***** ***************************** ** ******** ** ** ** ** ********* 1440~1560: Scer.....: AAGCATATGGTTTTCATTGGTGGTGCCGTTTTAGCTAGTATCATGGCTGATAAAGACCACATGTGGTTGTCTAAGCAAGAATGGCAAGAAAGCGGGCCATCTGCAATGACTAAATTTGGT Spar.....: AAGCATATGGTTTTCATTGGTGGTGCCGTTTTAGCTAGTATCATGGCTGATAAAGACCATATGTGGTTGTCTAAACAAGAATGGCAAGAAAGCGGGCCAGCCGCAATGACTAAATTTGGT Sbay.....: AAGCATATGGTTTTCATAGGTGGTGCGGTCTTGGCCAGTATCATGGCTGATAAGGACCATATGTGGTTGTCCAAGCAAGAGTGGCAAGAAAGTGGGCCAGCCGCAATGAGTAAATTTGGT consensus: ***************** ******** ** ** ** ***************** ***** *********** ** ***** *********** ****** * ******* ********** 1560~1680: Scer.....: CCAAGATAGatttgaactttattgatccaaaag----aattaataaaaaagtttaaatctacgaatgaaaaatggaaatggaataatataaacttatatataaatgtaataagttaataa Spar.....: CCAAGATAGatttgaactttattgactcaaaaa----aattagtaaaaaaatataaatctacgaaggaaagatggaaatgaaa-aatgtaaacttatatataaatgtaataagttaataa Sbay.....: CCGAGATAGatttgaactttattgatcgaaaaacaaaaattaataaaaaa-tataattctacaa--cgaaaatggaaatgaaa-aatatgaacttatgtac--attttataagttaataa consensus: ** ********************** **** ***** ******* * *** ***** * ** ********* ** *** * ******* ** ** * ************ 1680~1800: Scer.....: ggcacaattgttgaacaag--caatcaaaatataatattt-cactgagcgccgttagaggatagttatcctt-----ttcttggtatttcaagtattcagtgtctg-tgtcgaaa-aatt Spar.....: ggcacaattttttgaaaagaacaatcaaaatataacgtct-cgttaagcgccattagacgatagttatccct-----tctttgct-tttcaggcattcagtatctg-tgacgaaataagt Sbay.....: gaaacaatt-ttgaaaaaaacatatcaaaatcgaatttttgcatcaagtgtcctttaggcaaggttagtgtcatcaattgctggaattctaaaaatcgtataagtaataaaaaaatcagt consensus: * ****** ** * ** ******** ** * * * ** * * ** * **** * ** ** * ** * * * *** * * 1800~1920: Scer.....: gattgat-gatttatttaaatgaatatatataaatatgtaaaaaagagttgatcaaagtaaataaatcagtacatgcatggcaaactctaaatgtatttatgttca-taactggcacat- Spar.....: gactaag-gatttatttaaatgaatatgtatgta-----agaaaagagttgatcaaaataaataaatcaatatatgcatcgcaaactctaaatgtatatatgacca-caactggcacatt Smik.....: .............................................................................................g.......................... Sbay.....: gattaaaagatttatttatatgaatatatatgta-----agggaaaatttgatcaagataaataaaccgatgtatgcatgacaagttgtataagtgtaagtaactaatgaccaatttgtt consensus: ** * * ********** ******** *** * * ** * ******** ******** * * ****** *** * ** * ** * * * ** * Spar_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 1920~1952: Scer.....: --------gcttttcttccttatgcggctctt Spar.....: ttaagtatgcttttcttctttatttggttcct Sbay.....: ttggattcacctttccttcttttttcccctct consensus: * **** * ** * * Spar_spli: DDDDDD { alias......: ['UBC9'] chromosome.: 4 description: ubiquitin-conjugating enzyme end........: 338069 exons......: [(1, 38), (149, 584)] gene.......: UBC9 introns....: [(39, 148)] length.....: 584 name.......: YDL064W plength....: 194 start......: 337486 tdist......: 337486 type.......: ORF up.........: 1 } Scer: 1 donors and 1 branches Spar: 2 donors and 1 branches Smik: 1 donors and 1 branches Sbay: 1 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 266), ('Spar', 266), ('Smik', 266), ('Sbay', 266)] ->[('Spar', 11)] ] [ ->[('Scer', 335), ('Spar', 335), ('Smik', 335), ('Sbay', 335)] ] 0~120: Scer.....: ------------------------ttcttctttccgtcaatact----tcggttcccacaatttgtaattctttcttcactttatatctctcagaaaccgcgtttaacatctggaaatta Spar.....: tacttcgtgttgtatgtctggcgtctcttcttttagttgatact----tcagttcccataatctgtaattctttcttcactttataccactcagaaaccgcgtttaacatctggaaatta Sbay.....: tactatagattgtatattctgtaattctctttccacttagacctaatccttaacttcttaaagtttatgtctctcttcactttataccactcagaaaccgcgt--aacatctagaaattg Spar_spli: DDDDDD 120~240: Scer.....: aaaattattcctgtctccataa-caaacatttaaa------aaaagaagagaaat--ttagcataggataagca--cacactggcaccatttttt---ggaagca-atATGAGTAGTTTG Spar.....: aaaattactctagtctccataa-caaacatttgaa------aaaagaagagaaaa--ttaaaacaggataagca--cacactggcaccatttatt---ggaggca-atatgagcagtttg Smik.....: ------------------------------ttgaa------aaaagaacagaaat--ttaa-acaagataagta--cac--tggcacaattttttattgggagaa-ttatgagtagtttg Sbay.....: aaaattattaagtccatgataaacaaacatttcaatacaacaataaaacgaaagtgcccaaagcaagatacgcatacacactggcaccagttatt---ggaagcagatatgagtagttta consensus: ** ** ** * ** ** * * **** * * *** ****** * ** ** ** * * ****** ***** 240~360: total....: ====== ======= Scer.....: TGTCTACAGCGTCTTCAGGAAGAAAGGTAAGTAGTAGTTTTCCTCCTTT-TATGCTTACATTCTGTAGGCATACACAA-TTTCATCCAGCGGT-ATACTAACAAATCGATGAACTTAACT Spar.....: tgtctacagcgtcttcaggaagaaaggtaagttgtggtttcctcttttt-tatgcttacaaaatgtaggcatacacaa-tttcattcagcggt-atactaacaaatcgatgaacattaaA Smik.....: tgtctacagcgtcttcaggaagaaaggtaagttgtggtttttctcttctctattcctacagtttacaggattgaacaa-cttcatttagcgga-atactaacaaatcaatgaacattaaa Sbay.....: tgtctacagcgtcttcaggaagaaaggtatgttgcggcttcctattttt---------cattttgtagctatacacaagtttaattcagcggtcatactaacag-tcattgaatatcaaa consensus: ***************************** ** * * ** * * ** * ** * **** ** ** ***** ********* ** **** * * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >============================================================================================= 360~480: Scer.....: TGTTTTACTTGAATAACAGAAAAAAATGGAGAAAGGATCATCCATTTGGATTTTATGCCAAACCAGTTAAGAAAGCTGATGGGTCCATGGATTTACAGAAATGGGAAGCTGGTATCCCAG Spar.....: TGTTCTACTTGAATGTCAGAAAAAAATGGAGAAAGGACCATCCATTTGGATTTTATGCCAAGCCAGTCAAGAAAGCTGATGGATCCATGGATTTACAGAAGTGGGAAGCTGGTATCCCAG Smik.....: tgtt-tactcaaataacaggaaaaaatggagaaaagatcatccgtttggattttatgctaaaccagtcaagaaatctgatggatctATGGATTTACAAAAGTGGGAAGCTGGTATCCCAG Sbay.....: tgttct-tttgaataacagaaagaaatggagaaaagaccatccatttgggttctatgccaaaccagtcaagaaggctgatggatctATGGACTTACAAAAATGGGAGGCTGGTATCCCAG consensus: **** * * *** *** ** *********** ** ***** ***** ** ***** ** ***** ***** ******* ** ***** ***** ** ***** ************* known....: =================>= 480~600: Scer.....: GCAAAGAAGGTACAAACTGGGCGGGTGGTGTGTACCCAATTACAGTCGAATATCCAAATGAATATCCTTCAAAACCTCCAAAGGTTAAATTTCCAGCCGGATTTTATCATCCAAACGTGT Spar.....: GCAAAGAAGGTACAAATTGGGCGGGTGGTGTATACCCAATTACAGTTGAATATCCAAATGAATATCCATCAAAGCCTCCAAAGGTTAAATTTCCGGCCGGATTTTATCATCCAAATGTGT Smik.....: GAAAAGAAGGAACGAACTGGGCGGGTGGTGTATACCCAATTTCAGTTGAGTATCCGAACGAATATCCATCAAAACCTCCAAAAGTTAAATTTCCAGCTGGATTTTATCATCCAAACGTGT Sbay.....: GTAGAGAAGGTACAAATTGGGCAGGTGGTGTATACCCGATTACAGTAGAATATCCAAATGAATATCCATCAAAACCTCCAAAGGTCAAGTTTCCGGCTGGGTTTTATCATCCAAATGTCT consensus: * * ****** ** ** ***** ******** ***** *** **** ** ***** ** ******** ***** ******** ** ** ***** ** ** ************** ** * 600~720: Scer.....: ATCCAAGTGGCACAATATGTTTAAGTATTTTAAATGAAGATCAAGATTGGAGACCCGCCATCACGTTAAAACAAATTGTTCTTGGGGTTCAGGATCTTTTAGACTCTCCAAATCCAAATT Spar.....: ATCCAAGTGGCACGATTTGTTTAAGTATTTTAAATGAAGATCAAGATTGGAGACCCGCCATCACGTTGAAACAAATTGTTCTTGGGGTTCAGGATCTTTTAGACTCTCCAAATCCAAACT Smik.....: ATCCGAGCGGCACAATCTGTTTAAGTATTCTGAATGAAGATCAAGATTGGAGGCCCGCCATCACGTTGAAACAAATTGTTCTTGGGGTTCAGGATCTTTTAGACTCTCCAAATCCAAATT Sbay.....: ATCCAAGTGGTACAATTTGTTTAAGTATCCTAAATGAAGATCAAGATTGGAGGCCTGCCATCACATTGAAACAAATTGTTCTTGGGGTTCAGGATCTTTTGGACTCTCCAAATCCAAATT consensus: **** ** ** ** ** *********** * ******************** ** ******** ** ******************************** ***************** * 720~840: Scer.....: CCCCTGCTCAAGAGCCTGCATGGAGATCATTTTCAAGAAATAAGGCGGAATATGACAAGAAAGTTTTGCTTCAAGCTAAACAGTACTCTAAATAGagggaat-ccatctttcccattctt Spar.....: CCCCTGCTCAAGAGCCTGCATGGAGATCATTTTCAAGAAATAAGGCAGAATATGACAAGAAAGTTTTGCTTCAAGCTAAACAGTACTCTAAATAGagggaaaaccagttttcccatcctt Smik.....: CCCCTGCCCAAGAACCTGCATGGAGATCATTTTCAAGAAATAAGACGGAATATGACAAGAAAGTTTTGCTTCAAGCTAAACAGTACTCTAAATAAagagatt--gagctctcccatcttt Sbay.....: CCCCTGCTCAAGAACCTGCATGGAGATCATTTTCGAGAAACAAAACGGAATATGACAAGAAAGTTCTGCTTCAAGCCAAACAGTACTCTAAATAGagagaaatttagttttcc-gtcctt consensus: ******* ***** ******************** ***** ** * ****************** ********** ***************** ** ** * * *** * ** 840~960: Scer.....: cctccttttgtactttatttaactaatgtcgttgtgtaacaaaaatagagcaaaataacattatttacaaattctcaaaaata---attttttgctctttgtttcttatgctaagtaaat Spar.....: tctccttttgtaatttatttaactaatgtcattttgtaacaagaatagagcaaa-taacattatttacaaatcctcaagaata---tttttgtgtcctttgttttttatgctaggtaaat Smik.....: cctctttatgtactttatttaactaatatcat-atgtaacaaaaatagagcaga-taacattatttgcaa-tcctcaaaagtac--tttttgtattctctgttt-ttatattaggtgaac Sbay.....: cctcgttttgtactttatttaatcaatgtcat-atgtaataagaatagagcaaa-tagcattatttgtggaacatgaagttccttattccttcaaatcttgttt-ttttgctagataaat consensus: *** ** **** ********* *** ** * ***** ** ********* * ** ******** * ** * * ***** ** * ** * ** 960~1042: Scer.....: agaaag--atattttttgtaccattttctataagtatggcaactat--------atacactttaataaat------------ Spar.....: agaaaa--tttttttttgtaccaatttctataagtatggcaactat--------atacaccttaattaat------------ Smik.....: agatat--actttcattgtaccaaaatctataagtaagacatctat--------atgcacctcaaaaagtt----------- Sbay.....: agaatactacttttattgtatcaatttctatggttgtgagagctattatattatatacacatcaacagatgtattgatttac consensus: *** ** ***** ** ***** * * * **** ** *** * ** * { alias......: ['RPL31A', 'RPL34'] chromosome.: 4 description: Ribosomal protein L31A (L34A) (YL28) end........: 322987 exons......: [(1, 57), (479, 763)] gene.......: RPL31A introns....: [(58, 478)] length.....: 763 name.......: YDL075W plength....: 254 start......: 322225 tdist......: 322225 type.......: ORF up.........: 1 } Scer: 2 donors and 1 branches Spar: 0 donors and 0 branches Smik: 2 donors and 2 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 736), ('Smik', 736)] ->[('Scer', 2484)] ->[('Smik', 319)] ] [ ->[('Scer', 1125), ('Smik', 1125)] ->[('Smik', 971)] ] 0~120: Scer.....: ttttatcttatattgtattgttacttctctcaaaaaaaaaactgcgagtaaattttcccttaccttcg---tactaaaataccgttatttgtcaaaacgctgtcatggaatt-ctatagc Smik.....: .cctatattattatggattatttcctttccctgaataaatattgc--gtaattctttctttattttctggtttttttgatattgttacgttaccaactactgtcgtaagatcgttatagc consensus: * *** **** ** *** ** * * ** * ** *** * *** **** * ** * *** *** * * *** **** * * ** ***** * ** ****** 120~240: Scer.....: acttgatgccggaatggagatgcttattcttgtgttctacattcatgaagtgctgatactatattttgttttcccgaacctctccccttctgggccctttttccattattcacaata-tt Smik.....: attaatcgcagaaatgatg-cgtttggcagtttagtctacactcataacatactgatgtcat-ttctgttttcccgaacttctcccctt-tgggccctatgtacaactataatgataatt consensus: * * ** * **** * * ** * * ****** **** * * ***** ** ** ************* ********* ******** * * ** * * *** ** 240~360: Scer.....: ttcatac-ctttacctccgtacaccaatctttatttttacccccatacctttgtattctgaaattgagaaatgatttgtggtgcttttttttttggacaatctgccttcgtggacagttt Smik.....: tccaaatacttttcttccgtacacca--ttttatttatacacccatacatattaaatt--gaattactgaat-acttccgtcagttttttttcctgaaaatttgtcgt-gaatagggcta consensus: * ** * **** * *********** ******* *** ******* * * * * **** *** * ** * ******** ** *** ** * * * * * * Smik_spli: DDDDDD 360~480: Scer.....: tgaaacgctaggcgacagttttgcaacggaaggaagtgggagagcccagaaaggctttctctcgatggtggatcattcttgcgcaggcggaggatgggaaagctccgttcaggtttgcgg Smik.....: tgggaaaccaaccagtggctttac-------ggtaagggaggcctctagggagagtcccacctagcaccagatcgagttgactaggcaggtggaaggaagagctccgtttaggttggcga consensus: ** * * * * * *** * ** * ** * * ** ** * * * **** * * * ** *** ** * ********* ***** *** 480~600: Scer.....: cttttctttctggcattttcgttctcccaactgcgcaggcagacatagcttgactttactcatgctcgcattaggcgggttgaatctcatagcttgaaagatagtattgaattatattga Smik.....: catttcttctcggcattgcgactctgccaactgcctaggctgacccagcatccacctgctcctactctcatcagtcgcgtggaaactcatagct-gaaagatagtattgaattatattga consensus: * ****** ****** *** ******** **** *** *** * * *** * *** *** ** ** ** *** ********* ************************* 600~720: Scer.....: agattttataactagtgataatttcattcaagttttaaagaaagaattaataagcaaacagaactcaatcaaaggaaaaATGGCCGGTTTGAAAGACGTTGTCACTCGTGAATACACCAT Smik.....: agatttta-aactaataataatttcagcttaatattagagaa-gaattgataagtaaacagaactcaatcaaaggaaaaatggccggtttgaaagacgttgtcactcgtgaatacaccat consensus: ******** ***** * ********* * * *** **** ***** ***** ***************************************************************** 720~840: Scer.....: TAACTTGCACAAAAGAGTATGTGAAAGAATAAAAATATAATGCCCAAGGGCTTGTCATCTGAATGGTT-AATTAAGAAGATATTTCTATAGTCAAGGAATACAATATCAAGAATTTGTAC Smik.....: taacttgcacaaaagagtatgtgaaaaaatacaattataatgtttaaag-------atttgaatggttcaactatgaggagatttctgatataagaaaccccagcgtgaataaattgctc consensus: ************************** **** ** ******* ** * ** ********* ** ** ** ** ****** * * * ** * ** ** *** * Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >======================================================================================================= 840~960: Scer.....: CACAGAAACCTATCAACAAAGATCATTGATCAAGATATATTTTATAATACGGAATTTGAAGACCATAATCAATATTATAACATCCAAGAGGGGAAAGATACACTTCGGCTGGACTTAAAG Smik.....: aataccaacccagtgtcgaataatattgatgaagatgtgtcttatgtccaaaaatc--aaaactaaaatcataactataactttcgagtaggagaagatatgttttggctgctcttgaca consensus: * * **** * * ** * ****** ***** * * **** *** ** ** * ***** * ****** * * ** ** ****** ** ***** *** * known....: ======================================================================================================================== 960~1080: Scer.....: AGCGATGAAGACAGAAATAGTTATCTTA--AATAGTGGAATCCTAGATTTTAAGTCGACAATTATCCATATCCCAAGTTTGACTAAATATGAATCAGAACAAATTGGGTCTCCAATATAC Smik.....: tgtgattaagatactaatagttttttttttgatagagaaaaccaaaagcgtgaattgacggttcagcatatctcaagtgtgat--gttagaaaagagagcaaaa-gagtctcaagtat-- consensus: * *** **** * ******* * ** **** * ** ** * * * * * *** ** ****** ***** *** ** ** *** **** * ***** * *** Smik_spli: BBBBBBB known....: ======================================================================================================================== 1080~1200: Scer.....: AAAACCATTCATCAAGATTACACTAATATTAAAATGAACAATCGTTACTAACAA-AAAATTTACCATTTT-ATTTTTAATAGTTGCACGGTGTCTCCTTCAAGAAGAGAGCTCCAAGAGC Smik.....: agaaccattcattgatagtatggcaatgc-gaaacgattaat-gttactaacaataaaatttaccatttttatttttaatagttgcacggtgtctccttcaagaagagagctccaagagc consensus: * ********** * * ** *** *** ** *** *********** *************** ************************************************* Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ================================================================================>= 1200~1320: Scer.....: TGTCAAGGAAATTAAGAAGTTCGCCAAGTTACACATGGGTACTGATGATGTCCGTCTAGCTCCAGAATTGAACCAAGCTATCTGGAAGAGAGGTGTCAAGGGTGTTGAATACAGATTAAG Smik.....: tgtcaaggaaattaagaagttcgccaagttacacATGGGTACTGATGATGTCCGTCTAGCTCCAGAATTGAACCAAGCTATCTGGAAGAGAGGTGTCAAGGGTGTTGAATACAGATTAAG consensus: ************************************************************************************************************************ 1320~1440: Scer.....: ATTGAGAATTTCCAGAAAGAGAAACGAAGAAGAAGACGCCAAGAACCCATTGTTCTCCTACGTTGAACCTGTCTTAGTTGCTTCTGCCAAGGGTCTACAAACTGTTGTTGTCGAAGAAGA Smik.....: ATTGAGAATTTCTAGAAAGAGAAACGAAGAAGAAGACGCCAAGAACCCATTGTTCTCTTACGTTGAACCTGTTCTAGTTGCTTCTGCCAAGGGTTTACAAACCGTTGTTGTTGAAGAAGA consensus: ************ ******************************************** ************** ******************** ******* ******** ******** 1440~1560: Scer.....: TGCTTAAatcaattaaataa------aaataatactcattttatattaataaatataaagtaaacattttcgatttgtataaatctcttgtactcaagccaagacttctgtattca-ttg Smik.....: TGCTTAAatcaattaaataatatcaaaaataatactcattttatattaataagtataaattaaacattttcgatttgtataaatctctgtt--tcgggccaaa--ttttgaatcaagtta consensus: ******************** ************************** ****** **************************** * ** ***** ** ** ** * ** 1560~1680: Scer.....: aagcggggcactca------gatcaatttttatcaatgatatcatctgctacgcttgtacaaagggttaccttcgaat-tatttaaaagatgcaagtctacgtataag------tgaagg Smik.....: gagaagaactcttatcttttgaacgaaggacttca-tgattttacttactacgcccagataaacagatatctccagatatatttaaagggtccaagcctactcataagaatttttgaatg consensus: ** * * ** * ** * * *** **** * * * ****** * *** * ** ** * ** ******** * * **** **** ***** **** * 1680~1800: Scer.....: cgata--aaaatggataaatcagtgtaactatgactataaggttatgttggccactcatcacattaaaagactcccaatattctccaacagaaacgaagtataccgtgcgtctgattatg Smik.....: caatagaaaaatggataaatcagtgtaactatgactataaggttatgttggccattcatcacattaaaagactcccaatattctccaacaaaaatgaagtatacttagcatctgatcacg consensus: * *** *********************************************** *********************************** *** ********* ** ****** * * 1800~1920: Scer.....: gtccaccagaacgatgagatcataaagacacaaagtaaatgagaagttttacaatattgaaaaaatactgtaaaaggatggtcttaaaaagtagttttgaagtacttctgttcttaatag Smik.....: acacatcagaacgatgacatcataaagacgcagagtaaatgagaagttttgcaatact--agaaatactgtaaaaggatggtcttaaaaagtagttttgaagtacttctgttcttaatag consensus: ** *********** *********** ** ***************** ***** * * ********************************************************** 1920~2040: Scer.....: accaacggaaaattaaaatcttcatcattaaaa---gtccataattcattcgctttcagcaaaacatagagcagcaagaagctaaagaaatgacaagaactatcggcagagtgaactcac Smik.....: accaacggaaaattaaaatcttcatcattaaaaaaggttcatatctcatttgcattcattagaacgtaaaatagcaagagactaaagaaatggaaaagactatcggcagagtgaactcac consensus: ********************************* ** **** ***** ** **** * *** ** * ******* *********** ** ********************** 2040~2160: Scer.....: tataccattaatcttatcacccgtttataaatctattcttgtcctttccagttgatatgattctgctattatccttgttccccccaaggactgcagtagaagagttatgttacaaatgtt Smik.....: taaaccgttaatcttataaccagtttctcattccgtctttgtctttc---------aggaattcggcatatatcttatt-------agtacacca--agtgcgttcgcattataaatgtt consensus: ** *** ********** *** **** * * ** * ***** ** * ** * * ** *** ** ** ** ** ** * *** ******* 2160~2280: Scer.....: gatatatatatatatatatatat---atatatatgtatggacatttgtgatgaaaatatatcttgaaca-agcgcgattaaggtcataataaaaaa-tcacagaaaatttttcaggtcgc Smik.....: caataatagacgggtttgtggattttattttgatatttatatactttttactaggatatttatcagatttattaaagataaattcctcatatcagactcatagaaaattttttagtttgc consensus: * *** * * * * ** ** * ** * * * * ** * * * **** * * * * *** ** * *** * * *** *********** ** * ** 2280~2400: Scer.....: gggcgttctctcacccggccgcccaaagtattatatgaatctttagggcttgtaggaattatcagcatgatatgtacaattagagtttttctttggaaacatgcgacagtagacgtcact Smik.....: gtccgctctctcacccggacgcc-aaattttcatctaaatatttagggctaataggattgatgagc...................................................... consensus: * ** ************ **** *** * * ** * *** ********* ***** * ** ********************************************************* 2400~2520: Scer.....: ctttgattcagaagttaggctaggatgtacgcaaataaaataaaagcaatgacaaaactagatttacatatattatatgtatatgtatgtggaggatataacacaaacagtggaaaagtg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2520~2535: Scer.....: gtagaataattagta Smik.....: ...........ag.. consensus: *************** { alias......: ['MRK1'] chromosome.: 4 description: MDS1 related protein kinase end........: 314747 exons......: [(1, 412), (705, 1798)] gene.......: MRK1 introns....: [(413, 704)] length.....: 1798 name.......: YDL079C plength....: 599 start......: 312950 tdist......: 312950 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 3 donors and 1 branches Smik: 4 donors and 3 branches Sbay: 7 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1105), ('Spar', 1105), ('Smik', 1105), ('Sbay', 1105)] ->[('Scer', 2608), ('Spar', 2608), ('Smik', 2608)] ->[('Sbay', 153), ('Sbay', 159)] ->[('Scer', 2723), ('Smik', 2723)] ->[('Sbay', 71)] ->[('Sbay', 1531)] ->[('Sbay', 2301)] ->[('Sbay', 2537)] ->[('Scer', 1214)] ->[('Smik', 2738)] ->[('Spar', 2408)] ] [ ->[('Scer', 1409), ('Spar', 1409), ('Smik', 1409), ('Sbay', 1409)] ->[('Sbay', 1568)] ->[('Scer', 388)] ->[('Smik', 1206)] ->[('Smik', 1457)] ] 0~120: Scer.....: -gctacttcaatttttatatttttctta-actctatactcctttgtatcttgact-catatc-gttgtataatgt--ttcgcttactatgatat-tttatactcaagtaaattgaaggaa Spar.....: -gctacctcaggttttat-tttctctta-aatctatattcatttatatgtcgcct-catatctcctgtgtaattt--tttactcacaatgatatcttcatcttcaagtcaattgaaggga Smik.....: -gccacctcgttttttat-tttttctga-gctct---cttcactacacgt---cc-tatatattttgtatatttt--tctgtttattatgatatttttatattcaagctaagtggacgac Sbay.....: gtctcctcccctcattctctctctcctatactcctatatccgtcgtatatatcctaaatattttctacatagtatgatttcgttctattcatattcctct-caaaagcaaaccaaagcaa consensus: * * * ** * * * ** * ** * * * * **** * ** * * * * * **** * *** ** * Sbay_spli: DDDDDD 120~240: Scer.....: aggaaaccatatcctcctagtggctgcgctgcactacgccgctatgaccaattccgctatgaccagtttacctttaccacactcactccac-gatgttt---taagcgttccttgtcaaa Spar.....: attgaa-aataccctaccaatggctgcactgcaccatgccgctatgacaaa---------------tgtgcctttactgttggcaccccac-gatatct---taaacgttcttcgtcaaa Smik.....: aggaa--catgccattataacggtagcact--attcagctgctttcattgt----------gttgatgtgcctttaccgtgggt-ccccac-gaaatttttctaaacgtcctccgtcaaa Sbay.....: agcag--cgaactttgccaatgactgcactgcagtatgcgtatgcgt-------------------tctatggtagacatagtccacacactgacatcctcgcccagaatgcaagagaac consensus: * * * * ** ** * ** * * * * *** ** * * ** Sbay_spli: DDDDDDDDDDDD 240~360: Scer.....: tatgcaccatctcgtgatttttcaaagattggtaaaggaacatgaaaaaaaaa------aagcgggggggtggggaaaatagagttgattctgcaaaagagaaa-gacaaaggccg---- Spar.....: tatgtaccatctcgtgattttctaaagattggtaaaggaacatga--aaaaaa------aaggcggggggtggggaaaatagagttgagtccgtaaaagagaaaggacaaagaccaccac Smik.....: tgcgtattatctcgtgatttct--aaagctggtgtaggaacatga-aaaaaaa------aggcggggggccggggaaaatagagttgagtctgtaaaagaggaagcatacctgctaccca Sbay.....: ccttaaagctcgtgtgattcga-aaagactgatata--agcatgaaaaaaaaatgttttagaggcgggggcggggaaaatagagttgaggccgtaaaagagaagggactgacgc------ consensus: * ** ****** ** ** * * * ***** ****** * **** ***************** * * ******* * * * 360~480: Scer.....: cccctgggagcaaagtcgtccgatgagga------actaaccaggggcagcattatccgtt-aggatctaccggagagctgttcc----------------agcggcggatctgagaaag Spar.....: ccctggggggtagactcgtccgatgagga------accaaccaggggcagttttatccgct-aggatctaccggagagctgttcc----------------agctgcggatctgggaaag Smik.....: ggaaaaggggcagagtcgttcgatgaaga-----gaccaaccaggggcagtattatcc-tt-aggacctaccggagaacagcctc----------------agctgtgcttgggagaagg Sbay.....: accccaggggcagagtcgtccgatgagggaccacaataggacaggggctgtgttgtccgttaaggatgtaccggagtgctggttcgctcctgattcgtcaggtcagcagatctgggatac consensus: ** * * * **** ****** * * ******* * ** *** * **** ******** * * * * * * * ** Scer_spli: BBBBBBBBBBBBB 480~600: Scer.....: attggttctccttttgtcgctatatcttgcaac-ttaaataagcattctctaaaaaa------------tactggtgctataagaaccctgctgcatac-aagtatttccgtttctacca Spar.....: agt-gttctccttttgttgttgtatcttgtaac-ttaaataagcattctctaggaaa------------tactggtactataagaaccctgctgcatgc-aattatttctgtttctgcta Smik.....: aac-gctctccagtcgtgattctatcttgcaac-ttaaataagcattcttaagataa------------tagtgatactataagaacccacctgcttac-atttgtttttggccttacta Sbay.....: agt-gttctctctttgttcttatgtctagcaactttaaaaaagcattttccagggaactctccaggaactcgtaatcttataagagcctcgctgcacgcgacttatctttgcttctatt- consensus: * * **** * ** * * *** * *** ***** ******* * * ** * * * ******* ** **** * * * * * * * 600~720: Scer.....: tactgcggggaagggacttgaaaata-atctcaagattgaagaggtga----------------aaattgtaaaatagtctactATGACCGATGTGTTGAGAAGCCTAGTGCGAAAGATT Spar.....: tattgcggggaagggactttaaaata-atcacaagactgaagaagtgaaaatagtgaaatagtgaaatagtgaaatagtctactATGACTGATGTTTTGAGGAATCTGGTGCGAAAGATT Smik.....: tatagtggggaa-----ttggaaatatattcgaagacagaaagagta-----------------aaattgggaaataatctactATGACTGATGTTTTGAGGAATCTAGTCGGAAAGATA Sbay.....: --tcgaggggaattgagaacaaaaaattcttggaacccaagatagata----------------aaactg-aaaacatcctgctATGGCTGCTGTTTTAAAGAGTTTTGTGCGGAAAATT consensus: * ****** *** * * * * *** * *** * ** ***** * * *** ** * * * ** * ** ** 720~840: Scer.....: TCCTTCAATAACTCAGATAACCTTCAGCTAAAACACAAGACATCTATACA---------GAGTAATACTGCCCTAGAAAAGAAGAAGAGAAAGCCTGATACAATCAAAAAGGTAAGCGAC Spar.....: TCCTTCAGTAACTCAGATAATCTTCAGTTAAAACATAAGACTTCTATACA---------GAGTAATACCGCACTAGAAAAGAAGAAGAGAAAGCCTGATACGGGTAAAAAGGTAAGCGAG Smik.....: ACCTTTCGCAATTCAGACAACCTACAGTTAAAACATAAGACTTCTATACAGAGCACGACGAGTAATACCGGACAGGAAAAGAAGAAAAGGAAATCGGAAACGGGGGAAAAAGTAGAGGAT Sbay.....: TCGTTTGGCAATTCAGATAGTCTGCAACTGAAACATAAGACTTCTATACAGAGTAACACGAGCAACACCGGGCTAGACAAGAAGAAGAGGAAGCCTGGAA------AAGAGCCAGACAAG consensus: * ** ** ***** * ** ** * ***** ***** ******** *** ** ** * * ** ******** ** ** * * * ** * * * 840~960: Scer.....: GTTCAAGTTCACCATACTGTACCTAATTTCAATAACAGTTCAGAGTACATCAACGACATAGAGAATCTTATAATATCTAAACTGATAGACGGGGGAAAGGAGGGTATTGCAGTTGATCAC Spar.....: GTTCAAGTGCACCATAGTATACCTAACTTCAATAACAGCGCGGAGTACATCAACGACATAGAAAATCTTATAATATCTAAACTGGTAGACGGGTGTAAAGAAGGTATCGCAGTTGATCAT Smik.....: GTAAAATTGCACCATGACATACCGAACTTCAATAACAGTGCGAAGTATATCAACGACGTAGAGAATCTTATAATTTCTAAACTGATAGACGGTGGTAAAGAAAGTATTGCAGTTGATCAT Sbay.....: ATCCCAGTACACCATAGAATTTCTAATTATAATAACAGCGCCGAGTACATTAGCGACATAGAAAACCATATAATATCGAAGCTACTAGACGCTGATAAAAAAGGAATCACTGTTGACCAT consensus: * * * ****** * * ** * ******** * **** ** * **** **** ** * ****** ** ** ** ****** ** * * ** * ***** ** 960~1080: Scer.....: ATTGAACACGCCAATATCTCGGACAGTAAAACAGATGGAAAAGTTGCCAATAAGCACGAAAATATTAGTAGCAAGCTTAGTAAAGAGAAGGTTGAGAAAATGATTAATTTTGATTATAGG Spar.....: ATTGAGCACGTCGATACCTCGGACAGCAAAACAGATGAAAAAGTCGTCATTAAGCAAGAAAACATCAGTAGCAAGCTTAGCAAAGAGAAAGTTGAGAGAATGATTAACTTCGATTATAGG Smik.....: ATTGAGCACGTTGATATTTCGGACAGAAAAACGGATGAAAAAGTAGTCGGTAAAAAAGAAAGTATCAGTAGCAAACTCAGTAAAGAGAGAGTTGACAGAATGATTAATTTCGACTATAGG Sbay.....: ATTGAACACGTCGATATTCCGGACACCAAGGCAAATGAAGAAAAAGACGTTAAACAAGAAAACATCAGTACCAAGCTTGATAAAGAGAGGATAGATAGAATGGTTAATTTCGATTATAGA consensus: ***** **** *** ****** ** * *** * ** * * *** * **** ** **** *** ** ******* * ** * **** **** ** ** ***** 1080~1200: total....: ====== Scer.....: TATATTAAAACCAAGGAAAGGACTAGTATGTATAATTATTTTTTATTTTTTTTTTTTATGTTCTTGCCAGTGGAGGAATGTTTCTTTCGTCACAACCGGAGTGAATAGTGGAAC------ Spar.....: TATATCAAAACGAGGCAAAGAACAAGTATGTGTACCCAATTTT-----TTTTTTTTTAGTCTCTTGCCAGTGGAGGAATGTTTCCGTGGTCGCAACTAGAGTGAAAACCGGAACCCCGTC Smik.....: TATAACAAAATCAAGCAAAGAATTCGTATGTACGGCC----------TGTAATTTTCAGGTTCTTGTCAATGGAAGAAGGTTCAATTGGTAAAATCTCGATCAGTACTCGGAAATTACCC Sbay.....: TATCTCAAATCCAAGGAAAGAACACGTATGTACCACCCGT-------TAATCGGCTTAGGTTTTCGTTAGAGGAAGAAGTTTCACAACTAAGATAATACTGAGGCCATTTCACCATTATG consensus: *** *** * * **** * ****** * * * * * * *** *** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >============================================================================================== 1200~1320: Scer.....: ----------TACTGTCAGTTCATAGTA-TCGCGACACAAAAAAAAATAA---------TTAAAAGAAAAAAAAAGAGAGTGTAAAA-TAAAGATTTATGAAATTGCATCCCTAATCTTA Spar.....: AAGTTTCTTTTATTGTCAATTATTAGTATTCGCGACACAAAAAAAAATAG---------TGAAAAGAA----AAAGAGAGCGTACAA-TTACA------GACATTGTATCCCTAATCTTA Smik.....: CAGTATCACTAACTACCAA-CAGTGAAATATGCGACACAAAAACAAACAAACTGCAAATACAAATAAAAAGAAAAAAAAGAACAAAGCTTACAAGTACAGAGATTGCATCCCTAATCTTA Sbay.....: CCGTACCTTGCACTTGAAAGTAATTATATTCGCGACACAAAAAATACAAAA--------ACAAAAGAAA--GAAAAAAGGCATATAA-TTACAG----ACACACCGAATCCCTGATCTTA consensus: * * * * * ************ * * *** ** *** * * * * * * * * * ****** ****** Scer_spli: DDDDDD Smik_spli: BBBBBBB known....: ======================================================================================================================== 1320~1440: total....: ======= Scer.....: GAAACTTGCTTACGAAATATCAGGAAGCATAGCGGAA-CATTTTTCCATATTACAT-CAACTACCATTTTTTATGGGAATCACATTATATACTAACATAGGTTTAGTTCATAAACGGGTT Spar.....: ACAACACGCTTACCAAATATTAGGAAA-ATACAGGAA-CATTCTTCCATATTTTACGGAACCACCA-TTTTTATGGGAATCAGATCATATACTAACATAGGTTTAGTTCATAAGAGGGTT Smik.....: GTAACAAGATTATTATACAGGAAAAAA-ATACAAGAA-CATTCTTCTATACTTCATGCAACTACCATTTTTGATGGGTATCAAAACATATACTAACGTGGGTCTAGTTCATAAAAAAGTT Sbay.....: GTGACAACTCGACCA-ATAAAAGCGGG-ATACCCGAATTATTCCTCCAATTTTTAA-CACCTATCA-TCTTTATGGATATTGAAACGTATACTAACAAAGGTTTAGTTCATAAAAAGGTC consensus: ** * * * * * *** *** *** ** * * * * * * ** * ** **** ** * ********* *** ********** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ========================================================================================================>= 1440~1560: Scer.....: TATAAACATGACCGCAAAACTGATGTCGACCGAAAAAATCATGGAGGAACTATCGACATCAGTTATCCTACGACAGAAGTGGTTGGCCATGGTTCATTTGGTGTTGTAGTCACGACTGTA Spar.....: TATAAACATGACCACAAAACTGACGCCGACAAAAAGAATCGCGGAGAGACTATCGATATCAGTTATCCTACGACAGAAGTGGTTGGTCATGGTTCATTCGGTGTTGTAGTTACGACTGTA Smik.....: TATAAACATGACCACAAAACTAACGCCGACAAAAAGAACCATGGAGGAACTATAGATATCAGTTATTCTGCGACAGAAGTGGTTGGTCATGGTTCATTTGGTGTTGTGGTCACTACAGTG Sbay.....: TATAAACACGAGCACAATGCCGATGTCGACAAAAAGAGCAGTGAAGAAACCGTAAATATCAGTTATCCTGCAGTAGAGGTGGTCGGCCATGGTTCGTTCGGCGTTGTGGTTACCACTGTG consensus: ******** ** * *** * * * **** *** * * ** ** * * ********* ** * *** ***** ** ******** ** ** ***** ** ** ** ** Smik_spli: BBBBBBB Sbay_spli: DDDDDD 1560~1680: Scer.....: ATAATTGAGACCAATCAAAAAGTTGCCATAAAGAAAGTACTACAAGATAGAAGATATAAAAATAGGGAGCTCGAAACTATGAAGATGTTGTGCCATCCAAATACTGTGGGTCTACAGTAC Spar.....: ATAATTGAGACCAATCAAAAGGTCGCCATCAAAAAAGTATTACAAGATAGAAGATATAAAAATAGAGAGCTGGAGACCATGAAGATGTTGTGCCATCCAAATACTGTAGGTCTGCAATAC Smik.....: ATAATCGAGACTGAACAGAAAGTTGCCATCAAAAAAGTATTACAGGATAAAAGATATAAGAATAGAGAACTTGAGACGATGAAGATGTTGCGCCATCCAAATACAATAGGCCTACAGTAT Sbay.....: ATAAATGAGACTAACCAAAAAGTGGCCATCAAAAAAGTGTTGCAAGATAAAAGATATAAAAACAGAGAACTGGAAACCATGAAATTATTGAACCATTTGAATACAATAACCCTAAAGTAC consensus: **** ***** * ** ** ** ***** ** ***** * ** **** ********* ** ** ** ** ** ** ***** * *** **** ***** * ** * ** Sbay_spli: BBBBBBB 1680~1800: Scer.....: TACTTTTACGAAAAGGACGAAGAAGATGAAGTATACCTCAATCTGGTTTTGGACTACATGCCTCAGTCGTTATACCAAAGGCTTCGTCATTTTGTTAATTTGAAAATGCAGATGCCGCGT Spar.....: TACTTTTACGAAAAGGATGAAGAGGACGAAGTATATCTCAATCTGGTTTTGGATTACATGCCCCAGTCATTATACCAGAGGCTCCGTCATTTTGTTCACCTGAAAGTGGATATGCCACGT Smik.....: TATTTCTACGAAAAGGACGAAGAAGACGAAGTATACCTCAATCTTGTTTTAGACTACATGCCTCAATCATTATACCAAAGGCTTCGTCACTTTGTCCATTTGAAAACCGAGATGCCACGT Sbay.....: TATTTTTATGAAAAGGACGAAGAAGACGAAGTCTACCTCAATTTGATTTTAGACTACATGCCCCAATCATTGTACCAACGGCTTCGTCATTTTGTCCATTTGAAAACCCAGATGCCCCGT consensus: ** ** ** ******** ***** ** ***** ** ****** * **** ** ******** ** ** ** ***** **** ***** ***** * ***** * ***** *** 1800~1920: Scer.....: GTTGAAATTAAATTCTATGCATACCAACTATTCAAAGCTTTAAACTATTTGCATAACGTTCCTCGAATCTGTCACAGAGATATAAAACCGCAAAACCTACTGGTGGATCCGACAACTTTT Spar.....: CTTGAAATTAAATTCTACGCATATCAACTATTCAAAGCTTTAAATTATTTGCATAATGTTCCTCGGATTTGTCACAGAGATATAAAGCCACAAAATTTACTGGTAGATCCAACCACATTT Smik.....: CTAGAAATTAAATTTTATGCATATCAACTATTCAAGGGTTTAAATTATTTGCATAATGTTCCCGGGATATGTCATAGAGATATAAAACCGCAAAATTTACTGGTAGATCCGGCGACATTT Sbay.....: CTAGAGATCAAATTTTATGCGTATCAACTGTTCAAAGCTTTGAATTACTTGCATAATGTTTCCCGAATCTGTCATAGGGACATAAAACCACAGAATGTACTGGTGGACCCCAAAACATTT consensus: * ** ** ***** ** ** ** ***** ***** * *** ** ** ******** *** * * ** ***** ** ** ***** ** ** ** ******* ** ** ** *** 1920~2040: Scer.....: TCTTTCAAGATTTGCGATTTTGGCAGTGCCAAATGCTTGAAACCGGATCAGCCTAATGTGTCTTACATCTGTTCAAGGTACTATAGGGCTCCCGAACTCATGTTTGGTGCCACTAATTAC Spar.....: TCTTTCAAGATTTGCGATTTTGGCAGTGCGAAATGTCTGAAACCAGACCAGCCCAATGTTTCTTACATCTGTTCAAGGTATTATAGGGCCCCTGAACTAATGTTTGGTGCCACTAATTAC Smik.....: TCTTTCAAGATTTGCGATTTTGGCAGCGCCAAATGTTTGAAGCCAGACCAGCCCAACGTGTCTTACATTTGTTCAAGGTACTATAGAGCTCCTGAACTAATGTTTGGCGCCACAAACTAC Sbay.....: TCATTGAAAATCTGCGATTTTGGTAGTGCCAAGAGTTTGAAACCAGATCAACCTAATGTGTCGTACATCTGTTCGAGATACTATAGGGCTCCTGAATTAATGTTCGGTGCCACCGATTAC consensus: ** ** ** ** *********** ** ** ** * **** ** ** ** ** ** ** ** ***** ***** ** ** ***** ** ** *** * ***** ** ***** * *** 2040~2160: Scer.....: TCAAACCAGGTC-GACGTGTGGTCAAGCGCTTGTGTCATTGCTGAGTTGCTTTTGGGCAAGCCCTTGTTCTCTGGTGAAAGCGGTATAGATCAGTTGGTGGAAATTATTAAGATAATGGG Spar.....: TCAAGCCAGGTC-GACGTGTGGTCAAGCGCTTGTGTCATAGCTGAATTGCTTTTGGGCAAGCCCTTATTCTCTGGTGAAAGCGGTATAGATCAGCTAGTAGAAATTATCAAGATAATGGG Smik.....: TCGAACCAAATC-GACGTGTGGTCAAGTGCCTGTGTCATAGCTGAATTGCTTTTGGGCAAGCCCTTGTTCTCTGGCGAGAGTGGTATAGATCAGTTAGTGGAAATCATCAAGATAATGGG Sbay.....: TCGAACCAAATCGGACGTATGGTCAAGCGCTTGTGTCATCGCCGAATTGCTCCTGGGCAAGCCCTTATTCCCCGGTGAAAGTAGTATAGATCAGTTGGTGGAGGTTATCAAGATAATGGG consensus: ** * *** ** ***** ******** ** ******** ** ** ***** ************* *** * ** ** ** *********** * ** ** * ** *********** 2160~2280: Scer.....: CATACCCACAAAGGATGAAATTTCAGGAATGAACCCAAATTATGAAGACCATGTTTTCCCCAATATCAAGCCCATTACTTTGGCTGAAATATTCAAAGCCGAAGATCCCGATACTCTTGA Spar.....: CATACCCACAAAGGATGAAATTTCAGGAATGAACCCGAATTATGAGGATCACATTTTCCCCAATATTAAGCCCATTACTTTGACTAAAGTTTTCAAAGGCGAAAATCCCGATATTCTTGA Smik.....: CATACCTACAAAGGATGAAATTTCAGGAATGAACCCCAATTATGAAGATCATATTTTTCCCAATATCAAACCAATTACTCTGGTTGGAGTCTTTAAGGAGGAAGATCCTGATGTTCTGGA Sbay.....: AATACCCACAAAGGACGAAATCTCGGGAATGAATCCAAACTACAAGGACCATATTTTCCCCAACGTCAAGCCCGTTACTTTGGCTCGACTATTAAAGGGCGAAGACTCTGATGCTCTTGA consensus: ***** ******** ***** ** ******** ** ** ** * ** ** **** ***** * ** ** ***** ** * * * ** ** * *** * * *** *** ** 2280~2400: Scer.....: CTTGTTAACAAAAACTCTGAAGTATCACCCTTGCGAAAGATTGGTACCTCTACAATGTCTATTATCAAGCTATTTTGACGAAACCAAACGTTGTGATACCGACACTTACGTAAAAGCACA Spar.....: CTTGTTAACAAAAACTCTGAGGTATCACCCTTGCGAAAGATTAGTACCTTTGCAATGTCTATTATCAAGCTATTTTGACGAAATTAAACGTTGTGATACTGATGCTTACGTAAAAGCACA Smik.....: ATTGCTCACAAACACTCTAAGGTATCATCCCTGCGAAAGATCCACACCTTTAAAATGTCTACTATTAAGCTATTTTGACGAAATCAAACGCTGTGACACTGACGCTCATGCCAAAGCACA Sbay.....: ATTGCTATCGAAGGCTCTCAGGTATGACCCTCGCGCAAGATTGCCTCCTCTACAATGTCTACTTCTAAAGTATTTTGATGAAATCAAAATACGTGACACTGATGCCTACGCAAAAGCACA consensus: *** * * ** **** * **** * ** *** ***** *** * ******** * ** ******** **** *** **** ** ** * * * ******** Sbay_spli: DDDDDD 2400~2520: Scer.....: AAACCTGCGTATATTTGACTTCGACGTGGAAACTGAGTTGGGCCATGTTCCACTTGTGGAACGGCCCGCCATTGAAGAACGGTTGAAACATTTTGTTTCTGCACCTTCATCGTCTTT-GT Spar.....: AAACCTGCGTATGTTTGACTTCGATGTGAAAACCGAGTTAGGTCATGTGCCACTTGTGGAACTGCCTACCATTGAAGAGCGGTTGAAACATGCCGTTTCTGAACCTTCATCGTCTTT-AT Smik.....: ATATCTACGTATATTCGACTTCGATGTGAAAACAGAATTAGGCCATGTACCATCTGTGGAGTTGTCTACCACCGAGGCACAGTTGAAATATCCAGTTACTTGAgctatattgtctttcgt Sbay.....: ATATTTGCGTATATTTGACTTCGATGTACAAACAGAATTAGGCCATGTGCCACCTGCTGACTTGTCTACCATTGAAGTAGCCTTGAAACAACCCGTTTCCCAAGCTTTAACGTCCTT-AT consensus: * * * ***** ** ******** ** **** ** ** ** ***** *** ** ** * * *** ** * ****** * *** * * ** * *** ** * Spar_spli: DDDDDD 2520~2640: Scer.....: GAtatatctcatccttcaaatttcttagtctattgtatcattactattacataatatgcatttgtcttctgcacacagatacaca-gcgtatgcagttaacctaacgtataacgaccgtc Spar.....: GAtgtactttacc--tccaatatcttagtctattgtatcattactattacataatatgcatttgtcttctgcacacaaatatata-aggtatgcagttaatctaacgtataatgaccgtc Smik.....: ggtatacctcatc-atcttatatcatcgtgtattgtatcattactattacataatatgcatttgtctcctgcgtacctatataca-gcgtatgcagttaaatcaacgtataatgaccgcc Sbay.....: GAttt-ttttacctattgtatgtcttcatgtattatatcaatattattacataatatgcatttcccttctgcacatacacatatatatatatgcagtttacttaacgtataatgaccgcc consensus: * * * * * * * ** ** * * **** ***** ** ******************* ** **** * * * * * ********* * ********* ***** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2640~2760: Scer.....: ctctttccttc----------atttaatttcacttgctgcttttctaggca-gcggtcgcccaaattttcaccggccacaagcgtatgactgcatatg----cagaaccttggcaactgt Spar.....: ctctttccttc----------attcaatttcacttgctgcttttctaggca-gcggtcgcccaatttttcaccggacacttgcgtttgactgcatatg----gagaaccttggcaactgt Smik.....: ttctttccttc----------attgtattccacttgctgcttttctgggca-gcggtcgcctaaattttcatcggccacctgcgtatgactgcatatggtgagtgaaccttggcaactgt Sbay.....: ttctttccttctctccaacaaatttgactcaacctgctgcttttctaggcatgcggtcg------ttttcatcggccgcttgtctatggctgcatga-----tggaatcttggcaactgt consensus: ********** *** * * ** ************ **** ******* ****** *** * * * * ** ****** *** ************ Scer_spli: DDDDDD Smik_spli: DDDDDD DDDDDD 2760~2880: Scer.....: aagaactcctatgtttctttattgcaaacagttgctaaaagcactcac-atagaagaaaaattgatgaaacttgcgatgcattgaacaaatttccctttcttcatactttacggcatagt Spar.....: aagaactcctatgtttcttcatttcaaacagttgcaaaaagcattccc-atagaagagaagttgatgggacttgcaatgcattgaacaaatttccgtttcttcatactttacggcataat Smik.....: aagaactcctatgtttcttcattgcaaacagttacgaaaagcatttccgatagaagagagtttgatgagacttgcaatgcactgaac-tgtttccctttcttcatactccacggcata-- Sbay.....: aagaactccaggctctctttagtgcaaatagttgtgaaaagcacttcccgtcaaa-aaagattgatgcgacttacaatgcattgaat-aggttcccattcaccatacttt-tagcgtaa- consensus: ********* * **** * * **** **** ******* * * * ** * * ****** **** * ***** **** **** *** ****** ** ** 2880~3000: Scer.....: aatctttgaaccttttggtaagcaccaaattcgtaattcattatcgatattgtgtagaaaagagtaaaatataataaaacgaaaaaaaaaaggtttgaaagaacataactactaaaacgc Spar.....: aatctctgacctttttggcaaacaccaaattcgtaattcaatatcaatcctgtgtaaaaaagagtaaaatattacaaaacgaaaaaaaaaaaggtaggaagaacataaataccaaaacgc Smik.....: aatttttgaatatactggcgaacacaaaaattgtaa-tcagtatcaatcctgtgcagaaaagagtgaaatacaacgaaacgaaaaaaaaaaaggtagaaagaacata-----ccaaatat Sbay.....: -----ttgattatattggcggagaccaaaatcgtaatacaataaaagctctgtgtaaaaaagagtagatt-------cactaaaaaaaaaaaggtaggaataacataagca-ccaaccgc consensus: *** * *** ** *** * **** ** ** **** * ******** * * ** ********** * * * ** ****** ** 3000~3018: Scer.....: accgtcgtcattctgaag Spar.....: actgtcatcattctgaag Smik.....: actgctgtcgttttgaag Sbay.....: attgccgtcattatattg consensus: * * ** ** * * { alias......: ['RPL13A'] chromosome.: 4 description: Ribosomal protein L13A end........: 309387 exons......: [(1, 4), (370, 965)] gene.......: RPL13A introns....: [(5, 369)] length.....: 965 name.......: YDL082W plength....: 321 start......: 308423 tdist......: 308423 type.......: ORF up.........: 1 } Scer: 2 donors and 3 branches Spar: 0 donors and 0 branches Smik: 4 donors and 2 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1051), ('Smik', 1051)] ->[('Scer', 1602)] ->[('Smik', 144)] ->[('Smik', 596)] ->[('Smik', 712)] ] [ ->[('Scer', 1375), ('Smik', 1375)] ->[('Scer', 966)] ->[('Scer', 1745)] ->[('Smik', 370)] ] 0~120: Smik.....: gttagtaaaataaattcaaagtttcctgttgtaaatgcacatgaattgtatagcttggaaaatatgaaggcccttctggcacaatagcgtgcgaagtctcctttttatagttcaattcaa 120~240: Smik.....: tggagtcaacataacagtcacagagtatgcccataaaaaatatctacttcgcacaaatagattaaaataaatattcccctatatgatctgcatgatgttcccgactggcaagtaatgttg Smik_spli: DDDDDD 240~360: Smik.....: cactgttatccatgtttctaatctaatcaatctcgccatttttttgttcaattagccctgtttttaggtaggagattatctaactggatgttttcgattttcctcacaaattcatcatat 360~480: Scer.....: ---------------------------------------------cttgttgcttattctcttgctgtattt-ttcgaaacactgctaaataaaaaggtatatattaaatagtctactgc Smik.....: tgtttgaattaattaacatacttggacacttgggacagcagacatcttgt-gcttattctcttgctgtacttattcagaatattactagaaaaaaaggtatacactaattactgtgctgc consensus: ***** ****************** ** *** ** * * *** * *********** * *** ** * * **** Smik_spli: BBBBBBB 480~600: Scer.....: gtaacctatacattttacatggcatttacttttgactttgccagtgttactctctgcgctaggataa-tat---tcggtggtataggctcacgcggcctggccggaacgaactgctacca Smik.....: gtaacctatacattttacatcacacatacctttgaccttgcaagtgctactctctgggccactacaactgtccatcgatagtctaggctcatgcagcctctctggagcatacagctgtca consensus: ******************** ** *** ****** **** **** ********* ** * * ** * * *** * ** ******** ** **** * *** * ** *** ** Smik_spli: DDDD 600~720: Scer.....: gttctgtttccctcagctagagggaaacagagagaatttccgcccaggtcaaaggccacagcatccttctagaggaggagcgacaacctaaggaaaattcagtttttcctagat-cgcat Smik.....: gtagtgtctttccttac-agcagtaacaggcagtaagcttcgcctacga-aaaggcgacg------tcctagagggaaagaagccgcct--ggaaaacttaactgctccttggtatgcaa consensus: ** *** * * * ** * ** * ** * **** * * ****** ** * ******* ** * *** ****** * * * **** * * *** Smik_spli: DD DDDDDD 720~840: Scer.....: acatttt-tcaaccacttttttt-cacaatgcattatttttcaacatgtatgggtgttttttctgaatatcagactcttttatggagtaaaacaagctattaatatgtgacccatacatt Smik.....: gcattttcttgaacattttttttacgcagtacagtatttatta-catgtatgggtgtttttagaatacttgataatctttaagcagagaaaacatgatatccgttgtacacccaatcatt consensus: ****** * * ** ******* * ** * ** ***** * * ***************** * * * * ***** * ****** * *** * ***** **** 840~960: Scer.....: tcctgttacatccttacatatatgcaggcaattttttgtagttagaaaatttaatttttttctagtcggaataatcacagtagaggtgtggaaatcttggaaaatttgaaatgatcggat Smik.....: tgatctcgcatccttacattcgcacaggcaatttttttca--tgacaaattt--tcattttttgttcggaataatcacaacaaacgtttggaaatcttgaaaactttgaaatagtggaat consensus: * * * *********** ************* * * ****** * **** * ************** * * ** *********** *** ******** * * ** 960~1080: Scer.....: attagctactaatccatttaagcttgcagcattctgttcgaaggggtttgagaaaagcatagtacagcacagcaggaatcgtacacaATGGGTATGTCTACTATAAAATAATTCAAATCA Smik.....: aatagctatta--tcagttcagcttgcaggattttcttgcaaaggccctgaaaaaagcacagcacagcacagcaggaatcgtacacaatgggtatgtccaatataaaaagaaatagaatt consensus: * ****** ** ** ** ********* *** * ** ** ** *** ******* ** *********************************** * ******* * * * Scer_spli: BBBBBBB DDDDDD Smik_spli: DDDDDD known....: >============================ 1080~1200: Scer.....: CTTTTGTCATTTCATAGACCAAAGAAGCTCGCTTGTTACCTTAGAGGATTATACTAGTGCACAAAGGCATGCATAATACAACACACGTTATTGATGAAC-CTAGAGAGGCTAAAGTTATT Smik.....: gctttgtcatattataaacaatgaaggctcacttgaaacc--aaataaatgtcccgttg---agaggcatgcgaatcacaacata--ttattgatggattccagagagggcaatattacg consensus: ******** * *** ** * * **** **** *** * * * * * * ** * ******** * ****** * ********* * * ******* ** *** known....: ======================================================================================================================== 1200~1320: Scer.....: TTCTAATAAATCATGAGATTTTTCTCCTTTTTACAATAACTGAGCAGTCATAGTAATGGCCAAGCAAATTCGAGA---CAGGACCTTTGTACCACTATTTGCTGAACTCATTGTTAGAGT Smik.....: ccatt-taacacagagaattcatcttcattttacactatttgaggagttctaatactttataggttactttggaaatacatgattattttgtcaccactccaggttgctggccttcaagt consensus: * *** ** *** *** * ******* ** **** *** ** ** * * * * ** * * ** ** ** * *** * * * ** *** known....: ======================================================================================================================== 1320~1440: Scer.....: CTTCTTAGATAATATGATAAATTTGGTGTCTAATTGAAACGTCCACTTTTCTGTATACTAACAATTTTTAAAATGGGATCTACCAATTGAATTATATCAGCCATTTCCAAGAATTTACCA Smik.....: gttcttagataatatgataaacacggtggttgatgttagaaattgattatttgtttactaacaattatttaa-tataatttaccaattggatcatattagccatttccaagaatttacca consensus: ******************** **** * ** * ** * *** *********** ** ** * ** ********* ** **** ********************** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ==================================================================================================>= 1440~1560: Scer.....: ATCTTAAAGAATCATTTCAGAAAGCACTGGCAAGAACGTGTTAAAGTGCACTTCGACCAAGCTGGTAAGAAGGTTTCTAGACGTAATGCTAGAGCTACCAGAGCCGCTAAGATTGCTCCA Smik.....: atcttaaagaatcattttagaaagcactggcaagaacgtgtcaaggtgcactttgaccaagccggtaagaaggtttctagacgtaatgctagagcttccaaggctgccaaaattgcccca consensus: ***************** *********************** ** ******** ******** ********************************* *** ** ** ** ***** *** 1560~1680: Scer.....: AGACCTCTAGATCTCTTGAGACCTGTTGTTAGAGCCCCAACTGTTAAGTATAACAGAAAGGTCAGAGCTGGCAGAGGTTTCACCTTGGCTGAAGTTAAGGCCGCTGGTTTGACTGCTGCT Smik.....: agaccattagaccttttgagacctgttgtcagagctccaactgtcaagtacaacagaaaggtcagagctggtagaggtttcaccttggctgaagttaaggccgctggtttgactgctgca consensus: ***** **** ** ************** ***** ******** ***** ******************** *********************************************** Scer_spli: DDDDDD 1680~1800: Scer.....: TATGCCAGAACTATCGGTATCGCCGTTGACCACAGACGTCAAAACAGAAACCAAGAAATCTTTGATGCTAACGTTCAAAGATTAAAGGAATACCAATCTAAGATTATTGTTTTCCCAAGA Smik.....: tacgccagaaccattggtattgctgttgaccacagacgtcaaaacagaaaccaagaaatcttcgacgctaatgtccaaagattaaaggaataccaatccaagatcattgttttcccaaca consensus: ** ******** ** ***** ** ************************************** ** ***** ** *********************** ***** ************* * Scer_spli: BBBBBBB 1800~1920: Scer.....: AATGGTAAGGCCCCAGAAGCTGAACAAGTTTTGTCTGCTGCTGCTACTTTCCCAATTGCTCAACCAGCTACCGATGTTGAAGCTAGAGCTGTCCAAGACAATGGTGAATCTGCTTTCAGA Smik.....: aacggtaaggctccagaaactgaacaagttttgtccgctgctgccactttcccaattgctcaaccaactactgatgtcgaagctagagctgtccaagacaatggtgaatccgctttcaga consensus: ** ******** ****** **************** ******** ********************* **** ***** ******************************** ********* 1920~2040: Scer.....: ACCTTGAGATTAGCCAGATCTGAGAAGAAATTCAGAGGTATCAGAGAAAAGAGAGCTAGAGAAAAGGCTGAAGCTGAAGCTGAAAAGAAGAAATAGatctaaaaacttcatcaaagaatt Smik.....: accttgagattggccagatctgaaaagagattcagaggtattagagaaaagagagctagagaaaaggctgaagctgaggctgaaaagaagaaatagatctaaaaacttctcttaagaatt consensus: *********** *********** **** ************ *********************************** ******************************* ******* 2040~2160: Scer.....: tttcatccacaatttttgtattttccttcttttttatctgttcaatttcataaataatatatatgtacaatgtataaacgggaagccatcacttataatttatcatttccttaactttat Smik.....: tttcatccacaaat---gtattttccttcttttttatctgtttcatttcataaataacatatatgtacaatgtataaatgggaagccatcacttataatttatcatttccttaaccttag consensus: ************ * ************************* ************* ******************** ************************************ *** 2160~2280: Scer.....: agtctgggtgagaatatggttgacagtattt-ttacaagttagcgcagttttcttgatatgatggaacattattgtattagtagtagtcaggtttgcaggcttttccttcgagcacaacg Smik.....: agtctaaatgagggtacggcccatggaataggttacaaatatgcgtaactcctttt-----------cataaccgtagagttatgagtgttgcttgttgtattctaccaagactacaact consensus: ***** **** ** ** * * ** ****** * *** * * ** *** * *** ** *** * *** * ** * * ** ***** 2280~2400: Scer.....: tggcattatatatagcatagaagagatgcgaaagatggtattgaacaaaaagaaagtactgtcttattgtattaaaagcgactatatagaaaaattataaaaaattttaaatgttagaat Smik.....: caacactttatatgataggaaggataagcaataggagttattaaacaaaaagaaaatactgtcttgctgtattaaaagtgactatatagaaagattataaaaatttctaaatgttagaat consensus: ** * ***** * * ** * ** * ** * **** ************ ********* *********** ************* ********** ** ************* 2400~2430: Scer.....: atgcaatttcttctaaacagtgcggcactt Smik.....: atgcaatttcttctaaacagttgagcacct consensus: ********************* **** * { alias......: ['RPS16B'] chromosome.: 4 description: Ribosomal protein S16B (rp61R) end........: 307788 exons......: [(1, 24), (457, 864)] gene.......: RPS16B introns....: [(25, 456)] length.....: 864 name.......: YDL083C plength....: 288 start......: 306925 tdist......: 306925 type.......: ORF up.........: 0 } Scer: 5 donors and 1 branches Spar: 0 donors and 0 branches Smik: 7 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1191), ('Smik', 1191)] ->[('Scer', 1402), ('Smik', 1402)] ->[('Scer', 2110), ('Smik', 2110)] ->[('Scer', 2550), ('Smik', 2550)] ->[('Scer', 1061)] ->[('Smik', 109)] ->[('Smik', 1080)] ->[('Smik', 1274)] ] [ ->[('Scer', 1801)] ] 0~120: Smik.....: aaacaatgatcttggattggtattcctttaatctttggacattagcgtcgaagatttcttggtttctgttttgacgtctgtggtcaacagcaataccaatggttctggcgtatgcagcag Smik_spli: DDDDDD 120~240: Smik.....: tcaaaccagcggccttaacttcagccaaggtgaaacctctaccagctctgacctttctgttgtacttgacagttggagctctgacaacaggtctcaaaaggtctaatggtcttggggcaa 240~360: Smik.....: ttttggcagccttggaagctctagcattacgtctagaaaccttcttaccggcttggtcaaagtgcaccttgacacgttcttgccagtgctttctaaaatgattctttaagattggtaaat 360~480: Smik.....: tcttggaaatggctaatatgatccaattggtaaattatattaaataattgttagtaaacaaataatcaatttctaacatcaaccaccgtgtttatcatattatctaagaacacttgaagg 480~600: Smik.....: ccagcaacctggagtggtgacaaaataatcatgtatttccaaagtaacctataaagtattagaactcctcaaatagtgtaaaatgaagatgaattctctgtgttaaatggcgtaatattg 600~720: Smik.....: ccctctctggaatccatcaataatatgttgtgattcgcatgcctctcaacgggacatttatttggtttcaagtgagccttcattgtttataatatgacaaagcaattctatttcttttta 720~840: Scer.....: ----------------tgtgtacgattcctgctgtgctgtactatgcttttctcaaaccccttcgaacagaatgctgcaagcttaaatggattagtagctaatatccgatcatttcaaat Smik.....: tattggacatacccattgtgtacgattcctgctgtgctgtgctgtgcttttttcagggcctttgcaagaaaatcctgcaagctgaactga--taatagctattattccactatttcaaag consensus: ************************ ** ******* *** ** ** ** * *** ********* ** ** ** ****** *** * * ******** 840~960: Scer.....: tttccaagatttccacacctctactgtgattattccgactagaaaaaaattaaattttctaactacaaaaaattgcctgcatatatgtaaggatgtaacaggaaatgtatgggtcacata Smik.....: ttttcaagatttccaaacgtttgttgtgattattccga---acaaaaaatgaaaatttgtca-tgaaaaaaattgcctgtgcgaatgtaaggatgcgagatcaaatgattgggtgtacaa consensus: *** *********** ** * * ************** ******* *** *** * * * ************* *********** * * ***** ***** * 960~1080: Scer.....: ttaatagcttgttttactccataaaagagtctgatattcagaaaaaacacccatacatgttgaaaaataatgcattgtg-aaaaaaagtggttga-aaaatgtatgcg-atctaggaaaa Smik.....: cggatatcatgttttctctgcttaaagattatcaagtattctaaaaacacccatacatg-taataaatactgtactgcgtaaaaaaaatgttcaagaaaatgcttgcataccaaggagca consensus: *** * ****** * ***** * * * * ***************** * * ***** ** * ** * ******* ** * * ****** *** * * **** * Scer_spli: DDDDDD 1080~1200: Scer.....: actgaattttccttaggttgtcgctcctcctctagaaggatgctgtggcctttgacctgggcggaaattctctctgtttccctctagctgagggaaacagaactggtagcagttcgttcc Smik.....: gttaagttttcc--aggcggcttctttccctctagga------cgtcgccttt-tcgtaggc-gaagcttactgcctgttactgctgtaaggaaagacactactgacagctgtatgctcc consensus: * * ****** *** * ** ******* * ** ****** * * *** *** * ** * * ** * * * *** **** *** ** * *** Scer_spli: DDDDDD Smik_spli: DDDDDD DDDDDD 1200~1320: Scer.....: ggccaggccgcgtgagcctataccaccga---ata-ttatcctagcgcagagagtaacactggcaaagtcaaaagtaaatgccatgtaaaatgtataggttacgcagtagactatttaat Smik.....: agagaggctgcatgagcctagactatcgatggacagttgtagtggcccagagagtagcacttgcaaggtcaaaggtatgtgtgatgtaaaatgtataggttacgcagcacagtaattagt consensus: * **** ** ******** ** * *** * * ** * * ** ********* **** **** ****** *** ** ************************ * * ** *** * Smik_spli: DDDDDD 1320~1440: Scer.....: atatacctttttatttagcagtgtttcgaa-aaatacagcaagagaataagcaacaagATGTCTGCCGTCCCAAGTGTCCAAGTATGTTAAATAATTTAAACGATGTCACGAATTTGTGA Smik.....: gtatacctttttttctagtaatattctgaataagtacagcaagagaataagc-acaagatgtctgctgtcccaagtgtccaagtatgttaattaattcaaacaatatgatgaatttgtga consensus: *********** * *** * * ** *** ** ****************** ************* ************************ ***** **** ** * * ********** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >===================================== 1440~1560: Scer.....: GGGATATTGAAACCATGCAGTGAGATAAT-TTCAATTTAAGAACCATATCACCTGAATAAGACGGGTGGGGCAAGCACTAGATGCGAATCATAGTTTTAGAACAACGGATCACCATTTCA Smik.....: ggaaaatcgaaaacatccagttagataatctcctacctaaaaacagggctaattgaacaaaaaaatggcgagattgattagattagaaacatgg----ataacagtgcaacattactt-- consensus: ** * ** **** *** **** ******* * * * *** *** * **** ** * * * * * ***** *** *** * * **** * * ** * ** known....: ======================================================================================================================== 1560~1680: Scer.....: CACGTTAAAGACCGAGTAGAAATAACCAATAAATTGTGTGGGAAAATATTATACTTAATTTCTCTGTGGAGTAAAGTAATGAGCGTCTTTTGCGGTCTTATT-------TATTCATTCGC Smik.....: ----------gccagtcgggaacatcatgcagatcatataggggaatatttattttaatctatttgt---gcgaagta---gatattttttatgggcatactctgtgactgttatgttga consensus: ** * ** * * * ** * * ** ****** ***** * * *** * ***** * **** ** * ** * * ** * * known....: ======================================================================================================================== 1680~1800: Scer.....: TCCCCTTGCAATGAATTTTGAACAGAATGCTCCA-AAGAGGAAGTGCCAGGGTACCTCACTTGTTTCACCCTTTTACACAGTTCATA-ATATTT----TTGAGGATTTTGAATTTCTGTT Smik.....: ctccattgaattgaactataaaaaggagacttcgcacgctattgtgccagaagggccttcNtatttNNNcNNNNNaNNcNNNNcNtNNNNNNttNNNNNNNNNNNctNtNNNtNNNtNtt consensus: ** *** * **** * * ** ** * ** * * * ******* * *** ****************************************** ************** known....: ======================================================================================================================== 1800~1920: Scer.....: TTACTAACATG--TGACACGAAATGTTTTTCATTTTTGGTTTTATAACAGACTTTTGGTAAGAAGAAATCAGCTACCGCTGTTGCCCACGTCAAGGCCGGTAAGGGTTTGATTAAGGTCA Smik.....: NtNctaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ================================================>= 1920~2040: Scer.....: ACGGTTCTCCAATCACTTTGGTTGAACCAGAAATCCTAAGATTCAAGGTCTACGAACCATTATTGTTGGTTGGTTTGGACAAGTTCTCCAACATCGATATCAGAGTTAGAGTCACTGGTG Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCGACATCAGAGTTAGAGTCACTGGTG consensus: ************************************************************************************************* ********************** 2040~2160: Scer.....: GTGGTCATGTTTCTCAAGTCTACGCCATCAGACAAGCTATTGCTAAGGGTTTAGTCGCTTACCACCAAAAGTACGTTGACGAACAATCCAAGAACGAATTGAAGAAGGCCTTCACCTCTT Smik.....: GTGGTCACGTTTCCCAAGTTTACGCCATCAGACAAGCCATTGCTAAGGGTTTAGTCGCTTACCACCAAAAGTACGTTGACGAACAATCCAAGAACGAATTGAAGAAAGCTTTCACTTCTT consensus: ******* ***** ***** ***************** ******************************************************************** ** ***** **** Scer_spli: DDDDDD Smik_spli: DDDDDD 2160~2280: Scer.....: ACGACAGAACTTTGTTGATCGCTGATTCTAGAAGACCAGAACCAAAGAAATTCGGTGGTAAGGGTGCTCGTTCTAGATTCCAAAAATCTTACCGTTAAgaaaatttcaagattttttcca Smik.....: ACGACAGAACTTTGTTGATTGCTGATTCTAGAAGACCAGAACCAAAGAAATTCGGTGGTAAGGGTGCTCGTTCTAGATTCCAAAAATCTTACCGTTAAg-aaattacaagatttttt-cg consensus: ******************* ******************************************************************************* ***** *********** * 2280~2400: Scer.....: gaaatctcttcacttttctttgcacatctattgtattaaaaaactttttacttacatatactgtatatcttcctataacgggtaaaacgttaatttagaatc--attcccaaaacttcat Smik.....: gaaatctcttcacttttctttgcacatttattgtattaaaaaactttttacttacatatactgtatatcttcctgtaacaggtaaaacgttaatttagaatccatttactaaaattgcat consensus: *************************** ********************************************** **** ********************** ** * **** * *** 2400~2520: Scer.....: ttcctta----tcatgctttgccatgtgatgcccaatagaattgtcttgtgcgttcacgaaatgactacactacgttcattttccaacaaaaactcaatctttcgctataactgctaatt Smik.....: tttttcgatatttttgctcaactgcttcttatccaactggaatgtcttgaatgtcaaaaaattggata-actacgtctatttttgcggaaataatgaactttcgg----aattgtaaatc consensus: ** * * **** * * * **** * * ******* ** * ** ** ** ******* ***** *** * * ** ** * ** ** *** 2520~2621: Scer.....: tttttccacttccccttttttgtttgttttgttcgtttgaataatacaaaatctttatataatctatataaaaacgtatctt-ttttccttta-------- Smik.....: aatttctccttttc--tttttgtttgtttagttcgtttgaataatacaaaatctttacatattatatataaaattgtttttcattttcctttattaattat consensus: **** *** * ************* *************************** *** * ********* ** * * ********** Scer_spli: DDDDDD Smik_spli: DDDDDD { alias......: ['KIN28'] chromosome.: 4 description: serine-threonine kinase, subunit of transcription factor TFIIK, a subcomplex of TFIIH end........: 268698 exons......: [(1, 28), (110, 1002)] gene.......: KIN28 introns....: [(29, 109)] length.....: 1002 name.......: YDL108W plength....: 334 start......: 267697 tdist......: 267697 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 5 donors and 3 branches Smik: 5 donors and 2 branches Sbay: 2 donors and 4 branches INTRON SPLICING FOUND!! [ ->[('Scer', 583), ('Spar', 583), ('Smik', 583), ('Sbay', 583)] ->[('Scer', 1218), ('Spar', 1218), ('Smik', 1218), ('Sbay', 1218)] ->[('Scer', 814), ('Spar', 814)] ->[('Spar', 42), ('Smik', 42)] ->[('Spar', 290), ('Smik', 290)] ->[('Smik', 1457)] ] [ ->[('Scer', 636), ('Spar', 636), ('Smik', 636), ('Sbay', 636)] ->[('Scer', 1460), ('Smik', 1460), ('Sbay', 1460)] ->[('Sbay', 269)] ->[('Sbay', 1130)] ->[('Spar', 61)] ->[('Spar', 1611)] ] 0~120: Scer.....: ---attactaccgtttccccgatgtt--tttgggtgaataaggtcaggtgagcattttttgtact-gatattttttctctttgtttgcagacacaacgcttgctgttaatacgctaaaaa Spar.....: ---actattgcctttttcccaacgtc--tttgtctgaataaggtcagttgagg----tttgtact-aacattttttctctct---tgcacacacaacgcttgctgttaatactttaaaag Smik.....: aatactattgctttcccttttattttattttatgtaaatgaagtcagttaagcg--cttagtacccaacattttctcatgtc---tgtacacacagcgc--------------------- Sbay.....: ..........................................................ttgtgcctgattttttttccttgt--ttgcatatttaatgcttacttttcaacactttaaaa consensus: * ** * * * * * *** * *** * ***** * ** ** ** * * **** ** ** * * * ** Spar_spli: DDDDDD BBBBBBBB Smik_spli: DDDDDD 120~240: Scer.....: cataccacactaccttgaacaaatcctccaagagaaatttgta-agaattc----------agaagcggtttcagggga---agtcggcttagttgtcaattgtaattgaaaatcaccct Spar.....: catacttcactacctcgaacacatt-tccaagaaaaattagtgtaaaattc----------aggaatgataatacggaa---agttcgcttagttatcaattgtcattggacatcacctc Smik.....: -atactaagctatctcaaatgtgtt--tcaagaagagttagcg-taaattc----------acgggtgatgatacggag---tattagttagacatttcattactacttgaaaccagttc Sbay.....: agtacactactatatcaagcacgttttccaagaacgattttagcatggcccttgggtggaggggaatggcattctagatcttgatcgagctcaccccttacttttactgccagcctgctc consensus: *** *** * * * ***** ** * * * * * * * * * 240~360: Scer.....: ctaatttgaaagattttcagtttcaataa-gacatcaatcttgccagtttgtaattttttggtatataga-a------atggtcttcaagca---taagccttaagaaagattcgtccat Spar.....: ctgggtcgaaagatttacagttttaataaaggcagcggtcttgcccgcttgtaagtttttggtatatata-atgtta-aatatcttcaagcaa--tagatctctagaaagattcgttcat Smik.....: ctgaaaagaatggttttgagtttcaacgatagttgcagtcctgcagtcctgtaagttttcaatatgtatatagtaga-ataactttcaagcag--taaagtttaagaagatttgttttag Sbay.....: aactatcgcaagatctacagctctatcgaaattaacaatcctgctcgtttccaagtttttag-atatataaatgtagcatggttttcaagtctcctagagtcttagagtatttc-ttgac consensus: * * * * * ** * * * * ** *** * ** **** ** ** * * * ****** ** *** ** * * Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: BBBBBBB 360~480: Scer.....: tggatgaacctaca-attt---tttttgtgttatgatgtgaagcttcatttgaag-cattgtgcagagaatattacaagtagattcaaaaaacac--attgaaaaa-------------- Spar.....: ttgatgaaactacagatct---tttttgtgttatga-----atttccatttgagg-tattgtaaagaggacattgaaagtagattcaaaaaacac--aatgaaaaa-------------- Smik.....: ttggtaaacctacg-cttt---tctttgtatcatga-----agtctgacttgaaaatattatgcatatgatattgcaagtagatcttaaaaaagt--ctttgaaaa-------------- Sbay.....: tttaaaggtctacaattttatttttttgtgctatga-----gatttgatttcaag-tatcacgaatggaatattgcaaatagatctcaaaaaaatgaaataaaaaataagcatattactt consensus: * **** * * * ***** **** * ** * ** * * *** ** ***** ***** * **** 480~600: total....: ====== Scer.....: ---aaatacaagtgaaatca---cagttacttaaaagtcatcaaaaaaaatattcccggcctcagagcgaacatATGAAAGTGAATA-TGGAGTACACAAAGGGTATGTGGGGGT-TATA Spar.....: ---aa-tacaaatgaaccca---caattggttaaagttcatcaaaaaaaa-attccgggcctcaaggcaaacatac-agagtgactaatggaatatacaaagggtatgtaggggt-cgca Smik.....: ---aa-tacaaagcaaatcaacgtatttagatcaagattcccaaagatattgatt-gggtatcaaaaccgacatacgagagaaaataatggaatacacaaaaggtatgcatgact-tatt Sbay.....: gaaaaatataaacgaactaaaccacgtaacttgaaggcgcttgaatacac--tttcgagtaccgaaacaagcatactaaagtggataatggaatacacaaaaggtacgtacggatctgtc consensus: ** ** ** ** * * * ** ** * * * * * * **** * ** ** **** ** ***** **** * * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >================ 600~720: total....: ======= Scer.....: ---TATTGTCGTCTTTCTTTTAACATTCAATAATGATACTAACGTTGATTAATGAT------------GATTCATCGCAGAAAAGAAAGTTGGTGAGGGTACTTATGCGGTTGTTTACTT Spar.....: acctattgacatcctgttttcaacattcaataatggtactaacgtaaaataatg-t------------aattaATGGCAGAAAAGAAAGTCGGTGAAGGTACTTATGCGGTTGTTTACTT Smik.....: ggttatcgttatcttattaccagtagcggacaaggatactaacataaaataatcct------------gatttatcgtagaaaagaaagtcggtgaaggtacttatgcggtcgtttactt Sbay.....: atttgcccacccgctattttcaacatcggcgaagattactaacaaagaataatgcttatttcgacataaatttactgtagaaaagaaagtaggtgaaggtacctatgccgttgtttattt consensus: * * * * * ** ******* * **** * *** * * ************ ***** ***** ***** ** ***** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==============================================================================>= 720~840: Scer.....: GGGTTGTCAACACTCTACTGGAAGAAAGATTGCTATTAAGGAGATCAAAACATCCGAATTTAAAGATGGTTTAGATATGTCAGCTATCCGTGAAGTTAAGTACCTCCAAGAAATGCAGCA Spar.....: GGGTTCTCAACACTCTACTGGAAGAAAGATTGCTGTAAAGGAGATCAAAACATCTGAATTCAAAGATGGTCTGGATATGTCAGCTATACGTGAAGTTAAGTACCTACAAGAAATGCAACA Smik.....: gggttctcaacattctactggtagaaaaattgctgtaaaagagatcaaaacatctgaattcaaagatggtctggatATGTCAGCTATACGTGAAGTCAAGTACCTACAAGAAATGCAACA Sbay.....: agggtctcagcattctactggaagaaagattgctgtaaaagagatcaaaacatccgaattcaaggatggtttggatATGTCAGCTATACGTGAAGTCAAATACTTGCAAGAAATGCAGCA consensus: ** * *** ** ******** ***** ****** * ** ************** ***** ** ****** * ************** ******** ** *** * *********** ** Scer_spli: DDDDDD Spar_spli: DDDDDD 840~960: Scer.....: TCCGAACGTCATAGAACTAATAGACATATTTATGGCTTATGATAATTTAAATCTCGTTCTGGAGTTCCTACCAACTGATCTAGAGGTGGTAATAAAAGACAAATCAATACTGTTTACACC Spar.....: TCCAAACGTTATTGAGTTAATAGATATATTTATGGCTTATGATAATTTAAACCTCGTTCTGGAGTTCCTACCCACTGACTTAGAGGTGGTAATAAAAGACAAATCGATATTGTTTACGCC Smik.....: TCCAAACGTCATTGAATTAGTAGATATATTTATGGCTTATGATAATTTGAACCTCGTTCTGGAGTTCCTGCCCACTGATCTAGAGGTGGTAATTAAAGACAAATCAATACTCTTCACACC Sbay.....: TCCAAACGTTATTGAATTAGTAGATATATTTATGGCTTATGATAATTTGAACCTCGTCTTAGAGTTTCTTCCCACAGATTTAGAAGTGGTAATAAAAGACAAATCAATACTGTTCACACC consensus: *** ***** ** ** ** **** *********************** ** ***** * ***** ** ** ** ** **** ******** *********** *** * ** ** ** 960~1080: Scer.....: AGCAGATATTAAGGCATGGATGCTTATGACTTTGAGGGGCGTGTATCATTGCCACAGAAATTTCATTTTGCACAGGGATCTGAAACCAAACAATTTATTATTTTCACCTGATGGCCAGAT Spar.....: GGCAGATATCAAGGCATGGATGCTTATGACTTTGAGGGGCGTTTATCATTGCCACAGAAATTTCATTTTGCACAGGGATTTGAAACCAAACAATTTATTATTTTCACCAAATGGCCAAAT Smik.....: GGCTGATATCAAGGCATGGATACTTATGACTTTGAGGGGGGTCTATCATTGTCATCGAAATTTTATTTTGCACAGGGATTTGAAACCAAATAATTTGTTATTTTCACCAGATGGACAAAT Sbay.....: AGCAGATATAAAAGCATGGATGCTCATGNNNTTGAGAGGAGTTTACCATTGCCATAGAAATTTTATTTTACACAGGGATCTGAAACCAAATAATTTACTGTTCTCACCAGACGGCCAAAT consensus: ** ***** ** ******** ** *********** ** ** ** ***** ** ******* ***** ********* ********** ***** * ** ***** * ** ** ** 1080~1200: Scer.....: AAAAGTAGCAGATTTCGGTCTAGCAAGGGCGATACCGGCCCCACATGAGATACTGACAAGTAACGTCGTAACAAGATGGTATAGAGCGCCAGAATTGTTGTTTGGAGCTAAACATTACAC Spar.....: AAAAGTAGCAGATTTTGGTCTAGCAAGGGCTATACCTGCCCCACACGAGATACTGACAAGTAACGTTGTCACAAGATGGTACAGAGCACCGGAACTTTTATTTGGAGCCAAGCATTACAC Smik.....: TAAAGTGGCTGATTTTGGTCTAGCAAGAGCGATACCTGCTCCACATGAGATATTGACAAGTAACGTTGTGACTAGATGGTACAGAGCTCCAGAACTTTTATTTGGAGCCAAACATTACAC Sbay.....: CAAAGTAGCGGATTTTGGTCTAGCAAGGGCCATACCTGCCCCACATGAAATATTAACGAGTAACGTGGTGACTAGATGGTATAGAGCACCAGAACTTTTATTCGGAGCCAAGCATTATAC consensus: ***** ** ***** *********** ** ***** ** ***** ** *** * ** ******** ** ** ******** ***** ** *** * ** ** ***** ** ***** ** Sbay_spli: BBBBBBB 1200~1320: total....: ====== Scer.....: ATCGGCTATTGATATCTGGTCAGTAGGCGTTATATTCGCGGAATTAATGCTAAGGATACCTTATTTACCAGGACAGAATGATGTCGATCAAATGGAAGTAACGTTCAGGGCCTTAGGGAC Spar.....: ATCGGCTATCGATATTTGGTCAGTGGGGGTTATATTTGCGGAGTTAATGTTAAGGATACCATATCTACCAGGACAGAATGATGTAGATCAAATGGAGGTAACGTTTCGGGCCTTAGGGAC Smik.....: ATCTGCTATTGATATTTGGTCAGTGGGTGTGATATTTGCGGAGTTAATGCTAAGAATACCATATTTACCAGGACAGAATGACGTAGATCAAATGGAGGTAACATTTAGGGCGTTGGGGAC Sbay.....: ATCAGCTATTGATATTTGGTCAGTGGGGGTTATATTTGCGGAATTAATGTTGAGGATACCATATCTACCAGGACAAAATGACGTAGACCAAATGGTAGTTACATTTAGAGCCTTGGGGAC consensus: *** ***** ***** ******** ** ** ***** ***** ****** * ** ***** *** ********** ***** ** ** ******* ** ** ** * ** ** ***** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: ACCTACAGATAGAGATTGGCCCGAAGTTTCTTCCTTTATGACGTATAACAAGTTACAAATATATCCGCCCCCTTCAAGAGATGAATTGAGGAAAAGGTTCATTGCTGCTAGCGAATACGC Spar.....: ACCTACAGATAGAGACTGGCCCGAAGTTTCTTCCTTTATGACATATAACAAGTTGCAAATATACCCGCCCCCTTCAAGAGATGAATTGAGGAAAAGGTTCATCGCTGCCAGTGAATATGC Smik.....: GCCTACAGACAGAGACTGGCCTGAAGTTTCTTCCTTTATGACTTATAACAAGTTACAGATATATCCGCCCCCTTCAAGAGATGAATTGAGGAAAAGGTTCATTGCAGCTAGTGAATACGC Sbay.....: GCCCACGGATAGAGCTTGGCCTGAGGTTTCTTCCTTTACGTCATACAACAAGTTACAAATATACCCACCTCCTTCAAGGGATGAATTGAGAAAAAGATTCATCGCTGCTAGTGAATATGC consensus: ** ** ** **** ***** ** ************* * * ** ******** ** ***** ** ** ******** *********** ***** ***** ** ** ** ***** ** 1440~1560: Scer.....: CTTAGATTTTATGTGTGGAATGCTAACGATGAACCCACAAAAGAGGTGGACCGCTGTTCAGTGTTTAGAAAGTGATTATTTCAAAGAATTACCACCACCAAGTGACCCGTCTTCAATAAA Spar.....: ATTAGATTTTATGTGTGGAATGCTAAAGATGAACCCACAAAAGAGGTGGACCGCTGTTCAGTGTTTAGAAAGTGATTATTTCAAAGAATTACCACCACCCAGTGACCCCTCCACAATAAA Smik.....: ATTAGATTTTATGTGTGGTATGCTAACAATGAATCCACAGAAGAGATGGACTGCCGTTCAATGTTTAGAAAGCGATTATTTTAAAGAGTTACCATCACCAAGTGACCCTTCTACAATAAA Sbay.....: ATTGGATTTTATGTGCGGAATGCTAACGATGAACCCACAGAAGAGATGGAATGCAATTGAGTGTTTAGAGAGTGATTATTTCAAAGAATTACCGCCTCCCAGTGATCCCTTTACAATAAA consensus: ** *********** ** ******* ***** ***** ***** **** ** ** * ******** ** ******** ***** ***** * ** ***** ** * ******* Scer_spli: BBBBBBB Smik_spli: DDDBBBBBBB Sbay_spli: BBBBBBB 1560~1680: Scer.....: AATACGTAACTGAtatgattttataaaatttgtagaat-ctgtgttattgacattagatgtatcctcaacatatacaaataaacttcttgatgcgtcttgtttt-ttggtgttgaatttt Spar.....: AATACGTAGTTGAtttgaatctatatagtttgtaaaat-ttg-attatcaatactaactatatgctcaatatatgta--caatctctctgagggatactttttt-ttggtgttatttttt Smik.....: AATACATAGTTAAtttgattctacatagtttatagaaaactcaaataatagcatattatgtgtgctcaatatacgta--taaacttcctgtgccatgctttttc-ttgctgtcatttttt Sbay.....: AATACGTAGCTGAtttgaccttacatagtttataaaag-ttcagttatcaacaatagatatacgcattgcgcatttaaattaatggttggcaccttaattttttattgatgtgtttttga consensus: ***** ** * ** *** ** * * *** ** ** * ** * * * * * * * * * * *** *** *** ** Spar_spli: BBBBBBB 1680~1799: Scer.....: aactctttt-c-catcattatggaattcgtttttagattttaacaacaacaatatgaggggagacaaacagtagcagacgaaaacgaaaacaaaagcaagaaatatctgatctaaaat- Spar.....: tacactttt-tgcatcattatggaactcaattttagatagtaataacaacattaggcaaggggataaagagtggatggccaaac--gaaacagagccaacaggtagtagatctaagat- Smik.....: tgatgtttt-tcctttattatagaactcagttccaagtagtaacaaaaacttcatataaaagaataaagagtggctggactaat-aaacataaagacaagaaacacaaga----aaat- Sbay.....: tgattttacatatatcactgtagaacgcaactcaaaagaataaaaacagcctaatgcaaaagta-aaaaagaacagcaataagtaacacagaaaaagaaaaggtcatcagttcaaaagg consensus: ** * * * * *** * * * *** ** * * * * *** ** * * * * * ** * * * { alias......: ['HNT1'] chromosome.: 4 description: similarity to protein kinase C inhibitor-I end........: 239605 exons......: [(1, 97), (209, 588)] gene.......: HNT1 introns....: [(98, 208)] length.....: 588 name.......: YDL125C plength....: 196 start......: 239018 tdist......: 239018 type.......: ORF up.........: 0 } Scer: 4 donors and 3 branches Spar: 5 donors and 1 branches Smik: 3 donors and 2 branches Sbay: 3 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 419), ('Scer', 423), ('Spar', 415), ('Spar', 423)] ->[('Scer', 1058), ('Spar', 1058), ('Smik', 1058), ('Sbay', 1058)] ->[('Scer', 1210), ('Smik', 1210), ('Sbay', 1210)] ->[('Sbay', 472)] ->[('Smik', 1125)] ->[('Spar', 881)] ->[('Spar', 930)] ] [ ->[('Scer', 1142), ('Spar', 1142), ('Smik', 1142), ('Sbay', 1142)] ->[('Scer', 1660), ('Smik', 1660)] ->[('Scer', 1069)] ] 0~120: Sbay.....: ctaggcatctttcaaattcaatacgttggcttgtttgaagacgaaagggctgtgcaaaaagtgcatatcgacgtactcgacactaatcttcttcaaagccatgtccggcctcattgctag 120~240: Sbay.....: agtggctgagacctcagtttgagtagaggacttgtctgtcagaaaaatttcagtttttggtttcttggtgaggctcaatgcctccccgacttctggatacgtttgtagatctcactagcg 240~360: Scer.....: ---------------------------------------------ctgtaaaagtgttgttaactgacctccgtttctttagggtaacacaaccgtttacat-gtgtatccatatccacg Spar.....: --------------------------------------------tatgcactcgtgctcttaattgattgttggt--tttagggtaacataatcttccatat-ctgtgtttatatctaaa Smik.....: .............................................................................tatgtattcgcgctttcaactgcttactgtttttgaagacacc Sbay.....: gcgatgtcaatgacaccaggtagttgcagggtatagagagtctgttttaatgaatattgtggcataagtttcctcccttt---gtagcgcctggtgtcggcg-gtacgacgata-gtaac consensus: * * * * * * * * * * * * * * 360~480: total....: ========== Scer.....: ta---gtatccgactatcaatatat-ccgtatatatatatatatatatatgggatgagcgtatgtgagtgttttcgtagatattcaaaatacgagtaaaggag--atcctaggtgtggat Spar.....: tatgcgtatccaaatatgcgtatcc-aactggcaatatatatacatatatg---cgtatgtgtgtacgtgtttgcatagatattcaaaatacgagcaggggag--attctatgtgtggat Smik.....: tgttcttctgtatctatccatattc---atatccatatacgcatctgactg---tctatatatatatatatatctatatgcaaacgaaatacgagcagggga-----catagatgtgcat Sbay.....: tgctcgaattttggtttcattgttcaaagtagagagttcttccccgggttgatattactgtctggcgctttcattatctctactctgctgctggtgagacaagcattcctgcgtatgtaa consensus: * * * * * * * * * ** * * * * * * * * * * * * ** * Scer_spli: DDDDDDDDDD Spar_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD 480~600: Scer.....: ta-gtaaggggagtgtggc-aacttcctttttccg-gttaattctccgcgctttcgttaga------ctattttgcaaggacccaaataggagacgcatggaggcttctacaaaacagcg Spar.....: ta-gtaaggggagtgtggcaaacttccgtgttccg-gttaattctccgtgctttctttagg------gcattgca-agaaacccaaacaggagacatgtggaaacttctataaaactgtg Smik.....: ta-ataaggggagtgtggg-aacttccgcttttcg-attgatactccgtgctttccgtaga--------gttttacaaaggacccaaacagggacaaatacaaacttacacaagactatg Sbay.....: tatatatagaaggagaaggaaagttaccgcttgtgcgtgacatttccgttttctagttcagtgctctctgcttcttgagaggcactataaagaaccta-aacaacatccacagcgctgcg consensus: ** ** * * * * ** ** * ** * * **** * * * * * * ** * * * * * * 600~720: Scer.....: tgccgttttgatggcatgagca-gggggcgcaaaggaaacaccggtaaatcgcgcaagaccttgttggccacgtagcctcaaaggttgaattgacacttgtctacagaacttgaaaagta Spar.....: tgccgttctattggcatgagcaggggggcgcaaaagaaacgccggtaaatcgcacgggaccctgtcggctacgtagcctcaagggttgatttgatacttgtatacaggacttgacaagta Smik.....: tgccgttttcattgcatgagcagggaggagcaaatgaaatgtcggtaaatcg--taagaccctgccgactacctagcttcaacggttgttctagtcattccgtagaaaagctgaaaagta Sbay.....: tgctgccctaagtgtacg-gta-ggatgtacgaaggaagcatccgtcggttgcataagatcctgtcatctacgtaggcttaagggcag----gatgcacgtacaaaaga------gagga consensus: *** * * * * * * * ** * * ** *** * ** * * ** * ** * ** *** * ** ** * * * * ** * 720~840: Scer.....: caaaaggaggtcacataaaacagtaagcttgagaagctttaagatatggtgcgaatcgttacagaatattccttgcagaaataatggcgggtcc-gttctcttctgaagaagttacc--- Spar.....: caaaag--ggacccattaaacagcaagc-----aagctttgagaattgata-gaattgattcagaatgttccctgcagaaatagcggcgggtcctgatccttcccacagaagacacc--- Smik.....: gaatag-aggtcgcgccaaacatcaggcttggaaatctttgaaatatagtgccaatcaagacggatcgcttgccgcatcaataatgg-accacaggtgtttccccagacggttctatctt Sbay.....: cgtgatgtag-caaatctaacgatccat----gatgatccg----ttagctccaatccatgtataatacttcatgcattaacgatgataggttatcatgcatcctagacggttcctcttg consensus: * * * *** * * * *** * * *** ** * * * 840~960: Scer.....: gccctactgaagcattg--ctgtacgatcgtgtaatgtgatgtgtgttcgactggaaagcggagaacattatgaagtaaaaggacaatcagcac-gccttccagacttttaagaaacatt Spar.....: gccttactgagacacta--ctgtacgatcgtgagatgtgatgtatgctcgattggaaagcggagaacattatgaagtaaaaagtctatcagtac-gtcgtgaaggcttttaaggaacatc Smik.....: gacccatcccactggggaattgtacgatcgtgagaggtgatgtg-gccacattggaaagtggagaacatcacgaaataaaaaggctatttgatatgtctccaagacctttgag---cttc Sbay.....: ggcccatcccagcgtggaactgtgtgatcgtgcgttgtgatgtgggctag-ctgggaagtagagacgcccatcaagaaaaaagggctcttgtactattgttcaagatcttgagcatcgtc consensus: * * * *** ******* ******* * *** *** **** * ** **** * * * ** ** * * Spar_spli: DDDDDD DDDDDDD 960~1080: total....: ====== Scer.....: gATGGAGCCATTGATATCGGCACCGTACCTAACAACAACAAAAATGTCTGCTCCTGCTACGCTTGATGCTGCCTGTATTTTTTGCAAGATTATTAAAAGTATGTCACATTACTAATAAAG Spar.....: actagggttattgaaatcgtcaccatacgtaacaactacaaaaatgtctgctcctgctgcccttgatgctgcctgtattttttgcaagattattaaaggtatgttgtacttacgaaacgt Smik.....: aatgaattcataagaatcatcatagc-tctaacaggaacaa-aatgtcctctcctgctgccctcgatgccgcttgtattttttgcaaaattatcaaaggtatgtcataacttcaaaacgt Sbay.....: tataggaccat--acaccatcagaacatttaaaggtaacaacaatgtctgctactaccgcccttgatgcagcctgtattttttgtaagatcattaaaggtatgtcacattg--gaagcgt consensus: * ** * * ** *** **** ****** ** ** * * ** ***** ** *********** ** ** ** *** ****** * * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >===================== 1080~1200: total....: ======= Scer.....: AGCTTACACTCACACCAATGATGGCGATAGTCTC-TATGTAGTACATATACATAAAGCAGAATACTAACAATCGATCCGCTATGCAACAGGCGAAATTCCATCCTTCAAATTGATTGAAA Spar.....: tgcttagggtc--atcaataatgacaatagcatcatgtgtagtacttatacataaagcaaaatactaacaaccggtccgctgtgcaataggtgaaattccatccttcaaactgattgaaa Smik.....: tgcttgtgcagagcacacccgtaatagcagta--------acctcgtatgta-gtagcataatactaacaattggtccgctgtgtaataggtgaaatcccatctttcaaattaattgaaa Sbay.....: tgcttgcgcca--cgtggtaacaaccaaagtat--------atacatacatataaagcaaaatactaactatcggccggctcttttacaggtgaaatcccatctttcaaattgattgaga consensus: **** ** * ** * **** ********* * * * *** * * *** ***** ***** ****** * ***** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: BBBBBBB known....: ========================================================================================>= 1200~1320: Scer.....: CAAAGTACTCGTATGCTTTCTTGGACATCCAACCTACTGCTGAAGGTCATGCTTTAATCATTCCTAAGTACCATGGTGCGAAGTTGCATGACATCCCGGACGAATTCCTTACCGATGCTA Spar.....: ctaagtactcatatgctttcttggacatccaacctaccgctgaaggtcataccttaatcattcctaagtaccacggtgcgaaattgcatgacatcccagacgaatttcttaccgacgccA Smik.....: ctaagtactcgtatgcatttttggacatacaaccaactgctgaaggccatacgttaatcattcccaagtatcacggtgcaaaattgcatgacattcctgatgaatttcttaccgatgccA Sbay.....: ccaagtactcgtatgcgtttttggacatccagcctacagccgaaggccacgccctaatcatccccaagtaccacggtgccaaattgcacgacatcccggacgaattcctcaccgatgccA consensus: * ******** ***** ** ******** ** ** ** ** ***** ** * ******* ** ***** ** ***** ** ***** ***** ** ** ***** ** ***** ** * Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: TGCCGATTGCCAAGAGACTGGCCAAGGCAATGAAGTTGGACACTTATAATGTGTTGCAGAATAATGGTAAAATTGCGCATCAAGAAGTCGACCACGTCCACTTCCATTTGATTCCTAAGA Spar.....: TGCCGATTGCTAAGAGACTGGCCAAGGCAATGAAATTGGACACTTATAATGTGTTGCAGAATAATGGTAAGATTGCACATCAAGAAGTCGACCATGTCCATTTCCATTTAATTCCCAAGA Smik.....: TGCCAATCGCGAAGAGACTGGCTAAGGCAATGAAGTTGGACACTTATAACGTGTTGCAGAATAATGGTAAGATTGCGCATCAAGAAGTCGATCACGTTCATTTCCATTTGATTCCGAAGA Sbay.....: TGCCAATTGCCAAGAGACTGGCCAAGGCCATGAAGTTGGACACCTACAACGTCTTGCAAAACAACGGTAAGATCGCGCATCAAGAAGTGGACCATGTGCATTTCCACTTGATTCCTAAGA consensus: **** ** ** *********** ***** ***** ******** ** ** ** ***** ** ** ***** ** ** *********** ** ** ** ** ***** ** ***** **** 1440~1560: Scer.....: GAGATGAGAAAAGTGGTTTGATTGTAGGGTGGCCAGCCCAAGAAACGGACTTCGATAAGTTGGGCAAGCTACACAAGGAATTGCTTGCCAAACTAGAAGGCTCCGATT-AGagtaatgca Spar.....: GAGATGAGAAAACTGGTTTGATTGTAGGGTGGCCAGCTCAGGAAACGGATTTTGACAAGTTGGGCAAGCTACACAAAGAGTTGCTTACCAAACTAGAAGGCTCCGATT-AGagtaatgca Smik.....: GAGACGAGAAGACTGGTTTGATTGTAGGGTGGCCAGCTCAAGAAACTGACTTCGATAAGCTAGGCAAGCTGCACAAAGAACTGCTTGCCCAATTAGAAGGCTCCGATTAGaataaatgca Sbay.....: GAGATGAGAAGACCGGGTTGATCGTCGGCTGGCCAGCCCAAGAAAGCGACTTCGAGAAGTTGGGTAAGCTACACAAGGAATTGCTCGCCGAACTAGAAGGCTCCGATTGAgagcaataca consensus: **** ***** * ** ***** ** ** ******** ** **** ** ** ** *** * ** ***** ***** ** **** ** ** *************** * *** ** 1560~1680: Scer.....: t--gctatga-tttcttt----tagcgttttcttttcatatttaagtttatacatatgggtgtgt--ttgcttccattcatatc------cactctataatgctaacaatcatgttacta Spar.....: t--gctatgattttcttt----tggcgtattatttttatatttaagtttatacatatgcgtgtg--------tacattcatacc------cactttataatgctaataatcatgttactg Smik.....: t--gctatga--ttctt-----tacggtcttactcttatatttaagtttatacatgtgtgtgta--------atcaccct----------tgcttctcaatgctaactatcgtactagag Sbay.....: ttaattatgcaactccttagcggactactttatacttaaatatacgtgtatatgtcttcgtgcgtacgcgcgtgtgtgcgtgtcccatgtcactctttaatgctaataaacaagtctttc consensus: * **** ** * ** * * ** ** ** **** * * *** * ** ******** * * Scer_spli: BBBBBBB Smik_spli: BBBBBBB 1680~1800: Scer.....: gccatcgttgctatcgatacc-------------ttatga-------------acagctctaactccttcctttttaacctaccgccttttgcgcactacccggcaacccctcga--atg Spar.....: gccatcggtgctgtcgatatctcgatgttaaatgtcatac-------------acagctctatctccttccttttttacgtacag-cttttgcgcactacccggaatcccctcga--atg Smik.....: gtcatcgaagctgacgatagcctaatatttaacgtcatat-------------aatgcgctagctctttccttacttacttacaa-cttttgagcactacccggaaacccctcgaatatg Sbay.....: gccatcaaccttgcccatgggtcttaacaacttctcatggagagatagcaattatagctctatctctttccttattt-cctacaa-agatcgcgcactacccggaaacccctcga--atg consensus: * **** * * ** * ** * ** *** *** ****** * * *** * * *********** * ******** *** 1800~1920: Scer.....: tgaattcggtggcaaaaaaggac--atatatcagggccgtgtatttaagagatccgcagttgatgtagtcaattaatctagttctatta--agatttgactcaacgccattgactcgata Spar.....: tgaattcggtggcaaaaaaggacatatatatcagggccatgtatttaagagatccgcagttgatttgctcaaatcatctaactctatca--agatttgactcaacgccattgactcgata Smik.....: taaattcggtggcaaaaaaggacatatatatcagggccgtgtatttaagagatccataattgatttgtttagatcatctatttatgtcg--atatttgacctaacaccattgactagata Sbay.....: tgaattcggtggcaaaaaaggacatatatatcagaacgac-tatttaagagatccgtagttgatttacttaatacatctaattccgtcaccagatttgactcatttccatagattcggta consensus: * ********************* ********* * ************** * ***** * * * ***** * * * ******* * **** ** * * ** 1920~2040: Scer.....: actggctcaactacaagacagatatacaaatc---------------------------------------------------------------------------------------- Spar.....: actggctcaactacaagacagatatacaaatc---------------------------------------------------------------------------------------- Smik.....: actggctcaactacaagacagatatacaaatcatgggtgaagaacataaaccacttttagacgcctccggtgtcgaccctcatgaagaggataaaactgccactgccatttgagaagaaa Sbay.....: actggctcaactagaaca-agatacatcaatt---------------------------------------------------------------------------------------- consensus: ************* ** * ***** * *** 2040~2073: Smik.....: gaagaaggacaacagcttctggttgacgatgct { alias......: ['RPP1B', "RPL44'", 'RPLA3'] chromosome.: 4 description: Ribosomal protein P1B (L44') (YP1beta) (Ax) end........: 230527 exons......: [(1, 114), (416, 622)] gene.......: RPP1B introns....: [(115, 415)] length.....: 622 name.......: YDL130W plength....: 207 start......: 229906 tdist......: 229906 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 1 donors and 2 branches [ ->[('Scer', 614), ('Sbay', 614)] ->[('Scer', 40)] ->[('Scer', 164)] ] [ ->[('Scer', 903), ('Sbay', 903)] ->[('Sbay', 768)] ->[('Scer', 465)] ] 0~120: Scer.....: ttggtcattgttaaggctaaaggttctgcagacacgttttgtacgtagaaagaagcaatcatgccaaatcaaaat--taggaaatgaacatcagtggtattttataag---------cct Sbay.....: aggaccattgtcggagttaaccgatccaggaacacaatcta-----ggaaacaaacacgccccgaaaacaagaacggtgagagatgaaagtcattgacgctgtatagaacttttagatct consensus: * ****** * *** * ** **** * * **** ** ** * *** * ** * ** ***** *** ** * **** ** Scer_spli: DDDDDD 120~240: Scer.....: gcacattatatata-gtatatacgtcacga-atacaggaacaccgtcagttagagaaacgtcg----cctcagtttgctcctcagatattcctttaaacccatacatatcttacacaaaa Sbay.....: gcccattatatatataaatatacatttttatgaacaagtaccacgccagagtaaaaagaatagaaatttttccttttcccccaaaacgctattaagaacccatacatgtttactgcagta consensus: ** *********** ****** * * *** * ** ** *** * ** * * * *** * ** * * * * *********** * * ** * Scer_spli: DDDDDD 240~360: Scer.....: catccgtacat---cagaaggattatatgaaacgcaaaaaaaaata---aaattttcatttctgcgtgtcgcgcgaaggaga-aatcttagaattgaaacttccggctaacggttgctaa Sbay.....: catccgtacatatttagagagacctcgttatttcaaactggttttttccacatttgtgttt-tgcgtagcgcgcgaagtagagaatctaggaattgaaacttctggttagaggttggtaa consensus: *********** *** ** * * ** * * **** *** ***** ********* *** ***** ************* ** ** ***** *** 360~480: Scer.....: aactagtttccaatgtaataccaaataagcatttgatgttgaatctgtaagccccttcgtgatatttcaaggttaaattacgaattgcagtttcagttaatcttggactaacaaagaaat Sbay.....: aactaatttccagattaaggccaaataagcaattagtattga-----ttaacccct--------------ggttttatcttgagctttatttcagattgtgcttgaaaaagagaagaaac consensus: ***** ****** *** *********** ** * **** * * ***** **** ** ** * * ** ** **** * * ****** Scer_spli: BBBBBBB 480~600: Scer.....: caaa--caactaagaagaaaATGTCTGACTCTATTATTTCCTTTGCTGCTTTCATCCTAGCTGATGCTGGTTTGGAAATCACCTCTGACAACTTATTGACTATCACCAAGGCCGCTGGTG Sbay.....: caaaaccaactaagaa-aaaATGTCTGACTCTATTATTTCCTTTGCTGCTTTCATACTAGCTGATGCTGGTTTGGAAATCACCTCTGACAACCTAGTGACTATCACCAAGGCCGCCGGTG consensus: **** ********** ************************************** ************************************ ** ******************* **** 600~720: Scer.....: CTAATGTCGACAACGTATGTACAAAAATGCAACCTAAAACGACTTTGTGTGACTACGAAGAGAAAGATTAGACAACAATCG------------TCCCGAGAAATGCGCA------ATTTT Sbay.....: CCAACGTCGACAACGTATGTACAAGGACGAGAA--GGAAAGACTGTGTGTAAatgcgataggaacactgtaaaaatactcccaaattgtcccctcccagagaatgtgtattatgaataca consensus: * ** ******************* * * * ** **** ***** * * *** *** * * ** * ** **** **** * * ** Scer_spli: DDDDDD Sbay_spli: DDDDDD known....: >========================================================================================================= 720~840: Scer.....: GAATAATGGGGGACAGAAAAATTCCA------TGTAACGTTTCCCTCTAACATGATGAGATACTAGGGGGCAATACA-TGTAGAAATATTTCTCC-ATTA------ACGTATTTAA---- Sbay.....: gaataacgaaa-acggaagcgctcgaaaaaaatctagttctccaattcaactaactgggttgggaaagcgccatacactataacggcacgcctccgaatattccgtgcatatcgaagcta consensus: ****** * ** *** ** * * ** * * * *** ** * * * * ** ***** * ** * **** * ** * *** ** Sbay_spli: BBBBBBB known....: ======================================================================================================================== 840~960: Scer.....: --CGGAAAGCA---CAAGTCAGGAT-------CGAATTAC--TTCTTC--AAGGATCTCATTTTACTAACAAACTC--AACGAATAACGACTCTTCCTATGGAGCTTGTTA-TATGTATC Sbay.....: tccgtacagccacccaaactagcacacaagtgtaaatcacaattcacccgaatattctcattttactaacaaacatgtaacaaataacaaatttcattgtggaatttgttagcattttat consensus: ** * *** *** ** * *** ** *** * ** ******************* *** ****** * * * * **** ****** ** * Scer_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: ATTGAATTAGGTCTGGGCTGATGTTTACGCTAAGGCTTTGGAAGGTAAGGACTTGAAGGAAATCCTATCTGGTTTCCATAACGCTGGCCCTGTTGCTGGTGCTGGTGCTGCTTCTGGCGC Sbay.....: ttaaaattaggtctgggctgatgtttacgctaaggctttggaaggtaaggacttgaaggaaatcctatctggtttccacaacgctggtccagctgctgcttccggttctgcttccggtgc consensus: * ************************************************************************** ******** ** * ***** * * *** ******* ** ** known....: ========>= 1080~1200: Scer.....: TGCCGCTGCTGGTGGTGACGCTGCTGCTGAAGAAGAAAAAGAAGAAGAAGCTGCTGAAGAATCTGACGACGACATGGGTTTCGGTTTATTCGACTAAacatacaaggaaagtcatttttt Sbay.....: tgctgccgccggtggtgacgctgctgctgaagaagaaaaggaagaagaagccgctgaagaatccgacgatgacatgggtttcggtttattcgattaaacaaacaaggaaactcattcttt consensus: *** ** ** ***************************** *********** *********** ***** *********************** ****** ********* ***** *** 1200~1320: Scer.....: ctgcaacgtttttttacc---ctttatgtatatatatttacatataaaataaacctctaatcaatcagtatttaaa---aatcggaagtaa-tgtccatacgaaagggctacgagaatt- Sbay.....: ctgtaccgtttttttaccactctttatgtatctatacttacatataaa-taaacctttaatctactagtcattgaattgaataaaagataaacaagtatacgaatagaacatgacagggg consensus: *** * ************ ********** **** *********** ******* ***** * *** ** ** *** * *** ******* * * ** * 1320~1440: Scer.....: taaccatctcgttctttgctagaaatggcactgcgggatagcccctggttgcgggatatcaga--cctgtcgtcaccatagcaaccaaaaattacataaacccatggttgctcgcccttt Sbay.....: tatctgcctcgttcctccctagaggccatttagcgaggtt-cttcagggtgcgggacgcagaaatctcgccatcaccatggtaaccagaaattacataaactggtg-ttggtggcccttt consensus: ** * ******* * ***** *** * * * * ** ******* * * * * ******* * ***** ************* ** *** * ******* 1440~1560: Scer.....: gatggcgacgccgaccgaagc-ttctcccgcgcacatttttaaaatttttactcatcgggaatgaaaggttctttgacacatgtaaagctccctaagttggacatacgtcggtccttaca Sbay.....: gacggcgacgctgaccgaagccttttcccgcgcacatttttaaaatttttactcatcggga----------------------------------------------------------- consensus: ** ******** ********* ** ************************************ 1560~1680: Scer.....: ggcttagcaatacacctataaggcactagaaacgtataaaatttgagcactttagtttctcatcccttttgatacgaaacgcgggcaaggctacggcatacaggaatttaacattttgtt 1680~1684: Scer.....: ggct { alias......: ['RPL35B', 'SOS2'] chromosome.: 4 description: Ribosomal protein L35B end........: 218367 exons......: [(1, 3), (409, 768)] gene.......: RPL35B introns....: [(4, 408)] length.....: 768 name.......: YDL136W plength....: 256 start......: 217600 tdist......: 217600 type.......: ORF up.........: 1 } Scer: 2 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 528)] ->[('Scer', 1553)] ] [ ->[('Scer', 890)] ] 0~120: Scer.....: tctaaatctgtatagaacgtttagtcatgcggaccttgtgtgttttgtttctagattgttttatttttatgattgttgaagatataaaccactgtatagttgtataagataggataatga consensus: ************************************************************************************************************************ 120~240: Scer.....: tggtgcactgaaaataaacttactagctctttaatattgcaacggcttgtaacgggcgccatgatgacattcagaattataccactactatatgaaaaaatgaaaagaggccctgctttg consensus: ************************************************************************************************************************ 240~360: Scer.....: aacccgtacattttattctataatattgcatctgtggtttgcctgacggcagcgagtccaacacaaagtctggcatatgctacgaattttccaccatggattcagcacccaaacatttga consensus: ************************************************************************************************************************ 360~480: Scer.....: attttttttcatgtcgattgtgaaattttactgaagatgagggtaaatagaggcctgcaatcgtcatcatatgagaaatggatatattgaaaatctactcacatctcttttttgggggtt consensus: ************************************************************************************************************************ 480~600: Scer.....: tggtagtacagtgagaacacgataaagaaccaaataggactaaaaATGGTATGTAGAGATGAATATACATGAAACGGACGTGATATAATGTGCTATGGAAGAAAAAAGTCTCCTTTAATG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >======================================================================= 600~720: Scer.....: TCTGCAGGATAAATAATCAAGTGGTCTGAAGAAAATTTACAGCTACAGTATTACTGCAAACCTTGCAGGCAAATATCAGAGAGATCTCACCAGCTACAACTTGGTAACAGAAATTTATAA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: GTTTATGGCACTTGTTAAAATTGTTTGGAAGTTTTCGAAATTATAATATTGGTCTTCAGAAACCTGGAACCACATGTGAACTATTTTTTTTGGATAATGCATTGCACAGAGCGTATTAGT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: GTATACGAGAATCTAAAAATTTGAAACTGGCTCATAAAAACAGGAACTTTTACTAACAGTTATGATTTTTTGTTCCCATTTTCTTATCAATAGGCCGGCGTTAAAGCTTACGAACTAAGA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ===========================================================================================>= 960~1080: Scer.....: ACCAAATCCAAGGAACAATTAGCTTCTCAATTGGTTGACTTGAAAAAGGAGTTGGCTGAATTGAAGGTCCAAAAGTTGTCCAGACCATCTTTGCCAAAGATCAAGACCGTCAGAAAGAGT consensus: ************************************************************************************************************************ 1080~1200: Scer.....: ATCGCCTGTGTCTTGACCGTCATCAACGAACAACAAAGAGAAGCTGTTAGACAATTATACAAGGGTAAGAAGTACCAACCAAAGGACTTGAGAGCCAAGAAGACCAGAGCTTTGAGAAGA consensus: ************************************************************************************************************************ 1200~1320: Scer.....: GCTTTGACCAAATTCGAAGCTTCCCAAGTTACCGAAAAGCAAAGAAAGAAGCAAATCGCTTTCCCACAAAGAAAGTACGCTATCAAGGCTTAAtttcgttagattatcattttaatattt consensus: ************************************************************************************************************************ 1320~1440: Scer.....: gatttttggatatagtttaatttgtattttttaagaacaccaaacggcaatttattttattagtgatctactagctaaatcaatatactacattaaatttttatttgccatctttgtcat consensus: ************************************************************************************************************************ 1440~1560: Scer.....: aggatccgacgtcataatcagtcaggagccctacccctatacttcaatttgaaattaagaaaaaaaaagtgtagtagaacaggaaagtcgtattaatccatatgtagataaaggtatgct consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1560~1605: Scer.....: cttgtttatacaggccatatctacattgtgcatttcaagaactta consensus: ********************************************* { alias......: ['RPL35A', 'SOS1'] chromosome.: 4 description: Ribosomal protein L35A end........: 118518 exons......: [(1, 3), (495, 854)] gene.......: RPL35A introns....: [(4, 494)] length.....: 854 name.......: YDL191W plength....: 284 start......: 117665 tdist......: 117665 type.......: ORF up.........: 1 } Scer: 1 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 800)] ] [ ->[('Scer', 646)] ->[('Scer', 1237)] ] 0~120: Scer.....: aaattctagaatatggatcaaatacgcttgtataaactaaatgaaacataaagattaagaacttaagaggccaacgtcgatggatttattgacgatcaccagccaacacatatagatttt consensus: ************************************************************************************************************************ 120~240: Scer.....: agtgtaaaagcaataaaaaccaagataataaaataaaaaaatactgaagaagcctaactagtataaactactttaactaataatggcaatttgatatagaaacaaagaaacatgatatat consensus: ************************************************************************************************************************ 240~360: Scer.....: ttaggatattatacaacgcattttcatttgttttacagcacccctgcgtgaatcatatattgacgtttcgctctcaggtccaccgtgttctcaaaagatacttttaaaacctaaaacaca consensus: ************************************************************************************************************************ 360~480: Scer.....: cgaaatcatattatgataattcagaatgatagtgtggtactgtgtcaattgactgttcaagactgaagaggatctttgatttgttgttactcaacaaataatcttcacgaaaactttctc consensus: ************************************************************************************************************************ 480~600: Scer.....: aatctggggactgtattaatctcagacccatacatatctacacccataactttttacatttaattttttatcacataataggtagcttaaattgtaaagtcgcaaaaaaaaatggcagcg consensus: ************************************************************************************************************************ 600~720: Scer.....: cagcctctccgggtgaaccccacgacaacttacctggcactccatgcactaacgggcgggtttgggcaggattccagcatcaattttgcaaaattcacacctgagtaattcatatatgta consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 720~840: Scer.....: atataatgttaagcatacgctgtcgattagcactattattgaccgtagaataggtacagtgagacagtatattcgaaATGGTATGTTTGAGATGAACAAAATAATAAAGACTGACAACTG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >======================================= 840~960: Scer.....: CAGAACAGAGAGGATCATAGCAACCTAGTGCAAGAAAGAGCCTCGAAGCGTTAAACTTTTGGAACGTAATTCATCCGTTGGCTATGTCTATTCAATACAGTTAGAATACGAAAGCTGTAA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: TCAAGTATATCGGATTATTCGCAAGCAAAGAATCAAGGAAAAGAAAGTGAAAATAGCATACATCTTTAAATTCAGAGGTTTTGCTGAATTTTAATAGGGAAGTTTACGTTATGATTGTTG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1080~1200: Scer.....: GCCGTAGATCGCCTAGCGTTTGACCAAATTTAATTCTCCTAATTTTTTTATTGTAAAAAAGCCTTCCAACGAAATAAATTAGTTATTGGTTTTTTTTCTCTGTTACGAGGGATATATGAT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1200~1320: Scer.....: GCCTGTGCTTGTTAGTTCATTATAAGTGCTAATAAAATACTAACGTTAATAAAAATTTGGAATATTATTTCATTTTTTATCCTATTAATAGGCCGGTGTTAAAGCTTACGAACTAAGAAC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: =========================================================================================>= 1320~1440: Scer.....: CAAATCCAAGGAACAATTGGCTTCTCAATTGGTTGACTTGAAAAAGGAGTTGGCTGAATTGAAGGTCCAAAAGTTGTCCAGACCATCTTTGCCAAAGATCAAGACCGTCAGAAAGAGTAT consensus: ************************************************************************************************************************ 1440~1560: Scer.....: CGCCTGTGTCTTGACCGTCATCAACGAACAACAAAGAGAAGCTGTTAGACAATTATACAAGGGTAAGAAGTACCAACCAAAGGACTTGAGAGCCAAGAAGACCAGAGCTTTGAGAAGAGC consensus: ************************************************************************************************************************ 1560~1680: Scer.....: TTTGACCAAATTCGAAGCTTCCCAAGTTACCGAAAAGCAAAGAAAGAAGCAAATCGCTTTCCCACAAAGAAAGTACGCTATTAAGGCTTAAttggaagttcaattatatactatcattat consensus: ************************************************************************************************************************ 1680~1800: Scer.....: ctatagttccaacttttctacgtttttctagcaccttttaaataattgttaaattaaaacattttcatcgaaaatcttcaaaatataagacacattgagcgatgaaataagccttatttg consensus: ************************************************************************************************************************ 1800~1840: Scer.....: attagggtcaattttgcaatttattctatcacttattcat consensus: **************************************** { alias......: ['DTD1'] chromosome.: 4 description: D-Tyr-tRNA(Tyr) deacylase end........: 65766 exons......: [(1, 65), (137, 524)] gene.......: DTD1 introns....: [(66, 136)] length.....: 524 name.......: YDL219W plength....: 174 start......: 65243 tdist......: 65243 type.......: ORF up.........: 1 } Scer: 4 donors and 3 branches Spar: 6 donors and 5 branches Smik: 3 donors and 2 branches Sbay: 4 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 310), ('Spar', 310), ('Smik', 310), ('Sbay', 310)] ->[('Scer', 1058), ('Spar', 1057)] ->[('Spar', 1330), ('Sbay', 1334)] ->[('Sbay', 328)] ->[('Sbay', 703)] ->[('Scer', 197)] ->[('Scer', 1182)] ->[('Smik', 219)] ->[('Smik', 551)] ->[('Spar', 54)] ->[('Spar', 266)] ->[('Spar', 1194)] ] [ ->[('Scer', 357), ('Spar', 358), ('Smik', 356), ('Sbay', 356)] ->[('Scer', 1161), ('Spar', 1161), ('Smik', 1161), ('Sbay', 1161)] ->[('Scer', 1317), ('Spar', 1317)] ->[('Spar', 1571), ('Sbay', 1571)] ->[('Spar', 1219)] ] 0~120: Scer.....: ----ttttaggcgatagtttccacggtcattcgtatccaaagagaaaca----tatatgaatatattcttaaatttccattttgaattagcattt-cgcatctcactaggccttcgcgtc Spar.....: ----tcttacgcagaattttccataggcatttatattcaatgagat-ca----cgtatgtccatcattttaatttccacttttgaatcaccattttcggatcttatcaagccttcgcgtt Smik.....: -----------------------------------------------------------------------------------------------------cttatcaagttttcgcgtt Sbay.....: tattattccggtgtctcataacactatgctgcactttaaaagatggataacatcacgttaatttgttaaagatgcctattttcgcatcaggattt-cgcatcttatcaggatttcgcgtt consensus: ** * * * ******* Spar_spli: DDDDDD 120~240: Scer.....: tcttatg---acgttgaaaaatttg--gatatcaaaggtt---taaaaagtataa-----tcacgttaatcaaggctgcatgtacatattaaataatccacatattattcagcagcggat Spar.....: tcctata---acgttgaaaaattgg--gatgtcgacagtt---tgaaaaatgtgg-----tcacacttaaaaaggttgtatatgtatataaaataattcacatattattcagcagcggat Smik.....: tcctata---aatttgaaaaaaaaatcgatgtggaaaatt---ca-----tgttg-----ttggatcaagcaaaactttatatgttcatttaacaatccgtacgttattcagt-gctgat Sbay.....: tcttaaataaaagatgaaaaaattgaaattttcgatatttgtatagagattttaacaaaatagtattcatattgagaaaatagtacaataaaaaactctggaaaatactaaagaaccg-c consensus: ** ** * ******* * * * ** * * * * ** ** ** * * * ** * * * * Scer_spli: DDDDDD Smik_spli: DDDDDD 240~360: total....: ====== === Scer.....: ttacaATGAAGATTGTCTTACAAAAAGTCAGCCAAGCATCTGTAGTCGTCGATTCAAAAGTTATTTCAAGGTATGTTACCG-GT-TTTTTCAGCTTCGTTAGTGCACCAATTTTTTTT-- Spar.....: ttactatgaagatcgttttacaaaaagtcagtcaagcatctgtagttgtcgattcaaaagttatttctaggtacgttcttgcat-atttccagttccgttagtgttctaattttttttt- Smik.....: ccaccatgaagattgtcttacaaaaagttagtcaggcgtctgtagtcgttgactcaaaagttatttcaaagtacgtttctgcatcattttgaatttctgtagta-actagtttcttt--- Sbay.....: ccacaatgaagattgtcttacaaatggtcagccaagcatctgtagtagtcgattcgaaagtcatttcaaggtacgtttctactttattgtcagttctgatagtgttgtaaatgttatact consensus: ** ******** ** ******* ** ** ** ** ******** ** ** ** ***** ***** * *** *** * ** * * **** * * * * Scer_spli: DDDDDD BBB Spar_spli: DDDDDD DDDDDD BB Smik_spli: DDDDDD BBBB Sbay_spli: DDDDDD DDDDDD BBBB known....: >================================================= 360~480: total....: ==== Scer.....: -ACTA------ACACCTCTATCTATGTGACAGTATTAAACATGGTTATATGCTCCTAGTAGGTATTTCCATTGATGATTCTATGGCGGAGATAGATAAATTATCGAAAAAGGTTCTTAGT Spar.....: -acta------acacctcaaattgtgcgacagtattaaacatggttatATGCTGCTAGTAGGTATTTCCATCGATGATTCCATGGCAGAGGTGGATAAGCTATTGAAAAAAGTGCTTAGT Smik.....: -acta------acaccttaatctatgtaatagtattaaacatggttacATGCTCTTAGTAGGCATTTCCATCAATGATTCTATGGCGGATGTAGATAAACTATCCAAGAAAGTTCTTAAT Sbay.....: aactacctattacatattaatttacataacagtatcaaaaatggctacATGCTCTTGGTAGGTATTTCCATTGATGATTCTATGGCCGAGGTGGAAAAATTATCCAAAAAGGTTCTCAAC consensus: **** *** * * * * ***** *** **** ** ***** * ***** ******** ******* ***** ** * ** ** *** ** ** ** ** * Scer_spli: BBBBBBBBBBBBB Spar_spli: BBBBBBBBBBBBB Smik_spli: BBBBBBBBBBBBB Sbay_spli: BBB known....: ==============================>= 480~600: Scer.....: TTGAGAATCTTCGAAGATGAATCCAGAAATCTATGGAAGAAGAATATTAAAGAGGCCAATGGTGAAATTCTATCCGTGTCTCAATTCACTTTGATGGCAAAAACCAAGAAGGGAACTAAA Spar.....: TTGAGAATCTTCGAAGATGAGACCAAGAATCTATGGAAGAGAAATATTAAAGAGGTAAATGGTGAAATTCTATCGGTGTCTCAATTCACTTTGATGGCAAAAACCAAGAAGGGAACCAAA Smik.....: TTGAGAATCTTTGAAGATGAAACTAAGAATCTATGGAAGAAGAATATTAAAGAGGCCAACGGTGAAATTTTGTCAGTGTCTCAATTTACATTGATGGCAAAAACCAAGAAGGGAACCAAA Sbay.....: TTGAGGATATTTGAGGATGACTCCAAGAATTTGTGGAAGAAAAACATCAAAGAGGTTAACGGTGAAATTCTATCCGTGTCTCAATTCACATTGATGGCAAGGACCAAGAAGGGGACCAAA consensus: ***** ** ** ** ***** * * *** * ******* ** ** ******* ** ********* * ** *********** ** ********** *********** ** *** Smik_spli: DDDDDD 600~720: Scer.....: CCCGATTTCCATTTGGCCCAAAAGGGTCATATAGCTAAAGAACTTTATGAAGAATTCTTAAAATTACTAAGAAGTGATTTGGGTGAGGAAAAAGTAAAGGATGGTGAATTCGGCGCAATG Spar.....: CCCGATTTCCATTTAGCCCAAAAGGGTCATATAGCTAAAGAACTTTACGAAGAATTCTTAAAATTACTAAAAAGTGATTTGGGTGAAGACCAAGTAAAGGATGGTGAATTCGGTGCGATG Smik.....: CCAGATTTTCATTTAGCCCAAAAGGGTCATATAGCGAAAGACCTCTACGAAGAATTTTTGAAGTTACTAAGAAGTGGCTTAGGTGAAGAAAAAGTAAAGGACGGTGAATTCGGCGCCATG Sbay.....: CCTGACTTTCATCTGGCTCAGAAGGGCCACATTGCTAAAGAGCTTTACGAAGAGTTTTTGAAGTTACTAAGAAACGATTTGGGTGAAGAGAAAGTTAAAGATGGTGAGTTCGGGGCCATG consensus: ** ** ** *** * ** ** ***** ** ** ** ***** ** ** ***** ** ** ** ******* ** * ** ***** ** **** ** ** ***** ***** ** *** Sbay_spli: DDDDDD 720~840: Scer.....: ATGAGTTGCTCTTTAACTAATGAAGGGCCCGTTACAATCATTCTTGACAGTGACCAATAAga--ttgaccttatagatatatacgagaagaaaataaaaagcaaaca-ttatttgcaatc Spar.....: ATGAGTTGCTCTTTAACTAATGAAGGGCCGGTTACAATCATTCTTGACAGTGACCAATAAaaaattgactttatagacatataaaacaagaaactaagaagcgaact-ttatttgcaatt Smik.....: ATGAGCTGTTCTTTAACTAATGAAGGACCAGTTACAATCATTCTTGAGAGTGACTAAtgtaaatcggatttcataaatatataggagattgagttat------aata-tcat----agtt Sbay.....: ATGAGTTGTTCGCTGACCAACGAGGGTCCGGTTACAATAATACTCGACACTGATTAGtataaa--tgactttataaacataagcacgattgaatagaatacagcatagttttatatagtc consensus: ***** ** ** * ** ** ** ** ** ******** ** ** ** * *** * * * ** * *** * *** * * * * * * * 840~960: Scer.....: tttctt---t-cgcaaga---taaagtacc----aaaatctttccatgttatg-------------ttctcagtgaagtt-gagtagagcggagaggagccctccccaaaaaaatgaata Spar.....: tttttt---ttcgcaagaatataaagtaccc---aaaatctttccatttcatg-------------t-cgtaatgagatt-gaagataccggagaagaatctcccc--aaaaaacgaata Smik.....: tacttt---ctcac------------------------tctctccatttcatg-------------t-ctcaacaatctt-gaatatgacggataacaacatcccc--tgcaatcaaaga Sbay.....: ttcttcatcctctccagattgttttttgtcatagaaagtgttacgatattatggtatctatctatgtgtcaattgattttcgaaagtaacggaaaagaatccccct-----aaacttgtg consensus: * * * * * * * ** * *** * * * ** ** **** * * ** ** 960~1080: Scer.....: caaaata------tctgtgatggatttttgaattcacgcttccttcaataaccttcgccaagaaagtctagaattgttttatattc-tttacataaaagtaagtaaatcaa--ctttaaa Spar.....: caaatcacatccgtccatgatggggttttgatttcaagcttccttca----------ctaaaaaagtctagaattcttttatactt-tttagatgca-gtaagtaaatcaa--cttcaaa Smik.....: cgatataca----tccaagatcgagttttaagtcacagaccatctta----------ttagaaaagtctagaattgcttcatggtc-tttgcagatgaacaagtggaccaa--ttttcaa Sbay.....: caagatata----tccgtcataaaagtcc-agtctacaccaggttta----------gtgaaaaagcctagaattatttcattttcgttttgatgttaaacaatgaatcaaatttttata consensus: * * * ** ** * * * * * **** ******** ** ** * *** * * * * *** ** * Scer_spli: DDDDDD Spar_spli: DDDDDDD 1080~1200: total....: ======= Scer.....: aaactttaa-gggcgaaaatgaaaaaaaaaaaatgtaaaagtgaaaaaagggacggcgaagcgatgccctgcca---gtcttactaatccagagggctaaaag-catgtttacagtg-ta Spar.....: aaactttaa-gggcgcaa-tgaaaaaaaaaataaaaaaagtgaaaaaaagggac-----agcgatgccctgcaaa--gtcttactaatccagagagctaaaag-cgtgtttacagta-tg Smik.....: tagcattaaagggcgcaa-tgagaaaaaaaagggacagtg-------------------agcgatgccctgcaaaaagttttactaatccagagaattaagt--catgtttacggta-tt Sbay.....: tagctttaa-gggcgcattgaaaaaaataaaaaaatagaa---aaaaaagggac-----acagatggcttttaga--aacttactaatcagaagagcgatgtcatatgctcatgctgcta consensus: * * **** ***** * * **** *** * * **** * * ********* ** * ** * * * * Scer_spli: BBBBBBB DDDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1200~1320: Scer.....: tttccagtcata-ggagagtattgacctggca--tggaaaaagaaacgcacaat--gagaaaggggatatata--cccttaaattgacgatagttaaggagattttgaggtttgtgttac Spar.....: tttccagttatg-ggagtgtattaacctggca--cgaaaaaagaaacgtatagt--aagaaaagggatgtata--cccttaaattggtgatagtcaaggagcttttgaggtttatgttac Smik.....: taatcacagtca-ttaatgaattgacctgatacttggaaaaagaaaagtatagt--aagaaaagggatatatatacccttaatttggcaattgtcaaggtgcttttgaggttggaacgac Sbay.....: tatactgtattaatgagtgtattaagctg-cacttggaaaaagaaacgtatagttaaggaaaagggatgtata--cccttaatttaccgacagtcaaggagcttttgaggtttgtagcat consensus: * * * * *** * *** * * ********* * * * * **** ***** **** ******* ** * ** **** * ********** * Scer_spli: BBB Spar_spli: D BBBBBBB BBB 1320~1440: Scer.....: taataaaccagtaagcatac-tcgttgatgactttaacgtatatttggt-----------ttccaagggatattgaaaccgtatcttaagggatgacgatggttgg-tta-acattccct Spar.....: taatgaactagcatgtatac-tcgttgatggccttaatgcatatttggtaataggaaggttttcaagggatattgaaaacatatcttaagggatgatgattgttgg-ttatatattccct Smik.....: taataacctgacttg---ac-tgcccagtggcttcaatacatctatggtaatggcaaacatttcaagggatattgaaatcatatcttaagggaggactatggttgg-ttatacattccct Sbay.....: taatggaccagcttgtatgcctgatggatgatcttgatttatgtccggtattggcagagttttcaagggatgttagagctgtatcttaagggatgacgatgggtgggctacgtattccct consensus: **** * * * * ** * * ** * *** ** ******** ** * ************ ** ** * *** ** ******* Scer_spli: BBBB Spar_spli: BBBB DDDDDD Sbay_spli: DDDDDD 1440~1560: Scer.....: -aa----aagacaacgtataaaaaggttcaacaaagcgtccgttacca--ttatgctttgat-gttctcagtacgaaagtttacggtttt--ttttttcaattgaggaacataaaccaaa Spar.....: gaa----aagacaacgtataaaagggttcaacaaaacgtccgttatca--ccatgtcttga--gttctcagtacgaaaattcaggctctt--ttgtttcgattgaggaatataaaataag Smik.....: -------aaagttacatataaaagggttcagtaaagcgtttgttatcactttacgtctaaac-atactctgagctaaagttaagattcttatttctttcgattaagaaacactaagcaag Sbay.....: aaatccagatacaacgtataaaaaggtttagccaaatgtccggtgtca--ccattcttggcttgatctaaacacgggtatcgaaggtctt-tttttattgattaaggaatacaacgaaaa consensus: * ** ******* **** * ** ** * * ** * * ** * * * * ** ** * * *** ** ** * * ** 1560~1581: Scer.....: tagatatattatatcaacgtt Spar.....: caaatacaccatattaacgtt Smik.....: tccataccacatatcaacatt Sbay.....: aaggatacatatattaacgtt consensus: **** *** ** Spar_spli: BBBBBBB Sbay_spli: BBBBBBB { alias......: ['MAF1'] chromosome.: 4 description: Mod5 protein sorting end........: 458099 exons......: [(1, 6), (87, 1268)] gene.......: MAF1 introns....: [(7, 86)] length.....: 1268 name.......: YDR005C plength....: 422 start......: 456832 tdist......: 456832 type.......: ORF up.........: 0 } Scer: 2 donors and 3 branches Spar: 2 donors and 3 branches Smik: 1 donors and 1 branches Sbay: 3 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 487), ('Spar', 487), ('Sbay', 487)] ->[('Sbay', 333)] ->[('Sbay', 886)] ->[('Scer', 1864)] ->[('Smik', 10)] ->[('Spar', 814)] ] [ ->[('Scer', 1938), ('Spar', 1938), ('Smik', 1941), ('Sbay', 1941)] ->[('Scer', 537), ('Spar', 537), ('Sbay', 537)] ->[('Scer', 911), ('Spar', 911)] ->[('Sbay', 3)] ] 0~120: Scer.....: -----ctattatcggtaatggaggaaaaaaa---aa---------------tttttttaccatttc-tttatgtaacttc-atatatcatttttaaagcgtacatttcttat-aatttca Spar.....: -----ctattatcggtaatggaggaaaaaaa---aa------------aattttttttaccatttc-tttatgtaacttc-acatatcatttttaaagcgtacatttcttataaatttaa Smik.....: ......ttatgtcagtaatgaaggagaaaaactcaaaaaaatttaataccatttttttaccttttcgtttatgtaacttcgaagtatcatttttaaa....................... Sbay.....: taatactaataacggagagaaaaaaaaaaca---aaaaaatataatacaatttttttcaccctttc-tttatgtaacgtt-atatatcatttttaaagcgtatacttctctt-aacgtta consensus: ** * * * * * * *** * ** ****** *** **** ********** * * ****************** * **** * ** * * Smik_spli: DDDDDD Sbay_spli: BBBBBBB 120~240: Scer.....: cttcttaaatgcagtcacat-atttac-tgctatcagacaaagtaa--agcgtcgctaattacttgcctccacgagttgcttgtcaatcaggggcgcttcatctcg---ccagcgaaagc Spar.....: ttttcaaaacgcaatcacatcattagc-tgccaccagacaaaataa--agtgtcgttaatgacttgcctccacgagctgccagttaatcaggggcgcttcgtctcg----cagcaaaacc Sbay.....: catctaaatcatattaatattacaggtattacgttatattgtgtcgttgacttcgatgcaaccgaaggtacacgcgctgccggtcaatcaggggtgcatcgtttcgccagcagcaaaacc consensus: * ** * * * ** * * * * * *** * * * **** * *** ** ********* ** ** * *** **** *** * 240~360: Scer.....: gcgttgtccatcttatttaacaagagaaaaaa---aagataattcaacttaaaaagaacgtgctatcagctatataaaatgtagacacattatgtatcagtgtttctttagcaatgcgaa Spar.....: gcgttgtctatcccatttaacaagagaaaaaa---aagataattccacttcaaaagaacgtgctatcagctatataaaatgtagac-cattatatatcagtgtttgtttagcgatgcaaa Sbay.....: gcgttgtccatctaatctatcaagaggaaaaaaacaagataattctactttggaagaacgtgctatcagctatataacgcatggatatgttacgtacgtttatttatttagcaatgcgaa consensus: ******** *** ** ** ****** ***** ********** **** ************************ * ** *** ** * *** ****** **** ** Sbay_spli: DDDDDD 360~480: Scer.....: aaatataggcttagtgtcatttactta-aagttt----agaaactctgcacacttcaccaagaacaagtttaaccgctcattactccaaacggatt--tttttgcctaaagaatcacgac Spar.....: gag-atagacctagcgtcatttactca-aagctc----agataccctatacattccatcaacatcaaattcaccgactcattacttcaaacaga-c--ttttcgcttaaaaaatcacgac Sbay.....: taagaaagacatagttctacttaccaagaagttccagaagaacttcaccacgttcacttaagattaaccacaccaacgcgacacttcaaaccagttcattctcccccaaaagattacgat consensus: * * ** * *** * **** * *** * *** * ** * ** * ** * * * * *** ***** ** * * *** ** **** 480~600: Scer.....: aATGAAAGTATGTTATCACTCTAAAACTGCCATGCTC-------TTTATTCG-AAATTACTAACATTGTACCTGAACCCTC-CTTTTCTTCCTTAGTTTATTGATGAGCTAGATATAGAG Spar.....: aatgaaagtatgttatttctctaaaactgccataccctttcccttttgttct-agattactaacctgatatttgaaccctg-cttttcttccttagtttattgatgagttggatatagag Sbay.....: aatgaaagtatgttgttcatc-agcactgccacctac------aactgttcgcaagatactaacctcatacgaatcctttcgtttttcctccttagttcattgacgagctagatatcgaa consensus: ************** * ** * ******* * * *** * ******* * ** * * ***** ********* ***** *** * ***** ** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >======================================================================================>= 600~720: Scer.....: AGAGTGAATCAAACTCTCAATTTCGAGACAAATGACTGTAAAATCGTGGGCAGTTGCGATATTTTCACAACAAAGGCGGTTGCATCAGATAGAAAATTATATAAAACTATTGATCAGCAT Spar.....: agagtaaatcaaactcttaatttcgagacaaatgactgtaaaattgttggcagttgtgatattttcacaacaaaggcggttgcatcagacagaaaattgtacaaaaccattgatcaacat Sbay.....: agagtgaaccaaactctcaattttgagacaaacgattgtaaaatcgttggtagttgcgatattttcacaacgaaggcggttgcatccgacagaaaactgtacaggacaatcgaccaacat consensus: ***** ** ******** ***** ******** ** ******** ** ** ***** ************** ************** ** ****** * ** * ** ** ** ** *** 720~840: Scer.....: TTGGATACTATTTTACAGGAAAATGAGAATTACAATGCTACCCTTCAGCAACAGCTAGCTGCTCCCGAAACAAACCAATCA---------CCCTGCTCGTCGCCATTTTATTCTAATAGG Spar.....: ttggataccattttacaggagaatgaaaactacaatgctgcccttcagcaacagctagcaactcccgaaacaaaccaatcg---------ccttgttcgtcgccattttattctaatagg Sbay.....: ttggacaccattctgcaggagaacgaaaactacaatgcttcctttcaacaacaactagcagcccccgaaccaaaccaaccaaaccaaccgccttgttcatcaccgctttacccgaacaga consensus: ***** ** *** * ***** ** ** ** ********* ** **** ***** ***** * ****** ******** * ** ** ** ** ** **** * ** ** Spar_spli: DDDDDD 840~960: Scer.....: AGGGATAGCAACTCTTTTTGGGAGCAAAAGAGAAGAATATCTTTTAGTGAATACAATAGCAAT---AATAACACTAACAACAGTAATGGCAATAGCAGTAATAACAATAACTATTCTGGA Spar.....: agagatagtaactctttctgggaacaaaagagaagaatatcgtttagtgaatacaatagcaat---agcaatactaacaacagtaatggcaacagctgtaataataataaccattctgga Sbay.....: agagatagtagctccttctgggaacaaaagaggaggatatctatcagtgagtacaataataatacaaacaacaataatatcagcaacagcagcagcggtagcaacaataaccaccccgga consensus: ** ***** * *** ** ***** ******** ** ***** * ***** ******* *** * ** * *** * *** ** *** *** *** ** ****** * * *** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: DDDDDD 960~1080: Scer.....: CCTAATGGTTCTTCTCCAGCAACTTTTCCCAAAAGTGCCAAGCTAAATGACCAAAATTTAAAAGAATTAGTCTCGAATTACGATTCTGGCTCTATGAGCTCATCGTCTCTTGATTCTTCT Spar.....: cccagtggtacttgcccagcaactttttccaagagtgccaagctaaatgatcaaaatttgaaagaattagtttcaaattatgattctggctctATGAGCTCATCATCTCTTGATTCATCT Sbay.....: gctaataatactcctccaacaactttttccaaaagtgccaagttaaacgaccaaaacttgaaagaattggtgtcgagttatgactctggttctataagctcatcttctctagattcatct consensus: * * * * ** *** ******** **** ********* **** ** ***** ** ******** ** ** * *** ** ***** ***** ******** ***** ***** *** 1080~1200: Scer.....: TCTAAGAATGATGAGAGGATAAGAAGAAGGAGCAGTAGCAGTATTAGCAGTTTCAAAAGTGGTAAATCATCGAACAATAATT---ACAGTTCTGGTACAGCAACCAACAATGTTAACAAA Spar.....: TGCAAGAATGATGAGAAAATAAGAAGAAGGAGCAGTAGCAGTATTAGCAGTTTCAAAAGTGGAAAATCATCGAACAATAATA---ATAATTCTGGTGCGGCAACCAATAACATTAACAAA Sbay.....: tccaaaaatcatgagaaaATGAGAAGAAGAAGTAGTAGTAGTATCAGCAGTTTTAAAAGTGGTAAATCGTCAAATTATAATTGCAACAATGCCGGTTCAACCACCAATAATGTTAACAAA consensus: * ** *** ****** ** ******** ** ***** ***** ******** ******** ***** ** ** ***** * * * * *** * * ***** ** ******** 1200~1320: Scer.....: AGAAGAAAATCTTCGATAAACGAAAGGCCAAGCAATTTAAGTTTGGGTCCGTTTGGTCCCATAAACGAACCGTCAAGCCGCAAAATATTTGCTTATCTGATTGCTATCCTCAACGCTTCT Spar.....: AGAAGAAAATCTTCGATAAATGAAAGACCAAGCAATTTAAACCTGGGTCCGTTTGGTCCCATAAATGAACCATCAAGCAGGAAAATATTTGCTTATCTGATTGCTATTCTTAATGCTTCT Sbay.....: AGAAGAAAATCTTCAATAAATGAACGACCAAGCAACCTGAGTTTGGGTCCCTTCGGTCCTATAAATGAACCATCGAGCAGGAAAATATTCGCTTACTTGATTGCCATCCTGAATGCTTCT consensus: ************** ***** *** * ******** * * ******* ** ***** ***** ***** ** *** * ******** ***** ******* ** ** ** ****** 1320~1440: Scer.....: TATCCTGACCATGATTTTTCATCGGTTGAGCCAACGGATTTTGTCAAAACATCATTGAAAACTTTTATTTCCAAATTTGAAAACACCTTATATTCTCTTGGTAGACAACCAGAGGAATGG Spar.....: TATCCTGACCATGACTTTTCATCGGTAGAACCAACGGATTTTGTCAAAACATCATTGAAGACATTTATTTCCAAATTTGAAAACACCTTATATTCCCTCGGTAGACAACCAGAGGAATGG Smik.....: ............gatttttcgtcggtatagcctaccgattttgtcaaaacatcattgaaatcttttatctccaaatttgaaaacactttatattctcttggtagacagccagaagaatgg Sbay.....: TATCCTGATCATGATTTTTCATCGGTAGAACCAACTGATTTTGTCAAAACATCATTGAAGACATTTATTTCTAAATTTGAAAACACTTTGTATTCTCTTGGTAGGCAACCAGAAGAATGG consensus: ******** ***** ***** ***** * ** ** *********************** * ***** ** ************** ** ***** ** ***** ** ***** ****** 1440~1560: Scer.....: GTCTGGGAGGTAATTAATTCTCACATGACTCTTTCTGATTGCGTCCTTTTTCAATATTCACCTTCAAACTCTTTTTTGGAAGATGAGCCTGGCTATCTTTGGAATCTTATAGGTTTTCTT Spar.....: GTTTGGGAAGTGATCAATTCTCATATGACTCTTTCTGATTGCGTTCTTTTCCAGTATTCGCCTTCAAACTCTTTTCTGGAAGACGAACCTGGCTATCTTTGGAACCTTATAGGTTTTCTT Smik.....: atttgggaagtaatcaattcacacATGACTCTATCTGACTGCGTTCTCTTCCAATATTCCCCCTCAAGCTCATTTTTGGAAGATGAACCAGGTTATCTTTGGAATCTCATAGGTTTTCTT Sbay.....: ATTTGGGAAGTTATTAATTCACATATGACCCTTTCAGATTGTGTTCTTTTCCAATATTCGCCTTCAAACTCCTTCTTAGAAGATGAACCCGGTTACCTTTGGAACCTGATAGGTTTCCTT consensus: * ***** ** ** ***** ** ***** ** ** ** ** ** ** ** ** ***** ** **** *** ** * ***** ** ** ** ** ******** ** ******** *** 1560~1680: Scer.....: TACAACAGGAAAAGGAAAAGAGTGGCTTACCTTTACTTGATTTGCTCGCGTCTAAATTCGAGTACAGGCGAAGTGGAAGATGCCTTGGCAAAAAAACCTCAGGGAAAGCTTATAATAGAT Spar.....: TATAATAGGAAAAGGAAAAGAGTGGCTTACCTTTACTTGATTTGTTCGCGTCTAAATTTGAATACGAGTGAAGTGGAGGACACTTTGGCGAAGAAACCTCAGGGAAAGCTTATAATAGAT Smik.....: TATAACAGAAAAAGAAAAAGAGTGGCTTACCTTTATTTGATTTGCTCGCGTCTAAATTCAAATACAAGTGAAGTAGAAGACACGTTGGCAAAGAGGCCTCGGGGAAAGCTCACAATAGAT Sbay.....: TATAACAAGAAAAGAAAAAGAGTTGCTTACCTCTATTTAATTTGCTCGCGTTTGAATTCGAATACAAGTGAAGTAGAAGATACTTCTGTAAAGGAACCTCAGGGCAAAGTTATAATAGAT consensus: ** ** * ***** ******** ******** ** ** ***** ****** * **** * *** * ***** ** ** * * * ** **** *** ** * * ******* 1680~1800: Scer.....: GATGGCTCAAATGAATACGAAGGAGAATACGATTTCACTTATGATGAGAATGTAATAGATGATAAATCAGATCAAGAAGAATCCCTACAGTAGttttaaa---ctttaatttg--tgaat Spar.....: GATGGTTCAAATGAATACGAAGGAGAATACGACTTCACTTATGATGAGAACGTAATAGATGACAAATCAGATCAAGAAGAGCCCCTACAGTAGtttcata---cattaaatcg--tgaat Smik.....: GATGGTTTAAATGAATATGAAGGAGAATACGATTTTACTTATGATGAAAACGTAATAGATGACAAGTCAGATCATGAAGGGCCCCTACAATAGtttcata---tgttaatttgtttgaat Sbay.....: GATGGCTCAAATGAATATGAAGGAGAATACGATTTCACTTATGACGAGAATGTAATAGATGACAAATCAGATCATGAAGGGCCCCTTCACTAGttctttatatcattaatttt--ctggt consensus: ***** * ********* ************** ** ******** ** ** *********** ** ******** **** **** ** ***** * **** * * 1800~1920: Scer.....: -----tt---tccttgtcttacacctataatcgttaaaaacagtcccttta--tgtctactattgtaagtttctatttttaaaaaaatacc----------cttttcaactatgt-acct Spar.....: tacactt---attttgtctcccacctataatcctcgaaaacaactccatta--tgcccaccactgcaagtttctattt---aaagaatacc----------ctttttaactacat-acct Smik.....: ttacatt---ttcctttcttacttccacatttctgagtagcaaacgtattatttgcctaacaatgctggtttctacttactaaaataccccgttttcttgactcttcaactacat-attt Sbay.....: ttccttttcatctttatcttactttcataattctcacaaacaatcttatta--tgtcagatactatgaagtttcgttt-tgtcaaaatacc----------ctctttcttgatttcaatt consensus: ** * *** * * * * * * ** *** ** * * * ** ** * * ** ** ** * * * * Scer_spli: DDDDDD 1920~2040: total....: ======= Scer.....: ttatgacaatattatatt---tactaattgaacactttagcgaggattg-a-ataatgtgcgctactatataaaaagactgcct-tcatcatatat-tactgcaa----agctcttagtt Spar.....: ttatgactatattatatt---tactaattgaataatttagtaaggaatgaa-agagggtgtactataatataaaaagactgtct-ttactatatac-gaaaacaa----tgcctataatt Smik.....: ctttaactatattgtaccactaattaactaatcgactgaaggaggaaactagggaaactgtgattatggttacacagaatatatgtttttgaatatagactacaatgcgg.......... Sbay.....: ttatatctcattgacattaggtactaattaattatttaaaataaaaccagatgtaccgtgattatgcgcatacaagggttataa-tttttgtatac-aattacagtagcaatttatagat consensus: * * * * * * *** * * * * * * * * ** ** * * * * *** * ** ** * Scer_spli: BBBBBBBBBB Spar_spli: BBBBBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 2040~2084: Scer.....: tctt--tcgaatacggaacttcaa-------------------- Spar.....: cctt--tcgaatacggaactttaa-------------------- Sbay.....: gcataataaacaacagcttttcatgtcaataatatagtcctcaa consensus: * * * * ** * ** * { alias......: ['UBC5'] chromosome.: 4 description: ubiquitin-conjugating enzyme end........: 569765 exons......: [(1, 47), (138, 537)] gene.......: UBC5 introns....: [(48, 137)] length.....: 537 name.......: YDR059C plength....: 179 start......: 569229 tdist......: 569229 type.......: ORF up.........: 0 } Scer: 3 donors and 1 branches Spar: 2 donors and 3 branches Smik: 1 donors and 1 branches Sbay: 5 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 995), ('Spar', 995), ('Smik', 995), ('Sbay', 995)] ->[('Sbay', 1637), ('Sbay', 1641)] ->[('Scer', 1442), ('Spar', 1442)] ->[('Sbay', 682)] ->[('Sbay', 1028)] ->[('Scer', 362)] ] [ ->[('Scer', 1048), ('Spar', 1048), ('Smik', 1048), ('Sbay', 1048)] ->[('Spar', 1379), ('Sbay', 1379)] ->[('Sbay', 1274)] ->[('Spar', 1007)] ] 0~120: Scer.....: tattt-ttgattactgtaccaac-aaaga----cactggagaggtttaatatctatagaaatttatcaaactatagaatttcgcttccgatgtgtacgacataatgctttcttattcgca Spar.....: tatttctcgattattctaccaataaaaga----cactggagcggtttagtctctatgaaaattgatctaattataaaattccgattgcaatgtttataacataacactttctagttcaca Smik.....: tatttttt--ttattctaccaatagaaaa----tacagaggtggttagttgtatacgaaagttgattggactactgaattgtggttacgatatgaattatatgatactttcttgttcaca Sbay.....: tattc-ttgaattcttcactgatcacagaatattccccgagtgccttaaccttcacacaaacctactgaactaccggattcccgctacaatat-------ataatacatgc--------- consensus: **** * * * ** * * * * * * * * * ** * * ** *** * * ** * ** * * * * 120~240: Scer.....: actccattactttggcatctctgataattttttacctcatcgccaaaagaaaaaatttttcattctgcaacgggtaacggaatacagaggcaagagaacggaag-aacatca-tatcggc Spar.....: actccattattttggcatctctgataattttttacctcatcgccaaaag-aaaaatttttcattcttcagcgggtaacattgttca-agacaaataaacgcagt-aacatcc---tcggc Smik.....: actctatttcttttacatttctgataatttttcacctcatcgctaa----aaaaaattttcattgttcaacgggtaacc---tactaaacaaaaggagaggacgcggtaaaaccttcggc Sbay.....: -ctctgctactttggcatctctgataa-ttttcacctcatcgctaa----aaaaatttttcatggttctacgggtaacag--tacgaaggcgaagaaacatcagcaatgaggccctcggc consensus: *** * *** *** ******** **** ********** ** ***** ******* * * ******** * * * * * ***** 240~360: Scer.....: ggttattact----aaacagtat---atgtccaatcggttttggaaatgagattttcttattaatgatctgatcttagattatgttgggcaata-cgcgt-tatacaaaag-atctgcta Spar.....: ggttatttattttagatcagtac---atgtccaagtaattttgg-aataatactttcttattgatgttccagccttagaacaagttgttcaacagtgtga-tttacgagagaatttgctg Smik.....: ggttatttttt-tgagacgatac---ataactagtctgcttgggaa---aacctctccccatggcacttcagctctaacctttgttggaaagtgggactaattgacaaaagaatctgttg Sbay.....: ggttattttccacataatggttttccataaccgctctagtttaatatgaatagtcagctgtttgcgttccaatcgtgaagcct-tgaggtagtggtgcgtattggtccctacgcctggtg consensus: ******* * ** * ** * * * * * * * * * ** * 360~480: Scer.....: ttgcatgtggtgaaagttataccaacatttttgc-ttatatgaaatcatctgcaac-aaccaattgga---------taaggatagatttctc--aaatatatt---aaattatgtcttg Spar.....: ctatatgtagtcaaaattattataacgcttttgt-tgtagacgaataatctacagg-aaccaaatggaaaaacacactaaagacgtttttttttgagacacatt-tagaaatatgtcttg Smik.....: caattcgcggcaaaagctatgttaacgttcttgt---atatcg-gctaccttcagc-aaataatcggaatagaatatagagaatgcctaatattggagcggttt--agaggcattccttg Sbay.....: cattacgcggcgactatcaagctgacatcttcatggtgtatcgtaccatgtatactaaaccgatcatgcaaag----gaaggcccgataccctatatttcaattagcacgaaaagtcttg consensus: * * * * ** * * * * ** * * * ** * **** Scer_spli: DDDDDD 480~600: Scer.....: gt-ttacttacacagaaagtccc-aaagtacagatgaattatact---agggttgtgttcattg--ttccatgagaggctgtactttttgcctacttattttggtactcattcattaggc Spar.....: at-taacttatacaaaaggtctt-aaaggattggtgggctgtaatggcaggtttttgttaatcgttttccatgagaagcaatac-atttgcttgctcaccttgata-aaattcatcggac Smik.....: tt-ttccttatatagaacccgcttgaaatgttgactagt-------------ttatgtttattg-ttttcctgataagcagtat-atttgtttacttgctcgggtagttattcctctaac Sbay.....: ctctcgcatatgtagaagaacttaaaagttcaagccgagtat----------tttaattcttt---tgaaaggatagttagtgc-aattgcttaagcttgtcactggctgctcgtttaaa consensus: * * * ** * ** ** ** ** * * ** * * *** * * ** * 600~720: Scer.....: tcataaaccgatttttcttatattgtgcgtaattcaattagatatc-tagatgtattgctagtgctagt-acggtgtaaactct-cgtagcaagcg-ttttgaagcatg--gctgtggtg Spar.....: tcttaaaactctctctcttgtattgcgcgtgacttgattacagaccttggttggaccattagtactagt-acagcttaaactcc-cgtatcaagcgcttttgaagcatg--actattatg Smik.....: aagtagaaaattagttgttgagttgt----------------tacccaagttggattaatagtaataga-acaatctaaacttc-catatt-tgcacttagtaactttgctattattgtt Sbay.....: acatggtgctctccctaatcaatgccgttcgccttaatcacacatgtgtgttggaccataagctttggtgaaggcctagagtgtacgtaccaagcgccttggaaacatc--tttgaagtg consensus: * * * * * * * ** * ** * * * ** * * * ** ** * ** * * * Sbay_spli: DDDDDD 720~840: Scer.....: gaggt-----------agttgccactgcgagcgggtaataaagcggctgccgcc---ttactcatttgtaccaaagatagccgacccaaaattataaaaaataattgtatcccggatttt Spar.....: gaggtattgcttcagcagtcgccactgcgggcgggtaacaaagcggctgccgcc--tttactcatttgtcccaaagatggccgacccaaaactataaaaattagtcaggccccagatttc Smik.....: aaggtaccgtccccgccattgccactggcggcgggtaatagaacggctaccgat-gcttacgcatttgtcccaaagatggccgaccaaaaactataa--attagtcagaccccagatttc Sbay.....: aaggcattgtcttagtaaccgcttctgtaagcgggtaataaagcggctaccacctttttagtcatttttctcaaaagtggccgacccaaaactacaaatattagtcaggctct-gacctt consensus: *** ** *** ******** * * ***** ** *** ***** * **** * ******* **** ** ** * ** * * ** * 840~960: Scer.....: aatagatggttggagt--tttattttccaaggtcaggactgcttattgactaccatcttgaaaagtca-ttttctgc-tcaccaccctcaa---ctaaactaaa---aATGTCTTCCTCC Spar.....: aacaaatggtggtagt--tctattttctcacgttaggactacactttaacgatcatcttggaaagtaatttttctac-tcaacatctaaaaaattaaaatcaaacctaatgtcttcttcc Smik.....: aatgaatcatagtggc-atttttcttttaacaccaaggcagtaccttaaccttcatcttgga-agtagtctttcagc-tcataagttccgaa--ttaaat-------aatgtcatcttcc Sbay.....: aatgagtggttgcgatcaccttctttctcgcatcaagaccaagtattcaatactacctggtagaggcataattctccatcgcatcacttaaattagagatcat----aatgtcttcgtct consensus: ** * * * * ** * * * ** * * ** * * ** *** * ** * * * ****** ** ** 960~1080: total....: ====== ======= Scer.....: AAGCGTATTGCCAAGGAATTAAGTGATTTAGGGAGGTATGTTAAAAATAAAATGAATGATTTTTCTTGATCTGTAAAGAAAAAGGA-TTACTAACATGAGTT-TCTTTTTTGAAC-TTTT Spar.....: aagcgtattgccaaagaattaagtgatttagggaggtatgtcaaagaaattaactaatttttttcttgatctgaaaagaaaaaagagttactaacatgagct-tctttttgaact-ttat Smik.....: aagcgtattgcaaaagaattaagtgatttagggaggtatgtcgaa---aagactagctatttgttttattatctgaaaaaaaatga-ttactaaccttcgc--tgttttttaaacaacgt Sbay.....: aagcgtattgccaaggaattaagtgatttagggaggtacgttcaag--aaagctattttacttttttagtatgagaataaagtccaattactaacacatcttgttttctccaaacactgt consensus: *********** ** *********************** ** ** * * * ** * * ** *** * ******** * ** * * * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD DDDDDD BBBBBBB known....: >==================================================================================== 1080~1200: Scer.....: TTCCGAAGAGATCCTCCTGCTTCATGTTCAGCAGGACCTGTAGGGGATGACCTGTATCATTGGCAAGCCTCTATTATGGGTCCTTCAGACTCACCCTACGCTGGTGGCGTTTTCTTTTTG Spar.....: cccggaagagatcctcctgcttcatgttcagcaggccctgtaggggatgacctgtaccactggcaagcctctatcATGGGTCCCTCAGACTCACCTTACGCCGGTGGCGTTTTCTTTTTG Smik.....: ttcccaagagatcctccagcttcgtgctccgcaggtcctgtaggagatgacttgtatcactggcaagcctctatcATGGGTCCCTCAGACTCTCCCTATGCGGGTGGCGTTTTCTTTTTG Sbay.....: ttttatagagaccctcctgcttcgtgttcagcaggcccggtaggagatgatttatatcactggcaagcctccatcATGGGTCCCTCAGACTCACCTTACGCAGGTGGCGTTTTCTTCTTG consensus: ***** ***** ***** ** ** ***** ** ***** ***** * ** ** *********** ** ******** ******** ** ** ** ************** *** known....: ======>= 1200~1320: Scer.....: TCTATTCACTTTCCAACTGATTATCCATTCAAGCCACCGAAGGTAAACTTTACGACCAAAATTTATCATCCGAATATTAATTCGAGTGGTAATATCTGCCTTGATATTTTAAAGGACCAG Spar.....: TCTATTCACTTTCCTACTGATTATCCGTTCAAGCCACCAAAGGTGAACTTTACCACCAAGATTTATCATCCGAATATTAATTCGAGTGGAAATATCTGCTTGGATATTTTAAAGGACCAG Smik.....: TCTATTCATTTTCCTACTGATTATCCCTTTAAACCACCAAAGGTGAATTTTACGACTAAGATTTATCATCCAAATATTAATTCGAGTGGTAATATTTGTCTGGATATTTTAAAGGACCAA Sbay.....: TCTATCCATTTTCCCACTGATTATCCCTTTAAGCCACCAAAGGTGAACTTCACCACCAAAATCTATCATCCGAATATTAACTCGAGTGGTAACATTTGTCTGGATATCCTAAAGGACCAG consensus: ***** ** ***** *********** ** ** ***** ***** ** ** ** ** ** ** ******** ******** ******** ** ** ** * ***** ********** Sbay_spli: BBBBBBB 1320~1440: Scer.....: TGGTCACCGGCGCTAACCCTTTCAAAAGTTTTGTTGTCTATTTGCTCTCTTTTAACAGATGCTAATCCCGACGATCCTTTGGTCCCTGAAATTGCTCAAATCTACAAGACAGATAAGGCT Spar.....: TGGTCACCAGCGCTAACTCTTTCAAAAGTTCTGTTGTCTATTTGCTCTCTTCTAACAGATGCTAACCCCGATGATCCCCTGGTCCCCGAGATTGCTCAAATATACAAGACAGATAAGGCC Smik.....: TGGTCACCGGCGcta......................................................................................................... Sbay.....: TGGTCTCCAGCGCTAACCCTTTCAAAGGTTCTATTGTCTATTTGCTCCCTTTTAACAGATGCTAACCCTGATGATCCCTTGGTTCCTGAGATTGCTCAAATATATAAAACAGACAAGGCT consensus: ***** ** ******** ******** *** * ************** *** ************* ** ** ***** **** ** ** *********** ** ** ***** ***** Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 1440~1560: Scer.....: AAGTATGAAGCCACCGCTAAGGAGTGGACTAAAAAATATGCTGTTTGAttaatttgggctaacggataaattgtgtagacttaccttcctcagcgca-------------cacatcaata Spar.....: AAGTATGAAGCCACCGCTAAGGAGTGGACCAAGAAATATGCTGTTTAAttaatttgttctaaccgatcaattctgtaggcttgccttccttaacgcgcacgcacacacaccacaccaata Sbay.....: AAGTACGAAGCCACTGCAAAGGAGTGGACGAAGAAATATGCTGTTTGAttattcttagctaaacagtcggcc-cgcaagttcggtttttttaca----------------tgcgttagta consensus: ***** ******** ** *********** ** ************* **** * * **** * * * * ** * * * * ** Scer_spli: DDDDDD Spar_spli: DDDDDD 1560~1680: Scer.....: tattatatattctttacgtatacaaacacgcaaattcttataggtatagcgatattagtttgatcaattcccatcacgtaccttgctttctattatttactctttctcct---------g Spar.....: tattatatattctttacatatgcaaatatgcaaatttgtatacgtatatcgacacgagtttgatcgattcctatcataaagcttggtgtccatcgcct--cctttctcct---------g Smik.....: ..............................................................atcctcttcggcgactatcgcc--ttcccagtacttgatatacatgtatt-------a Sbay.....: tattatatattctttacatatgcaaagatctaaatatatatcaatatagt-------ttttaaccaactgcgaccgcgtatgtcagtttttaggcctttcccttcgacttatcttaataa consensus: ***************** *** **** * **** *** **** *** * * * * * * * * Sbay_spli: DDDDDDDDDD 1680~1800: Scer.....: tacctgctactatcaat-taaaaaaaattctccgcgacggggaattgaaccccgatctggcacgcgacaagcgcccattctgaccattaaactatcacgg--a--agaaacaaagcactc Spar.....: tacgagttaatattaat-aaaaatta--tctccgcgacggggaattgaaccccgatctggcacgcgacaagcgcccattctgaccattaaactatcacgg--a--ag-aacaaagcactc Smik.....: tacccaagatttcaaagagagcaaaaaaactccgcgacggggaattgaaccccgatctggcacgcgacaagcgcccattctgaccattaaactatcacggatagtggaaacaaagcactc Sbay.....: tctttggtagtaaaaatatctaaaaaaatctccgcgacggggaattgaaccccgatctggcacgcgacaagcgcccattctgaccattaaactatcacggata--aggaaaataaagctc consensus: * * * ** * * *********************************************************************** * * ** * * *** 1800~1920: Scer.....: acgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattacgccacgcgagctactatttgtcggaaaaacattc------tgattcatctagct-aaatgattg Spar.....: acgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattacgccacgcgagctactatttgtt-gatggtgactg------caacatacctgatt-aagttcctg Smik.....: acgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattacgccacgcgagctgctatttgtt-gatatttcttc------tggaacattagatcattacctgtt Sbay.....: acgatgggggtcgaacccataatcttctgattagaagtcagacgcgttgccattacgccacgcaagctgttatttgttgaaatattattctcaacataatcttttaagctcagaaaaagg consensus: *************************************************************** **** ******* * * 1920~2040: Scer.....: tt-taaaata-tgctaaatttctca---ccaaccttttctcataatg------agcct-aatatg-aaccgctattga-aaatatgtacaaggaagaatatagagaataaagcgtcttgt Spar.....: ttatgcattacttttcaattttttgtatttaatattttctcatagta------agcctaaacatgtaactaccttgaa-aaattaatgccagg-agaacatagagggcaaagtgtgtagt Smik.....: ttcaagattaatattttttctcttttcaataatttcttatagaaataatggttaaccctcacatacaaccatttgaaagaaatataagttagaaaggataaagagtgtggagtgtgttgt Sbay.....: atacggaaga-ctcttattttttacctttcaatatctcccttgaata------agct--ggcgt--taccatcacaga-atg-aaattcaaag-tgaacagttagaatcgagcataatga consensus: * * * * * * * ** * * * * * * * ** * * * * * * ** ** * * 2040~2084: Scer.....: tttaaaggaggaaaagcataaaaaaa------------------ Spar.....: aacaaagctggaaagaggtgctcggttctgaacaggtgtaaaaa Smik.....: atcaagggtaggaagtggtgcttgtat-tgaataggaataaaaa Sbay.....: accaagggtagaaagaggacttcatatgcaagtagcggataaat consensus: ** * * ** { alias......: ['RPS13', 'RPS13B', 'RPS13C'] chromosome.: 4 description: Ribosomal protein S13 (S27a) (YS15) end........: 580447 exons......: [(1, 21), (561, 995)] gene.......: RPS13 introns....: [(22, 560)] length.....: 995 name.......: YDR064W plength....: 331 start......: 579453 tdist......: 579453 type.......: ORF up.........: 1 } Scer: 2 donors and 3 branches Spar: 3 donors and 1 branches Smik: 3 donors and 2 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 388), ('Spar', 388), ('Smik', 388), ('Sbay', 388)] ->[('Scer', 402), ('Spar', 402), ('Smik', 402), ('Sbay', 402)] ->[('Sbay', 652)] ->[('Sbay', 729)] ->[('Sbay', 838)] ->[('Smik', 1065)] ->[('Spar', 496)] ] [ ->[('Scer', 909), ('Spar', 909), ('Smik', 909), ('Sbay', 909)] ->[('Scer', 409), ('Smik', 409)] ->[('Scer', 301)] ] 0~120: Scer.....: tatagtctatcttaaacactaaactacctcc-tataatcatgtagtgtac-tttaaacattttt---t-ta-tcttcatagcaataatataag----------ccttttaccacccataa Spar.....: tataggcatgcttaaaccctaaaccacctat-tagagtcacataaagtac-ttattattttttt---tata-tttttatagtaacaacacgagaccgctaacaccagttaacacccgtaa Smik.....: tatagttttcatcaatcgcttaaccacatgtgtattaccgcattagacac-ttaatatttactt---tttacttttcatagaaacattataaa------agactgctttagaacccataa Sbay.....: taaagtgaatacggaagttt--atcacctaa-tataatcacataggacatatcagtaattagataacttcatcttcaatatctacaaaccaag------actgtttttatccacccacaa consensus: ** ** * * * ** * ** * * * * * * * * * * *** * * * * **** ** 120~240: Scer.....: accataa--agtagacccaaacatt-tttaaaaaaatttt-acgttataatt--ttttctttgtcgttttttctgagcgcgcaaagtagcggtgaaattttgatacgaatgagatttcca Spar.....: accgccat-ggtagacccaaacaca-ctgcacttttttttcgcattgtaatt--tt---tttgttgttttttctgagcgcgcaaagcagctgtgaaattttgatgtgaatgagatttcca Smik.....: accataa----tatgtttggg---t-caagaattttttttagtgttacagtt--tt--aatggttatttttcatgagcgcgcaaagaagctatgaaattttgacgttagagagatttata Sbay.....: acctcaaattaaagacccagacagtgcgcgaatttgtttttattttgtcttcggtcactgtaattaaatttttcaagcgcgcac-gcaaatttgaaattttgaaatagaaagcctgcgtt consensus: *** * * * **** ** * * * * *** ******** * * *********** * 240~360: Scer.....: ctt--ctgtacagatggaaatttatgttggccgacatatatcacagtcgtgatt------gaattaacaatttctttctcattaatatttattct-----aaacggttaaccactaaatc Spar.....: ctta-ttgaacagatggcaatttatcttggccggcatatatcacaatgatgttt------gaaattaaacttctttcctccctctcacttattt-------gatagtaaactactaaagc Smik.....: attg-ttggg-gaatagtaatttatcttcgctcgtatattttcaaatctgattt------taattgtaatccctctccttcctatcagtga----------aagagcaatctactaagcc Sbay.....: gttggatgggcacttcgcaactcatcttaactgtcttaaatgacattttggtttcttcataagttttactctcatttctctcagtctttttctatcaataagacaatcagtcaataaacc consensus: ** ** * * ** * ** ** * ** * * * ** * * * ** * * * * *** * Scer_spli: BBBBBBB 360~480: total....: ====== ====== Scer.....: aatcaacaacaatcagtcaaaATGGGTCGTATGCACAGTGCCGTATGTTTATTAACACCATAGCGAGATATTAATGCAAAAGT--TGCATTGAATAGTTCGCTAAATCAGATGACACTCT Spar.....: aatcaacaacaatcagtcaaaatgggtcgtatgcacagtgccgtatgtcaaataacatcataacgagatattaatgcagaaatgctggattaaataactcgctaaaacagatgacactct Smik.....: aatcaacaacaatcagtcaaaatgggtcgtatgcacagtgccgtatgtctattaacattataacgagatattaatacagatatgctgaattaaattactcgttcaaacagaagacattat Sbay.....: aatcaacaaaaatcagccaaaatgggtcgtatgcacagtgccgtatgtctaactataccataatgagataccaatgcaggtaaactgtattaaataactcac-aaaaaaggagacagtaa consensus: ********* ****** ******************************* * * * *** ****** *** ** ** *** *** ** ** ** **** * Scer_spli: DDDDDD DDDDDD BBBBBBB Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD DDDDDD BBBBBBB Sbay_spli: DDDDDD DDDDDD known....: >============================================================================= 480~600: Scer.....: AATGTGGAATTCAAAAGTGGATTTCTAATATAATTTGTCTCTGTCGGATCACAATTCTATTACAAGTTCCGGT-GTGTACACAGGTATAGTTTATACTGGAGAGTAGTTTCTACTCGCTG Spar.....: aatgtggaattcataagtgagtttctaatatattttgtctctatcggatcacaattctattacaagttccggt-gtgtacacaggtataatttatactggagagtagtttctgctcgctg Smik.....: aatgtgaaattcagaaatgaatttttaatacg--ttacttctctcggatcacaattctattacaagttccggttgtgtacacaggtataatttatactggagagcaaattctgctcgctg Sbay.....: agtgtgggattcaagcaagagtccttaatatt-ttcttctcattcggatcacaattctattacaagttccggt-gtgtacacaggtatattttatactggagagtagtttctgctcgctg consensus: * **** ***** * * ***** * ** ****************************** *************** ************** * **** ******* Spar_spli: DDDDDD known....: ======================================================================================================================== 600~720: Scer.....: TACATTAGCTGGGTGATTCCAATTTCTTTTACAAATATGTTGCATTAGTTTAACAGGTTATACTATCTGCCGT-----TTCT-CAGTATAATTTACGCCGGAAA-ATTACTGATGGCTAG Spar.....: tacattagctgggtgattccaatttcttttacaaatatgatgcattagtttaacaggttatgccatcagctgt-----ttcttcagtgtgttttccaccgggaatatcactggtggctaa Smik.....: tacatttgctgggtgattccaatttctttta---acatgtt--attaattcaatagggtttgtcactagctgc-----tacttgagtgtatcct-cactcgaagtatcactgactgccaa Sbay.....: tacattagctgggtgattccaatttcttttacaaacatgccaaattatcttggcatgtt-tgttaccagttacggatcctcttcattgagttat-cactgaagtcgccgttggtagct-- consensus: ****** ************************ * *** **** * * * * * * * ** * * * * * ** ** Sbay_spli: DDDDDD known....: ======================================================================================================================== 720~840: Scer.....: CC---GCCTTTATGAATTAGTTTTCACAAAGCTCAT-AACAT-AACACGTTAACCTATCGG---A-GGAGAACCAAGATTGAAGAATCACCCGGAATAGTTATACTTT-AATGGAATTGT Spar.....: cc---gcctttatgaattaattttcactaggctctt-aacgt-aatacgttgatctatctcttta-gggagaacaagatggaaggaacacctggaatagtcgtacttt-aatagaattgt Smik.....: tctcagcctttatgaacttgatttcattaggctctttaacattaatacgttaatctatcttcttacgaagaagcagaatggaaggaacacttcgcaaaattgtacttt-aatggaattgt Sbay.....: -----gcctgtatgaaaactattttcataagctcattaacactaatgagttgatctatcat--tatagagaaatgcattagaaagagcactcggaataattgtacttttaatggaattgt consensus: **** ****** *** * **** * *** ** *** * ***** * * * *** * *** * * * * ****** *** ******* Sbay_spli: DDDDDD DD known....: ======================================================================================================================== 840~960: total....: ======= Scer.....: ATGGTCTGAACGA--GGAAATATGT-CATGATACACTTTTCTTC----AAGCCATATGAATCTTCATGTTACTAACATTCGATAAAT-TTTTTGGAATATCCAATTCCACTAAATATTAC Spar.....: atggtctgaatga--gggaatatgtacatgatacacttttcttc----gaaccatatgaatctttgttttactaacatccgataaat-tttttggaatatccaattccactaaatatcat Smik.....: atggtctagatga--gggaatgtgtacatgatgcgcttttctt-------accatataaaactttgttttactaacatttgatgcatatttttggaatttccatttccgaataatgtcat Sbay.....: atgaactgaatgaaagggaatatgtacacgatacatttctttttcattaaatcatataaaactttattttactaacatatttgataattttttggaacatcaaattccgatgaatatcat consensus: *** ** * ** ** *** *** ** *** * ** * ** ***** ** *** * ********** * ********* ** * **** *** * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: DDDD BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: TTT-AAACAGGGTAAAGGTATTTCTTCTTCTGCTATTCCATACTCTAGAAATGCTCCAGCTTGGTTCAAGTTGTCCTCTGAATCTGTCATTGAACAAATTGTCAAGTACGCGAGAAAGGG Spar.....: ttttaaatagggtaaaggtatttcttcttctgctattccatactctagaaatgctccagcttggttcaagttgtcctctgaatctgtcattgaacaaattgtcaagtacgccagaaaggg Smik.....: tct-atacagggtaaaggtatttcttcttctgctattccatactctagaaacgctccagcttggttcaagttgtcctctgaatctgtcattgaacaaatcgtcaagtatgccagaaaagg Sbay.....: ttt-aaacagggtaaaggtatttcctcttctgctattccatattctagaaatgctccagcttggttcaagttgtcctctgactctgtcattgaacaaattgtcaagtacgctagaaaggg consensus: * * * * **************** ***************** ******** ***************************** ***************** ******** ** ***** ** Smik_spli: DDDDDD known....: ========>= 1080~1200: Scer.....: TTTGACTCCATCTCAAATTGGTGTCTTGTTGAGAGATGCTCACGGTGTTACCCAAGCTCGTGTTATCACTGGTAACAAGATCATGAGAATCTTGAAGTCCAATGGTTTGGCTCCAGAAAT Spar.....: tttgactccatctcaaatcggtgtcttgttgagagatgctcacggtgtcacccaagctcgtgttatcaccggtaacaagatcATGAGAATCTTGAAGTCTAACGGTTTGGCTCCAGAAAT Smik.....: tttgactccatctcaaattggtgtcttgttgagagatgctcacggtgttacccaagctcgtgtcattactggtaacaagatcATGAGAATCTTGAAGTCTAATGGTTTGGCTCCAGAAAT Sbay.....: tttgaccccatctcaaattggtgtcttgttgagagatgctcacggtgtcacccaagcccgtgtcatcaccggtaacaagatcATGAGAATCTTGAAGTCTAACGGTTTGGCTCCAGAAAT consensus: ****** *********** ***************************** ******** ***** ** ** ***************************** ** ***************** 1200~1320: Scer.....: CCCAGAAGATTTGTACTACTTGATTAAGAAGGCTGTCTCTGTTAGAAAGCACTTGGAAAGAAACAGAAAGGACAAAGACGCTAAGTTCAGATTGATTTTGATCGAATCTAGAATTCACAG Spar.....: CCCAGAAGATTTGTACTACTTGATTAAGAAGGCTGTCTCTGTCAGAAAGCACTTGGAAAGAAACAGAAAGGACAAGGACGCTAAGTTCAGATTGATTTTGATCGAATCTAGAATTCACAG Smik.....: CCCAGAAGATTTGTACTACTTGATTAAGAAGGCTGTCTCTGTCAGAAAGCATTTGGAAAGAAACAGAAAGGACAAGGATGCTAAGTTCAGATTAATTTTGATCGAATCTAGAATCCACAG Sbay.....: TCCAGAAGATTTGTACTACTTGATTAAGAAGGCTGTCTCTGTCAGAAAGCATTTGGAAAGAAACAGAAAGGACAAGGATGCTAAATTCAGATTGATTTTGATTGAATCTAGAATCCACAG consensus: ***************************************** ******** *********************** ** ***** ******** ******** *********** ***** 1320~1440: Scer.....: ATTGGCCAGATACTACAGAACTGTTGCTGTCTTACCACCAAACTGGAAGTACGAATCCGCCACTGCCTCCGCTTTGGTCAACTAGagtgtttaaatcattta-tt--tcattattttat- Spar.....: ATTGGCTAGATACTACAGAACTGTCGCTGTCTTGCCACCAAACTGGAAGTACGAATCCGCCACTGCCTCTGCTTTGGTCAACTAGagtgtttaaatcatcta-ttcattatttctttat- Smik.....: ATTGGCTAGATACTACAGAACTGTCTCTGTCTTGCCACCAAACTGGAAGTACGAATCTGCCACTGCCTCTGCTTTGGTTAACTAGagtgtttaaatcatttacttcattatttctttat- Sbay.....: ATTGGCCAGATACTACAGAACCGTCTCTGTCTTACCACCAAACTGGAAGTACGAATCCGCTACCGCCTCTGCTTTGGTTAACTAGagtgtttaaatcatccctttcattatttctttatt consensus: ****** ************** ** ******* *********************** ** ** ***** ******** ******************** ** * *** ***** 1440~1560: Scer.....: atgtatatttt-gtataactaaaattgattttttaaacatctctttataaacgataagttgcattttat--tttatttcactattgctaatttttgt--gtccgtttctaacttcaaagc Spar.....: atgtatatttttgtataattaaaattgattttttaaacatttctt-ataaacgataagctgcattttataatttactccagtattcttgttttgaat--ttttttttctagcttcaaatt Smik.....: atgtatatttttgtataattaaaactgattttttaa-catctctacataaaagacaagttgcacttcaatacttttccgcatattttcttttgggagagttttttttttatcttcaaatg Sbay.....: atatgtataat-ttataattaaaattgattttttaaacattttttaacaaa-gataacttgcatttcat--ttcaatttggtctccgctttatcgag--ttcattttgcttgtttttttc consensus: ** * *** * ***** ***** *********** *** * * * *** ** ** **** ** * * * * * * *** ** 1560~1656: Scer.....: tgctcccagcctt--tcctaagg---ttttcagttaccaagtctgcct--gagaaagc-aacagattaacacttttgtaatgaacaagtagaaaat Spar.....: ggctcttaaattg--ctctgcg----ttttca-ttaccaaacgtatttt-aagaaggc-tgcagatcaacgcttttgtaatgaacagataggagta Smik.....: atttcttgatttaaactccaaactttttttcagtt-ttgaacatacctt-aagaaagtgaattgttcatcactttcgtaatgaacaagtagaac-- Sbay.....: aagtattcatatgtgctctta-----tttttactgcacatttcaattttaaagattgcaacgaaagtcttgctgtcgtaatgcctagatagaaact consensus: * * * **** * * * *** * ** * ****** * *** * { alias......: ['UBC13'] chromosome.: 4 description: ubiquitin-conjugating enzyme end........: 630598 exons......: [(1, 30), (299, 730)] gene.......: UBC13 introns....: [(31, 298)] length.....: 730 name.......: YDR092W plength....: 243 start......: 629869 tdist......: 629869 type.......: ORF up.........: 1 } Scer: 6 donors and 2 branches Spar: 6 donors and 2 branches Smik: 8 donors and 2 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1565), ('Spar', 1565), ('Smik', 1565)] ->[('Scer', 1850), ('Spar', 1850), ('Smik', 1850)] ->[('Scer', 2009), ('Spar', 2009), ('Smik', 2009)] ->[('Scer', 2242), ('Spar', 2242), ('Smik', 2242)] ->[('Scer', 2492)] ->[('Scer', 2881)] ->[('Smik', 791)] ->[('Smik', 1765)] ->[('Smik', 2361)] ->[('Smik', 2532)] ->[('Spar', 532)] ->[('Spar', 1798)] ] [ ->[('Scer', 1673), ('Spar', 1673), ('Smik', 1673)] ->[('Scer', 1169)] ->[('Smik', 272)] ->[('Spar', 2080)] ] 0~120: Scer.....: tatggtctgtcgtgttttcttaagaacttttgcagaaggctaggtggaattcgcgctgaaacagatcacaatgaagatctaagaatacagaaacaataaaggttaatgcccagttttaca Spar.....: tatggtctgtcgtatttttttaagaacttttgcagaaggctaagtggaattcacgctggaataaaacacaatgaagatctaagaatacggagataataaaggttaatggccagctttacg Smik.....: tatggtccgtcgtgttttcaaaaaacttcttgcagaaggcttagtggaatt-acgcttaattaatttgtaataatgaactac-aacgcaaagaaattaaaggttgatagaaagcttcat- consensus: ******* ***** **** ** * * ************ ******** **** * * *** * ** *** ** * * * * ******** ** ** ** * 120~240: Scer.....: t-tttttttttttcactttcactttgctagcgagcgatgcgattgagaaaaaaaa---tagaaaattttttcagttgcaaaactacccggctagaaatctggttcgatgcacac-gagta Spar.....: tacttttttttttcactttcactttactagccagcgatgcgattgagaaaaaaaaaaatagaaaaatttttcagttg-aaaactacccggctacatgttcaggttgaagcgcattgagta Smik.....: tgtatttttttttcacttacatgttgtaactgagcgatgcgattgaaaaaaaaa------gaaaaatttttcagttacaaaactacccggctgcaggtttaatcttaaacacat-gagca consensus: * ************** ** ** * ************** ******* ***** ********** ************** * * * * ** *** * 240~360: Scer.....: acaagagattgt-----ttttctatccatggtatttgcttatgaacaggtgactgaagcagcgtata-gtcatgttcag-tctttactatg--tgaagggtaggatgctaatgaccggc- Spar.....: acagcaagatgtaggttttccccacccattgtaatcggttataaataagtaactcaagcagcatatatactatgttcag-tatctactatacatgaacggcagaaagcttattgccggaa Smik.....: acaagaaaagcttggc-tctttcagtcattataattaactgttgataggttg-tgaacaggtttataaactatattgaaacagccattatgtgtgatagatgaagcacctatcaccgggg consensus: *** * * * * *** ** * * * * * ** * ** * **** ** ** * * *** *** * * ** **** Smik_spli: BBBBBBB 360~480: Scer.....: tctttcttatcctccgcggtgttttaaacgatgctcctttcaagtacgctattccgtactattttttactgtgataatttgatcatcaacaacgacga---aaatgacacgtcggcggct Spar.....: tattccttatcctccgcggtgttttaaacgatgtgcttttccact----tacgctcttttatattgtactga---atcttgatcattatcaacgacga---aactggtacctcggcggct Smik.....: cctttcttgttctccgcggcgttttaaacgaagttcttttcaaat--gttactct-tctcgaattttactgg---agcttgatcattggtgacgacgagaaaaatggaacttcggcggct consensus: ** *** * ******** *********** * * **** * * ** * * ** ***** * ******** ******* ** ** ** ********* 480~600: Scer.....: aatttgatatttctttatttgtgtatttccgttgcagatacgagggcgttttacatgacatcaaactattaggaaaatcctt-----ttccaattcagtttgtagtaaaccatgataggc Spar.....: aatttgattctgttttagttg-atattgccataactgaaacgaaaatatcttgtatgatattaagc-attggaaaattcgttct---ttcgactttaatttacagtgggctatggttttc Smik.....: aatttgatatcatttgg--tggatattacgttcttgagttcaatgtttaagagtttataattcatccatcaaaatatttcttagatattcagtcatattctggggaaaatcaccgagctt consensus: ******** ** ** **** * * * * * ** * * ** * * * ** *** * * * * * Spar_spli: DDDDDD 600~720: Scer.....: caca-agacattttttttcaactggggagaaatttaacaaggacgtctttttttatttagac-gataaaaaaccaagaaacaaaactagtaaa----------------ggttcttggaa Spar.....: tatttagacatttcttc-cgacatgggtgaaatgtgacaaggaagtatttctagggaaatattgagaaaaaaatgaaatagaaaaatgggaaatcaacctttattcatcggcattcggac Smik.....: catcctagtatttt------acataa---aggtttgactaaga--ttagttaaaaagcataaggcgaaggatttgatactgcaatttggaataaccactata------taatacccactc consensus: * **** ** * * * ** * ** * * * * * ** * * * ** * * * * 720~840: Scer.....: gcatttat----------ctggatgcaaaataatcgttattcttgggcatgctgacaatgctgaaaaagttatccaaacaaagtagtcaaatattcaaga-tcactattagatcg----- Spar.....: aacgttatggaaagaactctaagctctagctaaatattttccttacccatacacacaccgc-acccccactatacatataaaatcgctacatagcagtttctcacttttggtacggcact Smik.....: tgttttctggca------cggcactccatgatccagtattgtttaattttatatacattttcaaacgaacggttcgtttattgtcaaagcataaagatgcaata-taataatatgtacta consensus: ** * * * * * * ** * *** * * * * *** * * * * Smik_spli: DDDDDD 840~960: Scer.....: ---ctaaacattaatttctcattttgcgacgatactt----------tttttacag-----------aatataaattcatgttaattttgagata----tttaagcgt-----------t Spar.....: cttctacagaacgaagtttggttggaccaagatatttaagtgcctcgtttgtatagtgtcaggaaaaaaggcgaatttgaatcaaatagaaaaaagcttttttgacgtcggggaaagcat Smik.....: taacttcaggatgcaagcgaaagggccatcaaaacct---ttcgctgtttgaatggtaa-attctcaaacacatgtcc---taaagttatagatg---ttttaaaaat----------at consensus: ** * * * * * *** * * ** * * ** * * * *** * * 960~1080: Scer.....: tcatctctttttttctgggctaaaaaagcttttcgatgt-----ctagaaatactac------caacaaatacttgaatgcaga---acaagaaggaaaaaagc-----ttgatacta-- Spar.....: atacaacattggtacttgttcagaaaccgtcgttgatataaa--tcaggagtattgtgtttgacaaaagaaatttataaatcgatagatgggaaagacaaaaatagcgattaataacaac Smik.....: agtaaNNtNtNNtNNaNgNNNaNNaaaNNNtNNtNNNNNNNNNNNNNNNaNNNNNaaNNNNNNNNaNNNcNNtNNNNNtNtNNaaNaacNNNNNNgNNNNNNgcaNNNNNNagNNccg-- consensus: * ** * * * * *** * * *** * ** ** * ** * *** * * ** * ** * *** ** **** ** ** 1080~1200: Scer.....: ----------------------------------gtcaagctt--aatgattagattctgcgggagccgcgggaac-------agaaaatactaacgtttt----aaatatcattt---a Spar.....: accctttttttcaaagaaacttttcccatagtttgtcaagcttttgatgcgtaatttgagcaaagaccgttacaaatctttcaagtagttagtagtattattaataaatattattt---g Smik.....: ------------------------------gctctctagtgtttctttctccaatttattgatagaatactgtaaagca--aaaatagaaactagtgatttaaacaaaacttggtccaaa consensus: * ** * * ** ** * * * ** * * *** * * Scer_spli: BBBBBBB 1200~1320: Scer.....: aa---------aaat---------taccaaagtacaataagcagttttttctttgccttctctacatgtgaacaaatataatgggcatctaa---caggaatttgttttcctttaaacca Spar.....: aaccccccaagaaataactttccctacaaagacgtaataatctgcttttcctttcctttttccatatgttagcaagtatataaggcgtctaa---catgaccttgttttcctttatatca Smik.....: aaaggccaaatagatatcct-cgctacaaatggttagtaacctacattatctcttgtttatcctcagaggagcaaatatataatgcatcccaatccatatcacattcttcgttcatacca consensus: ** * ** *** ** * *** * ** ** * ** ** * * *** **** ** ** * ** * *** ** * * ** 1320~1440: Scer.....: tcaaagagaatagttcagttaattatgccgcatccgtattgttacccgaaattatggtgtttttaaaacaaaggataagtgattcat-tgaaagatggcgcgccaccacgaaccaaaaca Spar.....: aatgaaagatta-ttcaat-agttatatc-catctatattgttacccgaaattacgatgtttttaaaacaaaggataagcgatttagatgaaggatggcgcgccaccacgaaccagaaca Smik.....: aataaaaggattattcgac-attgctccaccatgaaatttgttacccgaccttggaacctttttgNaNNNaaNgaNaagNNNtNNaNNtNNaNNNtNgNgNgNcNNNNNgNaNNaNaaNa consensus: * ** * *** * * * *** *********** ** ***** ************** **** * **** ********************** **** 1440~1560: Scer.....: cctctatagagaata--gtactttacactcttctgttctttttttttccaatattagcaaataaggtcaggttca-ttgtaacatagtta--gaaATGGCATCATTACCCAAGAGAATAA Spar.....: tctctctataaacgat-atacttcacattttcctgctctttttc------aaattagcaagttagttcagatcaaattataacatattta--gaaatggcatcattacctaagagaatta Smik.....: NNtaNcNNNNNNcaNgNNNNNtctatgcataattaagtatttttc-----aaaatttcaatcgagt---agtcccattatagcataactacaaaaatggcctcattaccaaaaagaatta consensus: ** * ** * * * * **** * * **** * * * *** ** * ** ** **** ** ******* ******** ** ***** * 1560~1680: Scer.....: TCAAGGTATGTTCAAACAAGAGCAGTGGATTATATACGAAATCTGAAGTGACGTTTTCGTCTGAGCCGTCACACTCTACACTGTTTC-CTCTTGATAATGGCTAGAACTTACATACTAAC Spar.....: ttaaggtatgtttagacaagggcagcgaatgatatacaatatcaggcgtgatgttttcgtctcaggcgtcctatcgtacaccgttttattcttgataaaggctgaaattaatatactaac Smik.....: tcaaggtatgttttaatagctatagtagattatatacaaaatctgacat-------tcgccctata-gtgccatcccgtactgattt-ctcataatagaatcttaaacgaatatactaac consensus: * ********** * * ** ** ****** * *** * * *** * * ** * ** * ** ** * *** ** ** * ******** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB known....: >================================================================================================================== 1680~1800: Scer.....: GCAAAACTTCCAAAACAAGAAGGCTTTTTTTGTCCAGTTTGTAGCAGCGTTCCGCCTTCCCTTTGTCCATATCCGCAAACGCT-CATATGGAGGGAATTCAACAGAACAAACTACTAGGG Spar.....: tcgaaaacatccaaataagaaggccttttttgtccagtttgtagcgacgttctgccttccctttatgtatatccgcaactgttacatatg-aggggatctaacagaacaggctacttggt Smik.....: tcgagatgttgaaaatat---ggccgtttctgaccggtttgctgcaatgttctgcctttctcttttctcttctctgaatagttgcgtatg--agggattcagcagaacttgctacttggt consensus: * * * *** * *** *** ** ** ***** ** **** ***** * ** * * * ** * * * **** ** ** * ****** ***** ** Spar_spli: DD Smik_spli: DDDDDDDD known....: ======================================================================================================================== 1800~1920: Scer.....: CAGAAAACGCAAAGTCTTTGTGAACTTTCATATAGGAAACTGAGAAATTAGTAAGTGACCCAGTACCTGGCATTACAGCAGAACCACATGACGACAACTTACGTTACTTCCAAGTAACAA Spar.....: cagtaaacgcaaggtacttcttaactttcttttaggagactgagaaattagtaagtgatccagtacctggtatcacagcagaaccacatgatgacaacttacgctacttccaggtaacaa Smik.....: tacctaacacaaagcctttctcaaaatttttttaggagactgagaagttggtgagtgatcctgttcctggcattacagcagaaccacatgatgacaacctacgctacttccaggtaacaa consensus: * *** *** * ** * ** ** * ***** ******** ** ** ***** ** ** ***** ** ***************** ****** **** ******** ******* Scer_spli: DDDDDD Spar_spli: DDDD DDDDDD Smik_spli: DDDDDD known....: =================================>= 1920~2040: Scer.....: TCGAAGGCCCAGAACAGTCACCATATGAAGACGGTATTTTCGAATTAGAATTATATCTGCCTGACGACTATCCAATGGAAGCACCGAAAGTACGTTTTTTAACCAAGATATATCATCCCA Spar.....: tcgaaggcccagaacagtcgccatatgaagacggtgttttcgaattggaattgtacctacctgacgactatccaATGGAAGCACCAAAAGTACGTTTTTTAACTAAGATATATCATCCCA Smik.....: tcgaaggcccagaacaatcgccatatgaagatggtattttcgaattagaattgtatctgcccgacgactacccaATGGAAGCGCCGAAAGTACGTTTTTTAACTAAGATATATCACCCCA consensus: **************** ** *********** *** ********** ***** ** ** ** ******** *********** ** ***************** *********** **** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2040~2160: Scer.....: ATATTGATAGGTTGGGCCGTATATGTCTTGATGTGCTTAAAACTAATTGGTCACCCGCTTTACAGATCAGAACCGTCCTGCTGTCCATTCAAGCACTGTTGGCTAGCCCTAATCCTAATG Spar.....: ATATTGATAGATTGGGCCGCATATGTCTTGATGTGCTTAAAACTAACTGGTCCCCCGCTTTACAGATTAGAACTGTGCTACTCTCCATTCAAGCTCTGTTGGCTAGCCCCAATCCTAATG Smik.....: ATATCGATAGGTTAGGTCGCATATGTCTTGATGTACTTAAAACTAATTGGTCACCCGCTTTACAGATCAGAACTGTGCTACTCTCCATTCAAGCCTTGTTGGCTAGCCCTAACCCCAACG consensus: **** ***** ** ** ** ************** *********** ***** ************** ***** ** ** ** *********** ************* ** ** ** * Spar_spli: BBBBBBB 2160~2280: Scer.....: ATCCGCTAGCTAATGACGTCGCTGAAGATTGGATAAAGAATGAGCAAGGTGCCAAAGCTAAGGCTCGCGAATGGACGAAATTGTATGCAAAGAAGAAACCCGAGTGAtcatttctgtata Spar.....: ATCCGTTAGCTAATGACGTTGCTGAAGATTGGATTAAGAATGAGGAAGGTGCCAAAGCCAAAGCTCGCGAATGGACTAAGTTGTATGCCAAGAAGAAACCATAGtgaccctttctgtata Smik.....: ACCCTCTAGCCAATGATGTTGCTGAAGATTGGATCAAGAATGAAGTAGGTGCCAAAGCTAAGGCTCGCGAATGGACAAAACTGTATGCCAAGAAGAAACCCGAGTAGccattcatgtgta consensus: * ** **** ***** ** ************** ******** ************ ** ************** ** ******* *********** *** * ** *** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2280~2400: Scer.....: agtttt-ctcaactgaatatataaatatatat-cattactatgctgctgctgctgcaaaaaaaaaaaaatttacgataaatgcaaaaaccatagatggtcatctaaagaggcgcatttct Spar.....: agtttttctcaactgagtatataaatatatat-cattcctatgctgctgc-----------acaaaaaaatcacgataaatgtataaatcacaaatg-tcatctaaaggggcgcattcct Smik.....: tttttctatcacttatatatatatatatatatatatatatatattactgttaagctgtagcacaataaaat---gataaatgtatgaatcgaaatttttcattttaagaaacacattttt consensus: *** *** * ****** ******** ** *** * *** * ** *** * ******** * ** * * * **** * *** * **** * Smik_spli: DDDDDD 2400~2520: Scer.....: caaaaatgtagcgtcgctaaaatggttttctctacctttagttttacgccagatttttactagacgcgttttagtttactttttcctaccctgttcgttttttttttttttttcgcacca Spar.....: taaaaatgtagcatcgctaaaattattgtctctacgtttagttttacgccagatttcaactaaacgcgttttagtttccttttttctgcccttttcgtattttttttttttt-cgcacca Smik.....: taattatgtagcatcgctaaaatgattttctctaactttaattatacgccagaattttgctagacgcgttttagtcta-ttttttcaatccttttcgttttttttct------cgcacca consensus: ** ******* ********** ** ****** **** ** ********* ** *** ************ * ***** * *** ***** ****** * ******* Scer_spli: DDDDDD 2520~2640: Scer.....: aatttttcaaccgttc----catggaagccgggatcgaccgtcctacac--taatgtaagcattagtccgctcgagggtccacgtttaattccggatcataaagtttttaatgtatttct Spar.....: aatttttcaaccgttc----catggaagccgggattgatcgtcctacaccgtgatgtaagcactagtccgctcgagggtccacgtttaattcgggatcataaagttgacaatgtatttct Smik.....: aatttttcaaccgttcgttccatggaagccgggattgactgccctacaccgtgatgtaagcaatagtccgctcgagggtccacgtttaattccggatcattaaattgtcgatgtattgct consensus: **************** *************** ** * ******* * ********* ***************************** ******* ** ** ******* ** Smik_spli: DDDDDD 2640~2760: Scer.....: tgttattatcgcttttgttgatcttacctgctattgcatagagacagacaat---agacaaaccag-attcatcgcttactcggtggtttacctct------tagtattactttcgctgc Spar.....: tgttattatcgcttttgttgatcttaccttattttgagtagaaacagacaatcatagacaaacctg-attcgtcgcttattcggtggtttacctctagtgtttttttttactttcgctgc Smik.....: agttattgtcacttttgttgatcctatcatattctgagtagtgatagacattcatagacaaacctctattcgttgctcattcagttgtttactctc-----tagtatttactctcgctgc consensus: ****** ** ************ ** * * ** *** * ***** * ********* **** * *** * ** ** ****** ***** ******* 2760~2880: Scer.....: ttctttctgctgtgacagagtctcaggtgaaacaaattaatcaaaa--gagttgattaaacgcaagagcgttgagagagtttaaaaaaccatccgtttctttttctatttgctttcacat Spar.....: ttctttctgctgtaacagagtcccaagtgaaacagattaatcaaaaaagagtggattaaacgcaagagcgttt-gggagtttgaaaaaccgttagtttctgtttctatttgcgtttacat Smik.....: ctgtcactgctgttacagagttttaagtggaacagattaatcaaag--aaagttattaaacacaagaacgtcggtggagtttgaaaa-cagtccgtttctgaatctattcgattttttca consensus: * * ******* ******* * *** **** ********** * ******* ***** *** ****** **** * * ****** ****** * ** 2880~3000: Scer.....: tgttcgtactttgttccttttt-tcctaatccttttaataatagaattctttaaaaagaatcatagcataaactcaacacatat------------------------------------ Spar.....: ccttcgtactttgttcttttct-tctcaatcctttttaataaacaaagtttcaaaaagaaccatagcataaactcaacacatat------------------------------------ Smik.....: tatttttagttagttcttttccatctcaatcattgcacaaaaagaagtcttaaaaaagaaccatagcatatactcaacacatatatgtcaagtccctccaaacccacatcacccttcgtg consensus: ** ** ** **** *** ** **** ** * * ** ** ******** ********* ************* Scer_spli: DDDDDD 3000~3113: Smik.....: gatgatactgagcatgggccaggatcaggatcaggatcaggatctaacggtctctcgtccatgtcacctttgacgatagttttcaattgaaaggcccagcaagcacatgggaa { alias......: ['SAC6', 'ABP67'] chromosome.: 4 description: fibrim homolog (actin-filament bundling protein) end........: 715372 exons......: [(1, 21), (133, 2040)] gene.......: SAC6 introns....: [(22, 132)] length.....: 2040 name.......: YDR129C plength....: 680 start......: 713333 tdist......: 713333 type.......: ORF up.........: 0 } Scer: 7 donors and 1 branches Spar: 2 donors and 2 branches Smik: 0 donors and 0 branches Sbay: 6 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 394), ('Scer', 398), ('Spar', 394), ('Sbay', 394)] ->[('Scer', 2356), ('Spar', 2356), ('Sbay', 2356)] ->[('Sbay', 962)] ->[('Sbay', 1229)] ->[('Sbay', 2529)] ->[('Sbay', 2598)] ->[('Scer', 666)] ->[('Scer', 1260)] ->[('Scer', 2482)] ->[('Scer', 2751)] ] [ ->[('Scer', 480), ('Spar', 480), ('Sbay', 480), ('Sbay', 484)] ->[('Spar', 1413)] ] 0~120: Scer.....: tcatatc-ccttctcacattttttacacaggaagtaagcaagttatgttatatttccgacactataattaattcttagcagttaaaggtgctttgtctatattacatttacatacagctt Spar.....: ttatatcgcttttttacattttttgcaccgggtgtaaacagattgtattatattcctgacactataactgattttaaagagttaaa-atgctttgtatataacgaatttacatacaac-c Sbay.....: tctcatc-gctctttacattgtaagcac--gacgtgacttga-tataccacaatcctaactctataaccaactttagatagctgag-ctttttcatgtatagatgcaatatgtacaagtc consensus: * *** * * ***** * *** * ** * * * * * * * ** ****** * * * ** * * * ** * **** ** **** 120~240: Scer.....: gagtgatcctgaccggatatagggtcctattttcttacgtgaacggcttttcttcttgtt--cccgatggccttcatgtgaaaaagcactcctcgggaggcggaaaaatat-caaaagta Spar.....: aagcgatcttaacctggtatagggtcctattctctaaagtgaacggctttt-ttcttgtt--cccgatggccttcatgtgaaaaagcactcctcgggaggcggaaaaatat-caaaagta Sbay.....: aattggccttggctggatacagggtcctactttttttaatgaacggcttttcttgtagttgagccgatgagctt------aagcacctttctcagggaggcggaaaaacatccgaaagta consensus: * * * * * * ** ********* * * * ************ ** * *** ****** *** ** * * ** ************** ** * ****** 240~360: Scer.....: cggggcgaagttt-ataatgaagatttatcgatataaattttggttatttcaggagaacaagaaagctctttacactaaaattatcagagaagaagct-gatatattagccctaaggagt Spar.....: cggggcgaagttt-ataatgaagatttatcgatataaatattagttatttcaggagaacaagaa--ccctttacaccataattataagagaaggagct-aatatattagcgctacgggac Sbay.....: cggggcgaagtttcacagcgaaagtttatcgatataaatgattgttgtttcaggagaacaaaga-gccctttgcaacttggtcactagagaagaggccagacgaaatagcgttaacgact consensus: ************* * * *** *************** * *** ************** * * **** ** * * ******* ** * * **** ** * 360~480: total....: ========== Scer.....: acaccaaaacacaATGAATATTGTCAAATTACAAGTATGTATGCCTTTCTCGAATTCCCACACTGCTGAGCACAGTGAAAAAGTTTTTTCTACCTTTTAGGTTGTAATAAACGTTTCATA Spar.....: acattaacacataatgaatatcgttaaattacaagtacgtatccttttctcgagtacccgccctacagagcacact-agaactttttttccaccttttaggttctaatgactgtttcata Sbay.....: acattaagaagtgatgaatatcgttaaattacaagtatgttcctttttcgcaagttctcgcacaatgttata-----tgagactttttac--ccttttaggctttaattgac-tcccata consensus: *** ** * ******** ** ************ ** **** * * * * * * * * * ***** * ********* * **** * **** Scer_spli: DDDDDDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD known....: >===================================================================================== 480~600: total....: ======= Scer.....: TACTAACAAACTCTTCTGCGATTAGAGAAAATTTCCAATTTTGACTCAAGAGGATCTTTTTTCCACAATTGAAAAGTTCAGAGCCATTGACTTAGATGATAAAGGATGGGTTGAAAAACA Spar.....: tactaacaaactcttatcaaactagagaaaatttccaattttgactcaagaggaccttttttccacaattgaaaaattcagggccattgacccagatgataaaggatgggttgaaaaaca Sbay.....: tactaactaacagttattcaaatagaggaaatttccaattttgactcaagaggaccttttcggcacaattgaaaagttcagagccattgacttggacgacaaaggctggattgaaaaaca consensus: ******* *** ** * * ***** ************************** ***** ************ ***** ********* ** ** ***** *** ********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBBBBBB known....: =======================>= 600~720: Scer.....: GCAAGCTCTAGAAGCGGTGTCCAAAGATGGTGATGCTACTTATGACGAAGCAAGAGAAACCCTGAAGCATGTGGGTGTGGATGCGTCAGGCCGTGTTGAACTGGACGATTACGTCGGGTT Spar.....: gcaagctttagaggcggcgtccaaagacggtgatgccacttatgacgaagcaagagaaaccctgaaacatgtcggtgtggatgcgtcaggtcgtgttgaactggacgattatgtcggttt Sbay.....: acaagctatagaggctgtttccaaagatggtgacgccacttatgacgaagcaagagaaaccttgaaacatgtcggcgtggatgcatcagggcgcgttgaattggatgactacgtcggatt consensus: ****** **** ** * ******** ***** ** ************************ **** ***** ** ******** ***** ** ****** **** ** ** ***** ** Scer_spli: DDDDDD 720~840: Scer.....: GGTTGCAAAATTAAGAGAATCTAAAACAGGAGCTGCTCCACAGACCACTTTCAACGTAGCACCTAACTCAACCCCTATTGTTTCCACTGCTGCCACAGGACTACAGCACAAGGGTAAGGG Spar.....: agtcgcgaaattgagagaatctaaaacgggagcggctccacagaccactttcaatgtcgcacctaattcagcccctattgcttccactgccgccactgggctgcagcacaagggtaaggg Sbay.....: gattgccaaattaagagaatctaaatcggcaccagctccacagaccagttttaatgtggcacctacttcaacccctattgcatccagtgctaccactgggctgcaacataagggtaaggg consensus: * ** ***** ************ * * * * ************* *** ** ** ******* *** ********* **** *** **** ** ** ** ** *********** 840~960: Scer.....: TACTCAAGCCAAGATTATTGTTGCTGGCTCCCAAACAGGTACTACACATACCATCAATGAAGAAGAAAGACGTGAATTTACTAAACATATCAATAGCGTCTTGGCGGGAGACCAAGATAT Spar.....: tacccaagccaagattattgttgctggttcccaaacaggtactacacataccatcaacgaagaagaaagacgtgaatttactaaacatatcaatagcgttttagcaggagaccaagatat Sbay.....: tgctcaggcaaagattattgttgctggttcccaaacaggtaccacccacaccattaatgaagaagaaaggcgtgaatttaccaaacacattaacagtgtcttggcaggagatcaagacat consensus: * * ** ** ***************** ************** ** ** ***** ** *********** *********** ***** ** ** ** ** ** ** ***** ***** ** 960~1080: Scer.....: AGGTGATTTGCTTCCATTTCCTACTGATACTTTCCAATTATTTGATGAATGTAGGGATGGGTTGGTGCTATCTAAGTTGATCAACGACTCTGTTCCTGATACTATCGATACAAGAGTTTT Spar.....: tggtgacctgcttccatttcctactgacactttccaattatttgatgaatgcagggatgggctggtgctgtctaaattgatcaacgactctgttccagatactatcgatacaagagtttt Sbay.....: tggtgagttgcttccatttcccaccgatactttccaattatttgatgaatgtagagatgggttggtattatctaagttaatcaatgactccgttccagatacaattgatacaagagtttt consensus: ***** ************* ** ** *********************** ** ****** **** * ***** ** ***** ***** ***** ***** ** ************** Sbay_spli: DDDDDD 1080~1200: Scer.....: GAATTGGCCTAAGAAGGGTAAGGAATTGAATAATTTTCAGGCTAGTGAAAATGCTAATATTGTTATTAATTCTGCAAAAGCCATTGGTTGTGTCGTTGTTAATGTTCATTCCGAGGACAT Spar.....: gaactggcctaaaaagggcaaggaattgaataatttccaagctagtgaaaatgcaaatattgttatcaattccgcaaaagccatcggttgtgtcgttgttaatgttcattcagaagacat Sbay.....: gaactggcccaaaaagggtaaggaattgaataactttcaggctagtgaaaatgccaatatcgtgatcaattctgcaaaggccattggttgtgtcgtcgttaatgttcattcggaagacat consensus: *** ***** ** ***** ************** ** ** ************** ***** ** ** ***** ***** ***** *********** ************** ** ***** 1200~1320: Scer.....: TATTGAAGGTAGAGAGCATTTGATCCTGGGTTTGATTTGGCAAATTATTAGGAGAGGTTTGTTAAGTAAAATTGATATTAAGCTGCATCCTGAGTTATACCGTCTATTGGAGGATGATGA Spar.....: cattgaaggtagggagcatttaattctaggtttgatttggcaaatcattagaagaggtttgttgagcaaaatcgacattaagttgcatccggaattatatcgtctgttagaggatgatga Sbay.....: tattgaaggtagagaacatctgattttaggtATGATCTGGCAAATTATAAGAAGAGGTTTGTTGAGTAAGATCGATATCAAATTACATCCTGAATTATACCGTTTATTGGAAGAAGACGA consensus: *********** ** *** * ** * *** **** ******** ** ** *********** ** ** ** ** ** ** * ***** ** ***** *** * ** ** ** ** ** Scer_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: AACGTTGGAGCAATTTTTGAGGTTGCCTCCGGAGCAAATTCTACTACGTTGGTTTAACTACCATTTGAAGCAAGCAAACTGGAACAGAAGGGTTACCAATTTTTCAAAAGACGTGTCTGA Spar.....: aacgctggagcaatttttaagattacctcccgaacaaatcttattgcgttggttcaactatcatttgaaacaggcaaactggaacagaagagttactaatttttcaaaagatgtctctga Sbay.....: AACTTTGGAACAATTCTTAAGATTGCCTCCAGAGCAAATCTTACTGCGTTGGTTCAACTACCATTTAAAGCAGGCTAAGTGGAATAGAAAAGTTACAAACTTTTCCAAAGATGTTTCTGA consensus: *** **** ***** ** ** ** ***** ** ***** ** * ******** ***** ***** ** ** ** ** ***** **** ***** ** ***** ***** ** ***** Spar_spli: BBBBBBB 1440~1560: Scer.....: TGGTGAAAACTATACTATCTTGTTGAACCAGTTGGACCCCGCCTTGTGTTCTAAGGCACCATTACAAACCACAGATTTAATGGAGAGAGCTGAGCAAGTTTTACAAAATGCTGAAAAGCT Spar.....: tggtgagaattacaccattttattgaatcagttggaccccactttgtgttccaaggcaccattacaaaccacagacctaATGGAGAGAGCTGAACAAGTTCTACAAAATGCTGAAAAACT Sbay.....: TGGTGAAAACTATACCATCTTACTGAATCAATTGGATCCTACGTTGTGTTCTAAGGCGCCTTTGCAAACTACTGACCCATTGGAAAGAGCAGAGCAGATTTTACAAAACGCTGAAAAATT consensus: ****** ** ** ** ** ** **** ** ***** ** * ******** ***** ** ** ***** ** ** * **** ***** ** ** ** ******* ******** * 1560~1680: Scer.....: AGATTGTAGAAAGTATTTAACCCCAAGTTCATTAGTTGCGGGGAACCCTAAATTAAACCTGGCTTTCGTGGCACATCTATTCAATACACATCCTGGATTAGAGCCTATTCAGGAAGAGGA Spar.....: AGATTGTAGAAAGTACTTAACTCCAAGTTCTTTAGTTGCGGGAAACCCCAAGTTAAACTTGGCCTTCGTGGCTCATCTGTTTAATACTCATCCTGGTTTGGAACCTATCCAGGAAGAGGA Sbay.....: AGAATGTAGAAAGTATTTGACCCCAAGTTCTTTGGTCGCAGGGAACCCTAAATTAAATCTGGCCTTTGTTGCTCACTTGTTCAACACTCATCCTGGATTAGATCCTATTAAAGAAGAGGA consensus: *** *********** ** ** ******** ** ** ** ** ***** ** ***** **** ** ** ** ** * ** ** ** ******** ** ** ***** * ******** 1680~1800: Scer.....: AAAGCCTGAAATTGAAGAATTTGACGCCGAAGGTGAGAGAGAGGCAAGAGTCTTTACCTTATGGTTGAACTCTCTTGACGTTGATCCACCTGTCATTTCGCTGTTTGATGATTTGAAGGA Spar.....: AAAACCTGAAATTGAGGAATTTGATGCAGAAGGTGAAAGAGAGGCAAGAGTTTTTACTTTGTGGCTAAATTCTCTTGACGTCGATCCACCTGTCATTTCGTTATTTGATGACTTGAAGGA Sbay.....: AAAACCCGAAATTGAGGAATTTGATGCTGAAGGTGAAAGAGAAGCAAGAGTTTTCACTTTATGGTTGAACTCCTTAGATGTTGACCCCCCAGTTGTTTCCTTATTTGATGATTTGAAGGA consensus: *** ** ******** ******** ** ******** ***** ******** ** ** ** *** * ** ** * ** ** ** ** ** ** **** * ******** ******** 1800~1920: Scer.....: TGGTTTGATATTATTGCAAGCTTACGAAAAGGTGATGCCCGGTGCTGTTGATTTTAAACATGTCAACAAAAGACCGGCCTCGGGTGCAGAGATATCCAGATTCAAAGCCTTAGAAAACAC Spar.....: TGGATTGGTATTATTGCAAGCTTATGAAAAGGTGATGACCGGTGCGGTTGATTTCAAACATGTTAACAAAAGACCTGCTTCAGGTGCAGAGATCTCCAGATTCAAAGCCTTAGAAAACAC Sbay.....: TGGTTTGGTGTTGTTGCAAGCTTATGAAAAAGTCATGCCCGGCGCAGTTGACTTCAAACATGTCAATAAGAGACCCGCTTCAGGCGCTGAAGTATCCAGATTCAAAGCCTTAGAAAACAC consensus: *** *** * ** *********** ***** ** *** **** ** ***** ** ******** ** ** ***** ** ** ** ** ** * ************************** 1920~2040: Scer.....: CAACTATGCAGTCGACTTGGGCAGAGCCAAAGGATTTTCTTTGGTTGGTATCGAAGGATCTGATATTGTAGATGGTAACAAATTACTGACCTTAGGGTTAGTGTGGCAATTGATGCGTAG Spar.....: CAACTATGCAGTCGACTTGGGCAGAGCCAAGGGATTTTCTTTAGTTGGTATTGAAGGATCTGATATTGTAGACGGTAATAAATTACTGACCTTAGGGCTAGTGTGGCAATTGATGCGTAG Sbay.....: CAACTATGCTGTTGACTTAGGCAGATCGAAGGGATTCTCTTTAGTGGGCATCGAAGGTTCTGATATTGTAGACGGTAATAAATTGTTGACATTAGGGCTAGTGTGGCAATTAATGCGTAG consensus: ********* ** ***** ****** * ** ***** ***** ** ** ** ***** ************** ***** ***** **** ****** ************* ******** 2040~2160: Scer.....: AAATATTTCGATAACCATGAAGACATTATCCTCAAGTGGTAGAGACATGAGTGATTCTCAAATATTAAAGTGGGCCCAAGACCAGGTAACTAAAGGTGGTAAAAACTCTACCATTAGATC Spar.....: AAATATTTCGATAACTATGAAGACATTATCGTCGAGTGGCAGAGACATGAGTGATTCTCAAATATTAAAATGGGCTCAAGACCAAGTAATTAAAGGCGGTAAAAGCTCCACCATTAGATC Sbay.....: AAACATTTCCATTACCATGAAGACATTATCTTCGAGTGGTAGAGATATGAGTGATGCTCAAATATTGAAATGGGCTCAGGACCAAGTCACTAAAGGTGGCAAAAACTCTACAATTAGATC consensus: *** ***** ** ** ************** ** ***** ***** ********* ********** ** ***** ** ***** ** * ****** ** **** *** ** ******** 2160~2280: Scer.....: ATTTAAGGACCAAGCTTTATCAAACGCCCACTTCTTATTGGATGTTCTGAATGGTATCGCGCCGGGCTATGTTGATTATGATCTAGTCACCCCTGGTAACACCGAGGAAGAAAGGTACGC Spar.....: ATTTAAAGATCAAGCTTTATCAAACGCCCACTTCTTATTGGATGTTTTGAATGGTATTGCACCAGGCTATGTTGATTATGATCTAGTCACCCCTGGTAACACGGAAGAAGAAAGGTACGC Sbay.....: ATTTAAAGACCAAGGTCTATCAAACGCACATTTCCTATTGGATGTCTTGAACGGAATTGCCCCAGGCTATGTTGATTATGATCTAGTCACCCCTGGTAACACTGAAGAAGAAAGATACGC consensus: ****** ** **** * ********** ** *** ********** **** ** ** ** ** ************************************** ** ******** ***** 2280~2400: Scer.....: AAACGCAAGATTGGCTATTTCTATTGCTAGAAAGTTGGGTGCTTTGATTTGGTTGGTGCCAGAAGATATCAACGAAGTTCGTGCAAGATTAATTATTACTTTTATCGCTTCGTTAATGAC Spar.....: AAATGCAAGATTGGCTATCTCCATCGCCAGGAAGTTGGGTGCTCTGATTTGGTTGGTGCCTGAAGATATCAACGAAGTTCGTGCAAGATTAATTATTACTTTTATTGCTTCGTTAATGAC Sbay.....: CAATGCAAGATTGGCTATCTCGATCGCCAGAAAGCTGGGTGCTTTGATTTGGTTGGTGCCTGAAGATATCAACGAAGTTCGTGCAAGATTGATTATTACTTTTGTAGCTTCGTTAATGAC consensus: ** ************** ** ** ** ** *** ******** **************** ***************************** ************ * ************** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 2400~2520: Scer.....: TTTGAACAAATGAgccaacaaacaactttcgtaacctgttttctactcagctttcttgttccaatgctccgttatacgattggttaagtgtacaacaatatatagcctcaagtatttctg Spar.....: TTTGAACAAATGAgcctgtaagcagcctttgtattcagtttt-------------ttgttccaatgctccgttataccaccggttaattttacaacaatatatagcctcaagtatctctg Sbay.....: CTTGAACAAATAAacttgcaaatagctattatgcttgagtacct-----------ttgtatttacggttcttttcacaatcggtttattgttcaacactatatagcctcaagtatcttt- consensus: ********** * * ** * * * * * **** * * * * ** ** * **** * * * ***** ***************** * * Scer_spli: DDDDDD 2520~2640: Scer.....: aagtttttaatatgtaataataga-tttcaacttccacctacttttattcgtgattactgagccattgtaaaaatgcctccaacgctcaatgattccgttgtcgtcttctatcatgcctc Spar.....: aagttttgaatatgtaataataga-tttcaacttccacctcccttttttcgttattattgactcattaagaaaccgcttccaatcctc----------tttatattttctgctatgcttc Sbay.....: ctgtttttagtatgtaataatagattttcaacttccatccattatcgtttcaaaacaagaccttctagtgctttcagtgtatgtacttggaaacaatattcacattaccgttcattactc consensus: ***** * ************** ************ * * ** * * * ** ** * * ** ** Sbay_spli: DDDDDD DDDDDD 2640~2760: Scer.....: tactggattaaaaaatcgt-----aaataaactacttattaagccatatatc-ctgtgaactttttttcatatacatccaaggttctt----tgaaata--tgcagaaaatgtacgtgat Spar.....: tactgcataaatataacattcgtaaaataaattaattatcaagctatatatt-ctgtgaacttctttccatat--atccgaaatcatt----taaaata--tgcagaaaacgtaggtgat Sbay.....: ttgttt-tcaacacacta------aagttatcttcttgtctttttttacatcaatctatagcggaaaataaataaaatcgaaatatatgaaataaaataattgcaaacaactgttcctat consensus: * * * ** * * ** * * * ** * ** ** * * * * ** * * * * * * ***** **** * ** ** Scer_spli: DDDDDD 2760~2771: Scer.....: agttaagctt- Spar.....: aatcaagcttt Sbay.....: aatcaagctt- consensus: * * ****** { alias......: ['RUB1'] chromosome.: 4 description: ubiquitin-like protein end........: 733917 exons......: [(1, 149), (223, 307)] gene.......: RUB1 introns....: [(150, 222)] length.....: 307 name.......: YDR139C plength....: 102 start......: 733611 tdist......: 733611 type.......: ORF up.........: 0 } Scer: 2 donors and 4 branches Spar: 1 donors and 4 branches Smik: 1 donors and 2 branches Sbay: 3 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 371), ('Spar', 371), ('Smik', 371), ('Sbay', 371)] ->[('Sbay', 740)] ->[('Sbay', 1207)] ->[('Scer', 21)] ] [ ->[('Scer', 432), ('Spar', 432), ('Smik', 432), ('Sbay', 432)] ->[('Scer', 458), ('Spar', 458), ('Sbay', 458)] ->[('Scer', 196), ('Spar', 195)] ->[('Scer', 509), ('Spar', 509)] ->[('Sbay', 756)] ->[('Smik', 59)] ] 0~120: Scer.....: acttcacctttctcaccctgt-gttaagtttatcaatattatatttcagagtataattatatcaatatttatatgaaatcaaattccgatggcgtcttcgggaaggc----aaacgaaca Spar.....: acttcacctttctcagcctatctttaaatttatcgatactat-tttcagaatataa--atattgatgtttata--aaatcaaattccgatggcgtcttcgggaaagt----aaacgaaca Smik.....: tcttcactttctttggt-----ctccgttcatcgtccattac-acctaaaatata--catactaacactt----gagatt-gattttgatgccgtcttcgggaaagt----aaatacaaa Sbay.....: -tcttacagttttc--ttcagcctccgtcttccgtttgttat-gttcaga--attactacgccaacact-----gaattcaaatgtcgat-gcgtcttcgggagggcggttagattaaca consensus: * ** * * * ** * * ** * * * * * ** *** *********** * * * * * Scer_spli: DDDDDDD Smik_spli: BBBBBBB 120~240: Scer.....: acttt-tagctgaaaaaccaaaat-tct--gttattcaaatgaagtattccgacagaggaataaataaaggaaggtaattaacttccttacagccgtaaccgATGATTGTTAAAGTGAAG Spar.....: acttt-taactgagaaaccaaaat-ttt--gttattcagatacaatatttcggcagaggggtaaataaaaaaaggt-actaatttccttacagccacaaccaATGATTGTTAAAGTAAAG Smik.....: gcttg-taaatgaaaaccaaaaaatactaagttactcatatacagcattcggagagagacgtaggtaaagaaaact-agtaaactccttgta-tcgtaaccaATGATTGTTAAAGTAAAG Sbay.....: gctttccaatcgaaaaaccaagatattt--atcgttcatagcctactctcaagaagaagcgt-accaaagagaactgatcgacatccttgca-tcataaaccATGATTGTTAAAGTGAAG consensus: *** * ** ** * ** * * * *** * * *** * *** * * * * ***** * * ** * ************** *** Scer_spli: BBBBBBB Spar_spli: BBBBBBBB 240~360: Scer.....: ACACTGACTGGGAAGGAGATCTCTGTTGAGCTGAAGGAATCAGATCTCGTATATCACATCAAGGAACTTTTGGAGGAAAAAGAAGGGATTCCACCATCTCAACAAAGACTTATATTCCAG Spar.....: ACGTTGACTGGTAAGGAGATTTCCGTCGAATTGAAGGAATCTGATCTAGTATATCACATCAAGGAACTTTTAGAGGAAAAAGAAGGGATTCCACCTTCTCAACAAAGACTTATATTCCAG Smik.....: ACATTGACCGGAAAAGAGATTTCCGTTGAACTGAGGGAATCAGACCTCGTATATCACATTAAGGAACTTTTGGAGGAAAAGGAAGGGATTCCACCATCTCAGCAAAGACTTATATTTCAA Sbay.....: ACGTTGACCGGCAAAGAGATTTCTGTCGAATTGAAGGAATCAGACCTTGTGTATCACATTAAGGAACTTTTGGAAGAAAAGGAGGGGATTCCACCATCTCAGCAGAGACTTATATTCCAA consensus: ** **** ** ** ***** ** ** ** *** ****** ** ** ** ******** *********** ** ***** ** *********** ***** ** *********** ** 360~480: total....: ====== ======= Scer.....: GGAAAACAAATGTAT------GTTCATTCAGTGGTTAATTATCTTTTAAGTTTATTTACGTTTTTGAGACCTTACTAACGACCAGGATAGTGATGATAAATTAACAGTAACGGATGCACA Spar.....: GGAAAACAGATGTAT------GTAAATTCGATCGTTAATTGTCTTTTAAGTTTATTTACGGTTTTCAGATCTTACTAAcaactaagaaagtgatgataaattaacagtaacagatgcaca Smik.....: GGAAAACAAATGTATGT-AAAATTTACATGAtcgtcaattgtatct--aaattttctac-tttttcagatcttactaacgatcaggacagcgatgacaagttaactgtgacggatgcaca Sbay.....: GGGAAGCAAATGTATGTGAAAGTTTACATAATCGTCAATTATATTTC--TCCTGTTTGT-TTTTCAAAATTATACTAAcaattaagaaagcgatgataaattaactgtaacggatgcgaa consensus: ** ** ** ****** * * * ** **** * * * * * * *** * * ******* * * ** ** ***** ** ***** ** ** ***** * Scer_spli: DDDDDDDDDDDD BBBBBBB BBBBBBB Spar_spli: DDDDDDDDDDDD BBBBBBB BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB BBBBBBB known....: >============================================================================>= 480~600: Scer.....: TCTAGTAGAGGGAATGCAACTCCACTTGGTATTAACACTAAGAGGTGGTAACTAGaaccattttcc-gtcatttatggaattttatcgaaggtgttcatta-gaaaagaagacaaaacga Spar.....: tctagtggaaggaatgcaactccacttagtattaacgctaagaggaggtatctagagccttttttcagtcatttatgtagttttatcaaggctgctgacca-cgaaaaaatacaaaatga Smik.....: tctagtagagggaatgcaa...............................catagagctatttcct-gtcatctatgtgattttttcgaatctatt-atggtaaagcgaacacaaaatga Sbay.....: tctcgtagagggaatgcaacttcatttagtgttgacgctaagaggtgggtgttaagatcttcatctgatgttctgtct--tcttttcaaaagcgagaaccatccaagaaatatgaaatta consensus: *** ** ** *********** ** ** ** ** ** ******** ** ** * * * * * * ** ** * * * ** * *** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB 600~720: Scer.....: acataagttcacttgga-ctttggaaggctaccgcccc-caatttgtcaaaaaaaaaaatacatacaatttagtctatagagtctgttataataaattaattgtttttagacgagaaatg Spar.....: acatactcctatttggatttttggaagactagcgcccc-taacgcatcaa-----caaatacgtacaa-ttactctatagtgtctactataactaattatttgtttttaaactagaaacg Smik.....: acttccttctatttggagttttggtaggttagcgcccctcaatgcatcaa-----gcaatacatataa-ttgttctatagagtatactataataaa-taatctcctctagattaaacatg Sbay.....: ttctgtccttatatcgagtttgagtaagattgaacgtg-caatgagtcaa--------gtatatacaa-ttattctatagagtttattagtaaagattaattatcctaaga-agctagtg consensus: * * * ** ** * * * * ** **** ** ** ** ** ******* ** * ** * * ** * * * * 720~840: Scer.....: tgaactaaaa---ctgtttagtatctatcaaattatccgttatagcatagtacggctatatatggtctgattgctggtctcatatgactttatggtttaaatttcataaagctggccatt Spar.....: tgtattaaaa---ttgttcagtatcttacaagttattcgtagtaatacagtaggg---------------------------taggacaacagcg-----atttcaaaca-----ccatt Smik.....: tatatttgaataactatcaact-cctaccaaatgat-cattgtgatatgttaaaccttt--------------------tgaaatggtttcatagtac-gaaacaatgca----cccgtt Sbay.....: taaattcgaatgttcattaggtatgtatccca-gattattaacagc-tagtagataaata---------------------gagtgagattagcgaac-catttcaa---------cttc consensus: * * * ** * * * * ** * ** * * * * * * * Sbay_spli: DDDDDD BBBBBBB 840~960: Scer.....: gcatggttcgcgctggaaagagaggaaaagcgtggtgataaagagcaaaccaagcatactgttatatgcgattacagactatctgaccaaaagacat-at-ttcgccatttcttctcaat Spar.....: aaatggt--------------------------------------cgaact---tccacaggaacatgcggttacaaattatccaactagaagatgc-atcttcgtcattttttctca-- Smik.....: tcatatat-------------------------------------tgtacta--ttgatgtatttttataatacaagattttcca................................... Sbay.....: gaaaggtt-------------------------------------gagact---tccgctggaatatttaatcccaaattatcaatgaaattgaaacgacatctgttatctcttctcact consensus: * ** * * * * * ** * ** * * * ** * ****** 960~1080: Scer.....: catgtcttccagggcaattttgtaagcacg---attggatgtcctcttgtagtataccgaatttctcattaagaaaagcatcctttgcgctacaactttatcaagtggaagtatatacta Spar.....: catgtcttcaaatgcaattctaaaaaaacg---ttttgatgccctcttgcagtatctcaaattcattagtaagaaaagcactctttggtctacaactttatcaactgg----acatacga Sbay.....: gatat-ttgaatagcagtgttgaaggcatatttattaagtgaagaactgtattctattgtttctatt-ttggcttacgatgctactagaatacgaacatatttcatgctggcaatcatga consensus: ** * ** * *** * * * * ** ** ** * * * * * * * * * *** * *** ** * * * 1080~1200: Scer.....: aactcg-gagcatgc-ttttgccaacgatatcagt-cttagcaaagggacttctaaggacgttat---tgacgcctgattaatctaatcaaatataggtttgtcatttttttaaaccgaa Spar.....: aaccaa-gagtatactttttgccaacggcctcagt-ctcatcaaagaacgtcctaagaacgttattgatgacacttcactaattccataaaatatgggattattgttcaaatcta--aaa Sbay.....: tttcaataaaaatgttcttgatcaactattccgctggatatcccaaatgttatcaagttctgtgc--agaacactttatt--ttacattataatggcttttcaccttcattgccgattaa consensus: * ** ** **** * * * * * * *** * * ** * * * * * ** * * ** ** ** 1200~1320: Scer.....: tggattgacttttgttttcatcataagtattactctctgatag--gatctctgtggtacgctaaaatctatctgaattgtt------tgggacactatgcatgaatttcttatcagttta Spar.....: cggatttgcttttagtatcatagtaaccattgctctctgataaatgatttttatagcacgc-aaaacatatctgaactatttcgtgatgggacgcagtgtacgagtttcttattagttta Sbay.....: ctgtatagtatgcatacctatttaaaagatt-ctttgcgaaatataatacacaagtttctc------ccttctgagtt-ttccactatcgatca-aataaaggagtctc-taccgtatca consensus: * * * ** ** *** ** * ** * ** * * ***** * ** * * * * * ** * ** ** * * Sbay_spli: DDDDDD 1320~1360: Scer.....: aaatttctattaagaggataat------------------ Spar.....: aaattttgactaatagtctgttaagggtatat-------- Sbay.....: ggtttccgaaaggaagaattgtcatctctatttgacgtgg consensus: ** * ** * * { alias......: ['HNT2'] chromosome.: 4 description: member of the histidine triad family end........: 1073479 exons......: [(1, 87), (177, 743)] gene.......: HNT2 introns....: [(88, 176)] length.....: 743 name.......: YDR305C plength....: 247 start......: 1072737 tdist......: 458450 type.......: ORF up.........: 0 } Scer: 3 donors and 1 branches Spar: 3 donors and 1 branches Smik: 4 donors and 2 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 406), ('Spar', 406), ('Smik', 406), ('Sbay', 406)] ->[('Scer', 509), ('Spar', 509), ('Sbay', 509)] ->[('Smik', 716), ('Sbay', 712)] ->[('Sbay', 108)] ->[('Sbay', 737)] ->[('Scer', 90)] ->[('Smik', 474)] ->[('Smik', 1022)] ->[('Spar', 545)] ] [ ->[('Scer', 453), ('Spar', 453), ('Smik', 453), ('Sbay', 453)] ->[('Smik', 160), ('Sbay', 160)] ] 0~120: Scer.....: -----------------------------------------------------------------aatgttcattgtttgttttataagagtcagtgttttcttttagacactattagga Spar.....: ATGAGGTTGCCGATTTGGTGGTCTCTTTGGAAGATCAAGATGGTAGTTTATATCTTAATTATTAGGATGTTCATTTTTTTTTACCGATTTGTCAA---TTACTTTTGGACAGTATTGAGG Smik.....: -----------------------------------------------------------------gatgttcatttttgttgtacgattcgt----gttttcttctggacagtattgagg Sbay.....: -----------------------------------------------------------------gatgtttacttttttttt---------------ttagtttcaggtaagttgaaag consensus: ***** * * ** * ** ** * * * Scer_spli: DDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: agaatta---ttttatccggcctaaaaaaaatattttacatgcaaacttgc-atatattttgccattgacaccaattagaatgtgtaattttcctggtttatacgtttctcaagatatgg Spar.....: TCAATTA--CTTTTAACCAGCCT--AAAGATTTTTTTGCATACAAAATTGTAATGTATTTTGCCATTGACACCAATCAGAATAAAT-ACTTTTCTAGTTTATACGTTT-TCATAATATGG Smik.....: tcaattc---gtttacttgacct---aaaagaattttgcatgctaacttgcagtggaatgtggcttccatgccaattaaaatATGT-ATTTTTTTAGTTTATACTTTTTCAAAAATATGG Sbay.....: ccaatcggggcttttctcaggtt--aaaagatttttcaggtactaatttataatataccttgcgttttatttccatcggaatatgtgtttctttagttttatacgttt-tctagatatg- consensus: *** *** * ** *** * * ** ** * * ** * * * ** *** * * * ******* *** ***** Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 240~360: Scer.....: tcgaatcttcttttctgctcaattgtaagaagcgaagaaaaaaaggaag-ctccat-tgatctatcttgggct-cagaATGATCTTAAGCAAAACA-AAGAAACCTAAAAGCATGAATAA Spar.....: TTGACTTTTCTTTCCTGCTCAATTGCTAGAAGCGAAGAAAAAAAGGAAC-CTCAAT-TGATCTATCTCAACTT-CAGAATGATCTTGAGCGAAATG-AAGAAAAGTAAAAACATGAATAA Smik.....: TTAACTTACTCTTACTGATCAGTAGTTTGAAGCGAAGAAAAAAAAGGACTTTCTATATGACCTATTTTAAGCT-CAGAATGATCTTAAGCAAAACA-AGGAAAAGTATAAGCATGAATAA Sbay.....: -taactc-tttccattgttcacttgttttaggcgaaaaaaattaaggaatggctct-gattctattttactctagaaaatggtagccagaaaaaagttggtaaagcagaaagatgagtaa consensus: * * ** *** * * * ***** **** * * * * * **** * * * **** * ** *** * ** * ** **** *** 360~480: total....: ====== ======= Scer.....: GCCAATATATTTCAGCAAGTTTCTTGTAACTGAACAAGTTTTCTATGTATGCACTCTCATATGTTTTTTTGTACCCCATTCGCACCATTGCGTTACTAACTATATGGAGACCTTATAATC Spar.....: GCCAATATATTTTAGCAAGTTTCTCGTAACTGAACAAGTTTTCTATGTATGCACTCCCATATGT--TTTAGTACCCT-TTCGTATCATTGCGTTACTAACTAAATGAGGACTTTGTACTG Smik.....: GCCAATATATTTCAGCAAGTTTCTAGTGACTGAGCAAGTTTTTTACGTATGCACGCTTGTGTGT--TTTAGTACCCT-TTCGGATCATTGCGTTACTAACTATAAGAAGACTTTGTA-CG Sbay.....: gccaatatacttcagcaaatttttagtcactgaacaagtcttctacgtatgcatgctcgtgtat--ttaagtaccat-ttcttaccattgagatactaaccgtccaggaattccatacca consensus: ********* ** ***** *** * ** ***** ***** ** ** ******* * * * * ** ***** *** * ***** * ******* * ** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB DDDDDD Sbay_spli: DDDDDD BBBBBBB known....: >========================================================================= 480~600: Scer.....: TCTGCTTCTTTACAGAAGTCAAAATATACGTATGCATTGGTAAACTTGAAACCAATTGTACCCGGACATGTACTGATCGTTCCACTGAGAACTACGGTTTTAAACTTATCAGATCTGACC Spar.....: TCTGCTTTCCTACAGAAGTCAAAATACACGTATGCACTAGTGAACCTGAAACCAATTGTACCTGGGCATGTACTGATCGTTCCATTGAGAACTACAGTTGTAAACTTATCAGATCTGACC Smik.....: TCCGTTTGTAAacagaaatcaaaatacacctatgcattggtgaacttaaaaccaattgtaccgggtcatatattgattgttccattgagaaccacggtgttaaccttatcggatctgact Sbay.....: ctcacctctatctagaaatcaaaacatacgtatgcattggtaaatttaaaaccgattgtgccgggccacatactgattgttcccttgagaactacagttgtgaacctatcagacctgacc consensus: * **** ****** * ** ****** * ** ** * ***** ***** ** ** ** ** **** ***** ******* ** ** * * * **** ** ***** Scer_spli: DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: D Sbay_spli: DDDDDD known....: =============>= 600~720: Scer.....: ATGCCTGAATCTCAAGATTATTTCAAGACTTTACAGTTAATACATAGATTTATTAAGTGGCAATATAAGGCTGACTCTATCAACGTTGCCATCCAAGATGGACCTGAGGCCGGACAGTCG Spar.....: ATGCCTGAATCCCAAGATTATTTCAAGACCCTGCAGTTAATTCATAGATTTATTAAATGGCAATATAAGGCAGACTCGATCAATGTTGCCATACAAGATGGACCTGAAGCGGGCCAATCA Smik.....: gtgcctgaatcccaagattatttcaacaccctgcaattaatccataggtttattaaatggcaatataaggcggattcgattaatgttgccatccaagacgggcctgaagctggccagtca Sbay.....: ATGACTGAATCTCAAGATTATTTCAAGACCCTGCAATTAATCCATCGATTTATCAAGTGGCAATATAAGGCAGACTCAGTCAACGTTGCCATCCAGGATGGGCCCGAAGCTGGTCAGTCC consensus: ** ******* ************** ** * ** ***** *** * ***** ** ************** ** ** * ** ******** ** ** ** ** ** ** ** ** ** Smik_spli: DDDD Sbay_spli: DDDDDD 720~840: Scer.....: GTACCCCACTTGCATACACACATTATTCCACGTTATAAAATAAACAATGTAGGGGATTTAATATACGATAAATTAGATCATTGGGATGGTAATGGGACTTTGACTGATTGGCAAGGAAGA Spar.....: GTACCCCACTTGCACACACACATTATACCACGTTACAAAATAAATAATGTTGGAGATTTGATATACGATAAATTAGACCATTGGGATGGTAATGGCACTTTGGCTGATTGGCAAGCAAGA Smik.....: gttcctcacttgcacacacacattataccacgttataagataaataatgtgggagatttgatatacgataaactagaccattgggatggcaatggtactttggtcgattggcaagcaaga Sbay.....: GTCCCCCATCTACACACGCATGTCATACCACGGTATAAAATGAACAACGTTGGTGACTTGATATACGATAAGCTAGATCGTTGGGATGGCAATGGTGCTTTGGCCAATTGGCAGGCAAGA consensus: ** ** ** * ** ** ** * ** ***** ** ** ** ** ** ** ** ** ** *********** **** * ********* ***** ***** ******* * **** Smik_spli: DD Sbay_spli: DDDDDD 840~960: Scer.....: AGAGACGAATATTTGGGTGTTGGTGGTAGGCAAGCAAGAAAAAATAACTCTACATCGGCCACTGTAGACGGGGATGAACTCTCACAAGGTCCTAATGTCTTGAAGCCAGACAGTCAAAGG Spar.....: CGAGACGAATATTTAGGAGTTGGTGGTAGGCAAGCAAGAAAAAACAAGTCTACACTGGCCACTGCGGATGGGGATGAACCCTTGAAAGGCCCTAATGTCTTGAAGCCAGACAGTCAGAGG Smik.....: cgggatgattatttaggagtcggtggtagacaggcaagaaagaacaagtctgcactggccactgcggacggggacgaaccttttcaaggccctaatgtcttgaagccagacagccaaagg Sbay.....: AGAGACGAATATTTGGGAGTCGGCGGGAGACAAGCAAGGAAGGACAAGGCCGCACACGCCAATTGCGATGAGACTGAATCTCCGCAGGGCCCCAAGGCGTTGAAGCCAGACAGCCAACGG consensus: * ** ** ***** ** ** ** ** ** ** ***** ** * ** * ** **** * ** * * *** * ** ** ** * ************** ** ** 960~1080: Scer.....: AAGGTTCGAGCTTTAACCGAAATGAAAAAAGAAGCTGAGGATCTTCAAGCCAGACTAGAAGAATTTGTATCTTCTGATCCTGGTTTAACACAATGGTTATAG--------ttcaataaat Spar.....: AAGGTCAGAACTTTGGGCGAAATGAAAAAAGAGGTTGAGGATCTTCAAAGCGGACTAGAACAGTTTGTATCTTCTAATACTGATTTGACACAATGGCTATAG--------ttcaatagat Smik.....: aaggtgaggtctctaatcgaaatgaaaaaagaggttcaagatcttcaaagcagactagaagagttcgtagcttcaagtcctgatttaaaacagtggctatag--------cacaatagtt Sbay.....: GAGGAGAGATCACTTGATGAAATGAAAAAAGAAGTGCAGGGCCTTCAAACCGCCCTGGAAGGGTTCTTGGCTGCGCGTCCTGATCTCAGACAATGGCAATAGatcccaacgtcaatagag consensus: *** * * * ************** * * * ****** * ** *** ** * ** * * *** * * * *** *** **** ***** Smik_spli: DDDDDD 1080~1200: Scer.....: aa--------tagattcatacttacgatat-aaaaaatagtagggaagttaatt----------ttcgtttcgcagcgaatccc--ttttagcagaggaa-----aaaaaagatgaaacc Spar.....: aatatag--ttaaatacgtacttacaatatcgaaaaatagtaaggatgttaatt----------ttcgtttcgcagcgaatccc-tttttagcagaggaa-----aaaaaagatgaagcc Smik.....: aatatag--ttaaatacaaacttacaatac-acaatatattaattttgttgttt----------ttctcttcgcagcgaatccctttttttgcaaaggaa-----aaaaa--atgaagcc Sbay.....: aatgtagttttaagtgaataaatacagtttgatagcaaagtaataaaattgattctatgccagatttgtttcgcggcgtagcca-tttttggcagggaaaaaatgaaaaaagatgaagct consensus: ** ** * * *** * * * * ** ** ** ** ***** *** * ** **** *** * ** ***** ***** * 1200~1285: Scer.....: atcc-ttactactttcctcgaggagactcaacagtaaaggttactttcaattcaataaacaaaaggcacagcgatatccgcaatt Spar.....: attc-ttactacttttctcgaagagcctcaacagttgaggttaccttcaatttaataaacaaaaggcacagcgatatctacaaca Smik.....: attcttttctaccaccctcgaagagtctcaacaattgatgtaatgttcagttcaaaaaacaagagggacaggaagatctgcaaca Sbay.....: attc-ctacaaattctctcgaaggggctcaacaatagaag--gtgtcctacttagacagaacaaaatagaacgagatccgcaaca consensus: ** * * * * ***** * * ******* * * * * * * * * * * * * * *** *** { alias......: [] chromosome.: 4 description: Protein required for cell viability end........: 1213603 exons......: [(1, 30), (132, 767)] gene.......: introns....: [(31, 131)] length.....: 767 name.......: YDR367W plength....: 255 start......: 1212837 tdist......: 318326 type.......: ORF up.........: 1 } Scer: 9 donors and 8 branches Spar: 3 donors and 3 branches Smik: 3 donors and 1 branches Sbay: 3 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 6524), ('Spar', 6524), ('Smik', 6524), ('Sbay', 6525)] ->[('Sbay', 5980)] ->[('Sbay', 6786)] ->[('Scer', 317)] ->[('Scer', 1237)] ->[('Scer', 3488)] ->[('Scer', 3669)] ->[('Scer', 4669)] ->[('Scer', 4835)] ->[('Scer', 5579)] ->[('Scer', 5901)] ->[('Smik', 6243)] ->[('Smik', 7027)] ->[('Spar', 5939)] ->[('Spar', 6144)] ] [ ->[('Scer', 6600), ('Spar', 6600), ('Smik', 6600), ('Sbay', 6604)] ->[('Scer', 5860), ('Scer', 5856)] ->[('Sbay', 6479)] ->[('Scer', 346)] ->[('Scer', 2098)] ->[('Scer', 2836)] ->[('Scer', 3262)] ->[('Scer', 5930)] ->[('Spar', 6157)] ->[('Spar', 6990)] ] 0~120: Scer.....: cttcaatttttcttgcaaccttatacgatccgctgaaatgtcttgaaaaatattccggacccacagttatgtgatatttattatttgtaccattatgctaatgatgaatttgagatgaga 120~240: Scer.....: tgagatgaaattttttctgtaactgaaaaatttcggaacgtcaataatgatcggtagcctcatctgggatatttggcccggctcatattgctaatctttggatatagggctattagcaga 240~360: Scer.....: tttcaatcgtcctctcttggcatagtagacacagagttgtatttgcgcttctgagcgatgcttccgagattgttgaagcatgttggaatagaaatcaactatcatctactaactagtatt Scer_spli: DDDDDD BBBBBBB 360~480: Scer.....: tacattactagtatattatcatatacggtgttagaagatgacgcaaatgatgagaaatagtcatctaaattagtggaagctgaaacgcaaggattgataatgtaataggatcaatgaata 480~600: Scer.....: taaacatataaaatgatgataataatatttatagaattgtgtagaattgcagattcccttttatggattcctaaatccttgaggagaacttctagtatattctgtatacctaatattata 600~720: Scer.....: gcctttatcaacaatggaatcccaacaattatctcaacattcacccatttctcatggtagcgcctgtgcttcggttacttctaaggaagtccacacaaatcaagatccgttagacgtttc 720~840: Scer.....: agcttccaaaacagaagaatgtgagaaggcttccactaaggctaactctcaacagacaacaacacctgcttcatcagctgttccagagaacccccatcatgcctctcctcaacctgcttc 840~960: Scer.....: agtaccacctccacagaatgggccgtacccacagcagtgcatgatgacccaaaaccaagccaatccatctggttggtcattttacggacacccatctatgattccgtatacaccttatca 960~1080: Scer.....: aatgtcgcctatgtactttccacctgggccacaatcacagtttccgcagtatccatcatcagttggaacgcctctgagcactccatcacctgagtcaggtaatacatttactgattcatc 1080~1200: Scer.....: ctcagcggactctgatatgacatccactaaaaaatatgtcagaccaccaccaatgttaacctcacctaatgactttccaaattgggttaaaacatacatcaaatttttacaaaactcgaa 1200~1320: Scer.....: tctcggtggtattattccgacagtaaacggaaaacccgtacgtcagatcactgatgatgaactcaccttcttgtataacacttttcaaatatttgctccctctcaattcctacctacctg Scer_spli: DDDDDD 1320~1440: Scer.....: ggtcaaagacatcctatccgttgattatacggatatcatgaaaattctttccaaaagtattgaaaaaatgcaatctgatacccaagaggcaaacgacattgtgaccctggcaaatttgca 1440~1560: Scer.....: atataatggcagtacacctgcagatgcatttgaaacaaaagtcacaaacattatcgacagactgaacaataatggcattcatatcaataacaaggtcgcatgccaattaattatgagagg 1560~1680: Scer.....: tctatctggcgaatataaatttttacgctacacacgtcatcgacatctaaatatgacagtcgctgaactgttcttagatatccatgctatttatgaagaacaacagggatcgagaaacag 1680~1800: Scer.....: caaacctaattacaggagaaatctgagtgatgagaagaatgattctcgcagctatacgaatacaaccaaacccaaagttatagctcggaatcctcaaaaaacaaataattcgaaatcgaa 1800~1920: Scer.....: aacagccagggctcacaatgtatccacatctaataactctcccagcacggacaacgattccatcagtaaatcaactactgaaccgattcaattgaacaataagcacgaccttcaccttag 1920~2040: Scer.....: gccaggaacttactgaatctacggtaaatcacactaatcattctgatgatgaactccctggacacctccttctcgattcaggagcatcacgaacccttataagatctgctcatcacatac 2040~2160: Scer.....: actcagcatcatctaatcctgacataaacgtagttgatgctcaaaaaagaaatataccaattaacgctattggtgacctacaatttcacttccaggacaacaccaaaacatcaataaagg Scer_spli: BBBBBBB 2160~2280: Scer.....: tattgcacactcctaacatagcctatgacttactcagtttgaatgaattggctgcagtagatatcacagcatgctttaccaaaaacgtcttagaacgatctgacggcactgtacttgcac 2280~2400: Scer.....: ctatcgtacaatatggagacttttactgggtatctaaaaggtacttgcttccatcaaatatctccgtacccaccatcaataatgtccatacaagtgaaagtacacgcaaatatccttatc 2400~2520: Scer.....: ctttcattcatcgaatgcttgcgcatgccaatgcacagacaattcgatactcacttaaaaataacaccatcacgtattttaacgaatcagatgtcgactggtctagtgctattgactatc 2520~2640: Scer.....: aatgtcctgattgtttaatcggcaaaagcaccaaacacagacatatcaaaggttcacgactaaaataccaaaattcatacgaaccctttcaatacctacatactgacatatttggtccag 2640~2760: Scer.....: ttcacaacctaccaaatagtgcaccatcctatttcatctcatttactgatgagacaacaaaattccgttgggtttatccattacacgaccgtcgcgaggactctatcctcgatgttttta 2760~2880: Scer.....: ctacgatactagcttttattaagaaccagtttcaggccagtgtcttggttatacaaatggaccgtggttctgagtatactaacagaactctccataaattccttgaaaaaaatggtataa Scer_spli: BBBBBBB 2880~3000: Scer.....: ctccatgctatacaaccacagcggattcccgagcacatggagtcgctgaacggctaaaccgtaccttattagatgactgccgtactcaactgcaatgtagtggtttaccgaactatttat 3000~3120: Scer.....: ggttctctgcaatcgaattttctactattgtgagaaattcactagcttcacctaaaagcaaaaaatctgcaagacaacatgctggcttggcaggacttgatatcagtactttgttacctt 3120~3240: Scer.....: tcggtcaacctgttatcgtcaatgatcacaaccctaactccaaaatacatcctcgtggcatcccaggctacgctctacatccgtctcgaaactcttatggatatatcatctatcttccat 3240~3360: Scer.....: ccttaaagaagacagtagatacaactaactatgttattcttcagggcaaggaatccagattagatcaattcaattacgacgcactcactttcgatgaagacttaaaccgtttaactgctt Scer_spli: BBBBBBB 3360~3480: Scer.....: catatcattcgttcattgcgtcaaatgagatccaagaatccaatgatcttaacatagaatctgaccatgacttccaatccgacattgaactacatcctgagcaaccgagaaatgtccttt 3480~3600: Scer.....: caaaagctgtgagtccaaccgattccacacctccgtcaactcatactgaagattcgaaacgtgtttctaaaaccaatattcgcgcacccagagaagttgaccccaacatatctgaatcta Scer_spli: DDDDDD 3600~3720: Scer.....: atattcttccatcaaagaagagatctagcaccccccaaatttccaatatcgagagtaccggttcgggtggtatgcataaattaaatgttcctttacttgctcccatgtcccaatctaaca Scer_spli: DDDDDD 3720~3840: Scer.....: cacatgagtcgtcgcacgccagtaaatctaaagatttcagacactcagactcgtacagtgaaaatgagactaatcatacaaacgtaccaatatccagtacgggtggtaccaacaacaaaa 3840~3960: Scer.....: ctgttccgcagataagtgaccaagagactgagaaaaggattatacaccgttcaccttcaatcgatgcttctccaccggaaaataattcatcgcacaatattgttcctatcaaaacgccaa 3960~4080: Scer.....: ctactgtttctgaacagaataccgaggaatctatcatcgctgatctcccactccctgatctacctccagaatctcctaccgaattccctgacccatttaaagaactcccaccgataaatt 4080~4200: Scer.....: ctcgtcaaactaattccagtttgggtggtattggtgactctaatgcctatactactatcaacagtaagaaaagatcattagaagataatgaaactgaaattaaggtatcacgagacacat 4200~4320: Scer.....: ggaatactaagaatatgcgtagtttagaacctccgagatcgaagaaacgaattcacctgattgcagctgtaaaagcagtaaaatcaatcaaaccaatacggacaaccttacgatacgatg 4320~4440: Scer.....: aggcaatcacctataataaagatattaaagaaaaagaaaaatatatcgaggcataccacaaagaagtcaatcaactgttgaagatgaaaacttgggacactgacgaatattatgacagaa 4440~4560: Scer.....: aagaaatagaccctaaaagagtaataaactcaatgtttatcttcaacaagaaacgtgacggtactcataaagctagatttgttgcaagaggtgatattcagcatcctgacacttacgact 4560~4680: Scer.....: caggcatgcaatccaataccgtacatcactatgcattaatgacatccctgtcacttgcattagacaataactactatattacacaattagacatatcttcggcatatttgtatgcagaca Scer_spli: DDDDDD 4680~4800: Scer.....: tcaaagaagaattatacataagacctccaccacatttaggaatgaatgataagttgatacgtttgaagaaatcactttatggattgaaacaaagtggagcgaactggtacgaaactatca 4800~4920: Scer.....: aatcatacctgatacaacaatgtggtatggaagaagttcgtggatggtcatgcgtatttaaaaacagtcaagtgacaatttgtttattcgtagatgatatggtattgtttagcaaaaatc Scer_spli: DDDDDD 4920~5040: Scer.....: taaattcaaacaaaagaattatagagaagcttaagatgcaatacgacaccaagattataaatctaggcgaaagtgatgaggaaattcaatatgacatacttggcttagaaatcaaatatc 5040~5160: Scer.....: aaagaggtaaatacatgaaattaggtatggaaaactcattaactgagaaaatacccaaattaaacgtacctttgaatccaaaaggaagaaaacttagcgctccaggtcaaccaggtcttt 5160~5280: Scer.....: atatagaccaggatgaactagaaatagatgaagatgaatacaaagagaaggtacatgaaatgcaaaagttgattggtctagcttcatatgttggatataaatttagatttgacttactat 5280~5400: Scer.....: actacatcaacacacttgctcaacatatactattcccctctaggcaagttttagacatgacatatgagttaatacaattcatgtgggacactagagataaacaattaatatggcacaaaa 5400~5520: Scer.....: acaaacctaccaagccagataataaactagtcgcaataagcgatgcttcatatggtaaccaaccatattacaagtcacaaattggtaacattttcctactcaacggaaaagtgattggag 5520~5640: Scer.....: gaaagtcgacaaaggcttcgttaacatgcacttcaactacagaagcagaaatacacgcagtcagtgaagctataccgctattgaataacctcagtcaccttgtgcaagaacttaacaaga Scer_spli: DDDDDD 5640~5760: Scer.....: aaccaattattaaaggcttacttactgatagtagatcaacgatcagtataattaagtctacaaatgaagagaaatttagaaacagattttttggcacaaaggcaatgagacttagagatg 5760~5880: Scer.....: aagtatcaggtaataatttatacgtatactacatcgagaccaagaagaacattgctgatgtgatgacaaaacctcttccgataaaaacatttaaactattaactaacaaatggattcatt Scer_spli: BBBBBBBBBBB 5880~6000: Scer.....: agatctattacattatgggtggtatgttggaatagaaatcaactatcatctactaactagtatttacattactagtatattatcatatac-ggtgttagaagatgacgcaaatgatgaga Spar.....: ------------------------------------cttcaactattcttgcaaaacttgtatgatccaccgaaatgtctt-tgaaataccgattatccacagttacttgatatttgtta Smik.....: --------------cttcaaatttttttctgctgagatttaaattatccactaaaacct--ctttgaaatattgagtattcactgtgaggtaagga--aagtatttgtatctttatgcta Sbay.....: ------------------------------ggtgaaatttccttgctctacctta-cca--acttgaaatactaagcaaccttgatcgaattacgataaagtaagtttttattgacgcta consensus: * * * * * * * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD Sbay_spli: DDDDDD 6000~6120: Scer.....: aatagtcatctaaattagtg--gaagctgaaacgcaaggattgataatgtaataggatcaatgaatataaacatataaaatgatgataataatatttatagaattgtgtagaattgcaga Spar.....: tttgtaccattatgccaatgatgagcttgcgatgagatgagatgaaatttttt----tctgtgactgaaaaatttcggaacgtcaataatga--cctgtaacctcatttagaatggttgg Smik.....: gtaatcaagt----tgagat---gagatgagatgagatgagatgaaat----tttt-tctgaggttgaaaaattttggaacgttaataatga--tcagttacatcatcgaagttggttgg Sbay.....: ataataaaatgaagtgagat---gagttgagatgagatgagatgagatgaaatttt-tttgtgattgaaaaatttcggaacgtcaataatga--ccgtcaaactcaccaaatgtggttag consensus: * ** * * * ** ** * * * * *** * ** * ***** * * * * * 6120~6240: Scer.....: ttcc-cttttatggattcctaaatccttgaggagaacttctagtatatt-ctgtatacctaatattatagcctttatcaacaatggaatcccaacaattatctcaacattcacatatttc Spar.....: cccgacttattctacctaatatatgtatgtacaaatccactaacac-tt-tttcattcgccctatcttag--------gacagtgga--cacagttctgtccgcgcttttgagcaatgtc Smik.....: cccggtccgtat-tccttgactttatatgtacaaacccgctagtactct--tgcattttcccgatcttgg--------gatggtgga--cgcagctcaacttgtgtctctgagat-tgtg Sbay.....: ---agcccatatatctctgacattccttgtgccaaatcgttaataccctactgattttgcatcaccttaa--------ggcagtaaa--tataaccctccgtgtggccctggcac-tgtt consensus: * * ** * ** * * * * * * * * * * * * Spar_spli: DDDDDD BBBBBBB 6240~6360: Scer.....: tcaaagcatatatgta-gtatatatacatatacatatatatatttatataggtttgggaacctatgtttttt-----------------attgtaccaaacgcatccctcttcaataatc Spar.....: tctgagattgt-taaa-atatacatgtacatattt-tatatgtatat-tcattctgagaacctatgttttt-------------------ccctaccaaacgcatcc-tctttaata-tc Smik.....: aaagtatgcatatatatacatacatatatatatatatgtatatggatatgcacttatatacatatatatactcttccgaccatgttcttgctttagcacacgctttcctctttgatactc Sbay.....: ggaaagtacgcatatacacttacgtgaatacttttgagggttattttcttttttgtcatacgtatatata-----------------------------------tattctctgatactc consensus: * * ** * * * * * * * ** *** * * *** *** ** Smik_spli: DDDDDD 6360~6480: Scer.....: ttcgaaaaaaaagtgcacaacaagcggg-----aaaatctgtgtaaagctgtataagtgatctgtacaaaaactacgaagaaaagaaataataccag-ggaggaactaccaattgtaacc Spar.....: ttcgaaaaaaa-gtgcacaacgagcggg-----aaaatctgtgtaaaactgcataagcgatccgtacaaaacctgcgaagaaaagagctaataccggtggaggacttaccaattgcaacc Smik.....: ttagaaaaaaa-gtgcacaacgagcggg-----aaaacctgtaca-aa-agtttacgtgaattatataacaaaaaatacgagaagaagtgataccagtgaaaaactcatcaattacaatt Sbay.....: taaaaaaaaat-atatatagcgagcgggctctttaattctctgtataa-tgtataaataaacacaacaataatagctgagtaaa-aagtgatatcagccgagatat-attcgttgcaact consensus: * ****** * * * * ****** ** ** * * * * ** * * ** * * ** * * *** * * * * ** ** Sbay_spli: B 6480~6600: total....: ====== Scer.....: -attaaccttagttATGAGATCATCTCTTCTAACCCTTCCAAAAG-TATGTTT-CCGGCAAACGCTATAAATTTTTG--TTAACTTGTAAGGATTCGAAG-------CAAAGCACAATTT Spar.....: tatcaacttcagttatgagatcatctcttttaacccttccaaaag-tatgttt-aaggcaaacaatataagttttt---ttaa-tcataaggattcgaggg------caaagcacaattt Smik.....: -accaacatcagtcatgagatctttccttttgacccttccaaaag-tatgttg-aagacaaacaacaagtgttttttttctttcttacacaaattcaatgg------taaagcatagttt Sbay.....: -attaacttcagccatgagatcgtccctcgtagctcttccaaaaggtatgttgcagggcaggcggcataagcttgtctttttgatgataaggattcaacaacgcagttaaagcgaggcat consensus: * *** * ** ******** * ** * * ********** ****** * ** * * ** * * * * **** * ***** * Scer_spli: DDDDDDD Spar_spli: DDDDDDD Smik_spli: DDDDDDD Sbay_spli: BBBBBBB DDDDDD known....: >=========================================================================== 6600~6720: total....: ======= Scer.....: T----ACTAACCTGTTCTCAAACATATTTTTTTTTCATAGTCTTTTTTGGGGTTTATGCCGCTATACCTTGCAGTTGAGATTGTCTTAGGTATTTCCATTCTAAACAAATGCAGTGGTGC Spar.....: t----actaacttat-ctcaaaaatattctca----atagtcctttttggggtttATGCCACTATACCTTGCAGTTGAGATTGTCTTAGGTATTTCCATTCTAAACAAATGTAGTGGTGC Smik.....: t----actaactcatcctcaaaaatgatttta----acagtctttcttagggtttATGCCATTATACCTTGCAGTCGAGATTGTTTTGGGTATTTCTATTCTGAACAAATGTAGTGGTGT Sbay.....: ttcatactaacgtattctttaaactaattcaac---gcagtcatttttagggtttATGCCACTGTATCTAGCGGTCGAAATCGTTTTAGGTATCTCCATTCTGAATAAATGTAGTGGTGC consensus: * ****** * ** ** * * **** ** ** *********** * ** ** ** ** ** ** ** ** ***** ** ***** ** ***** ******* Scer_spli: BBBBBBBBBBB Spar_spli: BBBBBBBBBBB Smik_spli: BBBBBBBBBBB Sbay_spli: BBBBBBB known....: ======================================>= 6720~6840: Scer.....: TTATGGTATTTTAGCATTGTTCACGGGTCATCCGTTGGATTTTATGCAATGGATAGCATATCTTTGGTCGGTATTTACATTAATCGTATTCTCACAAGGGCTGTATTTGATTCATAAGCC Spar.....: TTATGGTATCTTAGCATTGTTTACGGGCCATCCGTTGGATTTTATGCAATGGATAGCATATCTTTGGTCGGTGTTTACATTAATTGTATTTTCACAAGGACTGTATTTGATTCATAAGCC Smik.....: TTATGGTATCTTAGCGTTGTTTACAGGCCATCCATTAGATTTCATGCAATGGGTAGCATATCTTTGGTCGGTATTTACATTAATTATATTTTCACAAGGGCTATATTTGATTCATAAGCC Sbay.....: TTATGGTATCTTAGCATTGTTTACAGGCCATCCATTAGATTTTATGCAATGGGTCGCATACCTTTGGTCAGTGTTTACACTGATTGTATTTGCACAGGGACTATATTTGATTCATAAGCC consensus: ********* ***** ***** ** ** ***** ** ***** ********* * ***** ******** ** ****** * ** **** **** ** ** ***************** Sbay_spli: DDDDDD 6840~6960: Scer.....: AAACTTGCTGGTATTTTCGCAAATCTGCGTACTTTATACAATCGATACCATTTCCACTTGTTTTTTTACTCTATGGTTTACCACGCAATGGTTCACCTTGGAAGACACTGCTAATAT--- Spar.....: AAACTTGCTAGTATTCTCTCAAATCTGCGTACTTTATACAATCGACACCATTTCTACTTGTTTTTTTACACTTTGGTTTACCACCCAATGGTTCACCTTGGAAGACACTGGTAATGG--- Smik.....: AAACTTATTGCTTTTCTCTCAAATCTGCGCACTATACACTCTCGATACCCTGTTTACTTGTTTTTTTACTTTATGGTTTACCACGCAATGGTTTACTTTGGAAGATAC------------ Sbay.....: AAATTTGCTAGTTTTCTCTCAAATATGCGTCCTCTATACCGTTGATACTATTTGTACTTGCTTTTTTACCCTATGGTTCACCACACAGTGGTTCACTTTGGAAGGTAATGCTTCTATTGT consensus: *** ** * * ** ** ***** **** ** ** ** * ** ** * * ***** ******** * ***** ***** ** ***** ** ******* * 6960~7080: Scer.....: ------TGATGGAAATAATGCACTACAA---------AGTAACCCAATATCGACAGGTAAGCTGACAGAACGTGGTATTGATATAAGTAAACAAAGTGCAACTGAAAGCTACGAATATAC Spar.....: ------CGATGGAAATACTACATTACAAGGTATTAACAGTAACTCAATATCGACAGGTAAGCTGACAGCGCGGGGTACTGATATAAGTAAACAGAGTGCAACCGAAAGCTACGAATATTC Smik.....: ------TGCTGGTGGCGTTGCATTACAAAGTAATAACAGTAATCTGATATCAACCGAGAGGCTTACAGTACGTAATACTGATATAAGTAAACAAAGTGCTACTGAGAGCTACGAATACTC Sbay.....: TGCTGATGCTAGCAGTACTGCAACACAAACCATTAATTATAACCCAATAGCAACCGGTAAGCTAACAGCTCGTAGTACTGATACAAGTGGACAAGGCGCTTCTGAAAGCTACGAATATTC consensus: * * * * ** **** *** *** * ** * * *** **** ** ** ***** **** *** * ** * ** *********** * Spar_spli: BBBBBBB Smik_spli: DDDDDD 7080~7200: Scer.....: CATGACTATTTTAATTACGTTGGTGTCATTGATATTCAGGTTCTACTTTAACTTCATTTTGGCATCTTTTGTTCAAGAATTGTTACACCACCCCAAATATTTAGTTGATAGGGATGACGT Spar.....: CATGACTATTTTAATTACGTTGGTATCATTGATATTCAGGTTCTACTTTAACTTTATTTTAGCATCTTTTGTTCAAGAATTGCTACACCACCCCAAATATTTAGTTGATAGAGATGATGT Smik.....: CATAACTATTCTAATTACATTGGTATCATTGATATTCAGGTTCTATTTCAACCTTATTTTGGCATCCTTTGTTCAGGAATTGCTACACCATCCCAAGTATTTAGTTGATAGAGATGATGT Sbay.....: GATCACGATATTAATTACGTTGGTATCGTTGATATTCAGATTCTACTTTAATTTTATTTTGGCATCATTTGTCCAAGAGTTGCTGCACCACCCTAAATATCTAGTCGATAGAGATGATGT consensus: ** ** ** ******* ***** ** *********** ***** ** ** * ***** ***** ***** ** ** *** * ***** ** ** *** **** ***** ***** ** 7200~7320: Scer.....: AGAACAAAACTTGAAAAACAAGCCTATTTGGAAAAGACTGTGGGCTAAGAGCCAAAAAGGTTGTTATAAGCTATGTAAGAATTTGTTAGAGTAAatagtaaaataaagc-----cctagc Spar.....: TGAACAAGACTTGAAAAACAAACCTGTTTGGAAAAGGCTTTGGGCCAAAAGCCAAAAAGCCTGTTATAAGCTATGTAAGAATTTATTAGAGTAAataggaaagtaaagc-----ctcagt Smik.....: AGAACAAAACTTGAAAAACAAGCCTATTTGGAAAAGGCTCTACGCCAAGAGCCAAAAAGGTTGTTACAAGCTATGTAAAAATTTACTAAATTAAatagaagaattcaac-----ttcagc Sbay.....: AGAACAGGACTTGAAGAATAAGCCTATTTGGAAAAGGCTTTGGGCCAAGAGTCAAAAAGGCTGTTACAAACTATGTAAGAACTTACTAGAGTAGatatattagcataacagattctcggc consensus: ***** ******* ** ** *** ********** ** * ** ** ** ******* ***** ** ******** ** ** ** * ** *** * * * * 7320~7440: Scer.....: gttatagcgttttacactgatgaagaaatgt-ttctattctgacatcataaaatcattctcactgat----------------gctattgt-cac-ttttcatcacgtgtgtatttaag- Spar.....: agtatagcttttcacattgacgaagaagtgtattccatgctcacatcataaaatcatacaccttgat----------------gctattgttcac-ttttcatcacgtgtaaatttaagg Smik.....: attatagc--cttcgattgttgaagaaacgcattttatatcgatgatcta-ttttatttaactttat----------------cctattgtccac------atcacgtgccaacttaaag Sbay.....: attacagct-cgtataacaatcattgaacatatcttatga-gatactct--tttcatttagtttggtgatgctttcaatgcttgctattgttccaattttaatcacgtgccattttaagg consensus: ** *** * * * * ** * * * ** * * ******* * ******** **** 7440~7560: Scer.....: tagct--cttacgtaattttgaaaaaaaa--ggaaaaaggaaactatat---agcacgcaattccctatt-tggttgcaattcaattccgtgaaaccc-ttttcttttctaaagt-gata Spar.....: ttact--cttacgtaatttggaaaaaaaataggaaaaaggacactatat---cgtacgcagttccctattctggttgcaatccaattttttaacatttattttctcttctaaggt-ggta Smik.....: ttact--cttacgtaataataaaagaaaaaaccaggaaaaaaacaata----aataggcaattccctattttggttgcaatcaattgctttgatattattcttcttccctaagtcagata Sbay.....: tttcctctttacgtaatttggaaaaaaattaggaaaaaggaaaccataaaagaatagaaaagacaacaattc---tagacacagtcgccctgtcttggctctgcttactg----taggta consensus: * * ********* *** *** * ** * ** *** * * * * * * * * * * ** * ** 7560~7624: Scer.....: ataaagtaa------ctttgcaatataatcaggtcgcaaatatacccacagataataatctacc Spar.....: ataaagtaaaagtaactcgtcgatataatcagatcacacgaatatccacacataata-cccatt Smik.....: taaagtcac------ttcactgatacaatctggtaccgtcaatatccacacattgtaaatcatt Sbay.....: gtaaaacat------ctcattgatttcat----tgctcaaagtacgcttatatagtaattgacc consensus: ** * * ** ** * ** * * ** ** * { alias......: [] chromosome.: 4 description: Hypothetical ORF identified by homology. See FEBS Letters [2000]487:31-36. end........: 1238839 exons......: [(1, 27), (219, 539)] gene.......: introns....: [(28, 218)] length.....: 539 name.......: YDR381C-A plength....: 179 start......: 1238301 tdist......: 293090 type.......: ORF up.........: 0 } Scer: 2 donors and 1 branches Spar: 0 donors and 0 branches Smik: 4 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 702), ('Smik', 702)] ->[('Scer', 134)] ->[('Smik', 247)] ->[('Smik', 1293)] ->[('Smik', 1370)] ] [ ->[('Scer', 745)] ->[('Smik', 1476)] ] 0~120: Scer.....: ttctgttgttgattaatagatattactttctatatttgaaataatcagtttaagcggtaataaattcgcggactattccttaacgatctg-taactggaagttaaatcaaagatacgtaa Smik.....: ttctgttgttgattaatagatattactttctatatttgaaataatcagtttaagcggtaataaattcgcggactattccttaatgatctgctagatagaagatggattaaacaaaatctg consensus: *********************************************************************************** ****** ** * **** * ** *** * * 120~240: Scer.....: agtaatagtttagagt-aagtccaaatatcatctcttaaatgaaaaatttcagataccgagaaaatttg----gaaaaagaaaattattacaatttttctgcttggtaactttacacgat Smik.....: agtaatagttaaaggtgaaggctaagtaccatctcttaaatgaaaagtttcagatacgaagaaaatttgaagagaaaaagaaaaatattacaatttttctgcttggtaatgtcacacga- consensus: ********** * ** *** * ** ** ***************** ********** ********** *********** ************************ * ****** Scer_spli: DDDDDDD 240~360: Scer.....: ccatactgtaattttcgcattacctgcgtaatgactagaatgggcacgtgatcataaaattagag-------------acgacaagagctctccagtattcttaaacggtagcccttggt Smik.....: acatactgtaagtttcgcgctacctgcgaaatgcctagaatggtcacatgaccaaaagataaaagaactgtaccaagtataaagaaatttatcgatcatcttcatcagatagatcattat consensus: ********** ****** ******** **** ********* *** *** ** ** ** * ** * * * * * ** * ** * * * *** * * * Smik_spli: DDDDDD 360~480: Scer.....: tgtgatacagc-----cacatgaaca--gattcccactgcagccttttttgttgggttcgaatagacaagataaataagagcagttacactatataatatatatatatatatatatatat Smik.....: tacggattagcagtagcacatttccaaggatgtgtactttttcagtcgccctttttttcgaacagagttggtttgcaagagtaatcacaacgtataattgtttttactgcagactcgatg consensus: * * *** ***** ** *** *** * * ** ****** *** * * ***** * * *** ****** * * * * * 480~600: Scer.....: atatatta-cattactgacctca--aagcatcacaaatgtgtcgcttccttcttcgccttttagttgaagacatccttttcaatcttcctccttacaaacccgagcgtcctgcttgcata Smik.....: atacatgagtgttatatatagtatctgataccaccaaagtttcatagggtatcttcctttgtggctgaaagcattttcttgttctttcgctatagagggcaccggtgttttgc-tgcgtt consensus: *** ** * *** * * * *** ** ** ** * * * ** * * **** *** * ** *** * * * * ** *** *** * 600~720: Scer.....: taaaaaaatcaaggcagatgaagagataaatatagtaatatttcat-tctttgagccgtacta-----agtatacaATGTCAAATCCATTTCAAAATATAGGGTATGTGTAAAAGAAATA Smik.....: caaaaaaatcaagatgattcaaaagaagaaaataacaataccacttctctctagaccatgctaaaatgaacaaacaatgtcaaatccgtttcagaatatagggtatgtatcaaaaataag consensus: ************ * ** *** ** *** **** * * *** * ** * *** * * ************** ***** ************** * *** * * Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >================ 720~840: Scer.....: GGGAAACATCTATTCGTAAAGCCTAAACTAACATTGGATATCTTTTTCTATTTCCCGG-ACTTCTTTTTTGGTTATTTCCTTATTGGCCTATCCCTTGAAGCAGAGTTTGATTGCACCAT Smik.....: aaacgaactatagttataaatgttaagctaacattagacgtcttatcttatctaccggcaactcttccatggttaatcccttatcgatcaatgtcttgaaaatgagatagattgaatca- consensus: * * ** * **** *** ******** ** **** * *** * **** * **** ****** * ****** * * ** ****** *** * ***** * ** Scer_spli: BBBBBBB known....: ======================================================================================================================== 840~960: Scer.....: ATATATAACCAAAGTGAAGACGAAAGTAGGAAAACACTACCAATGCGATTTCAACAGTAAGAATTTACTATACATTTCTGCAGCCGGGATTGCGTCTATTTATGTGGTCAAGACCATAGT Smik.....: -tacgtaaccaaagtgaagaggagggcagaagaagg-aagcaatgcgattattatagtaaaaatttactttacatttctgcagctggtattacatccatttttattgttaagactatagt consensus: ** *************** ** * ** * ** * ********** * ***** ******** ************** ** *** * ** **** * * ** ***** ***** known....: =====================================================>= 960~1080: Scer.....: GAAAGCTAGAAGAGATGCTAAATTTATACCAAAGGCGCGGGGAAACAATGGTGAAGTGAATGAAAAAAACTATTATGATAACCTTGCTCAAGTCAAACCAGGGTTCCCCATACCTAAAGA Smik.....: gaagtctaggagggatgctaaattcataccaaaagcgcggggaaatagtgatgaaATGAATGAGCGAGATTATTACGATAATCTTGCCCAAGTAAAACCAGGATTTCCCCTGCCTAAACA consensus: *** **** ** *********** ******** *********** * ** **** ******* * * ***** ***** ***** ***** ******** ** *** * ****** * 1080~1200: Scer.....: TGGAGGAGACAACATTGATTGCTCTGAGGACCATCAATTAGTAAGAAAGAGTAAATATGAAGGTAGCGGGCTTAGTGCTGTAACAAGAAAAAGAGGTGACAAATTAGGTTTTTTAGATAG Smik.....: TGGAGACAACAGTATTGACAATTCTGAAGACCATGGGTTGGCAAGAAAGAGTAAATATGAAGGTAGCGGACTCAGCGCGGTAACAAGGAAAAGAGGTGACAAATTAGGCTTTCTAGACAG consensus: ***** *** ***** ***** ****** ** * *************************** ** ** ** ******** ******************** *** **** ** 1200~1320: Scer.....: GAGGAGAAACGAGTAAcacacgtttaatcaacctatccattttttcaatgcagtattatgtatatatatattcatcgcactgtaaatagtgacatat-tatgagtcaaatatgc-cgaat Smik.....: GAGAAGAGATGAGTGAtatatatt-----actcgattattattttcaatg------tgcatatgtatatattcatgagtctgtaaatagcgacgtatgtttgagtcaagaaagtatcgat consensus: *** *** * **** * * * ** * * ** * ********* * *** *********** ********** *** *** * ******** * * ** Smik_spli: DDDDDD 1320~1440: Scer.....: aaactttaaaagtgagaaaagccgtcaccgatgagtaggttagcgtcacctagtggcggtggtaaatattattacataaacatatcaaagttttattaatacattttttaatcctttaaa Smik.....: aaa--ataaaagttaaggaagtaact-ctgttccctggagtagcgttgttgtatgatgatgt--gatattattttat--acatatcaacactttataaatacacttcttaattcttc-aa consensus: *** ******* * *** * * * * * ****** ** * ** ******** ** ********* ***** ****** ** ***** *** ** Smik_spli: DDDDDD 1440~1560: Scer.....: ttttctggaaactaatacataatgaaactcggaa-aaattaa----atttaataaaaccaaattaaatcaaacaaaaaattgacaattaa------------------------------ Smik.....: ttttggaaaaacttatatat-atgaaacggagaagaaattaactttattaaattaaattaaaataaatcgaatagaaaa-tgaaaaccagttatttcttttcaaaatagtcggccatttc consensus: **** ***** *** ** ******* *** ******* *** *** *** *** ****** ** * **** *** ** * Smik_spli: BBBBBBB 1560~1635: Smik.....: tttgtctaagtcctctagactctttttagcaggtctttctctctttggtttgctttgggttttggccatagcagc { alias......: ['YRA1', 'SHE11'] chromosome.: 4 description: Nuclear RNA-binding RNA annealing protein end........: 1237993 exons......: [(1, 285), (1052, 1447)] gene.......: YRA1 introns....: [(286, 1051)] length.....: 1447 name.......: YDR381W plength....: 482 start......: 1236547 tdist......: 293936 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 2 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 732), ('Smik', 732)] ->[('Scer', 39)] ->[('Smik', 155)] ] [ ->[('Scer', 1488), ('Smik', 1488)] ->[('Scer', 452)] ] 0~120: Scer.....: aaacttgtgggcgc-aattataaaacactgctaccaattgttcgttttctgttcattaacacataaaaaacccttatgtaactatatttacaaagtaaatacgtatatta-aagctattt Smik.....: ggatatgtagccaccaactataaaacagaaccaatgatatttttctttccatct-----cacataaaaacttctcatataactatgttcacgaaataaatatataagaaataaactatgc consensus: * *** * * * ** ********* * * ** ** **** * ********** ** ** ******* ** ** ** ****** ** * ** **** Scer_spli: DDDDDD 120~240: Scer.....: taccactaccacag-agttctttgtccagttgctagt-attttttttttcgcgacgaggcaggggcggggag----------acgtgttgtttttccacggctttcggctcaccacttga Smik.....: tcgtattattattgtaattattccttttcctgtgcgtcagtatttttttcgcgacgacgcaaggacggtggggtgcgggccgacgtgttgtttttccgtggctttcggtttacaatccga consensus: * * ** * * * ** ** * ** ** * * *************** *** ** *** * * *************** ********* * ** * ** Smik_spli: DDDDDD 240~360: Scer.....: agaactataaaaggccgccaaatttatcctttttcacttcttccgttcgcttttttctgtcattcctat-cgtgtgtttagtagtaggtttttttgttagaagaagttttatccgaaaac Smik.....: agag-tataaaaggccgccaa-tttgtttttttccattcctttcgttcgccttttctcagggatgttattcttctacttc........................................ consensus: *** **************** *** * **** ** * *** ******* **** * *** * * * ** **************************************** 360~480: Scer.....: tatcgaagacaaatagataaaaaaatctccctcgttctatttgaaactttaagaaatccatattaagaaaatacctacatctgctaaATGTCTGCTAACTTAGATAAATCCTTAGACGAA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 480~600: Scer.....: ATCATTGGCTCTAACAAAGCAGGAAGTAATAGAGCCCGTGTCGGTGGTACTCGTGGTAACGGTCCAAGAAGAGTTGGTAAGCAAGTTGGTAGCCAACGTAGGAGCCTTCCAAACAGAAGA Smik.....: ...............................................................ccaaaaagagttggtaagcaagttaatagtcaacgtaggagcattccaaacagaaaa consensus: ******************************************************************* ******************* *** ************ ************ * 600~720: Scer.....: GGCCCTATCAGAAAAAATACTAGGGCACCTCCAAACGCAGTCGCTAGAGTTGCCAAGCTCTTGGACACCACTAGAGAGGTCAAGGTCAACGTCGAAGGTTTGCCAAGGGACATTAAGCAG Smik.....: ggacctatcagaaaaaacgtcagggcccctccaaacgctgtcgctagagttgccaagcttttagacaccactagagaggtcaaggttaacgtcgagggtttgccaagagacattaagcag consensus: ** ************** ***** *********** ******************** ** *********************** ******** *********** ************ 720~840: Scer.....: GATGCTGTAAGAGTATGTT-AATACGTGAAATGAGAGCTATTTGTTTAGTTACTCGCATCGTCTCGTGTGGATACGAGAAATATTCTTTGTAAGGAAGGATATGGCACACGCTTTTGATC Smik.....: gatgctgtaagagtatgttgaatac-----atgagagctatttatttagttactcgcatcgtctcgtgtggatacgagaaagattctttgtaaggaaggatatggcgcatacttttaatc consensus: ******************* ***** ************* ************************************* ************************ ** ***** *** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >=========================================================================================================== 840~960: Scer.....: AAGAATTCTCTTTTTAGAGATGAAGAAAGAGTCCGAAATACTTC-GCTAGAG--AAAATACAAAAAGAGTATCGTTTTCATAAGCCAACCATACCAATTTTTTTCAATACTTCAAATCAT Smik.....: aagagttctccatcttagagtgaaggaattcaagaaaaaatttccgctgggagaaaaatttagagagagtaccatttcggtaagccaaccattctattttttagaaacgc----aattat consensus: **** ***** * * ***** ** *** * *** *** * ***** * * ****** * *** ************ * * ***** ** * *** ** known....: ======================================================================================================================== 960~1080: Scer.....: GGCCTATAAGGTTGGAATTACCAGCTACCACTGAGAATGGGTTTGTTCTTATTGGCTGGGTTAACTCAAATCAATCT----GACTATCTGCTAATCTGTCAATCTTACATTTTTAAGCTG Smik.....: gacctacaaggtttgaaatatcagttgccacggaaaatggttattttcatattggttaggttagctcaaatcaatctatctgtctatctgtcaactaatcaatcttatattct-agattg consensus: * **** ****** *** ** *** * **** ** ***** * * *** ****** * ***** ************* * ******* ** ********* *** * * ** known....: ======================================================================================================================== 1080~1200: Scer.....: GCGT-ATTGTGTCGCCTCGACCGTGATAGTTAGTTCCTATTTTTAATAA-GCGTATCATCCAATACTGAAGTT-GTGGAAGGATCAATTAATTTTGTATCCTTTCAAGAGGGAGTAGCTT Smik.....: gcattgttttgtctcattgaccgtgatagtttcgttctattttcaataaagcgtatcattcaacactggagtttgcaggaggatcaatttgatttgtattcttctaagagggagtagctt consensus: ** * ** **** * * ************* * ******* ***** ********* *** **** **** * * ********** ******* *** *************** known....: ======================================================================================================================== 1200~1320: Scer.....: TCAGTTTCGAATGGCACCATTTTCAAAAAATAGCTATGGGAAACATGTCTTTCATGAACGTTCGAAAAGATATGAGTGCATCGCTTCATTTTTT-TATTATGATA---GTTACAAAAATA Smik.....: tcagtgtgggatgacattagtttcaagaaataactatgggaaacatgtttttcatgcacttacgaacagatatgcatgcattgcttggttttttatattatgataattgttacgaaaaaa consensus: ***** * * *** ** * ****** ***** *************** ******* ** * **** ******* ***** **** ****** ********** ***** **** * known....: ======================================================================================================================== 1320~1440: Scer.....: TTTGATTTGAGACACCTAATGAAACCAAAGAGGAACTCACCCATCGTGGTACATGTTTATTTGAGGGTTTATTTTTCCTACGCAATGGTATACTTT-TAATACTCTCAACTCCTTGATTG Smik.....: cttgatttgaagcacctaactataccgaccgaagaaccacatgg-atgatacatgtttttttcgatggctgttttaactggacttttgtattctttctaatattctgatctgcttgattg consensus: ********* ******* * *** * * *** ** ********* *** * * **** ** * * **** **** ***** *** * ** ******** known....: ======================================================================================================================== 1440~1560: Scer.....: TTTGTGTATTGTCCCTTCCTTCTTTGATTTTATATCATAGAGATATATGACTAACTTTTTTTTTTTTATTATAGGAATTTTTTGCATCTCAAGTAGGTGGTGTTCAAAGAGTTTTGTTGA Smik.....: tttgtgtcatatcttttcatttttcgaacttatatcatgaagatatgtgactaactttttttt-------acaggaattttttgcatctcaagtaggtggcgttcaaagggttttgttga consensus: ******* * ** *** ** ** ** ********* ****** **************** * **************************** ******** ********** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ========================================================================>= 1560~1680: Scer.....: GTTATAACGAAAGGGGCCAATCTACTGGTATGGCTAACATCACATTCAAAAACGGTGAATTGGCCAGAAGGGCTGTTGAAAGATTTAACGGCTCTCCAATCGATGGAGGCAGATCAAGAT Smik.....: gttacaacgaaagaggccaatctactggtATGGCTAATATCACATTTAAGAACGGCGAATTGGCCAGAAGAGCGGTCGAAAGATTCAACGGTTCTCCAATCGATGGGGGTAGATCAAGAT consensus: **** ******** *********************** ******** ** ***** ************** ** ** ******** ***** ************** ** ********** 1680~1800: Scer.....: TGAGACTTAACCTAATCGTTGATCCAAACCAACGCCCAGTCAAAAGTTTAGCCGACAGGATCAAGGCTATGCCACAAAAAGGCGGAAACGCTCCAAGACCAGTAAAGAGGGGTCCAAATA Smik.....: TGAGATTGAACTTAATTGTTGATCCAAATCAAcg...................................................................................... consensus: ***** * *** **** *********** ******************************************************************************************* 1800~1920: Scer.....: GAAAAGCTGCTATGGCAAAATCCCAAAACAAACCAAAGAGAGAAAAGCCTGCTAAGAAAAGTCTTGAAGATCTGGACAAGGAAATGGCGGACTATTTCGAAAAGAAATAAttaattgtca Smik.....: .....gctgctatggccaaaacccaaagcaaaccaaagagagaaagacctgctaaaaagagtctagaggacttagacaaagaaatggccgactattttgaaaagaaataactggttttca consensus: **************** *** ****** ***************** ******** ** ***** ** ** * ***** ******** ******** ************ * ** *** 1920~2040: Scer.....: attttttgtttgatttaatttggttttattaaat----ttaattt-ttccgagtttcattatgtattagtttccagaaaatttaaaggattaaaaaatgtattaataaaactttgatatg Smik.....: -ttttctattcgatttattttaatttaatttaataaagttaatttcttctccgtttcat-atatataagtttttccaaaatt-gaagaattaagaagtgtatttataaagtgttgatatg consensus: **** * ** ****** *** *** *** *** ******* *** ******* ** *** ***** ****** *** ***** ** ****** ***** ******** 2040~2160: Scer.....: tttatgtaataatatttaccaccgccactaggtgacgctaacctactcatcggtgacggcttttctcacttttaaagtttattcg-gcatatttgactcata-atatgtcactatttaca Smik.....: t--ataaaataatatc--acatcatcatacaacaacgctactccagggaacagagtta-cttccttaactttta--ttttatcgatactttcttgactcaaacatacgtcgctatttaca consensus: * ** ******** ** * ** ****** * * * * * * *** * ******* ***** * * ******** * *** *** ********* 2160~2224: Scer.....: gtgcgatgaatatatatatacataatactgcattgaaaaaatggataggttgattaaacgtgtg Smik.....: gactcatgaatatatacatatgca------cattgaaaataataatcgagtaat-atata.... consensus: * *********** *** * ********* * ** * * ** * * **** { alias......: ['NCB2'] chromosome.: 4 description: repressor of class II transcription end........: 1266887 exons......: [(1, 37), (130, 533)] gene.......: NCB2 introns....: [(38, 129)] length.....: 533 name.......: YDR397C plength....: 177 start......: 1266355 tdist......: 265042 type.......: ORF up.........: 0 } Scer: 5 donors and 3 branches Spar: 3 donors and 1 branches Smik: 3 donors and 0 branches Sbay: 4 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1308), ('Scer', 1304), ('Spar', 1308), ('Spar', 1304), ('Smik', 1308), ('Smik', 1304), ('Sbay', 1308), ('Sbay', 1304)] ->[('Scer', 735), ('Spar', 735), ('Smik', 735), ('Sbay', 735)] ->[('Sbay', 1021)] ->[('Scer', 491)] ->[('Scer', 1209)] ] [ ->[('Scer', 795), ('Spar', 795), ('Sbay', 795)] ->[('Sbay', 161)] ->[('Scer', 499)] ->[('Scer', 667)] ] 0~120: Scer.....: ------------------------------------------------------------------------------------------------------cggtaatgaacaattata Spar.....: ------------------------------------------------------------------------------------------------------cggtactaaacaattata Smik.....: gagtgggctgcacaccaaaacgttgttgtccaaagctacggtcacgtagcacaaatattgacctgatgggtcgtaagcggaaagtacaacaggtgaatccatcaatagtaaataattata Sbay.....: ------------------------------------------------------------------------------------------------------caataatgaattttcaca consensus: * ** * ** * * * 120~240: Scer.....: aggcaaatgtgtcttttaccctcttgctaagccaagtt-taaactatatatgctctgcatctatctttacatacatatatcctatccaatacttgttaattttt----tcacctcatcgc Spar.....: atgcaaaagtcccttctgccctcttgctaagccaatta-taaactatttaccttctgcatctttatttacatacatatatt-----caatactgattaattttt----tcacctcatcgc Smik.....: atacctgattatcttttacctacctgctaagcaaaaa--tatactcaat--cttcggcatccataattccatacgtatata-----caatacttgctaaatttt----tcacctcatcgc Sbay.....: atgccta-gtctcttctacttgcctgccaaaccaatcagtacactaacta--tcctacaaacatacttccatacatatatc-----caaaactgctaaatttttcacctcatcgcttcgc consensus: * * * *** * * * *** ** * ** ** *** * * ** * ** ***** ***** *** *** ** **** *** * * **** Sbay_spli: BBBBBBB 240~360: Scer.....: ttcagctgcgaaag---attagaaaaagaaatgaaaaaaaattggataaaatttttttgtcaagaagctcatccccgtgttaaatgacaatca-aagaataaggggaactgtacaacacg Spar.....: ttcacctgcgaaaagacattagaaaaagaaatga--aaaaattggataaaatttttttgtcaaaaagctcatccccgtgttaaatgacatacc-aagaataaggggaacagtacaataag Smik.....: ttcacctgcgaaaagatattgaaaaaagaaa-----aaaaattggataaaattttcttgtcaagaagctcatccccgtgaaacgtgacatattaataaataaggggaactgtataatatg Sbay.....: ttcacctgcgaaaagacgatggaaaaagaaa----aaaaaatcaaataaaatttttttttcaagaagctcatccccgtgataagtgacgcccagaaaagtaaggggatcgttgaagtaga consensus: **** ******** * ********* ****** ********** ** **** *************** * **** * * ******** * * * * 360~480: Scer.....: ttcaaccaaaactattgtaaaga-aatgccac-cactatgcagcatagcctg-ttcatgcgaatagtcg-ccgcaaaaattacgatctggttt-aatcagctc--gggctctta-tcttt Spar.....: tccaa-cacagctaatggaaaga-gatgcctt-tactatgcagtgcaaccta-ttcattccgtaactcgacagcaaaaactgcgaacatgctt-agccagctccgagtctctta-tcttt Smik.....: tccaacgcaaaccaatacaaaaagattgcctt-caatatatacaataatctg-tctgtgccactactagcctaaaaaattt--gatatgctt--aattacttccaagtttctta-tctta Sbay.....: gcaggaagagacaactacaagggcaataccttctgatagacagcatatctgagctggcgccactgctgctgtgtaagcctgacgatctttttcgaatcggttctcactctcttgttccct consensus: * * * ** * ** ** * * * * ** ** * * ** **** ** 480~600: Scer.....: ggcgtattccagtatgtgcaattaactcttgcaccactttaaaacgcccagcccgctgc---actctccctcctatataaatggaagcggtttttggtcgcgcttttcgccctctgctcg Spar.....: gacgcaatgcaggatgtgcaattaatagtttcaccaccttaaaacgcccagcccgctgc---tctctccctcctatataaatggaagcgg-ttttggccgcgcttttcgccctctgctcg Smik.....: aacgcactgaaatatgtgccgttaatatcttcacctctttagaatgcccagcccgctg-------ctctctcctatataaac-------------ggccgcgcttttcgccctctgctcg Sbay.....: attgtatcccaacacgcac----agcaattcgactgcttcaaagcacccaactggctgcccttctctctctcctatataaacagcagcgc-atttggccgcgcttttcgccttccggccg consensus: * * * * * * * * ** * * * * **** * **** *** ************ ** ************* ** * ** Scer_spli: DDDDDD BBBBBBB 600~720: Scer.....: ccttgtcgatttctatcgtgcagagttaccagtataag-gtgggc---aagaaatcataacgatatttactaatacagttgtacctattaattaattgATGGCTGGAGACTCCGATAATG Spar.....: ccttgtcgtcttctgtcgtgtagagttaccagtataag-gtaggcaagaagaaatcataacgacacctactgatacaattgtactcattaattaattgatggctggagactccgataatg Smik.....: ccctgtcgtcttctatcgtgtagagttaccagattaag-actggcaagaag-aatcaaagcgacattcactgataccgttgta-ttattgattaattgatggctggagactccgataatg Sbay.....: -cttgccgtcttctgtcgtgcgaagttaccagtataagtgtaggcaagaag-gctcatagtgg-gtacactgatacagtaacg-taattgactaattgatggctggggactccgataacg consensus: * ** ** **** ***** ********* **** *** *** *** * * *** **** * *** * ************** *********** * Scer_spli: BBBBBBB 720~840: total....: ====== Scer.....: TGTCGCTTCCCAAGGGTATGT-TAGTTATATTGTTGTTGCAAAACTCAAGCTTTGATGCGGGTACTGAGCGGTTATACTAACTTAGAGAAAACACTGAATGATCTTAGCGACCGTACAAA Spar.....: tgtcgcttcccaagggtatgt-tagttatattgtcgttgcataactcaagctttgacgcaagtactgtgcagttgtactaacctggagaaaatattgaATGACTTTAGCGACTGTGCAAA Smik.....: tgtcgctccccaagggtatgt-ttattgtagtatcattgtaaaacccNaaNtttgNNNtNNNNacNaNNNagNcNNacNaNNNNNgaNNaaNNaccatNNNNNNNNNNNNNNNNNNNNNN Sbay.....: tgtcgcttcccaagggtatgtgcgtttgtcttgcttttacaaaac-cgaattgtggcgt-attgcgatgctgttttactaacattgagatga-att-attgcccttagcgaccgtacaaa consensus: ******* ************* ** * * ** * *** * * * ** * * * ** ** ******* * **** * * ** ******** ** **** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD Sbay_spli: DDDDDD BBBBBBB known....: >==========================================================================================>= 840~960: Scer.....: AGATGATATCTGAAATACTGGACCAGGATTTGATGTTTACCAAGGATGCAAGAGAAATCATCATCAACTCCGGCATAGAATTCATAATGATCCTGTCCTCGATGGCTTCCGAAATGGCGG Spar.....: AGATGATATCTGAAATACTGGACCAGGACTTGATGTTCACCAAGGACGCAAGAGAAATAATCATCAACTCCGGTATAGAATTCATAATGATTCTGTCCTCGATGGCTTCCGAAATGGCGG Sbay.....: agATGATATCTGAAATACTGGACCAAGACTTGATGTTCACCAAGGACGCGAGAGAAATAATCATTAATTCCGGGATAGAGTTTATAATGATCCTGTCCTCGATGGCTTCCGAGATGGCGG consensus: ************************* ** ******** ******** ** ******** ***** ** ***** ***** ** ******** ******************** ******* 960~1080: Scer.....: ACAACGAGGCTAAGAAAACCATAGCGCCCGAGCACGTGATCAAAGCGCTAGAAGAGTTGGAGTATAATGAGT-TTATACCATTCTTAGAGGAAATATTATTGAATTTTAAGGGTTCCCAG Spar.....: ACAACGAGGCTAAGAAAACCATAGCACCCGAGCACGTGATCAAAGCACTAGAAGAGTTGGAGTATAACGAGT-TTATACCATTTTTAGAGGAGATATTATTGAATTTCAAGGGCTCCCAA Sbay.....: ATAACGAGGCTAAGAAAACAATAGCGCCCGAGCACGTGATCAAGGCCCTAGAAGAACTGGAGTATGATGAGT-TTATACCGTTTTTGGAGGAGATTCTGTTGAACTTCAAGGGCTCCCAA consensus: * ***************** ***** ***************** ** ******** ******** * ************ ** ** ***** ** * ***** ** ***** ***** Sbay_spli: DDDDDD 1080~1200: Scer.....: AAGGTGAAAGAAACTAGGGATTCCAAGTTCAAGAAGTCAGGTCTCTCGGAAGAAGAGCTGCTACGACAACAAGAGGAGTTGTTTAGACAGTCAAGGTCCAGATTACACCACAATAGTGTA Spar.....: AAAGTGAAAGAAACTAGGGATTCTAAGTTCAAGAAGTCAGGTCTCTCGGAAGAAGAACTGCTACGACAACAAGAGGAGTTATTTAGACAGTCAAGGTCTAGATTGCACCACAATAGTGTA Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNAAGTTCAAGAAGTCTGGCCTCTCTGAAGAAGAACTGCTACGACAACAAGAGGAGTTGTTTAGACAGTCAAGATCAAGATTGCACCATAATAGTGTA Sbay.....: AAAGTTAAAGAGACTAGGGACTCGAAATTCAAGAAGTCGGGTCTTTCGGAAGAGGAGTTGCTACGACAACAAGAGGAGTTGTTTAGACAATCAAGGTCGAGACTACATCAAAACAGCGTG consensus: ** ** ***** ******** ** ** *********** ** ** ** ***** ** ********************** ******** ***** ** *** * ** ** ** ** ** 1200~1320: Scer.....: TCTGATCCGGTTAAGTCGGAGGATTCTTCT---TG-Aatagaagcttctaaacaaagtaatgctatatacgaaaataaaccacatgggaatatgttaagcgcatgcatgtatgtaataaa Spar.....: TCGGATCCGGTTAAATCGGAGGATTCTTCT---TGAaatggaaagttttaaacaaaataatgctatacacgagaataaaccacatgggaa-atgttaaacgcatgcatgtatgtaataaa Smik.....: TCGGACCCTGTTAAATCGGAGGACTCTTCT---TGAaacggaaaggtttaaacaaaattatgctatatacgagagtaaaccacataggaaaacgttaagcacacgcatgtatgtatttaa Sbay.....: TCGGATCCGGTCAAATCGGAGGATTCTTCTTCATGAagtgaaaacgtttaaacaaa-tgataccatgtacgagaat----------------tgtcgagcgcatgcatgtatgtaatgaa consensus: ** ** ** ** ** ******** ****** ** * ** * ******** * ** * ** **** * * ** * * ** *********** * ** Scer_spli: DDDDDD DDDDDDDDDD Spar_spli: DDDDDDDDDD Smik_spli: DDDDDDDDDD Sbay_spli: DDDDDDDDDD 1320~1440: Scer.....: aacgaagacaagtcc--------aaaaaaaaaaaagaacgaaaaagaaacaac-ttttatatttgtatattagagtataaactaatatccttatttcaaactatcacattccactatttt Spar.....: aacgaaggcaaatcctgaaaaaaaaaacaaaaaaaaaacaaaaaagaaacaactttttatatttgtatattagagtataaactaatatccttctctcaaaatatcacattgcacaatgtt Smik.....: aacaaaggaaaacccaccagaaaaagaacaaaaaaaccaaaaaagaaaactgctttttatacttttatattagagtataaactaatatccttctttcaaaatgtcacattggattatatt Sbay.....: gaaaaa-----------------aaaattaaaaaaaaa--aaaaaaattcaac-ttttatatttgtatattagagtataaactaatatccttctttcagacaactatattgaagtccttc consensus: * ** ** * ****** **** * * * ******* ** *************************** * *** * * *** * * 1440~1453: Scer.....: ttttgtgttctcc Spar.....: tctcttctac--- Smik.....: ttcgtcttttcc. Sbay.....: ttc---------- consensus: * { alias......: ['DYN2', 'SLC1'] chromosome.: 4 description: putative light chain of dynein end........: 1319830 exons......: [(1, 25), (122, 144), (225, 455)] gene.......: DYN2 introns....: [(26, 121), (145, 224)] length.....: 455 name.......: YDR424C plength....: 151 start......: 1319376 tdist......: 212099 type.......: ORF up.........: 0 } Scer: 5 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 247), ('Scer', 251)] ->[('Scer', 7)] ->[('Scer', 366)] ->[('Scer', 568)] ] [ ->[('Scer', 300)] ->[('Scer', 424)] ] 0~120: Scer.....: tttttctgtatgtgtagtagtatccgttgttactcactacgtgtatagatgtctatttatgtctctatcccttatctctttatcttgttgcctggttctcttttccctttaaatggagat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: tacaaactagcgaaactgcagaaaaggaaagcctccaaaactactgccagggtaaaaagtgaaactgggaaacgacataaagaagagcaaattaaaaccaaaATGAGCGATGAAAATAAG consensus: ************************************************************************************************************************ 240~360: Scer.....: AGTACGCGTATGTCAGTTAATCTCAGTCACAATTTTGTGACTTTCAATACAATTTTTCTTTACTAACTCGAGGAAGAGTGAGGTTTTCTTCCATGAATTGCAGCTATTGTTAAGGCGTCT consensus: ************************************************************************************************************************ Scer_spli: DDDDDDDDDD BBBBBBB known....: >=============================================================================================>= 360~480: Scer.....: GACATAGTATGTAATTGTGCCATGATATACATGTTTTGTGTGTGTACATTTGAATATATATATTTACTAACAAGGAGAAAACTTAGACCGACAAGCTGAAAGAGGATATTTTAACCATCA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >=============================================================================>= 480~600: Scer.....: GTAAAGATGCTCTGGACAAGTACCAGTTGGAAAGAGACATTGCTGGGACGGTAAAGAAGCAATTGGATGTCAAATACGGCAATACCTGGCATGTGATTGTCGGAAAGAACTTTGGGAGCT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 600~720: Scer.....: ACGTGACACACGAAAAGGGCCATTTTGTTTATTTCTATATCGGTCCACTGGCGTTTTTAGTTTTCAAAACAGCATAAatagtgtttcttcaatagttaatcgataatcaattactattat consensus: ************************************************************************************************************************ 720~788: Scer.....: actttcatacgaatggggtgttacttttaaggacgacatataagcaatggaacgaccagttaagataa consensus: ******************************************************************** { alias......: ['RPS17B', 'RP51B', 'RPL51B'] chromosome.: 4 description: Ribosomal protein S17B (rp51B) end........: 1355542 exons......: [(1, 3), (318, 725)] gene.......: RPS17B introns....: [(4, 317)] length.....: 725 name.......: YDR447C plength....: 241 start......: 1354818 tdist......: 176387 type.......: ORF up.........: 0 } Scer: 2 donors and 2 branches Spar: 1 donors and 3 branches Smik: 3 donors and 1 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 546), ('Spar', 546), ('Smik', 546), ('Sbay', 546)] ->[('Sbay', 14)] ->[('Scer', 116)] ->[('Smik', 421)] ->[('Smik', 693)] ] [ ->[('Scer', 860), ('Spar', 860), ('Smik', 860), ('Sbay', 860)] ->[('Scer', 986), ('Spar', 986)] ->[('Spar', 91)] ] 0~120: Scer.....: tctttttgcttaatgtatatat----tttcag-actacgctgatatttt-atcgaaaatggagggtgattagagaaaaatt--atttttatcattaacctaaacatcg-aactctggcat Spar.....: cctttttacttgatgtatatat----ttttggcactaatctgaaattttcactggcagtggaacgtgattagagaaaaatg--ctcatttttactaatccaaccatcgcgactttagcat Smik.....: ccctttcactagaggtatata-----ttttaaagttaacgtgaagactt-attgacagtggattatggctagagaaaaaatgcacgctattcactaatctagtcatcgcgactctaagaa Sbay.....: cctcttcaccgaatgtatgtataaaagttgaaaaccttattgaaaatggaattgtttccaaagagccttatgcgtgacctt--ctgcaacctagcctagttaccatcgcgactctaacat consensus: * ** * * **** ** ** *** * * * * * * * ***** *** * * Scer_spli: DDDD Spar_spli: BBBBBBB Sbay_spli: DDDDDD 120~240: Scer.....: gtactttcccaatcgtgttgattttcacttatttgtttggaacgtctggaattttctaca----tatataaa-gctccctgtaacatccatacattcggt-taaaattacacccatacat Spar.....: acgtcctcctgatcgtgttgattttcactcactttgtttggacatctggaattttccatg----aaaataaa-acttcctgcagcatccatacatgtggt-taactttacacccatacct Smik.....: attagcttcaaa-cgtcttgattttcact--tttgttttgaacttcttgaattcttcaag----aaaataaatacttcctgcaacatccatacata-----gagatttacacccacacat Sbay.....: --ttcctccaagtcgtgttta-tttcact---ttattctgaacctctggaaaaatcagcgaaataaaaaaaa-acttcctgcaacccccatacaccagatattcctttagacccatacac consensus: * * *** ** * ******* ** * * ** *** *** * * * *** ** **** * * ******* *** ***** ** Scer_spli: DD 240~360: Scer.....: ttat--agtattttttccatcgttagtttttcgtattatgggcattccgaagaatttcatctggaagacgcgcattgattgatatcg-ttttctcag--aggtcgtaccgtttcgagatg Spar.....: tttccaaatctgtatttcatcattgatttatcgttttattgacaatcttaagaatttcacctggaagacgcgcattaatcgaaatcgtttttctcgggcagcccataccattaggagatg Smik.....: gtttt-tattttttttctttcacgatttcatttctttgtaggcattattggaaatttcatttgaaaggcgcacgcaaatcgtaataggttttcgag--cagcccacagcttagcgagatg Sbay.....: gctccaagaatatttttcagtattcccgacaactttttctagctttttttgaaatttta-gtcgagaacgcgcattaaacggaat---tattcgcg--ctgcccatagcaat-ggaaatg consensus: * * ** ** * * ***** * * * *** * * * ** * *** * * * * ** *** 360~480: Scer.....: agggagaaggttcaggcatcgaggtctaccgga------gcaaggccagt-ccttcctcccgttagtacctctgttaagggtaaatttcaagtaaacaga--tattttacatattaatta Spar.....: agggagaagattcaggcct--aggtctgccggg------gcaggcccaat-ccttgctcccgttagcagctttgttaagggtaaacttcaagtaaacata--tatatc-tatattattag Smik.....: agggagaaggttcaggcct--aggtttgtcggg------agagggccat--ccgtactcctgtcagtaacactgataagggtatacttgaagtaatcacgtttatatcctgtatacaaga Sbay.....: agagagaaggttcaggcc--gcggttcgctgggcctctctcaggccctttaccttgcttgtgttagtagttctgttaagggtaaactttaagcaaatacg--tatttt-tgtaatactga consensus: ** ****** ******* *** ** * * ** ** * ** ** ** * ** ******** * ** *** ** * *** * ** Smik_spli: DDDDDD 480~600: total....: ====== Scer.....: tttattttgcg-ttgtataacctagagaagaataa-atagataaagaaaaaagcagata-aaaATGGTACGTACCACGAGATGTTGATGAA---GCCGGATATGATGGACTGGGCGCTGA Spar.....: cttaacttgcatttgcgcaatcccgatacagtaaa-acagataaagataaaagcaggtataaaatggtacgtaacaagaaacgttaataaa-acgccggatatgatggattttgcattga Smik.....: ctttatgtagttttgggaaggccagaaattgacaagata-ataaagtgaaaa-taattaaacaatggtacgtaccaagaaatgttaatagaactgaaggatatgatggatttggcatgga Sbay.....: tttagcttggattctttcatcctaggagagtttaagatagataaagacaaa--caaataaaaaatggtacgtatcaagaaatgtggatgga-gcaccaaacgtgatggatatgatatcga consensus: ** * * * * * ** * * ****** *** * ** * *********** ** ** * ** ** * * ******* ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >===================================================== 600~720: Scer.....: ACACATGAAATGAGG--------GCAAGGTTTGCAGAGAGATTGAAAGCGTTA-TGGGAACGAGGGGACCAGCAGGGCATTCTT-------ATTTATGAGCAGATTAGAAAACTCCATTA Spar.....: aaatatgaaataaggcaaagtttgcaaagtttgcaaagaaattaaaaacattgttggagacgaggagtccagtaggacttgccc-------atttacgagcagactagaaaacctcacta Smik.....: aaacatgaaataagg--------gcaaattttgc--agaatttccaaagat---tgggaacgaagatatcagcagaacatacat-------acgtatgagtggaccttcagttctcagta Sbay.....: aaacatgaccaaagg--------gcagaacttattgaaaaatgtggaaaacag-tgaaaacaagagaaccagtggaatatatttcggataaatagatgagaaggctatgaaacattaatt consensus: * * **** *** *** ** * * * * ** ** * *** * * * * *** * * * * Smik_spli: DDDDDD known....: ======================================================================================================================== 720~840: Scer.....: CTGATTAGTTT--AGAAGAGCGCTCAATGAAG------------TAGTAGATATTTAAAA--GATCAC------CAAATAACCAATTGCTTTCGAATGGCACATTCTATCTTATCCAATG Spar.....: ttgatgagttt--agcagagtgttaaatggcg------------tactagatatcactat--gattat-----gcaaataaccaattgccttcgaatggcgccttctgtcttatccaatg Smik.....: tcgttgacttt--aggagagtgctagatggaaagtgagacaactttatggaaagcgagacatcttcatcgacataaaataaccaattgcgttcgaatgacacatgctatcttatccaaaa Sbay.....: acgacgggtttcaaggagaatgtgtgaggaag-----------atactaaagacctctgttctgttat-----aaaaatattcaattgcgtttaaatggtgttttccgtttaacccaaaa consensus: * *** ** *** * * * * * * * * * ***** ******* ** **** * * * * * **** known....: ======================================================================================================================== 840~960: total....: ======= Scer.....: GTCTTGA--AGAGAGGTATTTACTAACTTAAGTTGTCTCATTTGATTATTGCTATTTTTATAGGGTAGAGTTAGAACCAAGACCGTCAAACGTGCCTCCAAGGCTTTGATTGAACGTTAC Spar.....: ctattca--agagaagtatttactaacttaagttgtttcatttgactattgttatttttacagggtagagttagaaccaagaccgtcaaacgtgcctccaaggctttaattgaacgttac Smik.....: ctatgga--agaggaatgtttactaactttagttataatctttgattaATGTTATTTCCACAGGGTAGAGTTAGAACCAAGACCGTCAAGCGTGCCTCCAAGGCTTTAATTGAACGTTAC Sbay.....: ttgttgacgaaagagcattttactaacttatgttataatcttcgattataaatatttccacagggtagagttagaaccaagaccgtcaagcgtgcctccaaggctttgattgaacgttac consensus: * * * * ** *********** *** * ** ** ** ***** * **************************** ***************** ************ Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =============================================================>= 960~1080: Scer.....: TATCCAAAGTTGACCTTGGATTTCCAAACTAACAAGAGACTTTGTGATGAAATTGCAACTATCCAATCCAAGAGATTGAGAAACAAGATTGCTGGTTACACTACTCATTTGATGAAAAGA Spar.....: tatccaaagttgaccATGGATTTCCAAACTAACAAGAGACTTTGTGATGAAATTGCCACCATCCAATCCAAGAGATTGAGAAACAAGATTGCTGGTTACACTACCCATTTGATGAAAAGA Smik.....: TATCCAAAGTTAACTATGGATTTCCAAACTAATAAGAGACTTTGTGATGAAATTGCCACTATCCAGTCTAAGAGATTGAGAAACAAAATTg............................. Sbay.....: tatccaaagttgaccATGGATTTCCAAACCAACAAGAGACTTTGTGATGAAATCGCCACTATCCAATCCAAGAGATTGAGAAACAAGATTGCTGGTTACACTACCCATTTGATGAAGAGA consensus: *********** ** ************* ** ******************** ** ** ***** ** ***************** ***************** *********** *** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 1080~1200: Scer.....: ATCCAAAAGGGTCCAGTTAGAGGTATTTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGATCAATACGTCCC--AGAAGTCTCTGCTTTGGACTTGTCTCGTTCTAACGGTGTTT Spar.....: ATCCAAAAGGGTCCAGTTAGAGGTATTTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGATCAATACGTTCC--AGAAGTCTCTGCTTTGGACTTGTCTCGTTCTAACGGTGTTT Smik.....: .............................................................aagatcaatacgtccccaagaagtctctgctttggacttgtctcgttctaacggtgtgt Sbay.....: ATCCAAAAGGGTCCAGTTAGAGGTATCTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGATCAATACGTCCC--AGAAGTCTCTGCTTTGGACTTGTCTCGTTCTAACGGTGTTT consensus: ************************** *********************************** *********** ** *************************************** * 1200~1320: Scer.....: TGAACGTTGACAACCAAA--CCTCTGACTTGGTTAAATCTTTGGGTTTGAAGTTGCCATTATCTGTCATCAACGTTTCCGCTCAAAGAGACAGACGTTACAGAAAGAGAAACTAAaaagc Spar.....: TAAACGTTGACAACCAAA--CCTCTGACTTGGTTAAATCTTTGGGCTTGAAGTTGCCACTATCTGTCATCAACGTTTCCGCTCAAAGAGACAGACGTTTCAGAAAGAGAAACTAAgaagc Smik.....: taaatgttgacaaccaaacccctccgacttggttaaatctttgggtttgaagttgccattatctgtcatcaacgtttccgctcaaagagacagacgttacagaaagagaaattaagaagc Sbay.....: TGAACGTTGACAACCAAA--CCTCTGACTTGGTCAAATCTTTGGGTTTGAAGTTGCCATTATCTGTCCTCAACGTTTCTGCTCAAAGAGACAGACGTTACAAAAAGAGAACTTAAgaagc consensus: * ** ************* **** ******** *********** ************ ******** ********** ******************* ** ******** *** **** 1320~1440: Scer.....: atgaattgatatagttattatcatgtcgtctgttttactccatttcattgaggactctccttatgtatagttaaataatttcaatatcatctaaaatatgaaagatatgattcattatt- Spar.....: atgaattgatatagttattatcatgtcgtctgttttactccatttcattgaggactctccttatgtatagttaaataatttcaatatcatctaaaatatgaaagatatgattcattatt- Smik.....: atgaattaatatagttactatcatgtcgtctgttttaatccattccattgaggactctccttatgtatagttaaataatttcaatatcatctaaaatatgaaagatatgatccattatt- Sbay.....: atgaattaatatagttattatcatgtcatctgttttaccccttttcattgaggactctccttatgtatagttaaataatttcaatatcatctaaaatatgaaagatatgattcattatta consensus: ******* ********* ********* ********* ** ** ****************************************************************** ******* 1440~1526: Scer.....: ----agggatgtattctctt---aattataagca-ttttgttactga-------atatagcacctttgatcaactttatgaagcgt Spar.....: ----aggaatgtattccctt---aattataagcatttttgttactga-------atatagcagatctgatcaatattataaagtat Smik.....: ----aagaatgtgttctcta---gattagaagca-ttttgttactaa-------agatagcaggtttagacaatattattaagttt Sbay.....: aaaaaggaataccatctcctcaagatcatttgtttccttttttctaaaaaatgtatatagcagatttgaacaa--ttatgaactat consensus: * * ** ** * ** * * ** ** ** * * ****** * * *** **** ** * { alias......: ['RPS18A'] chromosome.: 4 description: Ribosomal protein S18A end........: 1360787 exons......: [(1, 47), (483, 876)] gene.......: RPS18A introns....: [(48, 482)] length.....: 876 name.......: YDR450W plength....: 292 start......: 1359912 tdist......: 171142 type.......: ORF up.........: 1 } Scer: 1 donors and 3 branches Spar: 4 donors and 5 branches Smik: 1 donors and 5 branches Sbay: 3 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1104), ('Spar', 1104), ('Smik', 1104), ('Sbay', 1104)] ->[('Sbay', 199)] ->[('Sbay', 750)] ->[('Spar', 729)] ->[('Spar', 770)] ->[('Spar', 903)] ] [ ->[('Scer', 1508), ('Spar', 1508), ('Smik', 1508), ('Sbay', 1508)] ->[('Scer', 1573), ('Spar', 1573), ('Smik', 1573), ('Sbay', 1573)] ->[('Sbay', 2022)] ->[('Scer', 515)] ->[('Smik', 301)] ->[('Smik', 702)] ->[('Smik', 1695)] ->[('Spar', 632)] ->[('Spar', 750)] ->[('Spar', 2263)] ] 0~120: Scer.....: tattagaaatcggtgatgtgtgtatctct-ggtcaatttcacaatgttatgcccttagatatgt-gtttattcacgttcactgtgtgttcctgatat-ttagctcatcgcccagatcttt Spar.....: tataagggg-cggtgatgtatatctctct-ggtcaatt-cacagtgttgtgtccttagctatgt-gtgtattcacattcaccgtattcttttaatat-ttagctcatcgcccaaatcctc Smik.....: tatcagggtaccgtaatatatttcttatt-cgtccagt-tacaatcttgtcgtcttagatacgt-ttgtattcatgttcaatatgccctttcgatatgctagctcatcgcccagatcttt Sbay.....: -gattgtgatttttggtttgttttcctataggttcaactgccgatattggccacttagatgtgccatatactcttattcatagcga--tcttaattt-ttagctcatcgcccaaatcttt consensus: * * * * * * * ** * * * ** ***** * * * ** ** **** * ** * ************** *** * 120~240: Scer.....: --ctaaaaaattttcaagagaatacccggatgaaaaagcgtgttcggatt-cccatcact-taatgaagcttatatct-gacagcgcaggaaaagcac-aaaatagaacctagccacttc Spar.....: g-cttgaaaatttttcaaaacatacccggatggaaatg---attaggatt-cccgt-act-cgatgtggcttatgttttggcagcgcagcaaaagcacgaaaataaaacttagccattcg Smik.....: ctcttgaaaaattttca-ataatacccggacggaataacatgtccagatt-cgcatcatt--------attcat-------caa-gtaaaaaaa-----aaggtataatttcgatactta Sbay.....: --ctcgaaaattttcaa--ggatacccggacatgaaac---gcgcggatttcccactattaccagtaaactcatcaagagtatgcatggcaaaaccagaaacgtggatctagctttttca consensus: ** **** *** * ********* * **** * * * * * ** **** ** * * * Sbay_spli: DDDDDD 240~360: Scer.....: gcgtaaa-agctcataatgttaacgatatagtaatattttgacgc-atcgaactttatcacccgcagcataaagtactgatac---tacaagtttttttcgttattcttaccggtattgc Spar.....: gcgtata-atttcatcatgttgacgatacggtaatattttaatgccattgaagtttctatactgtgacatatcgtactagtat---tacatgatctttcttatcttcttaccagcactac Smik.....: cgatacatacttcatgaagatcacaata--ataacatgct-atga-aatgaaccccctatatattaacagttcacgcaactata--tgaaggcatttttttatttacttagcaatacaac Sbay.....: accattatattctgctatgtacagaatcaaacagctctccaatgaatgaaagcttctcagggtttagcgcaaagtcttcataaaacttgcgaaaatgtcaaactatttcatccttttacc consensus: * * * * * ** * * * * * ** * * * * * * * Smik_spli: BBBBBBB 360~480: Scer.....: gctaaa---------gcagttttgcacctgaaaacaagtaaaaataggacttgaaaaaattaaatagcatacatgtataatataatct-tgatcacggcaag-tgtttcaatagagatgt Spar.....: gctcaa---------gcagct--acatttgaacacaagttagag-aggatttgaaa---ttaaata-------catataacacactct-tgaccacggcaag-catttcagtggggctgc Smik.....: gctcgatctagctctgtaattagacaattagacacgaactaaagagagattgaaca---taagataata-atgtatatag-acattct-tgattacggcaagctttttcattggacctat Sbay.....: aatagcaatgctaccttgaacttgtgcctgtatatgtgtacagaaactcttctaaa---tcaaat----------tctaacacattttatgagcgttcttgatcttttgaaataaaaggc consensus: * * * * * * * * * ** * ** * * * * *** *** * 480~600: Scer.....: ggttataatttgtcacttgtgcagtcaataccttaaat-taacttttacaaagtattttttttaaacggcccatgagcataaattgagaacgat-attattaattctagtatattttagg Spar.....: ggctataatttttcattccagtacccaagaccctgaat-tagctctaacgaggcatcttt--cagagaacccgtgggcataagatcacaatgattgttaatagttccaatatatcttaga Smik.....: gactataatttgggtttttgttacctagggccttaaat-tagatccaaccaagtgactta---aaaaaacatttcagtgtaattcgatggctgc-tttaatattcttattgcatttcaga Sbay.....: gattgccat---agaaatacgca---aagaccgcaaatctgacttgaaagaagtatctcag-agaggagcaaatgagtacctatcggctgttcctctgattgggtctaatgt-tctcgga consensus: * * ** * * ** *** * * * * * * * * * * * * * * * * * Scer_spli: BBBBBBBB 600~720: Scer.....: -aacagcaggccattatatccaaaacttttttaaaatagcatccacatcacttactggcgtacagtttcgtgtctggcaacaaaaaa-gtacatttaatttcaatgattaaaa-agacat Spar.....: -aactaccggccacttcatccaggacttttcttat-taacaaccatga-atcttttattgcgcagtttcgtgtctgacaacaaaaa--gtacaattaatttgaatggctatga-agacgt Smik.....: taagaactgactttttcatctac-acttttctagcgtaacatctattacttgcttcatcgcctaagtttatctcggaaatgaaacgc-gaagaaatgattgtaattaacgggccaaaaac Sbay.....: -agaatcagcttcctttctctcataacaactcatg--aagggccacaacgttcactcttgcgcaagctcttgttttgaaacgtcggcagcagcggtcttccggatagccgccaagacgtt consensus: * * * * ** * * * * * * * * * * * * * * ** Spar_spli: BBBBBBBB Smik_spli: BBBBBBB 720~840: Scer.....: taaacatccgtacattac-gcacccatgcatgctatctgaaaatattct-acatgctgcttttagaaatttgaagcggc-atatggtgtttccttgcggagacgcgcgctcaggggaact Spar.....: tcaacatccgtacgtttt-ccacccatacctactaactaaaaatattcttgtatg-tacattttgacctttggagcggccatatgatgtttgccagtagagacgcgcgctcagggaaact Smik.....: tcaacatccgtacctttttaaacccattacttctatctggaaat-ttct--ctccctaaattttagattttgaggcggc-ataagatgttcgccgacaaaggtacaccgtttgggcaatt Sbay.....: ttaacatccgtacatttgcccacccgtacagtatgtttgaaa---tttt-------cagatttcgcattttcattccgatgatgggtttttcctgggaaaggcgtaggttgcgggcggtt consensus: * *********** ** **** * * * ** ** * *** *** * * * * ** * ** * *** * Spar_spli: DDDDDD BBBBBBB DDDDDDD Sbay_spli: DDDDDD 840~960: Scer.....: gc-gattccgaaagatgccttt-cccagtcccatatgcccatcccaagatcatgcccgggagagcaaatgtcgccccagccaggtcggacacatct-gtcattcgaccactaagtattgt Spar.....: gc-agttcctaaagacgccttt-cccggtttc-tgtgttcatcccaccatcacggccgggaaagcatgtgtcgccc-agccaggtcagacccatct-gtcattcgaccactaagtattgt Smik.....: ac-agttccgaaggacgcctttacccaaacccatgtgtccatcccaaaattacggtcagcaaagcgtgtgtcgcgc-agccaagtcagaaccatct-gtcattcgaccaccaa-tattat Sbay.....: gccagcttctgaacacaccctt--tccggcctacgtgtgtatcccagtatctcggtcgggaaagtgtgtgtcgtcc-agccagctcagacccatctagtcactcgaccactaa-taatag consensus: * * * * * ** ** * ** ****** ** * * * * ** ***** * ***** ** ** ***** **** ******** ** ** * Spar_spli: DDDDDD 960~1080: Scer.....: caaagctagggttaattgaagatagctctacatgttattagtagagtttttaaacgttgagatactagtgaacgtatacacaagagcggataaaa-gATGTCTTTAGTTGTCCAAGAACA Spar.....: caaaactagggctaattaaagatagctttacatgttagtagtaaagttt--aaacgttgagatacaagtgaacgtatacacaagagcggataaaaagatgtctttagttgtccaagaaca Smik.....: gaaaactggggcaaattaaacatagct--acattttaatagtgaattttt-aaacgttgaaatacaagtgaacgtatacacaagagcggataaa--gatgtctttagttgtccaagaaca Sbay.....: caaaattggggctaattaaagatacct--acaagttagacgttctgcatt-gaagattgagatacaagtgaacgtatacacaagagcgggtaaa--gatgtctttaattgtccaagaaca consensus: *** * *** **** ** *** ** *** *** ** * ** **** **** *********************** **** ********** ************* 1080~1200: total....: ====== Scer.....: AGGTTCCTTCCAACACATTTTACGGTATGTTTATTATTACTAGTGAGCTATGACAAAATCGGCTAAAAACTTAAAAATATGACAGACAAGAAAGGAAATTCATTCACCTCT-TTAATCGT Spar.....: aggttccttccaacacattttacggtatgtttactattactggtgagctatgacaaaatcggctaaaagcttaaagataagacaaacaagaaaggattttcatccaccact-tctatcat Smik.....: aggttccttccaacacattttacggtatgtctattattactgaaaaactatagcgaaatcggctaaaaacttttggacacgacagatgaaagaaggaatccat----------------t Sbay.....: aggttccttccaacacattttacggtatgtttgaaat-agagatgaattatgacaaaatcaaataagagcttgacgatatgacatgcggaggagaaaagccaaccactgttgcctactga consensus: ****************************** * ** * * *** * ***** *** * *** * * **** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >=============================================================================================== 1200~1320: Scer.....: GGCGATTATTCGCTAACGACGT-GATTAAATATAATAATGATGTTC-CCGGGCTGGACTAAGAACGTAATAAT-AAGGCTGATGAACAAATTTATGGTTTATGCATCAAAAAGGAACATG Spar.....: ggcgactattggctgatgatgt-gatttaatataatgatataactc-ctgggctgggtcaagaacat--taat-aaagttgacgaacaaatttatggtttatgaaataaaaagaaagaaa Smik.....: agctattgttagatggtggttttaatttgacttaatgataaacctc-ctaaatttggttaaaaacgctatgatgaaagttaacgagcagattttacttaaagtaattaaacggaaatatc Sbay.....: gacaaatattggctaatggactagaactgatttgattccagtggccgctggagcgcgttaaaaa-gttataatggtactcgatgaacaatcctgcaat----------aaaagaactgta consensus: * * * ** * * * * * * * ** * * ** ** * ** * ** ** * * ** * * known....: ======================================================================================================================== 1320~1440: Scer.....: AATTTGGCA-TAAGCGCACATAATTAC-GGAACATTGCAAT---AGCGGTCGGAGGTAAAGTA-CCGGGAATGCTTTACAATGAATCAGCTATTGGCGGATA---TTGACCAACCAACAC Spar.....: aacgtggaa-taagtacctgtgaccactaaaaaagtgtaac---attgggcgcaaacgacgta-acatgaatactttacaataaa---------------------------------at Smik.....: acctgaggactatgcgcctgcaactactcgaaagtatgggg---aataaatgtggatgacacc-atatgaacactacgcaaacaattagttattaaaggataaatctgtaagattcaaaa Sbay.....: acaccgaaagta-gcgtttatgatgacaagaatagtggaattggagaggaaagagttaatgaatacaaccatgccccaaaacaaaacagctatagaaaagaaatgtccaggctttcacat consensus: * * ** * * ** ** * * * * ** ** * known....: ======================================================================================================================== 1440~1560: total....: ======= Scer.....: TAAAATT--TTATATCCTGCT----CCGATTTTTGTCTTGGCCGTGAAATCCATTATGCACATTT-TTTACTAACGTTTATCAATAAGTTCGGTTTCCCGTCTAAATTT-----TTTTAC Spar.....: caatatc--ctatttc---tc----ccgatttttattttggccgcgaaaaccattatatgtttttctttactaacatctattaataagt-cggttttccgcctaaaata-----ttttat Smik.....: tagtagccattactcctaatttttaccgatttttatattgaccacgaaaactttgttatcctttc-tttactaacatttatcaataaattcggcgtcccgcctaaaatc-----ttttat Sbay.....: atgaaaatacatttccctatttgtatcagtctaaac-tcagccaccacaa---ttacatgttttcctttactaacgttaattaATGAATTTGGTTTCCCACCTAAATTTACTTTCTTTAT consensus: * * * * * * ** * * * ** ********* * ** *** * * ** * ** ***** * **** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 1560~1680: total....: ======= Scer.....: GCAGTTTGTTGAACACTAACGTTGACGGTAACATTAAGATCGTTTACGCTTTGACCACTATCAAGGGTGTTGGTCGTCGTTACTCCAACTTGGTCTGTAAGAAGGCTGATGTTGATTTAC Spar.....: gcagtttgttgaacactaacgttgacggtaacatcaagatcgtttacgccttgaccacaatcaagggtgttggccgtcgttactccaacttggtctgtaagaaggccgatgttgatttac Smik.....: gcagtttgttgaacactaacgttgacggtaacatcaaaatcgtttacgctttgaccactattaaaggtgttggtcgtcgttactccaacttggtctgtaagaaggctgatgtcgatttac Sbay.....: ACAGTTTGTTGAACACTAACGTTGACGGTAACATCAAGATCGTTTACGCCTTGACTACCATCAAGGGTGTTGGTCGTCGTTACTCCAACTTGGTCTGTAAGAAGGCCGATGTTGATTTAC consensus: ********************************* ** *********** ***** ** ** ** ******** ******************************** ***** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==>= 1680~1800: Scer.....: ACAAGAGAGCTGGTGAATTGACCCAAGAAGAATTGGAAAGAATTGTTCAAATTATGCAAAACCCAACTCACTACAAAATCCCAGCTTGGTTCTTGAACCGTCAAAATGACATCACTGATG Spar.....: acaagagagctggtgaattgacccaagaagaattggaaagaattgtccaaattATGCAAAACCCAACTCACTACAAAATTCCAGCTTGGTTCTTGAACCGTCAAAATGACATCACTGATG Smik.....: acaagagagccggtgaactaactcaagaagagttggaaagaattgttcaaattATGCAAAACCCAACCCATTATAAAATTCCAGCTTGGTTCTTGAACCGTCAAAACGACATCACTGACG Sbay.....: AAAAGAGAGCTGGTGAATTGACCCAAGAAGAATTGGAAAGAATTGTCCAAATCATGCAAAACCCAACTCACTACAAAATCCCAGCTTGGTTCTTGAACCGTCAAAATGACATTACTGACG consensus: * ******** ****** * ** ******** ************** ***** ************** ** ** ***** ************************** ***** ***** * Smik_spli: BBBBBBB 1800~1920: Scer.....: GTAAGGACTACCACACTTTGGCTAACAACGTCGAATCCAAATTGAGAGATGACTTGGAAAGATTAAAGAAAATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTGCGTGTTAGAG Spar.....: GTAAGGACTACCACACTTTGGCTAACAACGTCGAATCTAAATTGAGAGATGACTTGGAAAGATTAAAGAAAATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTGCGTGTTAGAG Smik.....: GTAAGGATTACCACACTTTGGCTAACAACGTCGAATCTAAATTGAGAGATGATTTGGAAAGATTAAAGAAGATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTACGTGTTAGAG Sbay.....: GTAAGGACTACCACACTTTGGCTAACAACGTCGAATCTAAGTTGAGAGACGATTTGGAAAGATTAAAGAAGATCAGAGCTCATCGTGGTATCAGACACTTCTGGGGTTTACGTGTTAGAG consensus: ******* ***************************** ** ******** ** ***************** ************************************** ********** 1920~2040: Scer.....: GTCAACACACCAAGACCACTGGTAGAAGAAGAGCTTAAactgataagattattcaagcttaatcttttttgtacgagtacatatatttccatagcacttcctaattgacttttttttaaa Spar.....: GTCAACACACCAAAACCACTGGTAGAAGAAGAACTTAAactaataaggttaatcaagcttaatcttttttgtacaagtacatatatctccatagcacttcctaattgacttttttttaga Smik.....: GTCAACACACCAAAACCACTGGTAGAAGAAGAACTTAAactgataggattaattgaacttaatcttttttgtacaagtacatatatttacatagcacttcctaattgacttttctttaaa Sbay.....: GTCAACACACCAAGACCACTGGTAGAAGAAGAACTTAAgctgataagattatccaattttaatcttttttgtacaagtacatatatttacatagcacttcctaattaacttttctttaga consensus: ************* ****************** ***** ** *** * *** * **************** *********** * ***************** ****** **** * Sbay_spli: BBBBBBB 2040~2160: Scer.....: ataaataaagaaaagaaaattaattttgtgaccataatttcaacttgccttttttttgtacagggtttcagggataaatggacccttgaaagaatataatattacatctctatatagatt Spar.....: ataaataaagaaaagaaaattaattttgtgacaataacctcatcttgcgttttttctttgcgggttttcagggataaatagacacttgaaagaatataatattacatc--tatataggtt Smik.....: gaaaataaagaaaagaagattgattttgtgaccaaaatttcacctt--tgtcttttcaaaaaacattcaaaagatatgttgacccttgaaagaatataatattacatc--tatataagct Sbay.....: aagactaaggagaagaaaattaattctgtgacgataacttcacctt----cctgacattacaagtttcaaaagagaaacgaaccctggaaagaatataatattttaca--tctacttgta consensus: * *** ** ***** *** *** ****** * ** *** *** * ** * ** * ** ** **************** * * ** 2160~2280: Scer.....: tatgaaacaggccgctt-taaatctaaaaa--aaaacgttggtgtagtctcagtcattactttgtgtagtttttgttaatattgat-agcatcagtgctcaagaaaataaacactgagaa Spar.....: tatgaaacgggcggcttctaaatctaaaaa--agaacgtcactgtagtcgtcgtcattaatttgtttggtttttgttgatcttgatgaacatgagagctccagaac-taaccaccgagaa Smik.....: tatgaaacagtctacatttgggctagatagtgagaacatcgctgtagtcattgttgttgctt-----aaagtttatcgatcttggtaaatatgagagctccaagac-tagctcttgaaaa Sbay.....: tacgatacta-cgattttaaggcgggacgggacaaacaaccttttaaatgcagttgtt------------ttgtgtagaccc-ggtaaatatatatatgctccgaatcggccaccaaaaa consensus: ** ** ** * * * *** * ** ** ** * * * * * * * ** * * * ** Spar_spli: BBBBBBBB 2280~2287: Scer.....: aga---- Spar.....: aggttag Smik.....: aa----- Sbay.....: aaag--- consensus: * { alias......: ['RPL27B'] chromosome.: 4 description: Ribosomal protein L27B end........: 1402553 exons......: [(1, 31), (416, 795)] gene.......: RPL27B introns....: [(32, 415)] length.....: 795 name.......: YDR471W plength....: 265 start......: 1401759 tdist......: 129376 type.......: ORF up.........: 1 } Scer: 7 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 140)] ->[('Scer', 418)] ->[('Scer', 444)] ->[('Scer', 586)] ->[('Scer', 978)] ->[('Scer', 1526)] ->[('Scer', 1926)] ] [ ->[('Scer', 943)] ] 0~120: Scer.....: tggggggttgagttaaacctatactattggaaaccaaaaatcggcagagaattaaggcaaatcaattaaaattccttttctctctacctttgctaatattaaaaaccatagttgtaaagg consensus: ************************************************************************************************************************ 120~240: Scer.....: gtacttaatgctatattcctgttaagtttcctatttcaccttgttttttccaattcttaccaatttgaagactatgtttttaaacacccaatcattttccacccacacatatattaccct consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: ttttttgggtgaagagaagtagtattttgtttttcatgggagtggaagtcctttcaaaactaatccgagcagtagtgctgtctaggcggagattattgaaagtcggcattggctgcagct consensus: ************************************************************************************************************************ 360~480: Scer.....: agcgttttgtttttggtactacctgtcaaacccggcgtctgcctagattgcgcggagggtacgttgaaacttttgcctttccacgtcagtttataatatcaaaagcagcaatatacacat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD 480~600: Scer.....: ttaatggtttgcccttagtgactattagggcgttttggtgaaaagaaagagtcgctcaaagaaatcaatataaccATGGCTAAATTTTTGAAAGCAGGTAAAGTTGGTACGTAAATTTAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============= 600~720: Scer.....: CAGAGCAAACGCTCTAATTAAGATATCGAATAAAAGGGGACTTTCAGGTGCATAAGATGGGAAATTGTACAATCTGAGGGACAAACAATATGGAAAGCAGTACATGATTGTATTGTCATT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: GTAGGAGGTACCAATTGTGCCAGTAAAAAAGAGAGGGCCCGGGGAGCACCACATTCACGACCAATCGTGTCGATCTGCAAAAAAGGCACATGGAAAATGTAATTTATCAGTGTTCAACAC consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: TGAGTTGAACAGATAGCTATCTAATCAATGTTAACTTTCCAGGGAACAAAAAGCTAAATCCACTTCTCTTTTATTTCAAAATATCATTAGAAATAGAAAAATTTACTAACAAATTTTCGT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: ATTATCGTAGCTGTCGTTGTTCGTGGTCGTTACGCTGGTAAGAAGGTTGTGATCGTTAAGCCACACGATGAGGGTTCTAAATCTCATCCATTCGGTCACGCTTTGGTTGCCGGTATTGAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ========>= 1080~1200: Scer.....: AGGTACCCATCAAAGGTCACCAAGAAGCACGGTGCCAAGAAGGTCGCTAAGAGAACTAAAATCAAGCCATTCATCAAAGTCGTCAACTACAACCACTTATTGCCAACCAGATACACCTTG consensus: ************************************************************************************************************************ 1200~1320: Scer.....: GATGTTGAAGCTTTCAAGAGCGTTGTATCTACAGAGACTTTTGAACAACCATCCCAACGTGAAGAAGCCAAGAAGGTTGTAAAGAAGGCATTTGAAGAAAGACATCAAGCTGGTAAAAAC consensus: ************************************************************************************************************************ 1320~1440: Scer.....: CAATGGTTCTTCTCCAAGTTGAGATTCTAAgaagcttttttccgaaacctaacttttttctgtgtactattattattttcataatgcagtttatccttcacataattaaaaattcatatt consensus: ************************************************************************************************************************ 1440~1560: Scer.....: gtataaactaaaacaaacactaccactaaatatttggccatctatctgccatattggtcgtaacacaaaatgcccaatggagcctggtaagttccttattatttaaccctaagaacttta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1560~1680: Scer.....: ttttgatcattgcgtgcaaaatgatattgtttacaagttttttttttccagcttctttacatataaaagggaaggattttgaaattataaatggcatctcaaatcgtctctatatctttt consensus: ************************************************************************************************************************ 1680~1800: Scer.....: gttaattggattttttaaagggtcaggaagttttttcctttttatatgatgaatatgagtgcatttggctcgagttgctgtttggcttttgccaaatcagtaacggtgtggaaaaactca consensus: ************************************************************************************************************************ 1800~1920: Scer.....: agctacctttttttacttttatctgaccttttaacttccccgtagaaaatcttagtaatccttcttacattgtatcgtagcgctgcatatataatgcgtaaaattttctctttttaaaag consensus: ************************************************************************************************************************ 1920~2040: Scer.....: atgttagtacgttgggtttggcttgttcatttttattatcctttatttacttgtaaaaaaacgaaagtgacgaagttcatgctaagattgaagaaaattatttatcgtatactttgcagg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2040~2107: Scer.....: acaagagacacggaagcgacagaaagacagggagtactatcaccatccataatactggagtaacatt consensus: ******************************************************************* { alias......: ['RPL37B'] chromosome.: 4 description: 60S ribosomal protein L37B (L43) (YL35) end........: 1450856 exons......: [(1, 7), (397, 656)] gene.......: RPL37B introns....: [(8, 396)] length.....: 656 name.......: YDR500C plength....: 218 start......: 1450201 tdist......: 81073 type.......: ORF up.........: 0 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 506)] ->[('Scer', 1091)] ] [ ->[('Scer', 855)] ->[('Scer', 865)] ] 0~120: Scer.....: aaccaaaattgtgacgattttgtcgtgaaacttctagcgaaaagactaatgaaatcggcaaatattgtgtaaatagtataccaaaaaaaaaaacgcttctatatattgttccccgttgct consensus: ************************************************************************************************************************ 120~240: Scer.....: agtaacgatagaaacggcaaataaggagagaaattaaactttcttgggagaggcagaagtgtttacttattcttctgaaacaaaaacaaacgcgaaaaaaaaattatcgcgtttggatta consensus: ************************************************************************************************************************ 240~360: Scer.....: tcattatttagacattaacacctgtacatatttgtattttaaaagccgaacatttttgggttctatatcagttttttttttcttcaagcactccgtacaccactaatattatcactgaga consensus: ************************************************************************************************************************ 360~480: Scer.....: atcttcctgccacttgcgggaaggatgagattggaaacatggctggaatagtaagcataggttactatagaaagcggtaacaaaaagcactactatgtgtagataaagaacaaagaggta consensus: ************************************************************************************************************************ 480~600: Scer.....: aacgaatatataagtaaagATGGGTAGTATGTACAGGAATTATTAATTGATGAGTCAACGTTCAATCACATCCGGTCTGATTTAGAGGATTACATGAGAAAGAAGCACTGAAAAAATTTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================================================================================= 600~720: Scer.....: CCACCAGGAGAGGCCAGGTAAACTAAGACCTACGTTATTCACTATGCCAAAAGATTTAAAAATATAGAATGATGAATGTTGCCAGAGCCATTGATGATAAGAAATTGCACATAACGGATG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: CATAAAGAGCGAATAAAAAGATTTGAGTGTCAATACAAAAAGGTGAGAAGAAATAGTGTAAGACAGCAACACACATCTAGACCGCCAATGAAGTTGTTCTGAATCCAGCAGTAGAGTTTA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: TTTAGTTCAAAGTTTTACTAACGATAATTAACTTTTATGTTTTCATTTTAAACAGAGGGTACTCCTTCATTCGGTAAGCGTCACAACAAATCTCACACCTTGTGTAACAGATGTGGTCGT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB BBBBBBB known....: =====================================================>= 960~1080: Scer.....: CGTTCTTTCCATGTTCAAAAGAAGACCTGTTCCTCTTGTGGTTACCCATCCGCTAAGACTAGATCTCACAACTGGGCTGCCAAGGCAAAGAGAAGACACACTACTGGTACCGGTAGAATG consensus: ************************************************************************************************************************ 1080~1200: Scer.....: AGATATTTGAAGCATGTCTCCAGAAGATTTAAGAACGGTTTCCAAACCGGTTCTGCTAAGGCTACTTCTGCTTAAatttgatattatctataagttttgttctttcctaaaacgaaaata consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1200~1279: Scer.....: atataaattatatatagttaatattaagcattacaaggtttctataaagcgttgacattttccccttttgattgttgcc consensus: ******************************************************************************* { alias......: [] chromosome.: 4 description: Hypothetical ORF end........: 1507364 exons......: [(1, 48), (305, 757)] gene.......: introns....: [(49, 304)] length.....: 757 name.......: YDR535C plength....: 252 start......: 1506608 tdist......: 24565 type.......: ORF up.........: 0 } Scer: 6 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 51)] ->[('Scer', 563)] ->[('Scer', 690)] ->[('Scer', 893)] ->[('Scer', 1235)] ->[('Scer', 1265)] ] [ ->[('Scer', 2106)] ->[('Scer', 2546)] ] 0~120: Scer.....: ggtctaaaactttctatgttctatttttctattttttatttattctaacttgtatgctagaacacgtatacaaaataattattcaaaatcaataaagggcttgtttatatactatgagtg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: tgactactcctgaactgcaattctgaccctctaaggccaagcagcgttgaaggggacaaaattgaagctaaaacatctcacttaagctttctcaatttctctatctacttcctttttgtt consensus: ************************************************************************************************************************ 240~360: Scer.....: acgaatgccccaatgaaagccctatcaaaggtgaaccaaaagtgtttcccttaccgggatctgcactttctcagattactactatcgcgaagcagccaagcgcaatagctgcacctggcg consensus: ************************************************************************************************************************ 360~480: Scer.....: aggattaaccaaccaaaaacggtatatagccgagaaacagtgtacaaccattatttctttctgacgtagtggatggctggacactttccgcttattttagtttcatgcaacgaacagagc consensus: ************************************************************************************************************************ 480~600: Scer.....: cgctcgaacaggcgacgtagcgccgaataccccgcgaaacggagatgctactcaaatgcaggtagcggaggcatcgccgtggggtatgcggtggccgaaaaaggacaaagtcggaccctt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 600~720: Scer.....: catatcagttaaaatgacgcaagttgagtcaaagtgagccaaATGGGCCAAATGCGGTGGAATAGTGGGACAACGGCACTTATTTCGTCCGTACGTCCGTTATGGATGTGTATACTATTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================= 720~840: Scer.....: CATGATTGGCTTACCTCAAAGAAAATGAAACGGATGGTGCCTCCTAGCCTTGGCAATGAGTATCAGTAGTGGTGTTCTGCAGCCCTTTAATTCTATCTTGGCCGCATTCCAGACATATCC consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: CTTATAGTTATGACGTATATGATTGTGGGGCATTGTTTGCCAAGGAAAATGGAGTAAGTTGAATGAAGAATATGGATTAGTGGTTCTAGGTCGCTCGTAATATCAGACTGAAAGACATTA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ========================================================================================================>= 960~1080: Scer.....: TCTTTGCAAAGGTTGTAAAAGGAGTATTTCAGAATCATTGCTGATTCACACGCGAGACCACATTAGTAAATTTTCTACTCTCGGGCTGAATTCCTCGGCGAAGCTTTGCCTTGCCATTTT consensus: ************************************************************************************************************************ 1080~1200: Scer.....: AGGTGAGAATACGTATTTGCGGTATCATATTGTTTTTCTTCTCTTCCTTAACTCATTTAGAAAGTTCGATAGTGAACAAAGCGCTACACAAATATTTGATCATGGCAAAGTTACCGCGCC consensus: ************************************************************************************************************************ 1200~1320: Scer.....: AATCGCCCTGCGCATTGTAGTCGCCTGCTCCTTCAGTTCGTCCGCTGGTTGCGGAATATTTGAATGTCAGTTTTCAACATTGAAACATCAGATAATGTTGGTATCGTGTTTAAATGATGG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD 1320~1440: Scer.....: ACGCATCTACGTCACCTTAAGTGCGTTTTTGCCTGTGAGATTTTTATTTCATTGTGTCCACTTGCTATTGTCTGGTTGAtattccgatgtttgtcgagtttttttatttgctctctgctt consensus: ************************************************************************************************************************ 1440~1560: Scer.....: tcatttttctgcacttctggcacatggtctagcctttcttagtccagaagcaactgtcaccattgaataacgttgcacttcaacctgtccgtttatccaactgtttatatcggtagaaat consensus: ************************************************************************************************************************ 1560~1680: Scer.....: aagggtataagaataaattggctggtcaattgatcgatgaaattatcgagcttttttttttactgcatgatccctgtcttctgaggctgtgtaacttttttactgcctaagaactctcgg consensus: ************************************************************************************************************************ 1680~1800: Scer.....: acccttctttggtgttgcctcagaaatagtatggtgtattagcaccataataaaaatttttacaaaagccactattatcctcactcaccgatgaatgaacatatatgacctccaagatat consensus: ************************************************************************************************************************ 1800~1920: Scer.....: tcgatcttactgaatggggtagactttataagcggttgccgattagcttagaagaacaattcctttttctttccatttggtattgtacttttctaatgaacttggttagttctgctttat consensus: ************************************************************************************************************************ 1920~2040: Scer.....: cttttacacctggaaacacaggccatagcacatgtcatgatttccgattttatttcttttgattctttcgtaatctgcaatttcattgatccatagcaaaggaaactctaacgcaataag consensus: ************************************************************************************************************************ 2040~2160: Scer.....: aagaaaattatgtttgtacaatagagttaaatacgctgctattttcgtcagaataaggttaatgattattaactcttaaaaagtcgatttttgatgcatcaagaaggtaaattacccaca consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 2160~2280: Scer.....: aatttttagccgactgtgtattttcatatcgcttcgtgctattttatcttatcgattatttggtagtcaatgaagaaagattatttggtagccaatggagaaagattatttggtagccaa consensus: ************************************************************************************************************************ 2280~2400: Scer.....: tggagaaaaattatttggtagtcaatggagaaacattattttaatccttatatttccattaaagtgcaacactggaagaattgatacttctatggtacataatttgttaacgatcgttaa consensus: ************************************************************************************************************************ 2400~2520: Scer.....: tctgtgccatcttcttcccatatgttcttaaaatattcgtgatcgctttgaacttattgggcagtatttttttactgattatttaatcatcaagaacttttctataagttttgaaaggaa consensus: ************************************************************************************************************************ 2520~2640: Scer.....: aaaaagaggagcaattgtggaaaaaagactaacaaatggaacagtattaggatctcacattaatcggtttatgcatcgctatttctaattgatactttcaggaaaaacgtattttattat consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 2640~2760: Scer.....: aaaatgttattggccagacgacagtgatcgcgctgagcactttttcgagtatcgggtttactgttttgatggtcattaccatgttgacaattaccagataaacgaaataagcagtgaatg consensus: ************************************************************************************************************************ 2760~2880: Scer.....: gtcgccaattacaatcagagtttaaacaacccaccaaaacttccatttttaactatgccgtgcaccctgttccgcaccctgtttgttccaaaccgcgctgtcgcacatttggcataatgt consensus: ************************************************************************************************************************ 2880~3000: Scer.....: aatgacagacacctcagggctcaatacgcgagttctaggaaagggtgcaaaaaaatgaatatctaatataatatgacactcgtataccatttttgaagtgaagtttttgcactatttaaa consensus: ************************************************************************************************************************ 3000~3104: Scer.....: ctaatgattatctaacttttctatattcctaatgccgtgtttattttcagaaagtccttttgttcgcctgaataataatagtaataacaatacaatacccgaaa consensus: ******************************************************************************************************** { alias......: [] chromosome.: 5 description: Hypothetical ORF end........: 5114 exons......: [(1, 513), (793, 930)] gene.......: introns....: [(514, 792)] length.....: 930 name.......: YEL076C-A plength....: 310 start......: 4185 tdist......: 4185 type.......: ORF up.........: 0 } Scer: 4 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 276), ('Scer', 280)] ->[('Scer', 162)] ->[('Scer', 513)] ] [ ->[('Scer', 697)] ] 0~120: Scer.....: ATGCAAGCAAGTTTACCTGGCGAAAAGAAAGTCGACACAGAGCGGCTGAAGCGTGATCTATGCCCACGTAAACCCATTGAGATAAAGTACTTTTCACAGATATGTAACGATATGATGAAC consensus: ************************************************************************************************************************ 120~240: Scer.....: AAAAAGGACCGATTGGGTGATATTTTGCATATTATCTTGCGAGCATGTGCACTCAATTTCGGGGCGGGTCCCCGTGGTGGCGCTGGTGACGAAGAGGATCGATCTATTACGAATGAAGAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: CCCATTATTCCCTCTGTGGACGAGCATGGCCTGAAAGTATGTAAGTTGCGCAGTCCTAACACTCCACGAAGACTCAGAAAAACACTAGATGCCGTGAAAGCTTTATTGGTGTCGTCTTGT consensus: ************************************************************************************************************************ Scer_spli: DDDDDDDDDD 360~480: Scer.....: GCTTGTACCGCAAGGGATTTAGATATATTTGATGACAACAACGGCGTTGCAATGTGGAAATGGATCAAAATTCTGTACCACGAAGTAGCGCAGGAAACCACGCTGAAGGACTCTTATAGA consensus: ************************************************************************************************************************ 480~600: Scer.....: ATAACTTTGGTACCTTCTTCTGATGGTATATCAGTATGTGGAAAACTTTGGGGAGAGTTGAACAACTGCTTCCATATGCCAGCCTCATTTTGCGTAATCGAGAAGTTTTGTTCAGAGAAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >====================================================================================== 600~720: Scer.....: CGAAGCGAGGAATTGACGAGTATCTGGAAAACGATTCTTTTCTTCAAATGATACCTGTTAAATATCGTGAAATTGTGCTGCCCAAGTTGAGAAGAGATACTAACAAAATGACCGCGGCTC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 720~840: Scer.....: TTAAAAATAAAGTCGCTGTTGCAATTGACGAGCTTACGGTGCCACTTATGTGGATGATCCATTTTGCCGTAGGATACCCTTACCGTTATCCAGAGCTTCAGCTACTCGCTTTTGCCGGTC consensus: ************************************************************************************************************************ known....: ======================================================================>= 840~960: Scer.....: CTCAGCGCAACGTATACGTCGATGATACAACAAGACGCATCCAACTGTACACTGATTACAACAAGAACGGTTCATCGGAGCCTCGACTAAagacgcttgacggactcacttcagattacg consensus: ************************************************************************************************************************ 960~1017: Scer.....: tgttttattttgtcactgtgctaaggcaaatgcaaatatgtgcgcttggtaacagtt consensus: ********************************************************* { alias......: ['PMI40', 'PMI'] chromosome.: 5 description: mannose-6-phosphate isomerase end........: 159117 exons......: [(1, 31), (125, 1383)] gene.......: PMI40 introns....: [(32, 124)] length.....: 1383 name.......: YER003C plength....: 461 start......: 157735 tdist......: 157735 type.......: ORF up.........: 0 } Scer: 3 donors and 2 branches Spar: 3 donors and 2 branches Smik: 4 donors and 1 branches Sbay: 4 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 517), ('Spar', 517), ('Smik', 517), ('Sbay', 517)] ->[('Scer', 1600), ('Scer', 1604), ('Smik', 1600), ('Sbay', 1600)] ->[('Spar', 484), ('Smik', 484)] ->[('Sbay', 231)] ->[('Sbay', 411)] ->[('Smik', 153)] ->[('Spar', 710)] ] [ ->[('Scer', 585), ('Scer', 581), ('Spar', 585), ('Spar', 581), ('Smik', 581), ('Sbay', 581)] ->[('Sbay', 1525)] ] 0~120: Scer.....: cgttgcttgtgctcttctatataatccatcctatctttctcatcagtaggaggtcgatcttatgcaaagttcgccaccaacagctgc-a-gttacatc--atatcgcggaa-actccgca Spar.....: tgttacttgtactcttctatgcggtccatcctttcttcctcacatgt---gtgccgatcctctgctaagttcgccaccaacagctgc-attttacatt--atatcgcgtaa-accccgca Smik.....: cgttgaacttactctttcaaatggttttttgtatactcctaatcctt---aagccgatcttatgccaagctcgccaccaacagctgctgttctacattgggtatcgcgtaaccccccgca 120~240: Scer.....: ctggcatcgtgccgcgcgacaagcgcaa---ggatgagaatcatgaaaaccttg-ctacaacaagatgccaataaagtcgttccct-gatatagctagtac-tttgcgggagtaatttgt Spar.....: ttgatatcgtgccgcgcgacaagcgtaa---gaatatttgccatggaacgctta-ttacaagaagatgccagtaatgacgttctatgggcaggtcttgtacttttacaagagcactttgt Smik.....: ttgttatcgtcccacgcgacaagcataaaataagtacgtaacatggcatcttcgcctacaaaatgatcttagcaaggacattcctt-ggtagatc-agtaatttctcaagagtgcaatat Sbay.....: ---------------------accgaa----cgaaccttgccatcgtgcattccgct-caagaagatgccagcgacgagaatctgc-cgcaaatctggtaatcttacaggagtatgccac consensus: * * * *** * * *** * *** * * * ** * * *** * * *** Smik_spli: DDDDDD Sbay_spli: DDDDDD 240~360: Scer.....: tattctgct-------ttctttt-gcact-ttgatcatgccaagtctcgtggtgcactatccatttcgtgctgcttggtta-ttgtagcaattttttgtcgcgtccgtgtc-ctttttcg Spar.....: tagtctactacctcccttcttttaagaat-ctgatcatcctttgtcttgaagtacagcacccatatcatgctgcttaattgtttgtagta--tttttgtcgcgtccgtgtc-ttttttcg Smik.....: tagtctgct------cttcttcttgtaatactggtcgttccagctctggtcgtcccgcacccattgcttggtaatgg-----ttgtaata-ttttttatcgcgtctctctctttttttca Sbay.....: tggtgcatt----tccctctttttcagggcttaagcttgct-tgtttcagagcacactacttgctacttcgtgg--------ttgcgata--attttgtcgcgtccgtctgtttttttca consensus: * * * **** * * * * * * * * * * * * * *** * **** ******* * * ****** 360~480: Scer.....: ccgcgatttacgta-tt-taaatatacacgtcgcaatcttagtatatttctgtataaaatgtttgtttc-ttgtaatcattcaacactaaacacgtaaagaacatcagaccagaaaattt Spar.....: ccgcggtttacgtattt-tatatatacacgtcgcaattttagtatatttctgcat-acatgtttgtttcgttgttgtcgttcaacattgaacacgtaaagaacatcacaccaggaaa--t Smik.....: ccgcggtttacatatttatatatacacacgtagcaatttcagtatattttcgcat-gcatgattgtcaggttgtcgccaagagaacttgaacaggtaaagaaattcacataaagacaatc Sbay.....: ccgcagtttacgtattt--------acacgtagtagttt---gatataattgcat-gtacg--cgtcctgttgctttcactatccatagaacctggcaaacactccacaccagatta-tc consensus: **** ***** ** ** ****** * * * * **** * ** * * ** *** * *** * ** * ** * * * Sbay_spli: DDDDDDD 480~600: total....: ====== Scer.....: taaaacATGTCCAACAAGCTGTTCAGGTTAGATGCAGGTATGTGCCATTTTTCGTCAAATATTTTGAATACTTTGAGTATTTTTTTTTTTTTTTTTTGGTACACTAACTAACGCGTACGA Spar.....: taaagcatgtccaataagttatttagactagacgcaggtatgtgccattcttcctcaaatatttctaa--------------tcattctttttttttggtacactaactaacgcgtacga Smik.....: caaagcatgtccaacaagttattcagattagacgcaggtatgtattatttttctcagaaagctccgaa-----------------tcttttttctcagatttactaaccaacgcgcacga Sbay.....: tcgaacatgtccaacaaattattcaggctagacgcaggtacgtattactttttctctaacttttta-------------------actctttcttctgctttactaacaaacgctcacga consensus: * ********* ** * ** ** **** ******* ** * * ** ** * *** * * * ****** ***** **** Scer_spli: DDDDDD BBBBBBBBBBB Spar_spli: DDDDDD DDDDDD BBBBBBBBBBB Smik_spli: DDDDDD DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >================================================================================== 600~720: Scer.....: CTCTATGTAGGCTACCAACAATACGACTGGGGTAAAATCGGCTCTTCTTCAGCTGTCGCTCAATTTGCTGCCCATTCTGACCCCTCTGTTCAAATTGAACAAGATAAACCATATGCAGAG Spar.....: ctctatataggctaccaacaatacgattggggtaagatcggctcctcttcagctgttgctcaattcgctgcccactctgacccttctgttcaaattgaacaagacaaaccgtatgcagag Smik.....: ctctatataggctaccaacaatacgactggggtaagatcggctcgtcttcagctgttgctcaatttgctgcgcactccgatccttcttttcaaattgaacaagacaaaccatatgcagaa Sbay.....: tttcatataggctaccaacaatacgactggggaaagatcggctcctcctctgccgttgctcaattcgcgtctcattccgacccttctgtccagattgagcaagacaagccatatgcggaa consensus: * ** ******************* ***** ** ******** ** ** ** ** ******** ** * ** ** ** ** *** * ** ***** ***** ** ** ***** ** Spar_spli: DDDDDD known....: ========>= 720~840: Scer.....: TTATGGATGGGTACCCACAGCAAGATGCCTTCCTACAACCATGAGTCTAAGGAATCCCTGAGAGATATCATCTCCAAGAACCCCTCTGCCATGTTAGGTAAGGACATTATTGATAAGTTC Spar.....: ctatggATGGGTACCCACAGCAAGATGCCATCCTACAACCATGAGTCTAAGGAATCCTTGAGAGATATCATCTCTAAAAACCCTTCTACCATGTTAGGCAAGGATATCATTGATAAGTTC Smik.....: ctatggATGGGTACTCACAGTAAGATGCCATCTTACAATCATGAGTCTAAGGAATCCCTGAGAGATATCATTTCCAAGGACCCCTCTGCTATGTTAGGTAAGGACATAATTGATAAGTTC Sbay.....: ctatggATGGGTACTCACAGCAAGATGCCTTCTTACAATCACGAGTCCAAGGAATCCCTGATAGATATCATCTCCAAGGACCCTTCTACCATGTTGGGTAAGGACATCATTGACAAGTTC consensus: ************* ***** ******** ** ***** ** ***** ********* *** ********* ** ** **** *** * ***** ** ***** ** ***** ****** 840~960: Scer.....: CACGCCACAAATGAATTGCCCTTCCTTTTCAAAGTTTTGTCCATTGAAAAAGTCTTGTCTATTCAAGCACATCCCGACAAAGCCTTGGGTAAAATATTGCACGCTCAAGATCCTAAGAAC Spar.....: CATGCCACGAATGAGTTGCCCTTCCTTTTCAAAGTTTTGTCCATTGGAAAAGTCTTGTCCATTCAAGCGCATCCCGACAAGGCTTTGGGTAAAACATTGCACGCTCAGGATCCTAAGAAC Smik.....: CATGCCACGAATGAGTTGCCCTTTCTTTTCAAAGTCTTGTCCATTGGAAAAGTCTTGTCCATTCAAGCTCATCCCGACAAGGCTTTAGCTAAAACATTACATGCTCAAGATCCTAAGAAC Sbay.....: CATGCCACAAACGAACTGCCTTTCCTTTTTAAAGTCTTGTCCATTGGTAAAGTCTTGTCTATCCAGGCTCATCCCGATAAGACCTTGGGTAAAACACTGCACGCTCAAGACCCCAAAAAC consensus: ** ***** ** ** **** ** ***** ***** ********** *********** ** ** ** ******** ** * ** * ***** * * ** ***** ** ** ** *** 960~1080: Scer.....: TATCCTGATGATAATCACAAACCTGAAATGGCCATCGCTGTGACTGACTTTGAAGGTTTCTGCGGGTTCAAACCTTTGCAAGAGATTGCAGATGAATTGAAACGTATTCCTGAATTACGC Spar.....: TATCCTGACGATAATCACAAGCCTGAAATGGCTATCGCTGTCACTGACTTTGAAGGTTTTTGTGGGTTCAAGCCTTTGCAAGAGATTGCAGATGAGTTGAAACGTATCCCAGAATTGCGC Smik.....: TATCCTGATGATAACCATAAACCTGAAATGGCCATTGCTGTTACTGACTTCGAAGGATTTTGCGGGTTTAAGCCATTGCAAGAAATCGCAGATGAGTTGAAACGTATCCCTGAATTACGC Sbay.....: TATCCTGATGACAACCATAAGCCAGAAATGGCCATCGCCGTCACTGACTTTGAAGGGTTCTGCGGGTTCAAACCATTGCAAGAAATTGCTGATGAATTAAAACGCATTCCTGAATTACAC consensus: ******** ** ** ** ** ** ******** ** ** ** ******** ***** ** ** ***** ** ** ******** ** ** ***** ** ***** ** ** ***** * * 1080~1200: Scer.....: AACATTGTTGGTGAAGAAACTTCCAGGAATTTTATTGAGAACATTCAACCTTCTGCTCAGAAAGGTTCCCCAGAAGATGAGCAAAACAAAAAGCTATTGCAAGCTGTTTTCAGCAGGGTC Spar.....: AACATTGTTGGTGAAGAAACTTCCAGGAATTTCATTGATAACGTTCAACCCTCTGCTCAGAAAGGTTCACCAGAGGATGAAGAAAACAAAAAGCTATTGCAAGCTGTTTTCAGTAAAGTC Smik.....: AACATTGTTGGTGAAGAAACTTCCCAGAATTTTGTTGATAGCATTCAACCCTCCGCTAAGAAAGGTTCACCAGAAGATGAACAGAACAAGAGACTCTTGCAAGCTGTTTTTAGTAAAGTC Sbay.....: AAAATCGTGGGTGATGAAACTTCTCAAGATTTTATCAATGGTATTGACACGTCTGCTCAGAAGGGTTCTCCAGAAGACGAGCAAAACAAAAAGCTTTTGCAAGCTGTTTTCAGTAAAGTA consensus: ** ** ** ***** ******** **** * * ** * * ** *** **** ***** ***** ** ** * ***** * ** ************** ** * ** 1200~1320: Scer.....: ATGAACGCTTCGGATGACAAAATCAAGATTCAAGCTCGCTCCTTGGTCGAAAGATCAAAGAATTCTCCATCAGACTTTAACAAACCTGATTTACCAGAATTAATTCAAAGACTGAATAAA Spar.....: ATGAACGCTTCTGATGATGAAATCAAGACTCAAGCTCGCTCCTTGGTCGAAAGATCAAAGAATTCTCCATCAGATTTTAACAAAACAGATTTACCAGAACTAATTCAAAGACTAAATGAA Smik.....: ATGAACGCTTCCGACGACGAAGTTAAGACTCAAGCCCGCTCTTTGGTCGAGAGATCGAAAAAATCTCCCTCTGACTTTAACAAATCAGACTTACCGGAATTAATTAGAAGACTTAATGAA Sbay.....: ATGAACGCTTCTGACGACGAAATCAAGATTCAGGCCCGCTCATTGGTTGAAAGATCGAGAAATTCACCTTCTGACTTCAACAAGCCTGATTTACCAGAGTTAATTCAAAGACTAAACAAG consensus: *********** ** ** ** * **** *** ** ***** ***** ** ***** * ** ** ** ** ** ** ***** * ** ***** ** ***** ****** ** * 1320~1440: Scer.....: CAGTTCCCTGATGACGTGGGTTTGTTTTGTGGATGTTTATTGTTGAATCACTGCAGATTGAATGCTGGTGAAGCCATCTTTTTAAGAGCTAAGGATCCTCACGCCTATATAAGCGGTGAT Spar.....: CAGTTCCCTGATGACGTGGGTTTGTTTTGTGGATGTTTGTTGTTGAATCATTGCAGATTGAATGCTGGTGAAGCCATCTTTTTAAGAGCCAAAGATCCTCATGCCTATATTAGCGGTGAT Smik.....: CAGTTTCCCGATGACGTCGGTTTGTTTTGTGGATGTTTGTTGTTAAATCATTGCAGATTGAACGCCGGTGAAGCCATCTTTCTAAGAGCCAAGGATCCTCATGCTTATATAAGCGGCGAT Sbay.....: CAATTCCCCGATGATGTAGGTCTATTCTGTGGGTGTTTATTGTTGAACCATTGCAGATTGAAAGCAGGTGAAGCTATTTTCCTAAGAGCCAAGGATCCTCACGCCTATATAAGTGGTGAT consensus: ** ** ** ***** ** *** * ** ***** ***** ***** ** ** *********** ** ******** ** ** ******* ** ******** ** ***** ** ** *** 1440~1560: Scer.....: ATTATGGAATGTATGGCTGCTTCTGACAACGTAGTTAGAGCAGGCTTCACTCCAAAATTCAAGGATGTTAAAAACTTGGTCTCCATGTTAACCTATACATATGATCCTGTGGAAAAGCAA Spar.....: ATTATAGAATGTATGGCTGCTTCCGACAACGTAGTTAGAGCAGGCTTCACTCCAAAATTCAAGGATGTCAAAAACTTGGTCTCCATGTTAACCTATACATATGATCCTGTGGACAAGCAA Smik.....: ATCATGGAATGTATGGCTGCTTCCGACAATGTTGTTAGAGCGGGCTTCACTCCAAAGTTCAAGGACGTTAAAAACTTAGTCTCCATGTTGACTTATACATATGATCCTGTGGAAAAGCAA Sbay.....: ATTATGGAATGTATGGCCGCTTCCGACAACGTGGTTAGAGCAGGCTTCACTCCAAAGTTCAAAGACGTTAAGAACTTGGTTTCCATGCTAACCTACACCTATGATCCTGTGGAAAAGCAA consensus: ** ** *********** ***** ***** ** ******** ************** ***** ** ** ** ***** ** ****** * ** ** ** ************** ****** Sbay_spli: BBBBBBB 1560~1680: total....: ========== Scer.....: AAAATGCAGCCTTTAAAGTTCGACAGGTCCTCTGGTAACGGTAAGTCAGTTTTATATAACCCTCCAATCGAAGAATTTGCTGTATTGGAGACTACTTTTGATGAGAAACTTGGTCAAAGG Spar.....: AAAATGCAGCCTTTAAAGTTCGATAGATCTTCTGGTAATGGGAAGTCAATATTATATAACCCTCCAATCGAAGAATTTGCTGTATTGGAAACTACTTTTGATGAAAAACTTGGTCAAAGG Smik.....: AAAATGCAGCCTTTAAAATTTGACAGATCTTCAGGCGATGGTAAGTCGGTATTATATAACCCTCCAATCGAGGAATTTGCTGTATTAGAAACTACTTTTGATGAAAAACTTGGTCAAAGA Sbay.....: AAAATGCAACCTTTAAAATTCGACAGATCTTCCGGCTGTGGTAAGTCTGTTTTGTATAACCCTCCAATCGAAGAGTTCGCCGTCTTGGAAACTACTTTTGATGGCAAGCTTGGTCAAAGA consensus: ******** ******** ** ** ** ** ** ** ** ***** * ** ***************** ** ** ** ** ** ** ************* ** *********** Scer_spli: DDDDDDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1680~1800: Scer.....: CATTTTGAAGGTGTTGATGGTCCAAGTATCTTAATCACTACAAAAGGTAATGGTTACATTAAAGCAGATGGCCAAAAATTGAAAGCTGAACCCGGTTTTGTCTTTTTCATCGCTCCACAT Spar.....: CATTTTGAAGGCGTTGATGGTCCAAGCATCTTGATCACTACAAAGGGTAATGGTTACATCAAAGCAGATGGCCAAAAATTAAAGGCTGAACCCGGCTTTGTCTTTTTCATTGCTCCACAT Smik.....: CACTTTGAATGTGTTGATGGTCCAAGTATCTTGATCACTACAAAGGGTAATGGTTACATCAAGGCAGATGGCCAAAAATTAAAGGCGGAACCAGGCTTTGTCTTTTTCATTGCTCCCCAT Sbay.....: CATTTTGAAGGTGTTGACGGCCCAAGTATCTTGATCACTACAAAGGGTAATGGTTACATCAAGGCTGATGGCCAAAAGTTGAAAGCCGAACCTGGCTTTGTATTTTTTATTGCTCCACAT consensus: ** ****** * ***** ** ***** ***** *********** ************** ** ** *********** ** ** ** ***** ** ***** ***** ** ***** *** 1800~1920: Scer.....: TTGCCTGTTGATTTGGAAGCTGAAGATGAGGCGTTTACTACCTATAGAGCCTTTGTGGAACCAAATTAGctttcttt------ctatttcttaatttt----------ctta---tatct Spar.....: TTGCCTGTTGATTTGGAAGCTGAAGATGAGGCTTTTACTTCTTATAGAGCCTTTGTGGAGCCAAATTAGctcactttt-cccatttttcctttatttttaactctttattta---tattt Smik.....: TTACCTGTTGATTTGGAAGCTGAAGATAAGGCTTTTACTACATATAGAGCCTTTGTGGAACCCAATTAAttcagttct--cggtttattcctaatatta---tcttccctta---tattt Sbay.....: TTGCCTGTTGATTTAGAAGCAGAAGATGAAGCTTTTACCACTTACAGAGCCTTTGTCGAACCAAATTAGtgtacccttttctatttttgcctttctttcttacttttatttaccgtatat consensus: ** *********** ***** ****** * ** ***** * ** *********** ** ** ***** * * * * ** *** *** * 1920~2040: Scer.....: ataatagag-aaaatattatacttatttatttgaagtctactttatttcacag-ttttctatttgcttctcacgttct-ataatatagtggaatggaaatatcaaacataatttgctgtt Spar.....: ataatagag--aaatattatattta-ttatttgaactctgcttcatgttacagtttttctatttgtttc-cacgttctcattatagaataaaatagagatgtcaaacatatcttaccgct Smik.....: atataaaga-gaataactatattta-ctatttgaactctgcttcatttctcaa-ctttttacttgctca-cccgcgctactaggacaaagaaatagatttaccaaacaaaagttactcct Sbay.....: ataaaaaagaaaaatactatattta-ttatttgttttctactttattttgctgcctttct-cttgtttt-gttactctactaa-atggtgaaatagatataatgcagaagaactgctct- consensus: *** * ** * **** *** ****** *** *** ** * * *** * *** * ** * * *** ** * * * * * 2040~2133: Scer.....: c-tctaaaacac-ttgatat--tgatgcataaaaacatatatagatacatatataaatattacgtggtaat-caattggtagttgccattggt Spar.....: catctaatatac-ttgatat--tgatgcatgaaactacat--------atatatatatattacgtgagatt-tggttggtagttgttattgg- Smik.....: --ttcgacatat-ttgatat--taatgcataaaactac----------agataagaaca-tacataaaattataattggtagttgcctttagt Sbay.....: --tctaatatactttgattttgtgatgcatataaat-------------tacataaaca-tatgtgagattcttaattgtaattcgc------ consensus: * * * * ***** * * ****** ** * * * * ** * * * * *** ** { alias......: [] chromosome.: 5 description: Hypothetical ORF end........: 166884 exons......: [(1, 11), (115, 649)] gene.......: introns....: [(12, 114)] length.....: 649 name.......: YER007C-A plength....: 216 start......: 166236 tdist......: 166236 type.......: ORF up.........: 0 } Scer: 3 donors and 1 branches Spar: 4 donors and 1 branches Smik: 5 donors and 3 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 556), ('Spar', 556), ('Smik', 556), ('Sbay', 556)] ->[('Scer', 1007), ('Spar', 1007), ('Smik', 1007), ('Sbay', 1007)] ->[('Scer', 585), ('Spar', 585)] ->[('Sbay', 1039)] ->[('Sbay', 1756)] ->[('Sbay', 1834)] ->[('Smik', 596)] ->[('Smik', 892)] ->[('Smik', 1063)] ->[('Spar', 1545)] ] [ ->[('Scer', 1096), ('Spar', 1096), ('Smik', 1096), ('Sbay', 1096)] ->[('Smik', 161)] ->[('Smik', 1423)] ] 0~120: Scer.....: -----gtaacctctgcattgtcgcttcatattacatatttagac--taattaagtaaatattttgataaatttc--aatttca-aatatcgtgtaaaatgatatatt-------agtttt Spar.....: -aaaattgaactgtacattgccgtttcatattacatacttagactataattcaatgaata-tttgataaattgc--aatctcgctatatcgtgtagaatgatatgtt---cttgagtttt Smik.....: aaaatatggggtctacattaccatt--atctcacttttataaactacaattcaatagaatattagatgaattcc--aacagtatcatatcgtggatagtgatataaaa-aattcggtttt Sbay.....: -------aataatatcatctctttataataatatatatttagactttaacgtaaagaata-ttaatcaagttctcaagttctcccacatcgtgcggaatgacctgaaatttttcaatctt consensus: *** ** * * ** ** ** * * ** * ** * * ****** * *** * * ** 120~240: Scer.....: cgaa--tttttttttctgaatataaaaggaacagaatat-tagttagcttcattgtccaattactattgttacttacgtttaatgcattttcttttctttcacttccttccttaatactc Spar.....: cgaa---gtttttttctgaatataaaaggaacataatat-ttgttaacttcattgtccaattcctagtacttcctatatttaatattgtttctttatttcgctttcttcccttaaaactc Smik.....: tgaa---tttttttcctgagtataaatagaacaaactacagaattaacttca---tctgactgtt-ctccttagtatctttggtacagttattttacaattactcttcccttaaatactc Sbay.....: cgatagttttttttttcgattataaaaagaccaacgtagcagactag--------tctaatt--tacttattataatatatattaaggttcttgatttatta-tgtttcctttaaaactc consensus: ** ****** ** ****** ** ** ** ** ** * * * * * * * * * ** * * * * ** **** Smik_spli: BBBBBBB 240~360: Scer.....: catccttatgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgtttttgctggttgaaatttaattataaaccagaccgtctcctcatggtcaat--tcggtgttcgctt Spar.....: catccttatgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgtttttgctggttgaaatttaattataaaccagaccgtctcctcatggtcaat--tctgtgttcgctt Smik.....: catccttatgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgtttttgctggttgaaatttaattataaaccagaccgtctcctcatggtcgtttatcggtgttcgctt Sbay.....: catccttatgcacgggaaatacgcatatcagtgaggattcgtccgagattgtgtttttgctggttgaaatttaattataaaccagaccgtctcctcatggtctattatgggtgttcgctt consensus: ****************************************************************************************************** * * ********** 360~480: Scer.....: ttgaatacttcaagactatgtagggaatttttggaataccttttttc--attaccgatattcattctttcaaagggactgtttatttttctttggaagtaatatcaaaaaatag-gttag Spar.....: ttgaacacttcaggactatgtagggaatttttggaatacttttttttcgtttaccgatattcattctttcaaagaaacttttcatctttctttggaagtgatatcaaaaaatag-gttag Smik.....: ttgaatacttcaagactatgtagggaatttttggaatatttctttt-------acgatatttatgctttcaaagagac------tttttttttggaagtagtatcagagaatag-ggtag Sbay.....: ttgaacacttcaagactatgtagggaatttttggaattttttctca---tttatcggcatttcaactctcaaaagaaccttt--catttttttgggagcaatgtcagaaaatagtggtgg consensus: ***** ****** ************************ * * ** *** ** ***** ** *** ***** ** * *** * ***** * * * 480~600: total....: ====== Scer.....: gg-ataccg--gactgaaacattcaattgagggcccaaccatatttttcttttc-tttttcaccgaattctctaatgtgagttcacgttatagaagctgg-aattgtaagta-atacaga Spar.....: gg-ttacca--gactgaaacattcaattgagggcccaaccatatttttcttttc-tttttcaccgaattctctaatgtgagttcacgttatagaagctgg-aatcgtacgta-gtagcgg Smik.....: gg-ctatca--gactgaaacattcaatcgtaggcccagttatattcttctctt---ttttcaccaagttctttaatgtgagttcatattacggaagttggaaattgtacacatatagtat Sbay.....: ggtctatcagggactgaaacgtgcaattgaaggcccaactatatttttcctctcttttttcaccaaattctttattgtgagttcacattacagttattgggaactataggtaaatagtac consensus: ** ** * ********* * **** * ****** ***** *** * ******** * **** ** ********** *** * *** ** ** * ** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD DDDD Sbay_spli: DDDDDD 600~720: Scer.....: aatggcaactaaaatggtaggcatgag-tgttctccttcttgtgtgtctttcttttcacccgatacagtaaactttgtataggagagttgaccaattacctgacagtgccgtctataaac Spar.....: gatgaccactaaaatggtgggcaggggatgttcttgttcttgcgtgtcttctttcccctctgatatagcaaactttgtataggaggtttgatcaatcaccttgctgtgccgtcaatgaac Smik.....: gatagccattgaaatggtgggctggaggtatcctcagttttatctgcctgtcttttctgctgatata-taaactttgtctaagaattttaatccgtaattaggcagtgcgcttcatagac Sbay.....: agtggtcataatgatcgtaa----aaggtaaacgcatttctgc-tacctgtctcttttcctgctatagtaaaatctatatagaagattcggcccttatctacttagtaccgttaatgaac consensus: * * ** ** * * * * * * ** * * * ** * *** * * * ** * * * * ** * * ** ** Smik_spli: DD 720~840: Scer.....: gagacc---tcaacttcacctcaaaaaccataat-tttatctattg------ataattatcattatggtcattttccactaa---at--------tcatagttaccttac-----tctta Spar.....: gagaac---tcaatgtcatctcaataatcgtaatgcgtattaatta------atgatcaccattgtgagcattttgcactaa---at--------tcatggttaccttac-----tctta Smik.....: aagtac---taaacacaatttcaatcatcttaatacatcataagtacataacacaatctcaattatcgtaatgtaccatcaatacatgaccgctattgtgaacattttgcatcgaattca Sbay.....: ggttacatatatatattaccttagcaacaacaaggcatcggtaccattca--caaatcgtcattatatgcatttttgtcaaa------------atcctggttaccttgttgtactttta consensus: * * * * * * * ** * * ** *** * ** * ** * * * ** * * 840~960: Scer.....: tg----------ctttgtatttgtaggtgtaaaaatgacgaaaaatttaattatctgaaaaattattg-tgtgaaaaa-acttgattttgctataaccttatgtaaaaccat-ataaaag Spar.....: tg----------ccttatatttgaaggtgtaaaagtgacaaaaaatttaatgatatggaaaattaatg-tgtgaaaaattcttaaatctgcagtaacctca-atagaaccat-ataaaaa Smik.....: tggaaaaatccactttttgttcgagggtgtaaaattgacgaaaaaaaatacggtatgaaaaaatatct-aagtaaaaaatctcgattttgcaataaccttt-ctgaaacaat-atagaag Sbay.....: t-------------ttccatttgagggtggaaaattgacaaaaaa-ataataatgtgaaaaattattgcagtgaaaaaataacgatttgatagtgttcttt-gtggaataataatataaa consensus: * ** ** * **** **** **** ***** * * ** **** ** ***** * * * ** * ** ** *** ** Smik_spli: DDDDDD 960~1080: total....: ====== Scer.....: ---acaaagacggtaaactaaaacagcagagaggaaATGTTTAAGAAGTATGTCTAACATGAGAATGAATAT----TGCGTAATTCACT-GGTTTTACCAGGGGTTAG-TGTACACTTTT Spar.....: --tacaaagacgctaaaccaaagcagcaaagagaaaatgtttaagaagtatgtctgacatgagaatgaatct----tgtgtaattcatt-ggttttatgaaggcttag-tgtgcaccttc Smik.....: aatataaagacgttgaaacaaaacagcaaggagaaaatgttcagaaagtatgtttagcacgaagatgaacct----tgttaaactcatt-gattatataaacggttcgttgggcaccttt Sbay.....: ataacaaagacggtaaagcataacaacagtaag-aaatgttcaagaagtatgtctaacatagtagtttctttagtctgcgtacgtcaatgggattcttggaggacatccttgaagctttc consensus: * ******* * ** * * ** ** ** ******* * ******** * ** * * ** * *** * * * * * * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD DDDDDD known....: >======================================================================== 1080~1200: total....: ======= Scer.....: GACTCAGTAAGC-AATTACTAACATCATCATCGATAGATTCACAAGAGAAGATGTCCATTCACGTTCAAAGGTCAAATCTTCAATTCAAAGAACGTTAAAGGCCAAATTGGTCAAGCAGT Spar.....: gactgaataagc-aattactaacgtcatcaccgatagattcacaagagaagatgtccattcacgttcaaaggtcaaatcttcaattcaaagaactttaaaggccaaactggtcaagcagt Smik.....: gagtgaatgaac-atatactaacatcatcaccaatagattcacaaaggaagacgtccattcacgttcaaaagttaaatcttccattcaaagaacattgaaggccaaactcgtgaagcagt Sbay.....: aagcgaataaacaaattactaacatcatcactcatagattcacaagggaagacgtccattcacgttcgaaagtcaaatcttccattcaaagaaccttaaaggccaaattagtcaagcaat consensus: * * * * * * ******* ****** ************ ***** ************** ** ** ******** *********** ** ********* * ** ***** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ===================================>= 1200~1320: Scer.....: ACCCCAAAATAGAAGATGTTATTGATGAATTAATTCCTAAGAAGAGTCAAATCGAGTTGATTAAATGTGAAGATAAGATCCAATTGTATTCCGTCGATGGTGAAGTTCTTTTTTTTCAAA Spar.....: accctaaactagaagatattattgatgagttaattcccaagaagggtcaaattgagttgattaaatgtgaagacaagatccaattgtattccgttgatggtgaagttctttttttccaaa Smik.....: atccaaaactggaagacgttattgacgaactaattcctaaaaaaagtcaaattgagttgatcaaatgtgaagacaaaattcaattgtataccgttgatggtgaagttctttttttccaaa Sbay.....: atccaaaattagaagacgttattgacgaactaattccgaagaagagccaaattgaattgatcaaatgtgaagataagatccagctgtacaccgttgatggcgaagttctttttttccaga consensus: * ** *** * ***** ******* ** ******* ** ** * ***** ** ***** *********** ** ** ** **** **** ***** ************** ** * 1320~1440: Scer.....: AATTCGATGAACTGATTCCAAGCCTGAAATTAGTACACAAATTTCCAGAGGCTTATCCCACTGTTCAGGTTGATAGAGGTGCTATTAAATTCGTTCTCTCAGGTGCTAATATCATGTGCC Spar.....: aattcgatgagctgattccaagtctgaaattggtgcataaatttccagaagcttatccaactgttcaagttgacagaggtgccattaaatttgttctctcaggtgctaatattATGTGCC Smik.....: aattcgatgagctgattccaagcctaaaattagtacataaatttccagaagcttatccgactgttcaggttgatagaggtgccattaaatttgttctctcaggtgctaacattATGTGCC Sbay.....: agttcgatgaattaattccgagtttgaagttagtgcataaattcccagaagcttatccaactgttcaagttgatagaggtgccattaaatttgtcttgtcaggtgccaatattATGTGTC consensus: * ******** * ***** ** * ** ** ** ** ***** ***** ******** ******** ***** ******** ******** ** * ******** ** ** ***** * Smik_spli: BBBBBBB 1440~1560: Scer.....: CTGGCCTAACTTCTGCGGGTGCCGACTTACCACCTGCTCCTGGTTACGAGAAAGGTACGATTGTAGTCATCAATGCCGAAAATAAAGAGAATGCATTGGCTATTGGTGAATTGATGATGG Spar.....: CTGGCTTAACTTCTGCAGGTGCCGACTTGCCACCTGCTCCCGGCTACGAGAAAGGTACGATTGTAGTCATAAATGCCGAAAATAAAGAAAACGCATTGGCTATTGGTGAGTTGATGATGA Smik.....: CTGGTTTAACATCTGCGGGTGCTGACTTGCCATCCGCTCCAGGTTACGAGAAAGGTACGGTTGTAGCTATCAATGCTGAAAATAAAGAAAATGCATTAGCTATTGGTGAACTGATGATGA Sbay.....: CTGGTTTAACTTCAGCGGGGGCCGAATTGCCACCTGCTCCTGGTTATGAGAAAGGTAGAATTGTTGTCATTAATGCTGAAAACAAAGAAAACGCGTTGGCTATTGGTGAACTGATGATGA consensus: **** **** ** ** ** ** ** ** *** * ***** ** ** ********** **** * ** ***** ***** ***** ** ** ** *********** ******** Spar_spli: DDDDDD 1560~1680: Scer.....: GTACTGAAGAAATTAAATCAGTGAACAAAGGTCATTCCATAGAATTGATTCACCATTTGGGCGACCCCTTATGGAACTTCAGCGT-------TGAGTAAcaaacggagcc-gtcaacact Spar.....: GTACTGAAGAAATTAAATCCATAAACAAAGGTCATTCCATAGAATTGATTCACCACTTGGGAGACCCCTTATGGAATTTCAGCGTTGAGTAAtgagtaacagatggagccagtcaacact Smik.....: GTACCGAAGAGATTAAGTCTATAAACAAAGGCCATTCCATAGAACTGATTCACCACCTGGGCGATCCTTTATGGAATTTCAGCGT-------TGAGTAActaataaaaccgttcaatact Sbay.....: GCACCGAAGAAATCAAATCTATAAACAAAGGTCATTCCATAGAATTGATTCACCATTTGGGTGATCCCTTATGGAATTTCAGCAT-------TGAATAAaccatata-ccatttgatatt consensus: * ** ***** ** ** ** * ******** ************ ********** **** ** ** ******** ****** * *** *** * * ** * * * * 1680~1800: Scer.....: at-attactatccatctgc-tacataataaaataaagaaactaagaaaaaattagaataacatccgcttacaatctaaaaggctgtttcctgatttt-taaa-------tatgcaactag Spar.....: ac-tttacaatttacctac-tacataataaaata--------aacaaaaaattacagtagcatctgcttatgatctaaaaggctatttcctgattttctaaa-------tatgctaatag Smik.....: ac-tttaaaatttgcctacttaagtaacaaaata----aactaagaaaatattacactagcat-tgcttataatctgcatggctatttcctaatttc-ggag-------tgttttcataa Sbay.....: acttttacagattacctgcttacataataaaataaaataa-aataagaaaaatacactagcatttgc-tgtagtctgtatgactatttccgagatttaaaagctatcatttctttgataa consensus: * *** ** * ** *** ****** * * ** * ** * ** *** ** * *** * * ** ***** ** * * ** Sbay_spli: DDDDDD 1800~1858: Scer.....: ccaagattaactat-atactgtga---------------------------------- Spar.....: ccgcgattgattataattctgtgaatatggt-agttgttaacattctgtcggctcttg Smik.....: cctcgcttgactagacttctattagtataatgggttgttaatctgttgttgtcatg-- Sbay.....: cgatagctgccgtaggttatatgaatatagtagtgtatgaatgtttttttggctgttg consensus: * * * * * * Sbay_spli: DDDDDD { alias......: ['MEI4'] chromosome.: 5 description: mRNA is meiosis-specific and has 88 bp intron at 5' end spliced independently of MER1. end........: 239773 exons......: [(1, 63), (152, 1315)] gene.......: MEI4 introns....: [(64, 151)] length.....: 1315 name.......: YER044C-A plength....: 438 start......: 238459 tdist......: 238459 type.......: ORF up.........: 0 } Scer: 3 donors and 2 branches Spar: 3 donors and 3 branches Smik: 1 donors and 3 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 359), ('Spar', 359), ('Smik', 359), ('Sbay', 359)] ->[('Sbay', 1875)] ->[('Scer', 143)] ->[('Scer', 1106)] ->[('Spar', 553)] ->[('Spar', 897)] ] [ ->[('Scer', 400), ('Spar', 400), ('Smik', 400), ('Sbay', 400)] ->[('Scer', 1137), ('Spar', 1137)] ->[('Smik', 1562)] ->[('Smik', 2025)] ->[('Spar', 2090)] ] 0~120: Scer.....: ---------------------aagtattgcgcatacttctt--atg-ggagatccaaattcccagtacattagt-ttgactctccttccttaatgttttcctctgta-cgattatttatg Spar.....: ---------------------aactttcccacatatttctt--ttg-tgaatcccccattttcattacattagt-ttaacttttcttctttaacgtttccctctgta-aaattatttacg Smik.....: ---------------------aagcttcgtacatatttattgcttgctgtactcttcacttttagtgcgttagc-c--actgttctttttaagt-------tcttta-caactattcgtg Sbay.....: ccagaaaccacatccataatctgctcataaacaaatactgcttttgctctattttactatcctttcatagaactatagactcatcttttttaacatttttttacacagcgcctatttatc consensus: ** * ** * * *** *** * * * * **** 120~240: Scer.....: tttaaacgattta-ttttactatgtatgtatttcctttca--------ttttctttcggagtcatatatattgctgggcggctaaatgtttccgac---ttgtaaaagaaaacataacaa Spar.....: ttcaaatgattta-ttttactatgtacatgcgtcttttca--------ttttctatccgcgtcatacatatcgctgggcggctaattatttccgatatattgtaacaacaaatataacaa Smik.....: ctcaaaaaa-ata-ctttactatgtatatgcttttttt----------tttttggtcggcatcatatatattgttaagcggctaaatatactcgatttattataactacagacagaacgc Sbay.....: tttgaacgatttatttttactacgtacaagcattcctttattttgtttttttttatcggcaccgttaccagtgctaggcggctaattattactgtt---cgagatagacatggagaaaac consensus: * ** * ** ******* *** * ** **** ** * * * * * * ******** * * * * * * ** Scer_spli: DDDDDD 240~360: total....: = Scer.....: acatcttgtagttgtgaaacagtttcattaaata-atcttttagaagagtaaggacATGAGTAGAGGCAAACTGGAAGATATGGAACAAAAGGAAACATCGGAAGTTGACTGGATAATCG Spar.....: acaccttgcagccataatagggtttcaccaaaaatatttcttagcagtataagaccatgagtagaggcaaattggaacatatggatcagaaggaaacatcagaagttaattggataatcg Smik.....: agaatttttagcaataacataatattgctaaac--atttctcagtagttcaaaaa----gttagaattaagtcagaatagatggataataaggaatcgtcagaagttgattggatagtcg Sbay.....: agaacctctattcatccaaaagacctactaagta-cccttgtagtgctacaccggta-acatattaggaaatt-gaacacatggaacaaaaggaaacgtcagaagtagattggattatcg consensus: * * * * * * ** * ** * ** ** *** * ***** * ****** * ** ***** * ***** *** Scer_spli: D Spar_spli: D Smik_spli: D Sbay_spli: D known....: > 360~480: total....: ===== ======= Scer.....: TACGT-GAAATTGTCACATCCTTAACCTAT-TTTC-TCTTTACTAACTTTTAGTAAGAG--GTGTAATCTCCTCGAA---TATTAT--CTATGACAGTGTTTTGCTTTAATTCAATCCAG Spar.....: tacgt-aaaattatcatatcgttgatctat-tttcttctttactaactgcaagtgagag--gtgtgctcccctccaa--ctctcat-aacatgacagtgttttgctttgattcaattcag Smik.....: tacgtaaaaattatcttaattttaacccgt-tatcttttttactaacttcagttgagaggtgtgtggactctaccaatcctttcaa-aatatgacagtgttttgctttgatcaaattcag Sbay.....: tatgc-aagaatgacatttctttgatctgtatttcttctttactaacattaagtgagag--gggcaaataaagccaaccatcttataaatatgacagtgccttgctttgattcagtttaa consensus: ** * * * * * ** * * * * ** * ********* * **** * * * ** * * * ********* ******* ** * * * Scer_spli: DDDDD BBBBBBB Spar_spli: DDDDD BBBBBBB Smik_spli: DDDDD BBBBBBB Sbay_spli: DDDDD BBBBBBB known....: ===============================================================================================>= 480~600: Scer.....: GAATCCTACGTTGTGGAAGAGGGCACTTTCAAGAAAGAAAGGA------------------GATGTCGAAGATGTAGGTGCTCTCAAGAGTGAAAAAAATTTAAAAATAAATCCTCGGGA Spar.....: aaatcctacgttatggaagaagactctttcaagaaagagaggg------------------gacgttgaaaatgtaagtactctcaggaatgagaaaaatctgaagataaatccacgaga Smik.....: gaatcctacgttatggaagaagactctttcaggaaagagagggaaatctgaagttgagattgacgctgaagttgaaggtgctcgcagaaatgaaaaaaacttgaagataaatccaaggga Sbay.....: gaaccctgcattatggaagagaattttccaaagaaaagaagag------------------aaggttagcgtagaacatgcttatagaattggaaagggatcgaagataaacccaaggga consensus: ** *** * ** ******* * * **** ** * * * * * ** * * ** ** ** ***** ** * ** Spar_spli: DDDDDD 600~720: Scer.....: AAACTCAAAACATATATACAAATGGGTTGCGCCTTTCGAAAATGGATTTTTGAATAATAAATCACTGTTTGCTCATCTGGAACCTATATACAATTTCCTTTGCCAGAATAAGTACAAAAG Spar.....: aaactcaaaacaaatatacaaatgggttgcgcctttccaaaatggatttttgaacaataaatcattgtttgctcatctggaacctatctacaatttcatttgtcagaataagtgcaaaac Smik.....: gaactcaaaacaaatatacgagtgggttgcccctttcaaaaagggatttttgaataataaatcattgtttgcccatttggaaccaatatacaatttcatttgtcagaacaagtacaaaac Sbay.....: aaactcaaagcatatatacgaatgggttgctcccttcaaagatgggtttttgaataacagatcgctgtttgctcatttggaacctgtatacaatttcatttgtgaaagcaaatacaagaa consensus: ******** ** ****** * ******** ** *** ** * ** ******** ** * *** ******* *** ******* * ********* **** * * ** * *** * 720~840: Scer.....: CTTCGAAGATGCAGTTGGTTTAAAGGAGCTGCAATCATTTAGCAAAGATGTATCAACTGCTGATATAAACAACTGGTTTTTACCGAGATATAAAATTCTGCTAAAAATCCTGAGCTTAAA Spar.....: tttcgaagacgcaatcgatttaaaagagctgcaatcattcagtcaagacatatcaactgcagatataaataactggtttttaccgagatataaaattctattaaaaatcttgagtttaaa Smik.....: tttcgaaaatgagattgttttgaaggagtttgaatctttcagtcaagatatatcaattgctgatttaaacaactggttcttaccaagatataaaattctactgaaaatcctgagcttaaa Sbay.....: ttttgaagatgtaatcgttttaaaagagctacaatcattcagccaagacatatcaattcctgatttgaacaactggttcttacccaggtataaaattctcctaaaggttctgagctcaaa consensus: ** *** * * * * *** ** *** * **** ** ** **** ****** * * *** * ** ******** ***** ** *********** * ** * **** * *** 840~960: Scer.....: AACAAAAGAAATTGACTTTAGAGGGTTATCGCAAGTGTTTCAAACACTCCAAATCTTGTTAGTTTCTCATTATTCGCATCGCATAGATTCTGATTCTTCTTTTAAGAGGACACTGATAGA Spar.....: gacaaaaggaattgatctcaaaggaatttcacaagtatttcaaacatttcaagtcctgttcgtttcgcactattcacatcgcttggattctgattcttcttttaagaggacgctggttga Smik.....: gacaaaagaagtcgaccttaaagggatttcacgtgtgttccaaacatttcaagttctcttggtttcccattatttacatcgtttagattcggattcttcttttaagaagacgttgattga Sbay.....: gacacagggagtcaatcctaagggaatctcgcaagtattccaaacctttcaagctctgttggtctctcattattcacatcgattagattctgatacttcttttaaaaagacatttgttga consensus: *** * * * * * * ** * ** * ** ** ***** * *** * ** ** ** ** **** ***** * ***** *** ********** * *** * * ** Spar_spli: DDDDDD 960~1080: Scer.....: CGTTCATGTTTTCAATTTCATCGCCAAGTTTCTGTTTAATAGAATTTTATTGAAGAAGAACCAAAACGATCCAAAATGGCTTCAAAACTTTTACGACCAGGGAGATGGCAAACATTTATG Spar.....: cgttcatgttttcaatttcattgccaaatttctattcaatagaattttattaaagaagaaccaaaacgatcccaaatggcttcaaaaattttacgaccaggaagatggcaaccatttgag Smik.....: cgttcatgtttttaacttcatcaccaaattcctgttcaatagaattctattgaaaaaaaatcaaaacgatcccaaatggatccaaaatttttatgatcagaaaaatagcaaccgttcaag Sbay.....: cgttcatgtttataacttcatcgccaaattcttatttaataaaatattattaaagaaaaaccatagtgaccccaagtgggtccgaaatttctaccaccaggaa---acaaaccctccaaa consensus: *********** ** ***** **** ** * ** **** *** **** ** ** ** ** * ** ** ** *** * * *** ** ** * *** * ** * * 1080~1200: Scer.....: TGATAAAGTTGACTACAAGCGCTTGTGTTCGTTGCATTTTACCCTTATTTACTCTATTATTAACATTCAACTCATCAAAATCAAGACAAACCAAACATTTGAACCGCAGATATTAAAATA Spar.....: cgataaggtcgactacaagctgttgtgttcattgcattttaccacaatttactctattattaacattcaactgaccaaaatcaagacaaaccaaacacttgagccacaaatatcagaata Smik.....: tggaaaagttgactacaggcagttgtgttccttgcattttaccacaatttactccattatcaatgttcaactcacgaagattaagatcaatcaaacgctcgagccacaaatatcagaata Sbay.....: tgacgatgtagattgcgagaatttgtgctctttgcacttcaccactgtttactctattatcaatgttcaattgattaaaatcaagacaaatcaaacacttgaaccgcaactctcagaata consensus: * * ** ** * * * ***** ** ***** ** *** ******* ***** ** ***** * * ** ** **** ** ***** * ** ** ** * * * **** Scer_spli: DDDDDD BBBBBBB Spar_spli: BBBBBBB 1200~1320: Scer.....: CGTATCTGTTCTGAAATTAATTGAACACATACTTATCATCATCGAAAGTCTGATACATGTACTTATTAGATTTGTATCGAAGCATAAACTAATATGCATCAACCGGAAAAAGGCGTACTG Spar.....: catatctgttttgagattaattgatcacatactagccatcgtcgaaagcctaatacatgtacttatcagatttttatcgaagcataaactgatatgtatcaaccagaaaaaagcatactg Smik.....: catatccgttttgaaattaattgaacacatacttgctattatcgaaagcttagtacatgtgctggttagatttgtatctaagcgtaaacagttatgtatcgaccgtaaaagggcgtattg Sbay.....: catctcggtcttgaaaataatcgaacacatatttgccattatcgaaagcctaattcatgtgcttgttagacttatatccaagcatgaacaaatacgcatcaaccacaaaagagcatactg consensus: * * ** ** *** * **** ** ****** * ** ******* * * ***** ** * *** ** **** **** * *** ** * *** *** **** ** ** ** 1320~1440: Scer.....: TCGAGTATACCTCGAAAGAGAATTGAGTTTGAAGAAAACCTACTTAAAGAACTTTTACAGTGTAATAAGCGGTGTCCCAGAAAAAGAGTTAGGGGGTCTATTGAAAATACTCAAGATAGT Spar.....: tcgaatatttcttgagagagagATGGGTTTGAAGAAATCCTACTTAAAGAACTTTTACAGTGTAATAAGTAGCATACCCGAAAAAGAGTTAAAGGGACTATTGAAAATAGTCAAGGTAGT Smik.....: ccgaatatatcttgagagggaactgtgtttgaggaaaacctacctaaaaaacttttacagtgtaataagcgagacaccaggaaaagatttgcaggatctattgaaagtagtgaagacagt Sbay.....: tcaggtatatcttgagagagaattaagtttgaggaaaacctatctaaggggcttctacagtacaataagtgctattccaaaagaagaactgcaaggcctcttaaaaATGGTCAAGATAGT consensus: * *** ** ** ** ** * ****** **** **** *** *** ****** ****** ** * **** * * ** ** *** * * *** *** 1440~1560: Scer.....: TATTCTATCATTGCTCGAGACATTTGAAAGCATTGAATGGCAGCACTTAAAACCTTTCCTGGAAAAATTTCCGGCTCATGAAATATCGCTTCAGAAGAAAAGGAAATATATACAGGCGGC Spar.....: TATTCTATCATTGCTGGAAGCATTGGAAAGCATTGAATGGAAACATTTAACTGCCTTCCTGGAAAAATTTCCCGCACATGAAATATCTCTACAAAAGAAAAGGACATATATACAAGCGGC Smik.....: tatcctatcgttactcgaaATGTTGGAAAGTATTGAATGGAGACACCTAACAGCCTTTCTGGGAAATTCTCCAGCGCATAAAGTCACGCTACAAAAGAAAAGAGCGTATATACAGGCTGC Sbay.....: TATTCTATCCTTACTCGCAGCATTAGAAAGCATTGAGTGGAAATATTTCACTGCTTTCTTGGAAAAGTTCCCTGCATATGAGACATCACTACAAAAGAAAAGAGCGTATATACAGGCTGC consensus: *** ***** ** ** * ** ***** ***** *** * * * * ** *** *** * ** ** ** * * ** ** ******** ******** ** ** 1560~1680: Scer.....: CTTATTAATTACTGCCGAAAGAAATTTGATAGCGCGCTTTCGATTGTCAAGATGGTTCAATGAGACAGAAAACATTTAAtttttcttttgcagtaggaggcgcattataaaacacaaaaa Spar.....: ATTATTAATGACGGCCGAAAGAAATTTGATAGCACGCTTTCGATTGTCAAGATGGTTCAATAAGACAGAAAATATTTGA--ttacgttttcaataagaggcgcattataaaacgcaaata Smik.....: TTTACTAATCACGGCCGAAAGAAATTTGATTGCACGCTTTCGGTTGTCAAGTTGGTTCAATAAGACAACAGGTGATTA-------TTTCTCAAGAACGG---------AGAATACATCTT Sbay.....: TCTATTGGTTACGACCGAAAGAAATTTGATTGCTCGTTTTCGGTTGTCAGGCTGTTTTAACAATACAACCAGTACTTGA--------ttcctgaagggatcgcattataataaaaaaaaa consensus: ** * * ** **************** ** ** ***** ****** * ** ** ** * *** ** * * * * * * Smik_spli: BBBBBBB 1680~1800: Scer.....: tatcgaaagctctttcatttcggggacaacaacttcagttgaaaat------tacagtgaacac--aacatctt--ccccaacagacctacattaaaacgcttcttccggacttgc-cca Spar.....: ta-caaaaattcattctgtttggggacggcgacttcagtcgaaaag------tacagtgaatac--aacgtctt--ccccaacagaactgcattaaaatgctttttccggacttgt-cca Smik.....: CGTCGAAGG----------TGGGGGGCGACGATTTTAGTTGAagtg------ttcattgaacatggaacatcttcgccccaacaaaacagcattaaaatgctttttacggacttgcgcca Sbay.....: taggaagacacgtttcgtttaaggcacaaaaaattcaatcatagaggttcaattcaatgaatagagaacgttgtctccccgacta------tttgaaatgcttttt-cggacttgcacca consensus: * * ** * * ** * * * * ** **** * *** * * **** ** ** *** **** ** ******** *** 1800~1920: Scer.....: -tgattaacctaatcttatacgaact-gaattaaac--tttacggtattaccgataggaaacttcta--ttttatg-attttttcgttcggggacggaacgaacaggaaacaaaaaaaaa Spar.....: -tgattaacctaatcttatacgaact-gaattaaac--tttacggtattaccgataggaaacttcta--ttttttt-tttttttcgttctgagacggaacgaacaggaaat-aaaaaaaa Smik.....: -tgattaacctaatcttatacgaatc-gaaataagc--tttacggtattaccgataggaaacttctattttttttg-gtttcttcg-tctaaaacggaacgaaaaggaaac---agaaaa Sbay.....: ttgattaacctaatcttatacgaaccggaattaaactttttacggtattgccgataggaaaaagttagctcttttgtacgttttccttttaggacggaacgaaaggaaaac--gtaaaaa consensus: *********************** *** *** * *********** *********** ** * ** * * *** * ********** * *** **** Sbay_spli: DDDDDD 1920~2040: Scer.....: ggtacgatccattgtattctc--tac--ccccgtatataaaactaagctgaacaagcctgttg-ttttgctttactattgctactatttttgacgtaaacgcattgactaatttcag-gt Spar.....: ggtacgatccattgtattctc--tac--ccccgtatataaaactaagctaaacaagcctgttg-ctttactttactattgttgctatttttgacctaagcatattgactaatttcagagt Smik.....: ggtacgatccattgtattctttatac--ccccgtatataaaactaagctaaacacgtctattg-cattactttactattgttgctagttttaacatagactcattgactaacttctg-ac Sbay.....: ggtacgattcattgtattgtctgatctgccccgtatataaaactgagccgaacaattctgttgacgttgtatcact-tagttgctattttt-acataag-aagccatttagtttctg-aa consensus: ******** ********* * * **************** *** **** ** *** ** * *** * * * *** **** ** ** ** *** * Smik_spli: BBBBBBB 2040~2107: Scer.....: ttttatattcttgacactagctagaccatagtatc-gaaggattcaaatacactaaagtatcagata Spar.....: ttttatattcttgacactagctaaactatagtatc-aaagacatcgagtacactaacttatcagata Smik.....: ctctatcctcttgacactagttatattacagtatc-aaaaacttcaagaacactagacaatcaaaga Sbay.....: ttttacattcttgacttgaggaataccatagtaccaaaagacctcagatatatcaatcaaacaaaa- consensus: * ** ******* ** * * * **** * ** ** * * * * ** * Spar_spli: BBBBBBB { alias......: ['RPL34A'] chromosome.: 5 description: Ribosomal protein L34A end........: 270183 exons......: [(1, 37), (435, 763)] gene.......: RPL34A introns....: [(38, 434)] length.....: 763 name.......: YER056C-A plength....: 254 start......: 269421 tdist......: 269421 type.......: ORF up.........: 0 } Scer: 5 donors and 4 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 79)] ->[('Scer', 236)] ->[('Scer', 588)] ->[('Scer', 2120)] ->[('Scer', 2486)] ] [ ->[('Scer', 129)] ->[('Scer', 515)] ->[('Scer', 926)] ->[('Scer', 1347)] ] 0~120: Scer.....: gggcaagtcttaatagcgtcttttagaacttaggattttactacgtattttttagctttataatataaagcccatagaagtatgactttcatcaccttcccatctgaagaatgtacattg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: tacattgtatactaatttacttggttccttctacaaatacgatgctcttcgaggactgttttttccattaaacattaggatgtaaaggtgttctcaaatatataacacatttagtggtat consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDD 240~360: Scer.....: gtatgggtgataaatttttttccatatattgtgaaaaaaaaaagaagcttgactttcgctgttcccgcttacgactacgctcccccgctaggttccctttaggccgtcattttctactga consensus: ************************************************************************************************************************ Scer_spli: DD 360~480: Scer.....: gccaaggcgattctggtagttactcgcgcttggtcccctaccaacgagtcgcctggtcgacgcttcctccgtgtaatttcgtgagcctaggcgcagaggatattatctagaaggaattga consensus: ************************************************************************************************************************ 480~600: Scer.....: aatattatagattaattacgcttagtgttaaacggtattaacgtgtagactgcataacagaacaaccaaagATGGCCCAACGTGTTACTTTCAGAAGAAGAAATCCATGTATGTTAAAGG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDDDD known....: >=========== 600~720: Scer.....: CACACTTATAAATTACGAGAAATTCTGACGAGATGATGATTATTCAACTAAAAAAGAGCAAGAGAGGAGAGGATACCATGTCAGGGGTCCTAGTATAGTTATCAAAAGCAATTTACCCCG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: TTTTTGTAATCCACTATCAATAACTTATTCTGCGCGAAATATTGTGTCCAGAAATAATACAATATTAGTAGCAATGAGAAGAAAAACGATAGTTAATAAGAGCAGCCACTTTTAACCCTG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: ATACTGACTAGAGCTAATAATCTCAATCTGTGTTACGAAAATTTCTTTTAAAGTTTTCTCGAACTCCTTCCTATTGAAACATTTCGTACTAACATATTTTTCAAATGAGAAAGTATACCA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: ACTTTCTGAAAACATTTTCAAATAGACAACACCCGTTCTAACAAAATCAAGGTTGTTAAGACCCCAGGTGGTATTTTGCGTGCCCAACATGTCAAGAAGTTAGCTACCAGACCAAAGTGT consensus: ************************************************************************************************************************ known....: =======================>= 1080~1200: Scer.....: GGTGACTGTGGTAGCGCTTTGCAAGGTATCTCTACTTTGAGACCAAGACAATACGCCACTGTTTCCAAGACCCACAAGACTGTTTCCAGAGCTTACGGTGGTTCCAGATGTGCCAACTGT consensus: ************************************************************************************************************************ 1200~1320: Scer.....: GTTAAGGAAAGAATTATTAGAGCTTTCTTGATCGAAGAACAAAAAATTGTCAAGAAGGTTGTCAAGGAACAAACCGAAGCTGCCAAGAAATCTGAAAAGAAGGCTAAGAAATAAacttta consensus: ************************************************************************************************************************ 1320~1440: Scer.....: agaaaatgttacttttcttatgtacctaattaactgttttatataaagcacgaataaaaataattcatatcacaagaaaactttcatggctctagcgctctatgaataatgctttttgta consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1440~1560: Scer.....: atgttgtcgagctactatttcttcattaatcatcgtcatccatagccatgggaatttagtagtcaatcgcctgtccaactgtagacgacgtaactctgctataaaaaagacctgttcata consensus: ************************************************************************************************************************ 1560~1680: Scer.....: ttttattttttttttttcatgtgccacgaacaatttaatgtatgggaatacaactgcaaaagaaaaaatcaaaaaaagaaatcacacaccacaaacaccaaacattatgccagaagcttt consensus: ************************************************************************************************************************ 1680~1800: Scer.....: cgccaaatcctgcgtcgattaatttaatgtgaacaccacctcagatctaacactgatgaaaagccttacaaatctcaacacatcttttcctttatgaagaagagtgccttgcacaaccat consensus: ************************************************************************************************************************ 1800~1920: Scer.....: acatacaggaacttgataaagcctacagataaaatccaagtggaaagtaaacaaaaaatcctagagaatgctcgctgaaaaaaaaaagatgtcaagacagattacgtcgtaaattcagcc consensus: ************************************************************************************************************************ 1920~2040: Scer.....: actttcaaccaagtttccgtaatcatattaatttctgaaattaattaatctaacgtatctcatatcttttttaagtgatttacctgtggagaacagcaaagaggtcatccaagacagaaa consensus: ************************************************************************************************************************ 2040~2160: Scer.....: atcgatggatactggtcttattcggtcaaagtgactgcaatactcctctgcggatttgcttagtgttagaaaatcgagcggcatgttttcttttgtcaccaatggaacggcctcaaggaa consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2160~2280: Scer.....: ctaaatatcagtcgattttatcgcctttcccgagtggggggcgtattcgtacaaattgactctttttcagaaatgtctgccgcccgcgttcggtcattaatgcacagctttatcgcgatt consensus: ************************************************************************************************************************ 2280~2400: Scer.....: gccattgacttctacgtacatatagttgctacgtcttcgccttatcaataaataattatgagtctttaatttcttttttttcattgtcagaatttttcatgtcctttttttttttttttt consensus: ************************************************************************************************************************ 2400~2520: Scer.....: ctcgatgatcaagatgttagggaaccaaccaagataatggttttaatataaatatccattaaaaatatttagacagtaaaatagtggtgagtctaaaacgcgttggaggcatttttcttt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2520~2622: Scer.....: gaaatgtagataagtaagcttaactgtaatagtattcacaacaatatccatataaatttcgcatataaaacatcctatcctctattataacgatttataaga consensus: ****************************************************************************************************** { alias......: ['RPS24A', 'RPS24EA'] chromosome.: 5 description: 40S ribosomal protein S24A end........: 307192 exons......: [(1, 3), (470, 874)] gene.......: RPS24A introns....: [(4, 469)] length.....: 874 name.......: YER074W plength....: 291 start......: 306319 tdist......: 269677 type.......: ORF up.........: 1 } Scer: 5 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 34), ('Scer', 38)] ->[('Scer', 370)] ->[('Scer', 732)] ->[('Scer', 1394)] ] [ ->[('Scer', 543)] ->[('Scer', 1150)] ->[('Scer', 1606)] ] 0~120: Scer.....: agtaactcaggcccgagttgactgctcattgaaggtatgtatgataaacattatagaataatgaaaaatgcctcgtgacatacagataaaatctaacaaggatatattcaaaaaaaaaaa consensus: ************************************************************************************************************************ Scer_spli: DDDDDDDDDD 120~240: Scer.....: acaaaacaaaaaaataataacgtgataaacattaatgaacaatgtatttacattcttaagcataggtgagaaattaccttctttacttttttttttttttttggtgatattgtatattaa consensus: ************************************************************************************************************************ 240~360: Scer.....: aatatatagtaatcaaattcgtttcattgatcaaattgctcactagttcttttttcaaaaatttcatctttataggtagatacaagtgccagagagatatataaacagaaaactctatcg consensus: ************************************************************************************************************************ 360~480: Scer.....: atgtgataatgtatgccattatcgggactgtacacccacacatttacaagcccacacatcctacaactttcttttcatttcttgcgcttcttccactgtcataaaatatgattgtccgat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 480~600: Scer.....: gccgcagcctacgcctcggcgagtattcatcacctaagcgtcctgtaggcggggccacgcagtcactaacggaatactccagaaggctgcttcctttggaaggaagtttcactcggttgt consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 600~720: Scer.....: ccacccagcgctttaactttgtctcagcgaagaagaattgaataactatagtgaatttcaagagctagaggatggttaggtattagttcaaaacaaagatttcaagaaaccaacatagat consensus: ************************************************************************************************************************ 720~840: Scer.....: taagcagaaATGGTATGTTAAAAAGTGCTCAGATGAAAGATGACGTCCCATATTCCATGTTAAAGTTGCCATGAGTTAGTATAAAAGGCAATAAAGGTACCATAACGAGAAAAGAAAGTA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >=========================================================================================================== 840~960: Scer.....: AAAGAAGAAATGTTTTGCAAATTTAAGGTGGCGTAACAGCAACTATTGGCTAATATATTAATGGCAATCATTGTGAAAAGAAATGTGAAATCCGTATCGTAATTGGTTAAATTTATAACT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: CAAATTTAAACACTCGAATAGCTGACCCGTAATATTTTATCCCGCTTTAAGAGTTCAACGCTAAAAAATGATATCTAGCTAACCATTATGCTACAGGAACCTTTTTTGGACTATTATCCC consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1080~1200: Scer.....: TATCATGAAAACTGGAAGGATCTTTCAAGGACGCCATTTCCAAAGATTTCCCCCACACTGGAACCTATTTTACTAACAATTTTTAAAATGGTTTTTTACCTAAATTGTTTTTTCTCAGTC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ====================================================================================================================>= 1200~1320: Scer.....: TGACGCTGTTACTATCCGTACTAGAAAGGTTATCTCCAACCCATTGTTGGCCAGAAAGCAATTCGTCGTCGACGTCTTGCACCCAAACAGAGCTAATGTCTCCAAGGATGAATTGCGTGA consensus: ************************************************************************************************************************ 1320~1440: Scer.....: AAAATTAGCTGAAGTCTACAAGGCTGAAAAGGACGCTGTCTCCGTTTTCGGTTTCAGAACCCAATTTGGTGGTGGTAAGTCTGTTGGTTTCGGTTTGGTCTACAACTCTGTTGCCGAAGC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1440~1560: Scer.....: TAAGAAGTTCGAACCAACTTACAGATTAGTCAGATACGGTTTGGCTGAAAAGGTTGAAAAGGCTTCCAGACAACAAAGAAAGCAAAAGAAGAACAGAGACAAGAAGATCTTCGGTACTGG consensus: ************************************************************************************************************************ 1560~1680: Scer.....: TAAGAGATTGGCTAAGAAGGTTGCTCGTCGTAACGCCGATTAAgcaaactaacttcaaaacgttaaatcatttttacggattgtttagttttctatatataaatatgtgtatctttttcc consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1680~1800: Scer.....: aataaaaaatataatcaataattttaagagatccgtggattcatttcgtaatagaaaatctcggaaaaatggtacagaatattgttggctaagtgcttcagattgcatcatcagaaaagt consensus: ************************************************************************************************************************ 1800~1920: Scer.....: aaaaatacccccgtaatccatcttctctacatttaatctcatagtgctcgtaatgtctcgaaatttgtctttcgtgatcattgcacagtcttttcatttgtcacagtcacgtgattacat consensus: ************************************************************************************************************************ 1920~2040: Scer.....: ttaagtacagtatatccaaaaaattagctggactgggagccttctcaataagttggcggtttatatactcaaacctattaataggaaagaactcacaaaagaagccttttggaagagaaa consensus: ************************************************************************************************************************ 2040~2059: Scer.....: actttgatatagaggggat consensus: ******************* { alias......: [] chromosome.: 5 description: Hypothetical ORF identified by homology. See FEBS Letters [2000]487:31-36. end........: 308119 exons......: [(1, 95), (195, 305), (414, 471)] gene.......: introns....: [(96, 194), (306, 413)] length.....: 471 name.......: YER074W-A plength....: 157 start......: 307649 tdist......: 268750 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 550)] ->[('Scer', 760)] ->[('Scer', 1065)] ] [ ->[('Scer', 3)] ->[('Scer', 603)] ->[('Scer', 842)] ] 0~120: Scer.....: gcaaactaacttcaaaacgttaaatcatttttacggattgtttagttttctatatataaatatgtgtatctttttccaataaaaaatataatcaataattttaagagatccgtggattca consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 120~240: Scer.....: tttcgtaatagaaaatctcggaaaaatggtacagaatattgttggctaagtgcttcagattgcatcatcagaaaagtaaaaatacccccgtaatccatcttctctacatttaatctcata consensus: ************************************************************************************************************************ 240~360: Scer.....: gtgctcgtaatgtctcgaaatttgtctttcgtgatcattgcacagtcttttcatttgtcacagtcacgtgattacatttaagtacagtatatccaaaaaattagctggactgggagcctt consensus: ************************************************************************************************************************ 360~480: Scer.....: ctcaataagttggcggtttatatactcaaacctattaataggaaagaactcacaaaagaagccttttggaagagaaaactttgatatagaggggatATGGTACTGTTTGGACTAGGTAGA consensus: ************************************************************************************************************************ 480~600: Scer.....: CTATTTTACGTCATTTTATTATTGATTAATGCCGTTGCAGTACTGAGCGAAGAAAGGTTCTTAAGAAGAAGTATGTAAACAGGAGAGGCAACCATAAACAACTTATTTTAAAGCAACAAT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >================================================ 600~720: Scer.....: TAATACTAACTTTATTGAATATGCTAATACATTATTTCACCGATTTTTGCAGTTGGCCTTGGAAGATCAAATGATGAGACACCTGTTTTTGGTCAGGATCAAAATACCACGAAGTCCAAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ================================================>= 720~840: Scer.....: GTTGTTCAATTGATTGGCGCCGTACAGACATTACTGAGGAGTATGTTATGTTGATGGAGAACGGTTAAAGTTACATTTCATCAGTTTTTTCCCGTTCTTTTTCACCTTTTGTGAGAAAAT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================================================================== 840~960: Scer.....: TTTACTAACGTTTCGTATATTATTCTTGTAGTACCATTAATTGGAATAAATATACTGGTGATTGTTTATGAATTACTATTGGGATGAactaagcgtacgaagcaaatattacatactact consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ===========================>= 960~1080: Scer.....: atatacaagaaacaggctctaatagtttttttttcccttcaccttttcggttttagctttattataaaagatatgaacaaaacctccaagggtagtggtagcatggtatgtgaaattaga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1080~1200: Scer.....: gagttcatgcataacttgaaatgaaaataatactctgttacgtagctaactactgccaaatatgtatcgaaaatatcaattattaaggggtttcgtattaataaaatagagatcaaatac consensus: ************************************************************************************************************************ 1200~1216: Scer.....: attcatattagcctaa consensus: **************** { alias......: [] chromosome.: 5 description: Hypothetical ORF end........: 348396 exons......: [(1, 124), (200, 489)] gene.......: introns....: [(125, 199)] length.....: 489 name.......: YER093C-A plength....: 163 start......: 347908 tdist......: 228473 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 2 donors and 1 branches Smik: 3 donors and 2 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 469), ('Spar', 469), ('Smik', 469), ('Sbay', 469)] ->[('Scer', 644), ('Smik', 644), ('Sbay', 644)] ->[('Scer', 157), ('Spar', 157)] ->[('Scer', 621)] ->[('Smik', 1058)] ] [ ->[('Scer', 520), ('Spar', 520), ('Smik', 520), ('Sbay', 520)] ->[('Scer', 785)] ->[('Smik', 256)] ] 0~120: Scer.....: tcggttcatggcaatctcatggtcccaaaaaca---accccaacacaaaatatcagcggaacg-------tcaagaattttccacatccaactcatctttaatttttaagtaaacagaat Spar.....: tcggttcaagacaatgccacggccccaaaaaaagagaacccaatacaaaatatcaccggaaca-------tcaaaaaatttccgcatcttactcatctttaatttgtaaataaacagaat Smik.....: tcgattcatggcaatgccatggccccaaagaaa-aagcagcagcacaaaataactcctaaacggaagagatcaaaagatctttacatcttactcatctttaatttctaagtaaacagaat Sbay.....: tcaatcctgatc--cgtcaaagaccaaaaaaaaacaacaaca--aggaaacatcccttaatcagaaggagacaagaaacctatatatctttctcatctttaac--ctaaataaacaaaac consensus: ** * * * ** * ** *** * * ** * *** * * * * *** * * *** *********** *** ****** ** 120~240: Scer.....: agatcgaatgaatatat-aaatactaaaatgcataaagtcagtcgaagatctgagtagctatccgctggctgtccttttctaaggagcagcgttattcaccagccgcgagtctcttg-aa Spar.....: agatcgaatgaatatat-aaatactaaaatgcataaagtcagttgaagacctcagcagctgtttgctggctgtactttttaaaggaaaagcgttattcaccatccgcgattctcttgaaa Smik.....: agatcgaatgaatatat-aaatactaaaatgcataaagtcaaatgaagatccaagcagttctccgttggttgtactttttagaagtcaagcgttgtccaccagccgcgattcttttg-aa Sbay.....: aaacaaaacgaatatataaaatactcaaatgcataaagtcaagtaatagtcgaagctgcc--------gttgtgctcttcatgcggcactcgttggaaacaag-cgcgacagtcttg-aa consensus: * * ** ******** ******* *************** * * ** * * *** ** ** * **** ** * ***** * *** ** Scer_spli: DDDDDD Spar_spli: DDDDDD 240~360: Scer.....: aaattggcgcttttaatacttattaggatggggaacttgattctttgacgggt-----ttgtcagcaattagtacgactatcctacttcatcaagaaacgaaactATGATCGAAGAGAAG Spar.....: aaacagacgcatttagtacttactagaatagagaaattaatatcttgacaggc-----ttatccgcaattagttcga-----ccacttcatcaatgaacggtactatggccgaagagaag Smik.....: aaactgatgcatctaatactaactcgaatagggaaatatcttcttgagcagta-----ttgtctgcgactaatacga-----ccgattcaccaATGAAGGAGACTATGGCTGAAGAGAAG Sbay.....: aaaccgacgcttct-gtagtaacttggatatggaaataacctcttcggtaaaccaccacaattcgtcgttgccATGATGA--CAACTACGCCAATGAGCAGCACTATGACTGACGCGAAG consensus: *** * ** * * ** * * * * ** *** * * * * * ** * * * *** * ****** ** * **** Smik_spli: BBBBBBB 360~480: total....: ====== Scer.....: AAGGAACTTAAGAAACGCAGGGTTCTTCAAATGGCCAGATTTTATGGTGCGGCCGCCTTCACCCTGATTACCATGAGGCTTATCTCCAGGGCCATAAAAGTACGAAAATGTATGTATTTT Spar.....: aaggagtacaagaaacggagggttctccaaacggccaaattttatggtgcggccgctttcaccctgatcaccatgaggctaatctccagggccataaaagtacgaaaatgtatgtaattt Smik.....: AAGGAGTACAAGAAACGGAGAGTTCTCCAGATGGCCAAATTTTATGGTGCGGCCACTTTCACCCTAATTACTATGAGGCTAATCTCCAGGGCCATAAAAGTACGAAAATGTATGTGGTTT Sbay.....: AAGCAGTACAAGAGAAGGAGGATACTCCAGATGGTCAAGTTTTATGGTGCAGCTTCTTTCACCCTCATCACCATGAGGGTTATCTCCAAGGCCATAAGAGTACGAAAATGTATGTAGCCG consensus: *** * **** * * ** * ** ** * ** ** *********** ** * ******** ** ** ****** * ******* ******** ***************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >========== 480~600: total....: ======= Scer.....: GTCCTAGTTCAGTGGCCAAAACTAATAATAG-GATATAGTTACTAACACCGTCTACTGAAAGCAGACGTCCCCAGCATATTTCAACAAAATTACAAGCTTCCACCTTTTTCCCAAAGGAA Spar.....: gtcctattactggtagtaacaggaatgaaagaaatctttttactaacaacgtttatcgaaagcagatgttcccactATGTTCCAACAAAACTACAAGCTCCCACCATTTTCCCAAAGGAA Smik.....: CACTGATTGTAGTAGCGGGAAGTAGCACGAATAAC-TTTTTACTAACACCTTTTATTGATAGCAGACGTCCCCACCATGTTCCAACAAAATTACAAGCCCCCACCATTTTCTCAAAGGAA Sbay.....: GCCCT--TTTTGTAGCCAGAAGCAATAATCA-AAC---TATACTAACACCGTTTGC---AAGCAGACGTCCCCACTATGTTCCAACTGAACTACAAGCCGCCACCATTCTCTCAAAGGAG consensus: * * * * * * ******** * * * ****** ** **** ** ** **** ** ******* ***** ** ** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ===============================================================>= 600~720: Scer.....: TGAAGCCATGTCAGCGTTAACGTATGCATCCGCCGCTTCAATAGGTACGTTCAGCACATTGATATTCGGCTTTTGTTGGGCACTTGACATTTCAACGGCAAGAGAGTTTGTATTTAAGAC Spar.....: TGAAGCCATGTCTGCATTAACATTTGCATCCGCTGCTTCATTAGGGACGTTCAGCACATTAATATTCGGATTTTGTTGGGCACTTGATATTTCAACAGCAAGAGAGTTTGTCTTTAAGAC Smik.....: TGAAGCCATGTCTGCGTTAACATTTGCATCCGCCGCCTCAATGGGTACGTTTAGCACGCTGATATTCGGATTCTGCTGGGCATTTGATATTTCAACAGCAAGAGAATTTGTTTTAAGGAC Sbay.....: CGAGGCAATGTCCGCGTTGACGTTTGCATCCGCTGCTTCGATAGGTTCGTTCAGTACGCTGGTATTCGGATTCTGTTGGGCATCGGACGTTTCAACGGCTAGAGAATTCGTCCTCAAGAC consensus: ** ** ***** ** ** ** * ********* ** ** * ** **** ** ** * ******* ** ** ****** ** ******* ** ***** ** ** * * *** Scer_spli: DDDDDD DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 720~840: Scer.....: TAGAGAGTTCATGAGCCTTCCACAAGCCTTAGAAACCGACACGAGCATGGACGAAGAAACTTCCAAACTAACTAAGCAATTGCAAGACCTCCTGTCGAGCGAAAACAACAAGTAGca--c Spar.....: TAGAGAGCTTATGGATCTTCCACAAACTTTGGACACTGATACAAGCATGGACGAGGAAACCGCCAAATTGACTAGGCAATTGCAAGACCTACTGTCGAGCGAAAACAACAAGTAGca--c Smik.....: AAGAGAGTTCATGGGTCTTCCCCAAACTTTAGACACTGATACGAGCATGGACGAAGAAACTACCAAATTGACAAAGGAGTTGCAAGATTTACTGTCTAGCGGGAACGACAAGTAGcg--c Sbay.....: AAGAGAATTCATGGGTCTCCCTCAAACGTCAGACACTGATACAAGTATGGACGAAGAAACAGCCCGTTTGACAAAGCAATTACAGGACCTTTTATCAAGCGATAAAGACGAGTGAgggtc consensus: ***** * *** ** ** *** * * ** ** ** ** ** ******** ***** ** * ** * * * ** ** ** * * ** **** ** ** *** * Scer_spli: BBBBBBB 840~960: Scer.....: tacgcattggcttaatctctttaaactgtaaataatggtataactacgagccgtt-gccggctggtcacata-tcgtatatccgtatacattctttcttcttttaattatacatattgta Spar.....: tacatattggctcaacctttttaaactgtaaataataatataattacaagctgtt-gccagctggtcacgtattcgtgtatctgtatacatcctttcat-------ttattcatactgca Smik.....: cacgcattgatcgatactccctaaactttacat-ataatgcaatcacaagccgtt-gctatctggtcacatatttgtatatctgtatatattctttcttc---taattatacgtgcaatg Sbay.....: gatgttttgtcctacctttgtcacactgtaa---ataacacaactacacaccaccaactggccggttacgtgttcatatatttgtatacattctttgttg-tttaactatgcatat-ata consensus: * *** * * * *** ** ** ** ** * * * *** ** * * * *** ***** ** **** * *** * * 960~1080: Scer.....: atctttttcttttttgcattctcttaaaa--attgattgatccatcggcgaaatggaagatggaatatcaagcag-ttctattgttc-tcggatataac--taaggtaccttcaatttgt Spar.....: gtctttttcttttttacgttctcttgaaa--attgattgatccatcggcgaaaaggaagatgaaatatcgatcagtttctattgttc-tcggaaataac--taaggtaccctcaaattgt Smik.....: gttctttttttttttacgttctcttggaa--attgattgatccatcggcgaaaaggaagatgaaatatcgatcaattcctattgttc-tcggatataag--taagtta-ctccaaattgt Sbay.....: gtagttttttttttcctacgctcatgaaaatattgattgatccatcggcgaaaataaagatgaaatatcgatcaattcctattgttcttcggatataacaacaaagctttctcaaaatgg consensus: * **** ***** *** * ** ********************** ****** ****** * ** * ********* ***** **** ** *** ** Smik_spli: DDDDDDDD 1080~1146: Scer.....: aggtgtacacgctagggaggttgcttcgtgctgtacc-gcttctattaagtttttgaaa-ttcaca Spar.....: aggtctacacgctaggtaggtcgcttcgtgctgtacc-ac-tctgtcaa-tttttgaga-ttcaca Smik.....: aggt-tgcacgttagggaggacgcttcgtgttccaccagtttctgtgatttcact----------- Sbay.....: aatcctacacaccagggaggacacttctcgttggaccatctcgcgaagtttttttatgatttcaca consensus: * * *** *** *** **** * * *** * * { alias......: ['RPL23B'] chromosome.: 5 description: Ribosomal protein L23B (L17aB) (YL32) end........: 397649 exons......: [(1, 42), (514, 885)] gene.......: RPL23B introns....: [(43, 513)] length.....: 885 name.......: YER117W plength....: 295 start......: 396765 tdist......: 179220 type.......: ORF up.........: 1 } Scer: 1 donors and 2 branches Spar: 2 donors and 2 branches Smik: 4 donors and 1 branches Sbay: 6 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 665), ('Spar', 665), ('Smik', 665), ('Sbay', 665)] ->[('Sbay', 1628), ('Sbay', 1624)] ->[('Sbay', 217)] ->[('Sbay', 851)] ->[('Sbay', 1218)] ->[('Smik', 560)] ->[('Smik', 868)] ->[('Smik', 1981)] ->[('Spar', 798)] ] [ ->[('Scer', 1098), ('Spar', 1098), ('Smik', 1098), ('Sbay', 1098)] ->[('Scer', 102)] ->[('Spar', 406)] ] 0~120: Scer.....: acaaggtgtaatta-atttactcgtttgttacttggccgcccctttatattgactcagtag-gggaaaaagtactgttga-tcgaagaaagaaagttgttcctactaatcttccgcatgc Spar.....: acaaggcgttatta-atttactcgtttgttgcttaactggct-tttattttggctcgatag-gaaaagaggtatggttaa-tggaagaaaaaatgttgtgcttagcaattttccaagtac Smik.....: acaaagttttgcta-attcacttgtttattgtttaattagat-tttatcttggttaggcagtaaaaaaaagtacggtaaaatgaaattaagcacgctgtacctagt--cttttctgatac Sbay.....: acaaatggttgttctattttcttgttgattgtttccctaattcttcttaaccttacaagaaaagggatgtaaacaaaaaattgaaaaggcaagtatag-gtctagtg--ctttctaacac consensus: **** * * *** ** *** ** ** ** * * * * * * ** * ** ** * * Scer_spli: BBBBBBB 120~240: Scer.....: tctaatatc-tgacatattatcccttctcttctgtaatttcctaaaatacaaatagatgtagaaaacagttctttctttccctgttgtat-acatccgtacacttttgt-gaacccaaac Spar.....: tctgatttcctgacatattatctcttctctcctgtaatttcctaaa-tacgaatatgtgtagaaaacagttcttttcttccc-attgtat-acatccgtacattattgtagaacccaaat Smik.....: ttcaatact-tgacatattttctcttctcttctggaatttcctaca----acataggcgttggaagtagtttccttgtttta---agtac-acatccgtacatttattattcacccatac Sbay.....: tttgatgcaataaactattttcctttcgcctgtgaaactctctattac-taagtaaacgagaattaaaggttgcttttttgcttggatattacacccgtacgtttcctctttttacaccc consensus: * ** * * **** ** *** * ** ** * *** ** * ** * * ** ** *** ****** * ** Sbay_spli: DDDDDD 240~360: Scer.....: attttttgtttaattt---gaaagatttttttctatta----ggagccgtctccttcaattctcggcaaagcgagggttcctctc-atgcttactgttctc------ttcccc-accggc Spar.....: ctttttcattctgttttttgaaagacttttttttttcaacgagataccgccctcttcaaccatgagcaaggcgagagcaccttc---tgcttacgcttctt------tttccctgccgga Smik.....: cttgtcttatttttttttcacatgactgtttttc-tcatc--aaatgcgccgcttccaattttgagcagggagaagctctcctc---cgcttattcttctc------ttct--------- Sbay.....: atgcctttttttgtttct------gctcttcttt-tca----aaaaatattttttccaat--ggaggaatgcgaattcgcttttctgccctcagcgtgcccgcggctcccctctgccgcc consensus: * * *** * ** * * * * *** * * * ** ** * * * 360~480: Scer.....: agctgctgggaaccctccaacatgctgtgcacgggggagggacagtagctaactacctttcacttgggcgggaaa-ctgaaactaatacggtgctgtcccggcttgcgcctct--gagac Spar.....: agctactgagtctcctctggtacgctgggcgcaggc-agagacagtaactaacgatctttcacttgggtgggaaagctgaaaccagtacggttccgcccgggtttgctgctct--gagac Smik.....: --ttgctaggatctct---------tgagctcggaagggatggatttgctagtaatcttttctttgggcaggaaagctagaccaaatacggagccggccaggctcgctgtcctt-gtgac Sbay.....: ggctagtcaattccattggcatccttggtactgttagagggagtgttgccggtagtctcttttctgggcagagaggccagcgccaacatg-cgccggccaggctcgttgtcctttcagtt consensus: * * * ** * * * ** * **** * * * * * * * * * ** ** * * ** * Spar_spli: BBBBBBB 480~600: Scer.....: ttactggaaggaagcccacggtttcttttcagttggatggagagttataatcaagaagtatat-agattttgaatattgattaagcgagtaat-attgctatttcg-aaataatcgagaa Spar.....: t----ggaaggaaatc-atagtttcttttcagttggacagagagttataatcaagaagtatat-agattttgaatattggatagatataatat-attattatttcacaaaaaatcgagaa Smik.....: ctactggagcgaaatc-agagtttcttttcggttgg--tgagagttataatcaagaaatatat-agaatttagatattgagtaagtgagatat-tacctttttctatagtttaccgagaa Sbay.....: ctaccggaggaaaatc-atagtttcttttcagttggaaagagagttataatcaagaagtatattagattcgaaatattgaataggtggatttttactgatatttcacaagcaatcgagaa consensus: *** ** * * ********** ***** ****************** ***** *** * ****** ** * * ** * * ****** Smik_spli: DDDDDD 600~720: total....: ====== Scer.....: atcacgataataatacagcaaaaATGTCAGGTAACGGTGCTCAAGGTACAAAATTCAGAATTTCTGTATGTTAAAACCGAAACAAGTGGAAATACCCATTTAAATCACACAAGA-TGTCG Spar.....: atcacgataataatacagcaaaaatgtcaggtaacggtgctcaaggtacaaaattcagaatttctgtatgttaaaaccgaaacaagtggagaaacccatttaaaatacgcaaaaatgtcg Smik.....: atcacgataataatacagcaaaaatgtcaggtaacggtgctcaaggtacaaaattcagaatttctgtatgttaaaatcccaacaa-tggatacgcccattgaaattacacgaga-tatat Sbay.....: atcacgataataatacagcaaaaatgtcaggtaacggtgctcaaggtacaaaattcagaatttctgtatgttaaaatgcaatcaagaggacatatc-atccatattatacgaga-tatga consensus: **************************************************************************** * *** *** * * ** * * * * * * * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >====================================================== 720~840: Scer.....: TCAATCAACAAATAAAAAAG-TATATTCCCGAGACTGAATGTTACAATTGAGACAAGCAATGTTCAAGAAATGTGGGAGTCTATCA-ATGAATATAGTGGATAGCCAAAATG-GAAGATG Spar.....: ccaacaagcaactatgaaa--tatatttccggggaagaatgttacaaccaaaataattaatgtttaagag-tgtgatagtcagtga-atgaatatagtggggagccagaaagcggaagtg Smik.....: ccaacaagtaaatgtgacgtatatttttctgaggcagaatgtcatgatcaagatatttaattttcaggag-tgcgataatcaatac-atgactatagtgggtgggcatt----ggacgtg Sbay.....: ccaacaatggactatggaaa--atatttctaagacagagtatcgcaactggagtcttcgatgtttgagat-cataacaactaaaagcgcggatgtagtggatagtttgaaacgggagatg consensus: *** * * * ** ** * * ** * * * ** ** ** * * * ****** * * * ** Spar_spli: DDDDDD known....: ======================================================================================================================== 840~960: Scer.....: CCAAATTTATCCTTAATGGCTTCTCCATGCCTACATCCAGATAGCGAAATCTACTTCTGGGCCTTAAAGCGTTAAATGGATGCCTTTCCAACTGATTACTGAGAAG--GTTACTTTT-GT Spar.....: caggaatcattcttagtggtctttccatgcctgcatccggatagcaaaatccattttcaacccttacagcattaattaaatgc-tttccaactgacaacagagaaaacgttactttttgt Smik.....: cggagattatatctagcggctttgccttgcatgtatccaaaaaac---attta-tttagacctccaaagcatcgaacagtt----ttttaacagatgagagagaagatgttaatatgaat Sbay.....: tggaaaatattgcatgtaaatttgcaatgagcgcatct-gatgatagaataagcaaccggatcgtcgaaaaccaatcagacg----tttaaatgaaactctattag--gttaataaagga consensus: ** * * ** *** * ** * * * ** ** * * **** * Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: ======================================================================================================================== 960~1080: Scer.....: TAAGACTATTGGAAGTTCTATGCGGAATATACAAAC--TCCAAAAATGTCCAAT---TGTTGTAAGATCATTTATGTCCAAG-AAATATAT-TTGTGTTG----ATGGTTCCA--TTCTT Spar.....: tatgacatgtggaagttctatgtgaaatacagaagc--tcccagaa-gtcta------gttgtaggatcattcatgtccaaggaaatatatcttgtgttg----atggc-cca--tcctc Smik.....: tatggca--taagcactttaggtaagatgcataggtg-cccccaaacgtcta------attataagaacattcatgtctaaagaaatatataccctttt-----atggtctcg--tcctc Sbay.....: aagaagacaacagtcttttgttttaaacgtacgagtggtccataaacgccgagaacatcccatcgcgagctttttgtctaaagaaatatatgtttcatggagctattatctcaaatgcct consensus: * * * * * ** ** * * * * ** **** ** ******** * ** * * * known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: GCCAAGATAGGATTGATTTACTAACAGATTAATTG-TGTGCT-CATTTTTATGTGTCACTTACATTTT-TTTTAAATAGTTAGGTTTACCAGTTGGTGCTATCATGAACTGTGCTGACAA Spar.....: atcaagataggattgatttactaacagattaattg-tgtggt-cacctttatgtggcactcgcatttt-ttttaaatagttaggtttaccagttggtgccatcATGAACTGTGCTGACAA Smik.....: gtcagaaaaggattaatttactaacagattaattg-tgaggt-cactcttttgtgtcccttgtgttttatttttaacagttaggtttaccagttggtgccatcATGAACTGTGCTGACAA Sbay.....: attaatacaggNNcaatttactaacaaaNNaactgNtttggtNcacttttacgtgttccttatgtttt-ttttaaatagttaggtctaccagtcggtgccatcATGAACTGTGCTGACAA consensus: * * ***** *********** ***** **** * **** ** *** ** **** **** ** ******** ******* ***** ******************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =============================================================================>= 1200~1320: Scer.....: CAGTGGTGCCAGAAACTTGTACATCATTGCCGTCAAAGGTTCTGGTTCTAGATTGAACAGATTACCAGCCGCCTCTTTAGGTGACATGGTTATGGCCACTGTTAAAAAGGGTAAGCCAGA Spar.....: CAGTGGTGCCAGAAACTTGTACATCATCGCCGTCAAAGGTTCTGGTTCTAGATTGAACAGATTACCAGCCGCCTCCTTAGGTGATATGGTTATGGCCACTGTTAAGAAGGGTAAGCCAGA Smik.....: CAGTGGTGCCAGAAACTTGTACATCATCGCAGTCAAAGGTTCTGGTTCTAGATTGAACAGATTGCCAGCTGCTTCTTTGGGTGACATGGTTATGGCCACTGTTAAGAAGGGTAAGCCAGA Sbay.....: CAGTGGTGCTAGAAACTTGTACGTCATTGCTGTCAAAGGTTCTGGTTCTAGATTAAACAGATTGCCAGCCGCCTCTTTAGGTGATATGGTTATGGCCACTGTTAAGAAAGGTAAGCCAGA consensus: ********* ************ **** ** *********************** ******** ***** ** ** ** ***** ******************** ** *********** Sbay_spli: DDDDDD 1320~1440: Scer.....: ATTGAGAAAGAAGGTTATGCCAGCTATTGTTGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTGTCTTTTTGTACTTCGAGGACAATGCTGGTGTCATCGCTAATCCTAAGGGTGA Spar.....: ATTGAGAAAGAAGGTTATGCCAGCTATTGTTGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTGTCTTTTTGTACTTCGAAGACAATGCTGGTGTCATCGCCAATCCTAAGGGTGA Smik.....: ATTGAGAAAGAAGGTTATGCCAGCTATTGTCGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTGTCTTCTTGTACTTTGAAGACAATGCTGGTGTCATCGCCAATCCAAAGGGTGA Sbay.....: ATTGAGAAAGAAGGTTATGCCAGCTATTGTTGTCCGTCAAGCTAAGTCTTGGAGAAGAAGAGACGGTGTCTTTTTGTACTTCGAAGACAATGCCGGTGTCATCGCCAACCCAAAGGGTGA consensus: ****************************** ***************************************** ******** ** ******** *********** ** ** ******** 1440~1560: Scer.....: AATGAAGGGTTCTGCCATTACTGGTCCAGTCGGTAAGGAATGTGCCGACTTATGGCCAAGAGTTGCTTCCAACTCTGGTGTTGTTGTTTAAataaaatttccaagaaaaattcttttaaa Spar.....: AATGAAGGGTTCCGCCATCACTGGTCCAGTCGGTAAGGAATGTGCCGACTTATGGCCAAGAGTTGCTTCCAACTCTGGTGTCGTTGTTTAAataaaatttccaggaaaa-ttcttttaaa Smik.....: AATGAAGGGTTCTGCCATCACTGGTCCAGTCGGTAAGGAATGTGCTGACTTATGGCCAAGAGTTGCTTCCAACTCTGGTGTTGTTGTTTAAataaaatttccaaaaa---ttcttttaaa Sbay.....: AATGAAGGGTTCTGCCATTACCGGTCCAGTCGGTAAGGAATGTGCCGATTTGTGGCCAAGAGTTGCTTCAAACTCCGGTGTTGTTGTTTAAataaaatttcgaaaaaaa-ttcttttaaa consensus: ************ ***** ** *********************** ** ** ***************** ***** ***** ******************* * ** ********** 1560~1680: Scer.....: tcattatgtaaccttttaaaatattaatataaacaatccaagtcaagtcaat-gacatgagagtgcatatat----acattgt---tggagaatatttcagtgaagcggttgcctttttc Spar.....: tcattatgtaaccttttaaaatattaatataaacaatccaatccaagtcaat-gacatgagagtgcatatag----acattgt---tggagaatatttcagtgaagtggtagtttttttc Smik.....: tcattatgtaaccttttaaaatattaatataaacaatccaattcgagtcgtt-gacatgaaagtg-atatagg---acattgtactcgaagagtgttgcagtgaaggctgtgtttttgtt Sbay.....: tcattatgtaaccttttaaaatattaat--aagcaatacaactcaagtcatttgacatgagaatgcatgtatgttgacattgt---tggagaatgccacaactcggtagtagttcaatat consensus: **************************** ** **** *** * **** * ******* * ** ** ** ******* * *** * ** * * Sbay_spli: DDDDDDDDDD 1680~1800: Scer.....: tttgt---gaacatcctagagtaaacataatacataag-aatgatttttcctacaattacagaa-ctatattcttcaaaacattact-gta-gagggtcataaagatagg-----tttct Spar.....: gttgt---gaagattctagagtaaacataatacataaa-aatgatttttcctataattacagaa-ctatattctttgaagcactgcttgtg-tagagtcatgtc-ataca-----tgcct Smik.....: attgtttcgagtaaccataagagtactttctctattaccgataacagttcctccgagcaagaga-tcctcagctaacaaaaaaaaa--aca-tccgttgatttc--tttg-----taccc Sbay.....: tt------gaaggtttt--agtaaacgtaatataa----aatggtttttcctataattacaaaaacaagatattctaaaacatcattagtaagacgtttgtgtcggcaaagacgttgcgt consensus: * ** ** ** * * * ** ***** * * * * ** * * * * 1800~1920: Scer.....: ttatttttttcct-----ttgactcg---agaatccat---gctataagattg-ttaatca----------------------------------------------------------- Spar.....: ttattatcctcctctttcttgaagcg---ggaattcataatgcaataagattg-ttattca----------------------------------------------------------- Smik.....: ttattgttcctatgtcacgtaaataacaaaaaatttggttggagttgacgtga-ttattggatgctctagatcttttcagggcaggtaaaatgtacataatacgtaaaaaaattcttctt Sbay.....: tcattatttatttatt--ttgattgt---gaaagttacggtgcaataatactgactattcga.......................................................... consensus: * *** * * * * ** * * * ** * 1920~2040: Smik.....: ataattacaaaacaagattctttgaaacatcattaatagaaagtcatgcccattttagatagttcgtcataaatgtgtttcttattcttggtttttattcctgggacgtaggaatttata Smik_spli: DDDDDD 2040~2061: Smik.....: atactatgagactagtaatca { alias......: ['GLC7', 'CID1', 'DIS2'] chromosome.: 5 description: protein phosphatase type I end........: 433954 exons......: [(1, 177), (703, 1464)] gene.......: GLC7 introns....: [(178, 702)] length.....: 1464 name.......: YER133W plength....: 488 start......: 432491 tdist......: 142915 type.......: ORF up.........: 1 } Scer: 16 donors and 6 branches Spar: 10 donors and 7 branches Smik: 6 donors and 0 branches Sbay: 17 donors and 6 branches INTRON SPLICING FOUND!! [ ->[('Scer', 2324), ('Spar', 2324), ('Sbay', 2324)] ->[('Scer', 3229), ('Spar', 3229), ('Sbay', 3229)] ->[('Scer', 4908), ('Smik', 4915), ('Smik', 4904)] ->[('Scer', 361), ('Sbay', 361)] ->[('Scer', 1965), ('Spar', 1965)] ->[('Scer', 5197), ('Spar', 5197)] ->[('Scer', 6971), ('Spar', 6971)] ->[('Smik', 213), ('Sbay', 213)] ->[('Smik', 1604), ('Smik', 1608)] ->[('Spar', 6221), ('Sbay', 6223)] ->[('Sbay', 455)] ->[('Sbay', 933)] ->[('Sbay', 995)] ->[('Sbay', 3781)] ->[('Sbay', 4611)] ->[('Sbay', 4761)] ->[('Sbay', 5742)] ->[('Sbay', 5867)] ->[('Sbay', 6082)] ->[('Sbay', 6344)] ->[('Sbay', 6934)] ->[('Sbay', 7341)] ->[('Scer', 293)] ->[('Scer', 1153)] ->[('Scer', 1433)] ->[('Scer', 4668)] ->[('Scer', 5472)] ->[('Scer', 5822)] ->[('Scer', 6179)] ->[('Scer', 6768)] ->[('Scer', 6837)] ->[('Smik', 5143)] ->[('Spar', 1734)] ->[('Spar', 4203)] ->[('Spar', 4504)] ->[('Spar', 6508)] ] [ ->[('Scer', 2848), ('Spar', 2848), ('Sbay', 2848)] ->[('Scer', 3986), ('Spar', 3986), ('Sbay', 3986)] ->[('Scer', 4371), ('Spar', 4371), ('Sbay', 4371)] ->[('Scer', 3708), ('Spar', 3708)] ->[('Sbay', 4428)] ->[('Sbay', 4836)] ->[('Sbay', 6414)] ->[('Scer', 42)] ->[('Scer', 1755)] ->[('Spar', 194)] ->[('Spar', 1256)] ->[('Spar', 6375)] ] 0~120: Scer.....: ttttaaaaactttatgctttcacctaattataga--aacgcgtactaatgttt-tt-tgtta------ttgaagaaactggaaatgactaaagaa--tactcaggcaacgatgagcatag Spar.....: -tcttaggtctttttg-ttttacctaattatattt-aacgggtaataatgttg-ttatattt------ttgaaggaactggaaatgattaaagaa--tacttaggcaacgatgagcatag Smik.....: .tattaggtcttaacgctttcaccttgttatagtactgtgcgcagtaatatttcttatatta------gtgaaagaactagaactaaacaaatac---acttagacaacgatgagcataa Sbay.....: -cagtaaaacgtaaaggttctatgtgccaatgttt-cgtgagggttttttttt-ttttttcagatcaatgaaaagagttggatatgactatagtaattttttaaacaacgatgagcataa consensus: * * * * ** * * ** * * * * ** ** * * ** * * ** * * * * * * ************** Scer_spli: BBBBBBB 120~240: Scer.....: ccaaaaaaaaaaaaaaatttgttaaaagtgatactggtaactttaatacaatatccaaa--gtttatgatatcaagttggaaacggtgtcgatgtggact--ttgttagaggttaatctg Spar.....: ccaaaaaaaaaaa-----ttgttagaagtaataatggtaacgttaatacagtatccaaaaagttggtaatat-gaattaacaatggtggcagcgcgaact--cagttagatgttagcctg Smik.....: cccaaaaggaaata--ttgaatgagaagtgatgaaagtaacgtcaatacaatatatcgaa-gttgaaagtttgtaattagaagtgttcgcggcgttaagt--cagcgagacgt-aacctg Sbay.....: cctgagaaagtcta---tgagtctaagagaatgttaatgacgccgatagaa-accaaca--ggtagtaatgcaggattgtaaagcgttgtagtgttaagtatcaatgagacgttagcctg consensus: ** * * * * ** * ** *** * * * * * * ** * * * * * *** ** * *** Spar_spli: BBBBBBB Smik_spli: DDDDDD Sbay_spli: DDDDDD 240~360: Scer.....: tatttgtgac-tgggctctgccaaacttactatcttctattatctaggctcaagtaagtaagatgaaaaaaagaaaaagaaaaaaaagcagaaaaaaagcagaaaaaacagtaaagtggg Spar.....: tatttggtac-tag-cactgccaaatttactatcttttattatttaagctcaaataagcaaggtgaaaaaaaaaaggcagaaaaaaagcagaaaaaat----agtaaac--taagcgggg Smik.....: tatttagtac--taggatagtcaaacgtattatcttttgttagctaagctcaattaaacaaattaaaaaaaaaaaaaaaaaaaaaaaagagataaaat----agtaaact---aagtagg Sbay.....: tgttccggaccttaatgttgcctag---agaatattttattatctaagc-------agaaaaacggaaaaaacagtgcaacgatggactgagtga---------------------tggg consensus: * ** ** * * * * ** ** * *** ** ** * ** ****** * * * * ** Scer_spli: DDDDDD 360~480: Scer.....: tgtgagtgcactggaaagc--ctgtgtaataagtttttgatgtactgtattccttgcgagtattatcacaaagctctactgtgtttgcactgtgggcgtatagggatatcgcgagggcaa Spar.....: ggtgaatacagttgaaaaatgctgtgcgataggttttcgatgtattatgtt---tgcgaatactattgaagtgctctactgtgtttgccctgtggttgtgtaggggtagcgcaaggacaa Smik.....: gccaggt-tacttgaaatcgcagttgcggcttgttcccgatatgctgtatcttgtgcaaacactttcgaagtgctttagtgtgtttgcactgcgagtgtgtaggggtagcgcaagggcaa Sbay.....: agtgagt---ctagcaaatgttatagcgactttttcttgtccctttctatattttgcaactaatatcgaggtgttttagttcggatgcaccatgagtacgta-----------agggaaa consensus: * * * ** * ** * * * * *** * * * * * * ** * * *** * * ** *** ** Scer_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 480~600: Scer.....: cgcaaaactagcaagatacacatattccatacattaaagcggtaattttt-agtagttaatttcgaaatttcaaacccggcaatgatacgcacatt---aagaaaagggaaaaaaaaaag Spar.....: cacaaaactaggaagaaacacatattccatgcattaaagcggtaattttttagcaactaatttcgattttttaagcc-ggcaatggtaagcacgtc---agaaaaaggaaaaaaagaacc Smik.....: cctgagactaagaagagacatatattccatgcattaaagcggcaatttttcagcaactaatttcaat-tttctaatccggtaatagcttaaacatagcaagaaaaaagaaaaaaagaaac Sbay.....: cgtaggaataagaagaggcatatattctatgcattaaagcggtaatttttcatcatctaatctcggttttgctgattcggc------atgaactta---aaaaaaaaagagcaagatgac consensus: * * ** **** ** ****** ** *********** ******* * * **** ** ** ** ** * * **** * ** 600~720: Scer.....: aataa----attggccatagaaaaattctgttatccactagacagaagtttgcgttccatactgtcagaggtggc--attttacataacaatagtgacaaaaaataaa-tttcagaagga Spar.....: aaaaa----tagctacacggggaaatgatgatatcca-tagacacaagtttatgttctatattatcgatgagggc--gttttaaataatagcagtgaccaaaaataaaatttcagaagga Smik.....: aaactaagttaggtacgcagaaaagggataataatca-tggacacagg-ttacgttccatactactagacgacgc--atctttaac--caactagtataaaaagtaaaatttcagaagga Sbay.....: ataca----tagatatgtaagagaattatg------ggtaagca-agacttgtgtcgtgtggcactaaggtaggttagtatagtaatatagccgctaaaaaaataaatttttcagaagga consensus: * * * * ** * ** ** * * * * * * * **** ** *********** 720~840: Scer.....: aggcaacataagtttttctaatcctaaaatctttcgattttgtatcagagattgttcacgctaatgtcattcatcatagtagatcatttatctttcactgcggaga-agtttcgaacgc- Spar.....: aggcaacataagtttttctaatcctaaaatctttcgattttgtatcagagattgttcacgctaatgtcattcatcattgtaaattatttatctttcatcgcgggca-agtttcgaacgc- Smik.....: aggcaacataagtttttctaatcctaaaacctttcgattttgtatcagagattgttcacgctaatgtcattcatcatagt--gtttttcatttactcctgcgagtt-agcttcgaacgc- Sbay.....: aggcaacataggtttttctaatcctaaaatctttcgattttgtatcagagattgttcacg-taatgtcattcatcatagtaaattattttgatttacttgcgcgtacagtttcgaacgcg consensus: ********** ****************** ****************************** **************** ** * ** * *** ** ********* 840~960: Scer.....: cgaaa---catgcgcaccaacttt--------------cacttctacagcgtttgaccaaaatcttttgaacagaacattgtagggtgtgaaaaaatgcgcacctttaccgctagcccaa Spar.....: cgaaa---tatgagcacccatttt--------------cacttctacagcgtttgaccaaactcttttggacataatgtcgtaggatgtgaaaaaatgcgcacctttaccgccggtccaa Smik.....: cgaat-ttcgtaaccggcgaatcccgcacacttattttcacttctactacacttagccaaacacttttgggcagaatgtcgtagggggtgaaaaaatgcgcatctttaccgcaggtccaa Sbay.....: cgaaaacgtatccgcggaatcttttgcggctttg----cacttctacgatagtttgtcaaatgcttttgaacaaatttccgtagaacgtgaaagtatgcgc--ttttaccgctggtccaa consensus: **** * * * ********* ** **** ****** ** * **** ****** ****** ******** * **** Sbay_spli: DDDDDD 960~1080: Scer.....: gagggcactacaaaatctagagttgtacttcaaacgtacatgtaatcaccttgtatatactcgaaagaaaacatcaagtttctgtataaatatgagtgaaagcataatcatacattatct Spar.....: gagggcactacaaaactcaaagttacttctcaaatgaacatgtaatcatctattgta---------------atcacctt--------------------------attatacattgtta Smik.....: gagggcactacaaaacttaaaatctcttttcaaatcagtaactgatgactctatc-----------------atcaagtagcc----------------------tatccattcgaacgt Sbay.....: gagagcgttataaaattcgaaattttactcgaactgcatgtgtagtagtcctgaatct--------------ataaaaagactgaa--------------------atcgcttaagtcgt consensus: *** ** ** **** * * ** * * ** * ** Sbay_spli: DDDDDD 1080~1200: Scer.....: tttcaaagatgaagagtgggtgaattttgagataattgttgggattccatttttaataaggcaataatattaggtatgtagaaagtactagaagttctcctcgaggatttaggaatccat Spar.....: ctcagcagaagagg-------gtatt-----ataactgtc---atgtaattgttagttaaaccatgg--------------------ccagacttcatccttg--------------cat Smik.....: gtcagactacaaggaa-----gcattg------aaatgat---atataaccattcataaaagcatag--------------------ctaggctcactctttc----------------c Sbay.....: ctcagaacaagagcgcttagtagaatgt---gttagt-tcaaaaactcatttacggcacgtaggtg---------------------caactgtcccttttcg----------------- consensus: * * * * * * * * * * * * * * Scer_spli: DDDDDD 1200~1320: Scer.....: aaaagggaatctgcaattctacacaattctataaatattattatcatcattttatatgttaatattcattgatcctattacattatcaatccttgcgtttcagcttccactaatttagat Spar.....: aaaat----------------catggtt-tgtag-----------------ttgtgtattaacatc-----------------------tccttgcttgctggccgttacca-------- Smik.....: aaac-----------------caccatt--acgg-----------------ttgcgtagtagtatt----------------------gtatttccactgcagaaggc------------ Sbay.....: aaaga----------------cttagtt--aaga-----------------ttatgaggtgttttctcc--------------------ttttttcttgctagaggttcgaa-------- consensus: *** * ** ** * * * ** * * Spar_spli: BBBBBBB 1320~1440: Scer.....: gactatttctcatcatttgcgtcatcttctaacaccgtatatgataatatactagtaacgtaaatactagttagtagatgatagttgatttttactccaacaaaagaattacagtcagtg Spar.....: ------------------------------------------------------------------------------------ctgatttt---------------------------- Smik.....: -------------------------------------------------------------------------------------taatctc---------------------------- Sbay.....: -------------------------------------------------------------------------------------ctatgtt---------------------------- consensus: ** * Scer_spli: DDDDDD 1440~1560: Scer.....: gctgtttgctgacatttcattgcttcccttacaacctgatttccattcgagttgaaaggttgagaaaaattgc-aagacttctctctcatctacc-ttccccttttctt--gaagacaa- Spar.....: -------------------------ccctcacaaattagttttgattcgaattgaaaagttgagagg--ttgc-aagactttttttccatctact-ttttctctatttttggagaacaa- Smik.....: ----------------------ccttccctatagtaaagatttcacctacattgcaaggttttggaag-tagc-gagacttcgctaatatgcacagttgtctatatat---gagggcaat Sbay.....: -------------------------ctcttacgaccgagtttacttt---gttaaatgcctagcaaggtttaccaggactttccctccaagtatt-tactctatcttt----aagaaag- consensus: * * ** ** * * * * ***** * * * * * * * * * 1560~1680: Scer.....: ggtga-gagacaatt-tagtactaaagctttt-gcggttg-ttattcaattgaggtagatacct-----ggcaaaacatttc---ttgtgagcac---------aacctcaattaaa-gt Spar.....: ggtga-aagacaatt-tagtactaaacctttttacggttgattattcaattaaagcaggtaccc-----gatagaaaacttc---taatc-gtac---------acgcccaattaaaagt Smik.....: ggtgaaagtacaaatgtggcaccaagacttca-gccgttatttggtcagttaa-gtagacaact-----gatatgagacttatgattgtacatatc--------cgatcNaatNaNa-NN Sbay.....: ggtaatgttgtggat-atacagtgtaccggtt-gccttccatttctagattgaggtagagattgcgggggggggaagatctaca-ttatgcgcacgttattgtaaaccacagcagcgctt consensus: *** * * * * * * ** * ** * * ** * * * * * * * * ** * Smik_spli: DDDDDDDDDDD 1680~1800: Scer.....: tagacaagtaggtgca-ctattggttgcttgtt-ggctcatctcgttgagga----a--tgtaataactacttgttattaacctg-tttttgtgccatctatagtgg-agagcttattgc Spar.....: tggacaagtaggcgag-ctattggttgcttatt-ggctcatctcgttgagaggtgca--tgtaataactttttattttcaactgc-tttctatgtcgtctatattaa-aaagcttactac Smik.....: tNgNtaNNNaNatataNtNNNagttNNcNtNNNNgNNtNaNNNNNNNaaNaNaNNgNN-NNtNNtaNttNNNNatNattNtNtaNNtNNNtgtaNNNtcNNtNNtNNNNNNgNtNNNNNN Sbay.....: ttggtgtgtagatacggttcctggttgcctatttggctcatgttgttatgggtcccgactgcaaaaccttcatgtcattttctaaatctctgtctcatccaggatagcaggaatcatatc consensus: * * **** * * **** * ** ******* * *** * ** ** * * * * * * * * * * * ** * * * * * * Scer_spli: BBBBBBB Spar_spli: DDDDDDDD 1800~1920: Scer.....: aatttgttttt-tatttcttgactgca-tatatcagt-ctttgacaggctgcatggg-gatgacagtta-gaaactagccaaattaccccttatgtagataacaatcattgcttattcgc Spar.....: aattaatttttctattcattgactaca-tatattagt-ttctgccaggctgcatgag-gatgacaagtacaaaactagccaaattaccccttatgtagataacaaccattgcttattcgc Smik.....: NattNNNctNttNNNttaNcaatNNNNNNNtNNcagcNttccNcNNNNNtNNatNNNNgNtNNtNNNNNNNNaNNtNaNcNNNtNacNccNtatatNgataNNNNNNaNtNNtNNNNNNN Sbay.....: gatttgtgtatatattctcaaaataaaatacagcaccactctgtcgtgtttcttgga-aatatcagccaggaatgtagcctgtttaccccttatatagataacactcattgttaattcgc consensus: *** * * * **** * * * ** * * * * * * * * ** * ** * * ** ** ** *********** ********* ***** * ****** 1920~2040: Scer.....: tcttcccccattttttttcttgctcttgctgttttttcttttagcgttcgtttcaaggaacaaga-gagggaaaaa---aaaatcaaaagtagaaaagaagaagaaaaaaacaacgtaac Spar.....: tcttcccccattttttttcttgctcttgctgttttttcttttagcgttcgtttcaaggaacaaga-gagggaaaaa---aaaatcaaaagtagaaaagaagaagaaaaaaacaacgtaac Smik.....: NNNNcNNcNaNttNNtNNNNNNNNNttgNNNttNNttcNNNNaNNNNtcNtNtNaaggNaNNaNaNgaNNNaaaNaNNNaNaaNcaNNNgtNNaNNNNaagNNgNaaNNNaNaNNNtNaN Sbay.....: tcttcccccattttttctcttgcccttgctattttttcttttagctttcgtttcaaggaacaaga-gagggaaaaa---aaa-tccaaagtagaaaagaagaagaaaaaaacaacgtaac consensus: **************** ****** ****** ************** ************************************ ** ********************************** Scer_spli: DDDDDD Spar_spli: DDDDDD 2040~2160: Scer.....: acaagttaacaccacaactgaaaaaaaaaa-taagaggtgaacgaacgagta-actggggagaggaaa-gcagatt-accacaatatacattcaaattaaagaaATGGACTCACAACCAG Spar.....: acaagttaacaccacaactgaaaaaaaaaagcaagaggtgaacgaacgagta-actggggagaggaaaagcacatt-accacgatatacacttaaattaaagaaATGGACTCACAACCAG Smik.....: aNNNNtNaNNaNNNNNaNtgaNaaNNNNNN-NaNNagNNgaaNNaaNNagtaNaNtNNNNNgNNgaaNNNNNNaNtNacNNNNNNaNaNNNNtaNatNNNagaNNNNNNNNNNNNNNNNN Sbay.....: acaagttaacaccacaactgaaaaaaaaaagcaagaggtgaacgaacgagta-actggggagaggaaacgcagact-acaccaatatacacttagattaaagaaATGGACTCACAACCAG consensus: ****************************** ************************************ *** * **** * ******* * * ************************* 2160~2280: Scer.....: TTGACGTTGATAATATCATCGATAGATTATTGGAAGTAAGAGGATCTAAACCTGGTCAACAAGT---TGATCTAGAAGAAAATGAAATCAGATACTTATGTTCGAAAGCCAGATCTATAT Spar.....: TTGACGTTGATAATATCATCGATAGATTATTGGAAGTAAGAGGATCTAAACCAGGTCAACAAGT---TGATCTGGAAGAAAATGAAATCAGATACTTATGTTCGAAAGCCAGATCTATAT Sbay.....: TTGACGTTGACAATATCATCGATAGATTATTAGAAGTAAGAGGATCTAAACCAGGTCAACAAGT---TGATCTAGAGGAAAACGAAATCAGATACTTATGCTCAAAAGCCAGATCTATAT consensus: ********** ******************** ******************** ******************** ** ***** ***************** ** **************** 2280~2400: Scer.....: TCATAAAGCAACCCATTTTACTAGAGTTAGAAGCCCCAATTAAAGTATGTTAATGTTGAACTTCGCAGTCAAGAGATAGAATGCCTAGAGCTT--------CAGGTGTTT---TATGTGT Spar.....: TCATAAAGCAACCCATTTTACTAGAGTTAGAAGCCCCAATTAAAGTATGTTAATATTGAACTTCGCAACCAGGAGAGAGAATAGCTAGAGCCT--------CAGGTTTTT---TATGTAT Sbay.....: TCATAAAGCAACCGATTTTACTAGAGCTAGAAGCCCCAATCAAAGTATGTTAATATTGAACTATGCAATCAGAACCAGAGACAAGCAGGGTTTGTAAGAGCTTAATTTTT---TAAGTCT consensus: ************* ************ ************* ************* ******* *** ** * * ** * * * ******** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD known....: >=========================================================================== 2400~2520: Scer.....: TCTACTC-----CTGTTGCGGCAGTAAGATAGTTACAGCAGTTAT-TTCCGTTTGACTGAAAGAATTTACCAAGCAT--CTGATGTTAGCCTACTCATATGTCGAGAT--AGCCGAGATA Spar.....: TCTACTC-----CTGTGGCGGCAGCAAGATAGTTTTAACAGTTAT-TACCGTTGAACTGAAAGGATTTACCAAGGCC--CGATTATTAGCCTGCTCATATGTCGAGAT--AGCTGAGATC Sbay.....: TCTCCTC-----CTGTGCCAGTTCCAAGACAGTTTTAAGGATTAT-CGCAGTCGAATTGAAATAATG-ACCAAGTTTTACCACTATTACGCTACCCATTTGCCGATAT--AGCCAAGGGG consensus: *** ************ * * **** **** * ***** * ** * ***** ** ****** * * *** ** * *** ** *** ******* ** known....: ======================================================================================================================== 2520~2640: Scer.....: ATGTGTGTG-TTTAGCTCTTCATTTTTCTATCTTATTAGGCATTTTTTTACCAAGATTTCCTTATGTTTTGTATCATCATCCGGCCGGCGCCTCCCATATTCAGAAAAA---TCCCCCTT Spar.....: ATGAGTGTGGTTTAGCCCTTCATCTTCCTAGCTTATTAGGCATTTTTT-ACCAAGATTTCCTTATGTTTTGTATCATCATCCGGCCGGCGCCTCCCATAATCAGAAAAA---TCCCCCTT Sbay.....: ATGGGCGTGTTTTA--CGCTTGTTCTTCTGGATTAC-AGGCGTGTCTCAACCGAGATTTCCTTATATTTTGTATCA---TCCGGCCGGCGCCTCCCATAATAAAAAAAAAAATCCCCCTT consensus: *** * *** **** * * * ** *** **** * * * *** ************ ********** ******************** * * ***** ******** known....: ======================================================================================================================== 2640~2760: Scer.....: GCTCACACTAAAAAAAGAAGGCATTTTTT-CGTTATGAAGAAAA-CGAATCTTTTTTTTTTTTGAGCCCGAGAGAAAGGTCGGACGAAAACCAAGAAATGTGGATTTGCAGAAGGCATTG Spar.....: GCTCACACTAAAAAAAGAAGGCATTTTTT-TGTTATGAAGAAAATCGAATCTTTTTTCTTT--GAGCCCGAGAGAAAGGGCGGACAAAAACCGAGAAATGTGGATTAGTAGAAGGCATTG Sbay.....: GCTCACT---AAAAAAGAAGACATTTTTTTCGTTATGAAGAAAACAGAATCTTTTTTGGGCCCGAGACAGA---AAAGGGCGGACAAAAGCCGAGAAATGTGGATCTGCAAGAGGCATAA consensus: ****** ********** ******** ************* *********** *** * ** ***** ***** *** ** ************ * * ****** known....: ======================================================================================================================== 2760~2880: Scer.....: GG-AGAAAT-GAAGCGTTTTTGACAGCAGTA-ATTGTTCTCTTA-AAGTCAACGGAATGAG-CTAG---ATTTAGTGACAAATTCATTTACTAACTT----ATTTTTTTCTATTTTTTTT Spar.....: GG-A-AAAT-AAAGAGCAATTGACATTAGTA-ATTGTCATCCTAGAAGTCAACGGAATGAG-CCAG---ATTTAGTGACAACTTCATTTACTAACTT----ATTTTATT---ACTTTTTT Sbay.....: CGCAGAAAC-AGAGTGCAATTGACACCCGCG-ATTATTGTCTTGGAAGTCTACGGAATGAGTCCAG---AATTAGCAGCGATCTTTTTTACTAACTTT---ATTTTCTTTATTTTCTTTT consensus: * * *** * ** * ****** * **** * ** * ***** ********** * ****** **** * * * *********** ******** ** * **** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 2880~3000: Scer.....: TTT-------TTTAGATATGTGGTGACATTCATGGGCAATACTAT-GATTTACT--ACGTCTATTTGAGTACGGTGGATTCCCGCCAGAATCTAATTATCTATTTTTGGGTGATTATGTC Spar.....: TTT-------TTTAGATATGTGGTGACATTCATGGGCAGTACTAT-GATTTGCT--ACGTCTATTTGAGTATGGTGGATTCCCGCCAGAATCTAATTATCTATTTTTGGGTGATTATGTC Sbay.....: TTTCTTTCATTTTAGATATGTGGTGATATTCATGGACAATATTAT-GATTTGCT--ACGTCTTTTCGAATATGGTGGGTTCCCACCGGAATCTAATTATCTATTTTTGGGTGATTATGTC consensus: *** **************** ******** ** ** ********* ********** ** ** ** ***** ***** ** ********************************* known....: =============>= 3000~3120: Scer.....: GACCGTGGTAAACAATCCTTAGAGACTATTTGTCTATTACTGGCTTACAAAATTAAGTATCCAGAAAACTTTTTCATTTTAAGAGGGAACCATGAATGTGCTTCCATTAATAGAATTTAC Spar.....: GATCGTGGTAAACAATCTTTAGAGACTATTTGTCTATTATTGGCTTACAAGATCAAGTATCCAGAAAATTTTTTTATTTTAAGAGGGAACCATGAATGTGCTTCCATTAATAGAATTTAC Sbay.....: GATCGTGGTAAGCAATCTTTAGAAACAATTTGTCTGCTATTGGCTTACAAAATTAAGTATCCAGAAAACTTTTTCATTTTAAGAGGTAACCATGAATGTGCTTCCATTAACAGAATTTAC consensus: ** ******** ***** ***** ** ******** ** ********** ** ************** ***** *********** *********************** ********* 3120~3240: Scer.....: GGGTTTTATGATGAATGTAAGAGACGTTATAATATCAAACTTTGGAAAACTTTCACGGATTGTTTCAATTGTTTACCAATTGCTGCAATTATTGATGAGAAAATCTTCTGTATGCATGGT Spar.....: GGGTTTTATGATGAATGTAAGAGACGTTATAATATCAAACTTTGGAAAACTTTCACAGATTGCTTCAATTGTCTACCAATTGCTGCAATCATTGATGAGAAAATCTTTTGTATGCATGGT Sbay.....: GGGTTTTATGATGAATGTAAGAGACGTTATAATATCAAACTATGGAAAACTTTCACAGATTGTTTCAATTGTTTACCAATTGCCGCAATTATCGATGAAAAGATTTTCTGTATGCATGGT consensus: ***************************************** ************** ***** ********* ********** ***** ** ***** ** ** ** ************ Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 3240~3360: Scer.....: GGTCTCTCACCAGATTTGAATAGTATGGAACAGATCAGAAGGGTGATGAGGCCAACAGATATTCCCGACGTTGGCTTATTATGTGACTTATTGTGGTCAGATCCAGATAAAGATATCGTA Spar.....: GGTCTTTCACCAGATTTGAATAGTATGGAACAGATCAGAAGGGTAATGAGGCCAACAGATATTCCCGATGTTGGTTTATTATGTGATTTATTGTGGTCAGATCCAGATAAAGATATCGTA Sbay.....: GGTCTTTCACCAGATTTGAACAGTATGGAACAAATTAGAAGAGTAATGAGACCAACGGATATTCCCGATGTTGGTTTATTATGTGATTTATTGTGGTCGGATCCGGATAAAGATATCGTA consensus: ***** ************** *********** ** ***** ** ***** ***** *********** ***** *********** *********** ***** *************** 3360~3480: Scer.....: GGTTGGAGTGAAAATGATAGAGGTGTTTCTTTCACTTTTGGTCCTGATGTAGTGAACAGATTTTTACAGAAACAAGATATGGAGTTGATTTGCAGGGCCCATCAAGTTGTGGAAGATGGT Spar.....: GGTTGGAGTGAAAATGATAGAGGTGTTTCTTTCACTTTTGGTCCTGATGTAGTGAACAGATTTTTACAGAAACAAGATATGGAGTTGATTTGCAGGGCCCATCAAGTCGTAGAAGATGGT Sbay.....: GGTTGGAGTGAAAATGATAGAGGTGTTTCTTTCACTTTTGGTCCTGATGTAGTGAATAGATTTTTACAGAAACAAGACATGGAGCTGATTTGCAGAGCCCATCAAGTTGTGGAAGATGGT consensus: ******************************************************** ******************** ****** ********** *********** ** ********* 3480~3600: Scer.....: TATGAATTCTTTAGTAAAAGACAATTGGTGACACTTTTCAGTGCTCCGAATTATTGTGGTGAATTTGATAACGCTGGTGCAATGATGAGTGTTGATGAAAGTTTATTATGTTCTTTTCAA Spar.....: TACGAATTTTTCAGCAAAAGACAATTGGTAACACTTTTCAGTGCTCCGAATTATTGTGGTGAATTCGATAACGCTGGTGCAATGATGAGTGTTGATGAAAGTTTATTATGTTCTTTCCAA Sbay.....: TACGAATTCTTTAGTAAGAGACAATTGGTGACACTTTTCAGTGCTCCTAATTATTGTGGTGAATTTGATAACGCGGGTGCTATGATGAGTGTTGACGAAAGTTTATTATGTTCTTTCCAA consensus: ** ***** ** ** ** *********** ***************** ***************** ******** ***** ************** ******************** *** 3600~3720: Scer.....: ATTTTAAAGCCAGCCCAAAAAAGTC-TACCA-----AGGCAAGCTGGGGGTAGAAAGAAAAAATAAatagattcacgtcctaaatcaaagtttaaaaaggaaaatacttattaacaagaa Spar.....: ATTTTAAAACCAGCTCAAAAAAGTC-TACCA-----AGGCAAGCTGGGGGCAGAAAGAAAAAATAAatagattcacgtcctaattcaaagtttaaaaaggaaaatacttattaacaagaa Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNaNaNNcatgNNcNNNNNcNaaNNttNNNNaN-NNNataNtNNNNNacNagaN Sbay.....: ATTTTAAAACCCGCTCAGAAAAGTT-TACCA-----AGGCAAGCCGGAGGTAGAAAGAAGAAATAAagagaatcaaactctaacccaaagttaaaaaag--aaatact---taacaaga- consensus: ******** ** ** ** ****** ******************* ** ** ******** ******* *** *** **** ******* ****** ******* ******** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 3720~3840: Scer.....: gagtagtagaagaaaaatacaagaa-acataaacgtagaaa----acttttagtc-aattctttaag-cgaagaatacgaaagaaacatcaagaaaacaaaggaagatgcaatcatcact Spar.....: gagtagtagaagaaaaatacaagaa-acataaacgtagaaa----acttttagtc-aattctttaagtcgaagaataagaaagaaacatcaaggaaagaaaggaagatgcaatcatcact Smik.....: NagNNNtNNNagNNNNatacNNNNNNNNttNaNaNNNNaaaNNNNNNNNNNNNNcaNNNNtNttNaNttgNNNNNtaNNNaaNNNNNNNNNNgNNNaNNaNNNNaNatNNaatNNtNNNt Sbay.....: gagtagtagaggaagaataggagaa-atataaaaatagaat----ttttttcatccaacccgttaagttgaagaatagcaaataaggaa-aaaaaaagaaagagtaattcaattgtcact consensus: ********** *** **** ****** **** ***** **** **** ** ** ***** ******** *** ** * ** *** **** ** **** ***** Sbay_spli: DDDDDD 3840~3960: Scer.....: cgtcatatacacaaataa--ttccctttagtgcaacaaaccgcgaaaaagcataagaaacataaa-aaaaatataaaaaaaaggagataataataagatgtgaaggatttgaattagtgg Spar.....: cgtcatatacacaaataa--ttccctttagtgcaacaaactgcgaaaaagcataagaaacataaa-aaaaatataaaaaaa-ggagataataataagatgtgaaggatttgaattagtgg Smik.....: NgNNNtNtNcaNaNaNNNN-NNNcNNNtNNtgNNNcNaattgNgNNaN-NcataNNaNNNNNtaNNNaaNNNNNNNNaNaaNgNNNNNaNNNaNaNNNNNtgaNNNaNNNNaNttaNNNg Sbay.....: cgtcatatatacaaaaaaaattcccttcacttcaataaaatgcgaaaa-gcatgagaaactcggggaaaaaaatggaataaagaagatagtaataacctgtgaaagatttgaataaatgg consensus: ********* ***** ** ******* * * *** *** ******* **** ****** ***** ** ** ** * ***** ****** ****** ********* * *** 3960~4080: Scer.....: aaaaa-tgataagtctacactattattattaacgaaatgcaattttcctttattt--tcttttattactattatcattactattattatta---gtattattatttttttact-tatttt Spar.....: aaaaa-tgataagtctgcactattattattaacgaaatgcaatttttctttattt--tcttttattactattatcattactattattattattagtattattatttttttact-tatttt Smik.....: NaNNaNtNNtNagtcNNNNNtgtNaNNatNNNNNNNatgNNatttNtNNtNaNNtNNNNttttNtNNNNNNNatcaNNNNtNttNtNNNNaNNaNNaNNattaNNtttNtNacNtNtttt Sbay.....: aagaa-tgataactctgcactactattattaacgaaaaata-tttttctttatttgtttttttattattattatcattactattattattattagtattattattttttatcaatttttt consensus: ** ********* *** **** ************** * **** ******** * ******** *********************** *************** * **** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 4080~4200: Scer.....: tatattaaactatgttaaattactatattattattttgtctaactctatattgaggctgt-ctttcgttgcactg---ttaagaatggtcacgtcttcctttggctttgaacc-----ct Spar.....: tatattaaactatgttaaattactatactattactttgtctgac--aatgttggggccac-ctttccttaaatta---atatgaatgaacatatgtccctt-aacttcgaacc-----ct Smik.....: NNNatNNaNctNtNttNNNNtaNNNtaNtattNNtNtNtNtNNNNNNNtattNNNNtNNNNcNNtNNNNNNaNtNNNttNNNNNNNNcNcNtatNNtNNNNNNNNNtNgNNNNN---NtN Sbay.....: tatactaaactatgttaaattactatattattattttatctgat--catactgaaattgt-ctttcttcacattaattttttggggtttttcatctttcttcacttttgatattgcgtct consensus: **** ********************** ***** *** *** * ** ** ****** * * * * * * * *** ** ** * 4200~4320: Scer.....: tttataaacaagttggcca---aatcatttagtcaat-cacgtcaacctgtcta-aaataaga------------caggtaaaaaag----aaaa------------------------- Spar.....: tttgtaagtaaaccggcct---aatcatctactcaag-catatcaccctgcgta-acatgagc------------cagtaaaaaaat----aaaaatgaaaaaactattggaaacaaaaa Smik.....: NttaNaNNNgaatNNNNNa---NNtNataNNNNNaNaNNNNNtNNNtNNNNNNNNNNacNNNtNNNNNNNNNNNNcNNtNaNNNcNNNNNNNaNNNNtNNNNgaNNNtN----NNNNNNN Sbay.....: tttgtcacaaaatagaatatatgataatatatagaaa-tagaagaatacaagct-agatacgcgcatcgcctttttagttacaaatattcaaataaaaaatgaatggtccccaaaaaata consensus: *** * * * * ** ** ** ** * * * ** * * ** * ** ** * Spar_spli: DDDDDD 4320~4440: Scer.....: ---tgccatctcctagaatcgaaccagggtttcatcggccacaacgatgtgtactaaccactatactaagatggcgacttttcaatggagaactgttgtattacgggct-cgagtaatac Spar.....: atatgccatctcctagaatcgaaccagggtttcatcggccacaacgatgtgtactaaccactatactaagatggcaactta-caacggaga------gtgtttc------------atct Smik.....: aNNtNcNaNNtNctaNaNtNNaNNcaNgNtNtcNNNNNNcNNNaNgNNNNgtNNNaNccNcNatNNNaNNNtNNNNaNNNNNtaaNgatNttNtNtNNNNNNNNatNNNNNtNaaNNtNt Sbay.....: aaatgccacctcctagaatcgaaccagggtttcaacagccacaatgttgtgtactaaccactatactaagatggcaggtttttgtataaatatttgtttgttgagtactactaattggtt consensus: ***** ************************* * ******* * **************************** ** * ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB BBBBBBB 4440~4560: Scer.....: cggagtgtcttga-caatcctaatataaacagtcttaggga-agtaaccagttgtcaaaacagt--ttatcagattaattca-cggaatgttacttatcttatatattatataaaatatg Spar.....: caaaatgttat-----accccaacattactatatttatcga-cctagaca-----taaaaca-t--gtatgaaactgtt-----ggaatgaaat---tctaatatcatctatttaatatt Smik.....: NaNNatNNtNNNtNNNaNNNNaNNNNNaNNNaNNNaNNNNaNaaNNgNNNNNNNNNNNNNNNNNNNtNttNaNaNNNNtNNN--NNNaNtcNatNNNtNNNaNNNNNNaNNttNNaNNNN Sbay.....: caatatgaatca---aatcaagaaataagtacagaaaagaataaaaatctattaattggcgagtagttatcatattgttggaacaagattctattaatggaagctgaagcgcaaggattg consensus: * ** * * * * ** * * * * * * * * * * * * * * ** * * * * * Spar_spli: DDDDDDDD 4560~4680: Scer.....: a-atcatactaagtggtggaagcgcggaatctcggatctaaactaattgttcaggcatttatacttttgggtagttcagctagggaaggccgggttttatctcatgttgttcgttttgtt Spar.....: atattataatatgcggtgcaagaggatgacataaagattgagaaa------cagtcatccaatctaatgga------agct--gaaatgcaaggattgata--atgtaatagg----ata Smik.....: NNNNtNtNNtNNNNNNNNNaNcaaNNNtNaaNNNNNNNcNatNaNNtNNNNNaNcaNtNcaNtNNNNtNNtNNNNtNNNNN---aNNNNNNNNNaNNNattttatatcactcagc--aag Sbay.....: atattgtaataggatcagtgaatgagaacatataaaagaggggaatcttcagtatgatttatatacataatattacaacgttaaaaataaatggaatcccaa-aagtcat-cattcaatt consensus: * ** ** ** * * * * ** * * * * ** ** * * * Scer_spli: DDDDDD Sbay_spli: DDDDDD 4680~4800: Scer.....: ataaggttgtttcatatgtgttttatgaacgtttaggat---gac-gtattgtcatactg--acgtatctcattttgagatacaacaagaaccgtatccttattttgtacttttgt--gt Spar.....: atgaa-tgacaacatataaaaagaaagaagaaataatat---tattattctgtagaatta--ttgattcccttttgtagattc--ctatatcctcgaggagaacttctagtatatt--ct Smik.....: gcgctctggctaacttcttgacggattacgggctggca---------------agacttgatatagagctaatcagagaaaa-----atcggttgatggctacttactattgtaccaagc Sbay.....: ttgaaggtcaataatgcttgacaacttattatctatgttctgaattattctgtaccattgggatccatataactaatgagcgtatgtttagacatacctctcttttatattttaagaagg consensus: * * * * * ** * * Sbay_spli: DDDDDD 4800~4920: Scer.....: aaatatttaatgaattgtt-tgagcaattacgaaattgtttggaatccaaaggaatcttcagtaaatttgttggaatagaaattaattggcttctattaat-cagtgcgtatgttactgg Spar.....: atatacctaat--attat----agccttta-gtaacaatt--aaatcccaacaattatctaat-----tacccacata-attctcagaaacacgtacgaaa-caattgtcatgaaactga Smik.....: tgctgatccagatattattggagttaatagtttgacggcacagaagcttctgatttgtaccgaccgcgtactacctgaagcatatgtaagcttctatgctcatggtgagtacgctgtacg Sbay.....: aactgcttatttcttgattattactacttactagactactaattatcgacagcattat-cactctttgtgcttcaccttccattaaattcgatg-acggtt-tggatcttgtgttacagg consensus: * * * * * * * * * * * * Scer_spli: DDDDDD Smik_spli: DDDDDD DDDDD Sbay_spli: BBBBBBB 4920~5040: Scer.....: tatattgggaatgggtgaacaatttgagacagttgttgga-ttccattgttgttaaaggctgcaatattacgtagaacgaatatgctgcaa-ttctcctcgagaaaaaataggaatctac Spar.....: -------gaattaggcggata--tttagataattgttggaattccattgttgctaaaagccataat--taggtatacagaacatactagaagttctcctcgaggat--cttggaatccac Smik.....: t-----ggaggttggtaaaccg-atgagcagctagttaatcgttttgcttatttgggcactgacttccctacatatttcactagattgga--tttacactgac-----tctatgaccagt Sbay.....: tct--tctaattcatgtcattttttaacattgtatatgataatatcctacttacatgaataaatgtcctaatttgtccaagtaccgtgtgaacgatggttga------ttcctgtccgac consensus: * * * * * * * * * * * ** * Smik_spli: D 5040~5160: Scer.....: aaaaggcgaatcgatagctctacataataatgttactttatcttcttcc-ttttatactttgtcattctttttcttattac-gttatcagttcttgcatttcaggtgctattatatttgg Spar.....: aagagg-gaattgataattctacataacaatagtcttatttcttctttcgttttatatgttgtagttcattgtcctattac-atcatcaatccttgcgtctcaacttccactaaatccga Smik.....: tacaatagaacctgcctcgagtcttcgtaaacttggcaactagcctgacaccataaatcacggaactacatttaggtgtactattactatagcatggtttgcagttaagtatataaagaa Sbay.....: aatctgaaacgaggtaaca-tacaaaacg-tatttcaaacttccccaaagtttaccataacgggcacatacaaataaccac-gtctatagaaccaaaattagactggatacaaaagacaa consensus: * * * * * * * * ** * * * * * * * Smik_spli: DDDDDD 5160~5280: Scer.....: tgactatttctcaatctctatgacatcttcttataccgtacgtgataatataatagtgatatgaataccagtcgatagacgatagttagttgggttttatttaacaaataggttc--ccg Spar.....: tgactgtttctcaatctttatgtcatcttcgtacaccgcatgtgataatatactagtaacatgaatactagtcaatagatgata-ttag---aatttcattccaacagtaga-------- Smik.....: taagcgtgactcagagactaa-----tttagagtagggagagtgttaaagtatctgtagcaagattgtcgaatcattaacacattgtaac--ggacttagcaagcaattagacgtgatga Sbay.....: atgcaaaatctaatgttttaa---atctgagatttttaaaagtttcgataagaaggtttgccatctattatgccgtagataata--gaactaagtttagtatggctagtcga-------g consensus: ** * ** * ** * ** * * * * * * * * Scer_spli: DDDDDD Spar_spli: DDDDDD 5280~5400: Scer.....: agaaaaagttctaatattttctatttacccaatagtactaccccatcaaataatagaatcatagtaattatcagtaacaaaatatacagccctcatcagcaatgtagtctcaacaactgc Spar.....: agaaaatctgcttttattcttaatt-----aatactacaacc----------------------taactactacttataaaa--------------------------------aact-- Smik.....: attgaccctaccatgattgtcgattca............................................................................................. Sbay.....: gttgagcggtcatctgttgtacaataataagcgcctacgctccctccg-----------ttgtctggttcgcggtagcgcaaa---------ccgttaccgaccggtccgtcgtaacttg consensus: * * ** * * * *** * * * * ** **** 5400~5520: Scer.....: ccccagaattcaccgcttttcttcgatcgtcaatatggaagtgaggaaactcgggctcacttaaaacgaactgcatgttttaaaatcattatccatgcaagtgtggcataaaagccgtag Sbay.....: acagcgaactg----------tttgatgagtaatcgaatccttca-----ttaggtcctaatagtacggtgctgttcatatgaagatttagccaacatgcgtgaagaagtgcatcctcac Scer_spli: DDDDDD 5520~5640: Scer.....: ttagatatatctcaaacgcgcaaaaagttaaaaagaaagccctgtagggggctcgaacccctaaccttatgattaagagtcatacgcgctaccgattgcgccaacaaggctct--tattg Spar.....: ---------tctctaacgcg--aaagctaaaaaagaaagccctgtagggggctcgaacccctaaccttatgattaagagtcatacgcgctaccgattgcgccaacaaggctct--tattg Sbay.....: cttgg-aagtctagaatacgttccacattaggtagtataacaactaaaccactttcattggaaattttgtattt---ggctacttccgttcccaggcaattgatcaaggctgtcatatcg consensus: *** ** ** * * * ** * * ** ** * ** ** * ** * * ** * ** * ******* * *** * 5640~5760: Scer.....: ttgtttttctgattcttatgga--gggattagagagcaaagtaaagtacttatatgtaatttaacattcgatgaaccgcggataattagtaatatgaaatgggtgatgttcataatgtag Spar.....: ctgttttcctgtctttt------------taggg----aagtacaataaatacgtat------------------ctgtggataat--------------gagttagatttgagatttgg Smik.....: ...........................................................................................atatctgcggcgctat-catgagatctag Sbay.....: ctctctgtcagaggcgtataatccagggcagctgcagttagtgcagctaatgcagctatcactgtaagggctttcatgtagatatttca-actgattttcttgttaagtgagctatgtag consensus: * * * * * * * *** * * * * **** * * * ** * * Sbay_spli: DDDDDD 5760~5880: Scer.....: agaatgtggattttgatgtaattgttgggattccattgt-gattaagg--ctataatattaggtatgtaga-tatactagaagttctcctccaggatttaggaatccataaa----aggg Spar.....: -----gtgaataattagataattgttgggattccattgt-tactaaaga-ctataat--taggtatacagaatatactagaagtttttctcgaggatatgggaatccacaaa----aggg Smik.....: -----atgaatttgaagctaattgttaggattccattattgatagagacaatattattctgtattcacagagtttactcgaagttctcctcgaggatatagga-tccgcaaa----agag Sbay.....: -gttctagagtgcctatttgacggtgcatacttgcttaaatacgaggag-tcgttgtcaatgcactgcagt-catcctcctcgtttttctcgtaaatatgtcattgcgtgagtcatggag consensus: * * * * * ** * * ** * * * ** * ** *** * *** ** * * * * * * * Scer_spli: DDDDDD Sbay_spli: DDDDDD 5880~6000: Scer.....: aatctgcaattctacacaattctataaatattattatcatcgtttt-atatgttaatattcattgatcc-tattacattatcaa--tccttgcgtttcagcttccattgaaaacgatgac Spar.....: aatcgatagttctacatagtgttattaccttatcttctttcttttt-atatgttgtcattcatt-attc-tattacattatcga--tccttgcatttcagcttccattagattggatgac Smik.....: aatcgaaaattctacataataatgtacttgtttcttcttttgtttttatacgttatcactcatt-atcc-tgatacattatcaa--tctttgcttttcatctttcactgaaatcgacgac Sbay.....: acccttgttttcctcgtaaatttgccattgcatgagtcatgggtat-cctcgacagtacagggccgtaagcagctcatcattgagatctctgcagtcgatctactgtaaagtaccagcac consensus: * * *** * * * * * * * * * *** ** * ** *** * * ** * ** 6000~6120: Scer.....: tatttctcatcatttgcgtcatcttctaacaccgt-atatgataatatactagtaac--gtaaatactag----ttagtagatgatagttgatttttattccaacacataattagaattt Spar.....: tgtttctcaatctttatgccatcctcttacactgc-gtgtgataatatactactaaataggtgatattagaatttcattccaacacgtctcgtatacattc--acgtgtgattgtacct- Smik.....: tgtttctcaatctttat---gtcatctaacacctttatatgataatatactagtaat--aggaatactac----ttgatagatggtagtcggttcatgttccaacacat--ttctcact- Sbay.....: acattctcaaaaattac--catcatc-aagaacat-agttgttgaaacactttaagcgatttattacaga----gaaggagagtatg-ttgtgattgactcttgataatgacttcaagc- consensus: ****** ** ** ** * * ** * * * *** * ** * ** * * Sbay_spli: DDDDDDD 6120~6240: Scer.....: aaaaggcagtattggtgaagattgaacatt---aattttcttatgcttatataatagaggtatgaac---acacgcatataggatcattatatagttatggctagtattatcatggctct Spar.....: -aattgtagaatatgaaatatacgagcaattcagacagtactacaaccaggttaaggatgtatcgattggacattggggtggtagctatatatatatatatgtatgagtaatttaagtca Smik.....: -----gttgaaattaccttgatcaattatc----gcattctatcaattatttcaaaa----tccacctttatctccaaagaaacatgtttgaactgcctgt-tactaccaatttgtacat Sbay.....: -atcaatgatattgtcacaaatcgagaaca---aaactaagcac-ctaaagtagcaaggaccttggctatatttaatcgaggtggtacacaaaatttataaatgtaagtagttaatatag consensus: * * * * * * * * * * * Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 6240~6360: Scer.....: ggtaatttcatacattt-gatgtcgtcacgactcatattat-ttgctcatatatataacttcctcatatatat-aacttcctcatcaagttca---attaatagatctttagttca-aat Spar.....: tcagattaagcatact--gtaactacctggtctgttattatattggttatccttaagatgaattaatctgtgtgaatttttttataaatcttatatattataagaaggttaacatg-tat Smik.....: tgcaaccctgctgatctaaaaaccaataaggaatggaatacttttcccgcacaggaagaacggttttctgggaaaaaaatttgcttt-ctcgaggggccaccaa---tttaccttcaagc Sbay.....: cgaacgcatatagatgg-ggtttgtttaaaaattagattagatacacaagataaaagaaataactagtgactgggatttacatctcc-ttcaacgttttgataagtgagtatcttacgat consensus: * * ** * * * * * ** Sbay_spli: DDDDDD 6360~6480: Scer.....: tcagaacattctga--atttgtcgttta----------acatttccttctgcaagagtacattcacactggaacgtatacgaggtgtaaattggtatac-tgttggaataa---aaacca Spar.....: tctcattaatacaattactaattatctacaagaagatcattttttcttcattgatagtaactgctaatatcaacagatcactaatagacctagccaaacatggtgtaa-gc---atacca Smik.....: cctcaaataaagaa--atttgttacata----------acctattcttttat-atactcaacacatttatt................................................. Sbay.....: acataataaaggttgaagccctcatcttccgtgagagtgcaaccaagatcactttactaactatacaaacagaatcatctctatcgtgcaatgccagacctgtaacggtgacctatgaca consensus: * * * * * * * * ** * * ** ** * ** Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 6480~6600: Scer.....: actatcgtctatcaa------gcgaggcgctgaaatcctactattcgctcgaaagaccgctgaacgcaggagattctttt--ttgatcttgaatatcatttgagt----atttttgttc- Spar.....: acga-cattcttcgg------tagagccgt--gagtcagattaaatatgtagaagagtaac-aacaataattattcatga--tgaagctgtcctggcatttcggt----agatgagacca Sbay.....: gatattatacctcagcatctgtctcaacgccgaattgatatgaaaaaaaagaaagccctgtagggggctcgaacccctaaccttatgattaagagtcatacgcgctaccgattgcgccaa consensus: * * ** ** * * * * *** * * * * * *** * * * Spar_spli: DDDDDDDD 6600~6720: Scer.....: ------tacattctagttt----taggaaaatcatcaatcta-tggcaggaatcaatagtgttggaataagaaatgcatatttgcctgcgaaaaaaagttattctttttttttggttaac Spar.....: ctaag-tacattttgatttctgctagaaagattgcttatct--taggagagatcctttctttcaactttagtactgctttagttattgttcta------cattttagttgtttgg--aaa Sbay.....: caaggctcttttctatgtctttttaggtaaaaaaataatgtgttatcgagcatcaaaagatgctcctttagctatatggtctggtgtggtgctgttggatgtttctgggatttgtgtagc consensus: * ** * * *** * * ** * * *** * ** * ** ** **** * 6720~6840: Scer.....: gtagttaaactact-ctgtt----aaaaataatgggt-taaggttcatgttcgtc------acataatgtttcgtac--acttaaaattcaaacgctatca-gtagcattacaacgtgta Spar.....: accatcaacctatcgctagg----atcaatgataggaatattgtttatgttcatc------gcatagcgttccatac--atgtataatccaa-cgcttcta-gtaatattacaaagtgca Sbay.....: g-agtttagatattgctattgtttaaaaaagaataaactatcgtccatctatttctactatatacagtgttcagaaatgacctaaattacaagaccagtgaagtaaggttcaaactgtca consensus: * * ** ** * ** * ** ** ** * ** * * *** * * ** * * *** * * *** ** ** * Scer_spli: DDDDDD DDD 6840~6960: Scer.....: tgaagatcattggaga--aaagca-gatggttaagagcttcttg----cactgaaatttgaaa-atatttgtctgaacttagtagtgaaaagtggtgaa-tgaacca-ggtttt-tatac Spar.....: tgaagatctttggaaa--aaatca-gttaatttggaacttccta----caccagaaactggaa-aggtctgttaaaaattagtaatgaaaagtgatgaaatgaatca-ggttttctgtat Sbay.....: tcgaaatcaatggaagttgaagcgcaaggattgatattgtaataggatcaatgaaagataacatataaaagggaagacagaatcatttatgatagtatgcaaaattgtagattccttttt consensus: * * *** **** ** * ** * * * ** ** * * * * * * * * * * * ** * ** * * Scer_spli: DDD Sbay_spli: DDDDDD 6960~7080: Scer.....: atagatatatggttaagttatgaaaactctttttggaaga-------acaaattagtaca-aaggctgaggcggattggttaa--agtttttaaattaaaag--tgagcttctattttga Spar.....: ataggtatatggttaagtcctcgcaattcccttgtgaaga-------a--aatcagtaaagaaagctgaggcgagttggttaa--agttttcaattcgaaaaattgagctactattttaa Sbay.....: gtgggttcctaaacccatgaggagaatccctagtataatatatatatatatatatatatatatacataatatcataacatcaagaagcaatggaatcccaaaaattattatctaatttca consensus: * * * * * ** * ** * * ** ** * * * * * ** ** * * * ** * * *** *** * Scer_spli: DDDDDD Spar_spli: DDDDDD 7080~7200: Scer.....: taaatca----caaatatataattttt-aacagtgat-----gtatcatct--tcccataaatgta-atgacttcttcttat-gctcagatgatgctc----tgtgaa--ctaagtgcgc Spar.....: taaacca----caaatttataaatttt-aacaaaggtcaaaggtatattttc-ttccatcaacgca-atgacttcttccctt-gtttagatgatgcta----tgtaaaaattgagtacgc Sbay.....: caggtcattaccaattatcttatgcatgaacagaatctgcttatctttcctaaatttatttatatacatatggtcttcctattgcaaagtcaatgcaactagttggaaagaaaaatccgt consensus: * ** *** * * * * * **** * * * ** * * ** ***** * * ** **** * ** * * ** 7200~7320: Scer.....: agtcct------------------------------------------------------------------------------------------------------------------ Spar.....: agtcct------------------------------------------------------------------------------------------------------------------ Sbay.....: taatatgaagcaggctgtctctagtgttttcttaaagaatgatgctccttgctcgctaaatctgcatatacatagatcataaatgatcaaacgaacgagattctgccaaatgtgccggtg consensus: * 7320~7362: Sbay.....: aagaagcggaatatgacacaagttaagtgtctcaattttttc Sbay_spli: DDDDDD { alias......: ['DMC1', 'ISC2'] chromosome.: 5 description: meiosis-specific protein related to RecA and Rad51p. Dmc1p colocalizes with Rad51p to discrete subnuclear sites in nuclear spreads during mid prophase, briefly colocalizes with Zip1p, and then disappears by pachytene end........: 549512 exons......: [(1, 132), (225, 1097)] gene.......: DMC1 introns....: [(133, 224)] length.....: 1097 name.......: YER179W plength....: 365 start......: 548416 tdist......: 27357 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 4 donors and 3 branches Smik: 2 donors and 2 branches Sbay: 3 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 117), ('Spar', 126), ('Spar', 117), ('Sbay', 126)] ->[('Scer', 518), ('Spar', 518), ('Smik', 518), ('Sbay', 518)] ->[('Sbay', 850)] ->[('Scer', 665)] ->[('Smik', 1340)] ->[('Spar', 1586)] ] [ ->[('Scer', 577), ('Spar', 577), ('Spar', 584), ('Smik', 577), ('Sbay', 577)] ->[('Scer', 225), ('Smik', 225)] ->[('Scer', 1564)] ->[('Spar', 361)] ] 0~120: total....: === Scer.....: ---------------------------------ttaaatcgtaaggaaaaataaaataatagtgctgtgatcgcatgatattcttccctggaagcgccatttt--atagcaagaaatgta Spar.....: ttaattggaaagaaaaataataatcaagtggaaaaaagaaaaaaaggaaataaaaacaataatactacgatcgcagaatactctttcccagaaacgccattttttatatcaagaaatgta Smik.....: -------------caaatcgcaaagcaaaataacagtgtagaaaaagaaataactataataatcctatgatcgccaaatattctttcccggaagtaccattttt-atagcaagaaatgta Sbay.....: -----------------------ttgcaaggaaacaacaagtagaaaaaaacaataaaataatactatgatagta-aatactctttttcagaagcaccattct--atagcaacaaatata consensus: * *** * * **** * ** *** * *** **** *** ***** * *** *** **** ** Scer_spli: DDD Spar_spli: DDD 120~240: total....: === Scer.....: agtcaagtatattttaactgtatatcaacaatatagctcttttttatgccttgttg--tttttcttcgggttttcccc-----acacattgtgtggagagatagttattaacagaccgga Spar.....: agtcaagtatgttttaactgtatatcaacaatatagctctcttttatgcctcgctg--tttttcctcgggttctcccccccccacatattgtgaggaaatactgttcttaactcaccg-a Smik.....: aatcaagtatatttcaactgtatatcaagaatgtagctcttttttatgccttgcttgtttttttctccggttccccccc----acataatatggggaaacgcagttgctaactcaccg-a Sbay.....: agtcaagtatgttttaactgtatatcgaaaatatagctct-ttttatgcccttcc----tttttcatcgcttttcccc-------atacagcaggagaacactgttttcaaaacaccg-a consensus: * ******** *** *********** * *** ******* ********* **** * ** **** * * * * *** ** **** * Scer_spli: DDD BBBBBBB Spar_spli: DDD DDDDDD Smik_spli: BBBBBBB Sbay_spli: DDDDDD 240~360: Scer.....: aaatagccgcccaaggataaactttt-atataaagggaagggtagttgacccaaaaaatttggattctacttttccagatttactttcacccttttat-atttgctgtagtctgttatgc Spar.....: aaatagccgcccaagaacgacctttt-gtataaagggaagggaggttgaccaaaaaaatt-gtgcttgacttcttcagcttgcgtttcaccttttttttatttcctttgatttgccatat Smik.....: aaatagccgcccaacaatcagctttttatataaagggaagggagactaattaaaaaaatcaaggtttggcttcttcagattctgttttatctttctt--gtctcccttaatgttctaggc Sbay.....: aaatagccgccctagtaccagctttttgtataaagggaaggcaggatggctaacgaaccc---cttttgtttcttcacttttcctctgtcctttctg-----cctcttaatctcttgagt consensus: ************ * * * ***** ************* * * ** * ** * ** ** * * * ** * * * * 360~480: Scer.....: caatcaggaaagcatttgaacaaa-tATGTCTGTTACAGGAACTGAGATCGATAGTGATACAGCAAAAAATATTCTTAGTGTAGATGAATTACAGAACTATGGTATTAATGCCTCAGATC Spar.....: caactaaccaagcattcgaacaac-tATGTCTGTTACAGGAACTGAAGTCGATAGTGATACAACAAAAAATATCCTTAGTGTGGATGAATTACAGAACTACGGTATCAATGCCTCAGATC Smik.....: taacgcacgaacaattcaaacaaaatATGTCTGTTACAGGAACTGAAGTCGACAGTGATACAACAAAGAATATTCTTAGCGTTGATGAATTACAAAACTATGGTATCAATGCCTCCGACC Sbay.....: caaacaacgaaccgccca---aagtcATGTCTGTTACAGGAACTGAAACTGATAGCGACACAACAAAAAATATTCTTAGCGTGGATGAATTACAGAACTACGGTATCAATGCCTCTGATC consensus: ** ** ** ******************** ** ** ** *** **** ***** ***** ** *********** ***** ***** ******** ** * Spar_spli: BBBBBBB 480~600: total....: ====== Scer.....: TTCAAAAATTGAAGTCTGGTGGGATATACACAGTCAATGTATGTTATAATAACATTTTTAAAACC-TCTGCTGTAGAGGTTCTTTCCCCCTTTCTTTTACTAACTAAT--AATTTGGAAA Spar.....: TGCAAAAATTAAAATCAGGCGGGATATACACTGTCAACGTATGTTATAAAAACTTTTTATAAAGG-TGTGCTGTAAAGGTTCTTTCTTCTTTCTTTTTACTAACTATT--AACT-GGAAG Smik.....: TGCAAAAATTGAAATCAGGTGGTATATACACTGTCAATGTATGTTATAGTAACTTTTTTATAATGATGCGCAGTGAACGTTTTTTTTTCTTTCTTTTTACTAACCATTTTAATTTGGATG Sbay.....: TTCAAAAGTTGAAGTCAAGTGGAATCTACACGGTTAATGTATGTTACAGTGAAATAACTATTCTTGTACGCAG----------------CTTTTTTTTACTAACATTT--ATATGGGAAG consensus: * ***** ** ** ** * ** ** ***** ** ** ******** * * * * ** * ** ********** * * * *** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBBBBBBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >================================================================================= 600~720: Scer.....: GGAACTTT--------TATAGACCGTTTTGTCAACAACAAGAAGACATCTATGTAAAATTAAAGGGTTAAGTGAGGTGAAAGTGGAAAAAATTAAAGAAGCTGCTGGAAAAATCATACAG Spar.....: CTGATTGC--------TACAGACCGTTTTATCAACAACAAGAAGACACTTATGTAAAATCAAGGGATTGAGTGAAGTGAAAGTGGAGAAAATCAAAGAAGCTGCTGGTAAAATCATACAG Smik.....: TTAATTGTCCTCTAGCTATAGACCGTTTTGTCAACAACAAGAAGACATTTATGTAGAATCAAGGGCTTAAGTGAGGTAAAAGTGGAAAAGATCAAAGAAGCCGCAGGTAAAATCATACAG Sbay.....: TGAATTGCCCTCTGGAGATAGACCGTTCTGTCAACAACAAGAAGACACCTTTGTCGAATTAAAGGTCTTAGTGAGGTCAAAGTAGAAAAGATCAAAGAAGCTGCCGGTAAGATCATTCAG consensus: * * * ******** * ***************** * *** *** ** ** * ***** ** ***** ** ** ** ******** ** ** ** ***** *** Scer_spli: DDDDDD known....: ===================>= 720~840: Scer.....: GTGGGATTTATCCCCGCTACTGTACAATTAGATATAAGACAGCGTGTGTACTCCTTATCAACTGGATCTAAGCAACTAGATTCAATCCTAGGTGGTGGAATAATGACAATGAGTATCACT Spar.....: GTGGGATTTATTCCCGCTACTGTGCAATTGGACATAAGACAGCGTGTGTACTCATTATCAACTGGATCCAAGCAACTGGATTCTATTCTGGGTGGCGGAATAATGACAATGAGTATCACA Smik.....: GTAGGCTTTATTCCCGCCACTGTTCAATTGGACATAAGACAACGTGTGTACTCCTTATCAACTGGATCTAAACAATTGGACTCTATCCTGGGGGGTGGAATAATGACAATGAGTATCACA Sbay.....: GTGGGCTTTATTCCCGCCACTGTTCAATTGGACATAAGACAACGTGTATTTTCATTATCAACCGGATCTAAACAATTAGATTCTGTTCTTGGTGGTGGAGTAATGACAATGAGTATCACT consensus: ** ** ***** ***** ***** ***** ** ******** ***** * ** ******** ***** ** *** * ** ** * ** ** ** *** ******************* 840~960: Scer.....: GAAGTATTTGGTGAATTTAGGTGTGGTAAGACACAGATGTCTCATACTTTGTGTGTTACCACGCAGCTTCCGAGGGAAATGGGTGGTGGTGAAGGGAAAGTAGCATATATTGATACAGAA Spar.....: GAAGTATTTGGTGAATTTAGGTGTGGTAAGACACAGATGTCCCATACTTTGTGTGTTACGACACAGCTTCCGAGGGAAATGGGCGGTGGTGAAGGCAAAGTGGCATATATTGATACAGAA Smik.....: GAAGTATTCGGTGAATTCAGGTGTGGTAAGACACAGATGTCTCATACTTTGTGTGTGACAACGCAGCTTCCGAGGGAAATGGGTGGCGGTGAAGGCAAAGTGGCATATATCGACACGGAA Sbay.....: GAAGTATTTGGTGAGTTTAGGTGTGGTAAAACACAGATGTCTCATACTTTATGCGTTACAACACAACTTCCAAGGGAAATGGGTGGAGGCGAAGGTAAAGTGGCATATATTGATACAGAA consensus: ******** ***** ** *********** *********** ******** ** ** ** ** ** ***** *********** ** ** ***** ***** ******** ** ** *** Sbay_spli: DDDDDD 960~1080: Scer.....: GGCACTTTCAGGCCCGAGAGGATTAAGCAAATTGCAGAAGGTTATGAATTGGATCCCGAGTCATGTTTGGCAAACGTTTCATATGCTAGAGCCTTGAATAGTGAACATCAAATGGAACTT Spar.....: GGTACTTTCAGGCCCGAGAGGATTAAGCAAATTGCGGAAGGCTATGAACTGGATCCTGAATCATGTCTGGCAAATGTTTCATATGCTAGGGCCTTGAATAGTGAACATCAAATGGAACTC Smik.....: GGTACCTTCCGGCCTGAGCGGATCAAGCAAATTGCAGAAGGTTACGAATTGGATCCTGAGTCATGTTTGGCAAACGTTTCATATGCTAGGGCTCTGAATAGTGAACATCAAATGGAACTT Sbay.....: GGTACTTTCAGGCCAGAAAGAATCAAACAGATTGCTGAAAGCTACGACCTGGATCCTGAATCATGCTTAGCAAACGTTTCTTATGCTAGAGCATTGAATAGCGAACACCAAATGGAGCTT consensus: ** ** *** **** ** * ** ** ** ***** *** * ** ** ******* ** ***** * ***** ***** ******** ** ******* ***** ******** ** 1080~1200: Scer.....: GTTGAACAATTGGGTGAAGAACTTAGTTCTGGAGATTATCGCCTTATCGTGGTAGATTCTATAATGGCAAACTTCAGAGTAGACTACTGCGGTAGAGGTGAACTAAGCGAAAGACAGCAA Spar.....: GTTGAGCAATTAGGTGAAGAGCTTAGTTCTGGAGATTATCGTCTTATTGTGGTAGATTCGATAATGGCAAACTTTAGAGTAGACTATTGTGGTAGAGGTGAGCTAAGCGAAAGGCAACAA Smik.....: GTAGAACAATTAGGTGAGGAGCTTAGTTCTGGAGATTATCGCTTAATCGTGGTAGATTCTATAATGGCGAATTTTAGGGTAGACTATTGCGGTAGAGGTGAGCTAAGTGAAAGACAACAA Sbay.....: GTAGAACAGTTGGGCGAAGAACTAAGTTCTGGGGATTATCGTTTGGTTGTTGTGGACTCGATAATGGCCAATTTTCGAGTTGATTACTGCGGTAGAGGTGAACTGAGTGAAAGACAGCAA consensus: ** ** ** ** ** ** ** ** ******** ******** * * ** ** ** ** ******** ** ** * ** ** ** ** *********** ** ** ***** ** *** 1200~1320: Scer.....: AAGCTAAATCAACATCTTTTCAAATTGAATAGATTGGCAGAGGAATTTAATGTTGCAGTATTTCTGACAAACCAAGTTCAATCAGACCCAGGTGCTTCTGCATTATTTGCCTCGGCAGAT Spar.....: AAGCTTAATCAACATCTTTTCAAATTAAATAGATTGGCAGAGGAATTTAATGTCGCAGTATTTCTAACAAACCAAGTTCAGTCAGACCCAGGTGCTTCTGCATTATTTGCCTCTGCAGAT Smik.....: AAGCTAAACCAACATCTTTTCAAATTAAACAGATTGGCAGAAGAATTCAACGTCGCAGTATTTTTAACAAACCAGGTACAATCAGATCCGGGTGCGTCTGCACTATTTGCCTCCGCAGAT Sbay.....: AAGCTAAATCAACATCTCTTCAAATTGAATAGATTAGCCGAGGAATTTAACGTCGCTGTATTTCTGACGAACCAAGTTCAATCCGACCCAGGTGCTTCTGCCCTATTTGCATCTGCAGAC consensus: ***** ** ******** ******** ** ***** ** ** ***** ** ** ** ****** * ** ***** ** ** ** ** ** ***** ***** ******* ** ***** 1320~1440: Scer.....: GGTAGGAAACCAATTGGAGGGCACGTTCTGGCACATGCGTCAGCAACAAGGATTTTGTTGAGAAAAGGGCGTGGTGACGAAAGAGTTGCCAAGTTACAAGATTCCCCAGATATGCCTGAA Spar.....: GGTAGGAAACCGATTGGAGGGCACGTCTTGGCACATGCGTCAGCAACAAGGATCCTGTTGAGAAAAGGACGTGGTGACGAAAGAGTTGCCAAGTTACAAGATTCTCCAGATATGCCTGAA Smik.....: GGTAGAAAACCAATTGGAGGGCATGTATTGGCACATGCTTCAGCAACAAGGATTCTATTGAGAAAAGGACGCGGTGATGAAAGAGTTGCCAAGTTACAAGATTCTCCAGATATGCCCGAA Sbay.....: GGCAGGAAACCGATTGGTGGGCACGTCCTGGCACATGCGTCAGCGACAAGAATCCTTTTGAGAAAAGGTCGTGGTGATGAAAGAGTTGCAAAGTTGCAGGACTCTCCAGATATGCCAGAG consensus: ** ** ***** ***** ***** ** ********** ***** ***** ** * *********** ** ***** *********** ***** ** ** ** *********** ** Smik_spli: DDDDDD 1440~1560: Scer.....: AAAGAATGTGTCTACGTAATTGGTGAAAAAGGTATTACCGATTCAAGTGACTAGtttttgtata-cttttttaatgaagatgacattgctccttt--attaaac--ttttcttttacttt Spar.....: AAAGAATGTGTTTATGTAATTGGTGAAAAAGGTATCACCGATTCAAGTGACTAGtctgtgtac--tgtttttaatgaagatgacattgctcgttt--at-gaat--tttctttttacttt Smik.....: AAAGAATGTGTTTACGTAATTGGTGAAAAAGGTATCACCGATTCAAATGACTAGatcttgtgtattgtatttaatgaaaatgacattgcttcttt--gagaaac--tttctattggtttt Sbay.....: AGAGAGTGTGTTTACGTAATCGGTGAAAAGGGTATTACCGACGCAAGTGATTAGatcg---acgttgtatttaatgaagattacatagctgtttttaatgaaacgttttttcttaacttt consensus: * *** ***** ** ***** ******** ***** ***** *** *** *** * ********* ** **** *** *** ** *** ** *** 1560~1680: Scer.....: gtgttactaatattattaatatcttgttatgattctttgttttagcagctccaaaagaaaggaatattataatataattgttgtaattcggaaaaaaaatattaaat-tactatggtgca Spar.....: gtgtta---------ttaatgttttcgtatgattatccgtttatg-aattctaaaaaagaaaaagat---agacccattgttgtcgtt--aagaaaaaaggttaaat-tactctattgca Smik.....: gga-----------attaatgtttttatatgcttttttgttttacaaagtttaaactat-gaatgattccaaaaaaatggtggtggtcctaaggaaaaaaacctaacattacacagcaca Sbay.....: gtatta---------ttaatgttttggaaaggtttttcgaat-----attctaaagta-------attgaaaaaatactgctgaaa----gaagaatatcgcacacgctacttaaatgca consensus: * ***** * ** * * ** * * * * *** * ** * * * * * ** * * * ** Scer_spli: BBBBBBB Spar_spli: DDDDDD 1680~1708: Scer.....: tatgcgtatataaaatt--gagcattac Spar.....: taagtatatatagaaa---gagcattat Smik.....: tatatatatatagaaaactaagcattaa Sbay.....: tataca-agacactaaaataagtat--- consensus: ** * * * * ** ** { alias......: ['HAC1', 'ERN4', 'IRE15'] chromosome.: 6 description: bZIP (basic-leucine zipper) protein end........: 76145 exons......: [(1, 661), (914, 969)] gene.......: HAC1 introns....: [(662, 913)] length.....: 969 name.......: YFL031W plength....: 323 start......: 75177 tdist......: 75177 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 1 donors and 2 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1203), ('Spar', 1203)] ->[('Scer', 2122)] ] [ ->[('Scer', 777), ('Spar', 777)] ->[('Scer', 2163), ('Spar', 2163)] ] 0~120: Scer.....: ctgt-cttcctctactgggcttatctattctatcaaatgaggcaagagaaaggaaagggaaaaaaaaaaagggaaaatgcttgatgagttaggaattcagtaaaagcacccaccagaacc Spar.....: ctatatttcctctaccaggcttatctattctatcaaatgaggcaagagagaaaggaaagggaaaaaaaagggaaaaacacttgatgaattgggaattcagtataagcacccaccagaacc consensus: ** * ********* ******************************** * * * ******** ** **** ******** ** *********** ***************** 120~240: Scer.....: tctacagcaggccttccaggagtggttaagaggatagagaattctgtatatatatatacgtctatatctatacaaaaaacggcagacaatgcagaagttgaaaatgctgtgatacgaaca Spar.....: tctacagcaggccttccaggattgcttaatagaatgaagaaatatatatataagtatatttatatatatatactaaaaacggcacacaatgcagaagttgaaaatgctgtaatacgaaca consensus: ********************* ** **** ** ** **** * * ****** **** * ***** ***** ********** ************************* ********* 240~360: Scer.....: acaacttatttttacaatgaaaaacaacaccaagctgccaaaa--gctgtatattaaagttaaagctccctcatttttagtaaggacgctttcttttcccacaaaagggacgaggaaaaa Spar.....: gcaagctaattttactatgaaaaacaacaccaagttgccaaaaaagctctatactaaagttaaagctccctcatttttagtaaaaacgattccttttcccacaaaacgaacggaaaaaaa consensus: *** ** ****** ****************** ******** *** **** ***************************** *** ** ************** * *** ***** 360~480: Scer.....: aagaaaaacctggaaatatagtcacgtgacatgaataaacaagacctagggcaatatggaaaaagaagctaggataaaaatacatttATGAGGGTTGTAAGGCAAAGTGGCTCAGCATTA Spar.....: agaaaaatagtggaaatataatcacgtgatagacataatcatgacctagggtaatatgaaataacagctagggaaagaattctatttatgagggtttaaagctaaaggggctcagcataa consensus: * **** ********** ******** * **** ** ********* ****** ** ** * *** * ** * ************* *** **** ********** * 480~600: Scer.....: AGTAGGGCTAAAAAGAGTCGCAAATATACATCGTACCGAGTGATGAACGTGGTTTTGAACACCTTGTTCTCTTTTGTTCTCGCTCCCTACATTCACTATATATTAGAAGAAATTTCACCT Spar.....: tataggtttgaaataggaacctggtctacatcgtacattgtgATGAAAATGGTTTTGGACACCTTGTTCTCTTTTGTTCTCATTCCCT-CTTTCACTATATATTGGAAGAAATTTCACCT consensus: **** * *** * * * ********** ******** ******** *********************** ***** * ************* *************** 600~720: Scer.....: CAATGGAC-AACTCGAGAAATGAATACAGAAATATGTTTTTTA-GCGAAATTTTCCTTTCTTCTTGTCTTCTTGTTTTATTTAAACTTCCAAGGCTTTAACTCAGTGTCAAACATAACAA Spar.....: CAACGAACCAAGTCGAGAAAGAAGGACAGCTTTATCTAGTTTATGTGAAACTTCTCTTGTCTTTTGT-TTCTTGTCTTATTTAATATTCCAAGGCTTTAACTCACTGTCAAACGTAACAA consensus: *** * ** ** ******** * **** *** * **** * **** ** *** * **** ******* ******** ****************** ******** ****** 720~840: Scer.....: C--CTCCTCCTCCCCCACCTACGACAACAACCGCCACTATGGAAATGACTGATTTTGAACTAACTAGTAATTCGCAATCGAACTTGGCTATCCCTACCAACTTCAAGTCGACTCTGCCTC Spar.....: CTCCTCCCCCTCCCCCACCCACGACAACGACCGCCACTATGGAAATGACTGATTTTGAACTAACTAGTAATTCGCAATCGAACTTGGCTATCCCTACCAACTTCAAGTCGACTCTGCCCC consensus: * **** *********** ******** ***************************************************************************************** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB 840~960: Scer.....: CAAGGAAAAGAGCCAAGACAAAAGAGGAAAAGGAACAGCGAAGGATCGAGCGTATTTTGAGAAACAGAAGAGCTGCTCACCAGAGCAGAGAGAAAAAAAGACTACATCTGCAGTATCTCG Spar.....: CAAGGAAAAGAGCGAAGACAAAAGAGGAAAAGGAACAGCGAAGGATCGAGCGAATTTTGAGAAACAGAAGAGCTGCTCACCAGAGTAGAGAGAAAAAGAGACTACATCTGCAATACCTCG consensus: ************* ************************************** ******************************** *********** ************** ** **** 960~1080: Scer.....: AGAGAAAATGTTCTCTTTTGGAAAATTTACTGAACAGCGTCAACCTTGAAAAACTGGCTGACCACGAAGACGCGTTGACTTGCAGCCACGACGCTTTTGTTGCTTCTCTTGACGAGTACA Spar.....: AGAGGAAATGTTCTCTTTTGGAAAATTTGCTGAACAGTGTCAACCTTGAAAAATTGGCTGACCACGAGGACGTGTTGACTTGTGGCCACGATGCTTTTGTTGCTTCTCTTGACGAGTATA consensus: **** *********************** ******** *************** ************* **** ********* ******* ************************** * 1080~1200: Scer.....: GGGATTTCCAGAGCACGAGGGGCGCTTCACTGGACACCAGGGCCAGTTCGCACTCGTCGTCTGATACGTTCACACCTTCACCTCTGAACTGTACAATGGAGCCTGCGACTTTGTCGCCCA Spar.....: GGGATTTCCAGAGCACGAGAGACGCCTCACTGGACGCCAGGGCCAGTTCGCACTCATCGTCTGATACGTTCACACCTTCACCTTTGAACTGTACAATGGAGCCTGCAACTTTGTCGCCCA consensus: ******************* * *** ********* ******************* *************************** ********************** ************* known....: >======================================================================================= 1200~1320: Scer.....: AGAGTATGCGCGATTCCGCGTCGGACCAAGAGACTTCATGGGAGCTGCAGATGTTTAAGACGGAAAATGTACCAGAGTCGACGACGCTACCTGCCGTAGACAACAACAATTTGTTTGATG Spar.....: AGAGTATGCGTGATTCTTCGTCGGACCAAGAGACTTCATGGGAACTGCAGATGTTTAAGACGGAAAATATACCAGAATCCACGACGCTGCCTGCCGTAGACAACAACAATTTGTTTGATG consensus: ********** ***** ************************* ************************ ******* ** ******** ******************************* Scer_spli: DDDDDD Spar_spli: DDDDDD known....: ======================================================================================================================== 1320~1440: Scer.....: CGGTGGCCTCGCCGTTGGCAGACCCACTCTGCGACGATATAGCGGGAAACAGTCTACCCTTTGACAATTCAATTGATCTTGACAATTGGCGTAATCCAGCCGTGATTACGATGACCAGGA Spar.....: CGGTGGCTTCGCCGTTGGCAGACCCGCTCTGCGACGATATAGCGGGAAACAGTCTACCCTTTGACAATTCAATTGATCTTGACAATTGGCGTAATCCAGCCGTGATTACGATGACCAGGA consensus: ******* ***************** ********************************************************************************************** known....: ==========================================>= 1440~1560: Scer.....: AACTACAGTGAACAAGAACACTAGCCCCAGCTTTTGCTTTCTGCTTTTTTTCTTTTTTTTTTTTTTTAGTCGTGGTTCTCTGATGGGGGAGGAGCCGGTTAAAGTACCTTCA--AAAGCA Spar.....: AACTACAGTGAacaagaagaccagccccaatttttactttctgcatttttt------ttttttttttagtcgtggttctctaaagggggaggagccggttaaagtaccttcacaaaagca consensus: ****************** ** ******* **** ******** ****** ************************ * **************************** ****** 1560~1680: Scer.....: GAATGCAGGGTTATTGGAAGCTTTCTTTTTTTCTTTTATGCTAGTTTTT-CCTGAACAAATAGAGCCATTCTTTTCTTATTACTAAGAAATGGACGGCTTGCTTGTACTGTCCGAAGCGC Spar.....: gaatgcaagagtattgggagcagtttgtttttttttcatgctagttttttcctgaacaaaaagagcc-ttctttccttattgttagggaataggtggcttgcttgtactgtccgaagcgc consensus: ******* * ****** *** * * ***** *** ************ ********** ****** ****** ****** ** * *** * ************************* 1680~1800: Scer.....: AGTCAGGTTTGAATTCATTTGAATTGAATGATTTCTTCATCACTTCATGAagacaatcgcaagagggtataattttttttttctcgttattatcgctgttggtgggttttttcttttcat Spar.....: agtcaggtttgaattcatttgaattaaacgatttctttatcacttcgtgaagacaatcgcaaaagggtatacttttttttctc-cgttattatcgctgttggtgggtttttcttcgttac consensus: ************************* ** ******** ******** *************** ******** ******** ** *************************** * * * 1800~1920: Scer.....: atatt----tctttttcgcttagtggtttctactgttctgtctccggttagtgtgtgctacttcaaccgaagaagaagaggcttttcaagaatgcaaacgtgaggttggcgcgccctcct Spar.....: atattattttattttttgcttagtggtttctactgtttggtctccggctagcgtttgctactacagctgaagaagaagagacttttcaagaatgcaaacgtgaggttggcgcgccctcct consensus: ***** * ***** ******************** ******** *** ** ******* ** * ************ *************************************** 1920~2040: Scer.....: acaattatttgtggcgactgggcagcgacactgaacatagctcttgaacaagacccttttttggctgcaaggagcaagactggc-tggggttccacctcaaagagccacgctctgctttt Spar.....: acaattatttgtggtgactgggcagcgacactgaacatagc--ttggacaagacccttctttgactgcaaggagccgtgctggcatggggtttcgcctcaa-gagccacgctctactttt consensus: ************** ************************** *** *********** **** *********** ***** ******* * ****** ************ ***** 2040~2160: Scer.....: tttctatctgtttgtgtcatatctatctgtctatttatctatatatatatttttttatataaaactataaagaattcttgatgtatgcccttaggttgggcagcttttcaaccttagact Spar.....: tttctatctgtctgtgt-------gtctatctaactatctatatatatgactttctatataaaaccataaagaattcttgatgt--gccctttggttgggcagcttttcaaccttagacc consensus: *********** ***** *** **** ************* *** ********** ****************** ****** ************************** Scer_spli: DDDDDD 2160~2280: Scer.....: tgatgctaacgccgctctgttccttctcccgtgctcccgcaagcgaacatctccccc-taactccgggccaatgagtgataactatatcaaataccttcgaaaggaccttagtcatcata Spar.....: tggtgctaacgccgctttgttcttcctcccgcactcccgcaaacgttcctctcccccctaactccgggccaatgagtgataacgatatcagatactttcgaaaggaccttagtcataata consensus: ** ************* ***** * ****** ********* ** * ******** ************************* ****** **** ******************** *** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2280~2400: Scer.....: tcactctcactct------------cacggctctctgtagtcctcctcgaggagtggccaagaatgttctgttccgcagtctttatataatcgcactggttgaagacgaaagctcatata Spar.....: tcactgtcactgtaactgtaactgtcaccgctatgactgctcgtcctcgaggagtggacaagaatgttttgttcctcagcctctatataattgcactccttgagcgtaaaagcacatata consensus: ***** ***** * *** *** * * ** ************** ********** ****** *** ** ******** ***** **** ***** ****** 2400~2431: Scer.....: attctttttccatagcctaaatacaccaacg Spar.....: attctccttctatagcccaaatacaccagaa consensus: ***** *** ****** ********** { alias......: ['RPL22B', 'YFL035C-B'] chromosome.: 6 description: Ribosomal protein L22B (L1c) (rp4) (YL31) end........: 64931 exons......: [(1, 12), (334, 690)] gene.......: RPL22B introns....: [(13, 333)] length.....: 690 name.......: YFL034C-A plength....: 230 start......: 64242 tdist......: 64242 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 555)] ] [ ->[('Scer', 100)] ->[('Scer', 854)] ] 0~120: Scer.....: cttttagtactgtaatgtttaatcttctcttttaactctgcctctattacgttcgagaaacccttccactatgctttccaatcactaatagaatcactaaaactaactgtaccagccagt consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 120~240: Scer.....: aaggaaaatacgaagctattcaaactcggaaacaaactagcgtatggtataattctctattagtagtacacaccctttcctactaccacgataggatcgtttatttgcaccgcatttcct consensus: ************************************************************************************************************************ 240~360: Scer.....: ttcatattcttaaagcattaaggtcggcaaaatatcgagactgctttctccatgtcaacacccgtacatattcagagataacacccataaattatacaaaaaagtttccaaacttttttt consensus: ************************************************************************************************************************ 360~480: Scer.....: ttagacaacgcgagccgaatggatgaatttttcaagcaaaaaagagctaattacctaaatgattcatatatggattattaaagtacacgattaattgataattattgattttttttgaac consensus: ************************************************************************************************************************ 480~600: Scer.....: atctgggatcataaaaacaccgtagcacagtaaacctatatcgtttcacaaatatcaaccacaATGGCTCCAAACGTACGTTAATTTTCGTTCCTATGTCACAATTAGAGAACATGAAAG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================================ 600~720: Scer.....: AAAATAAAATCTTTAAAAAGTTTGTCTATTCCTACAGTTCATTGAACAGTCCCGCTTTCACAGCGAACTAGTGGATTCCATCTCGAAGTTACATTTTTATGTATTCAGCTATTCTGTATT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: TTAAAAATTCACCCCTTATAGCTTTAACAGAGGCAATGCGCTTTCTCTAGCTATATGAAGTGATTGTTAATAGCAGTAGGCCAGACATTTTTTCCTCGTCCAAACGACAAGGATGATTTC consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: ATCTCAGTTGGGATTACTAACATAAAACTGTAACAGACTTCCAGAAAGCAAAAAGTTATCAAAACCTTAACCGTTGACGTTTCCTCTCCAACTGAAAACGGAGTCTTCGATCCGGCTTCA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ==================================>= 960~1080: Scer.....: TATTCCAAGTACTTAATCGATCATATTAAAGTAGATGGTGCCGTAGGAAACTTAGGGAACGCCATTGAGGTTACTGAAGATGGTTCTATAGTCACTGTAGTATCCAGTGCCAAATTTTCT consensus: ************************************************************************************************************************ 1080~1200: Scer.....: GGTAAATACTTGAAATATCTAACAAAGAAGTATTTGAAGAAGAATCAGCTAAGAGACTGGATCAGATTCGTCTCTATAAGGCAAAACCAATACAAATTGGTTTTCTATCAAGTCACCCCT consensus: ************************************************************************************************************************ 1200~1320: Scer.....: GAAGATGCTGACGAAGAAGAGGATGACGAATAAatagacactcacatgtatattaatttataaaatgctattcatatcataattcaccacccttaatatatccttttgtccctcttttga consensus: ************************************************************************************************************************ 1320~1440: Scer.....: tttacatattttatttttgcaatatgtcacttcacgaaaattagtgaaaaatagaaaagaaaaagaaatgctttagcttttgaaacacgaagatcatcaaaaaactttaagaaaagcaac consensus: ************************************************************************************************************************ 1440~1482: Scer.....: taccccaattccgcaagccaaccaagcatttatcagcacatc consensus: ****************************************** { alias......: ['MOB2', 'YFL035C', 'YFL035C-A'] chromosome.: 6 description: Mob1p-like protein end........: 63992 exons......: [(1, 20), (135, 978)] gene.......: MOB2 introns....: [(21, 134)] length.....: 978 name.......: YFL034C-B plength....: 326 start......: 63015 tdist......: 63015 type.......: ORF up.........: 0 } Scer: 5 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 269)] ->[('Scer', 659)] ->[('Scer', 800)] ->[('Scer', 898)] ->[('Scer', 1333)] ] [ ->[('Scer', 321)] ] 0~120: Scer.....: atagacactcacatgtatattaatttataaaatgctattcatatcataattcaccacccttaatatatccttttgtccctcttttgatttacatattttatttttgcaatatgtcacttc consensus: ************************************************************************************************************************ 120~240: Scer.....: acgaaaattagtgaaaaatagaaaagaaaaagaaatgctttagcttttgaaacacgaagatcatcaaaaaactttaagaaaagcaactaccccaattccgcaagccaaccaagcatttat consensus: ************************************************************************************************************************ 240~360: Scer.....: cagcacatcATGTCCTTCTTCAACTTCAAGTATGTTCACACTGTTGTCGTTTTATTTTCTTCTGGACCTGCGTTATCATTTTACTAACTAGCCAACACACCTAATCAAATCATTTGATCC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >========================================================================================== 360~480: Scer.....: TACGTGTATACTTTGCAAAACAGAGCATTCGGAAGAAACTCAAAGAAAAATAAAAACCAGCCCCTTAATGTTGCTCAGCCGCCAGCAATGAACACCATTTATTCAAGCCCCCACAGCAGC consensus: ************************************************************************************************************************ known....: =====================>= 480~600: Scer.....: AATTCCAGATTATCGTTAAGAAATAAACATCATTCGCCTAAGAGGCATTCTCAAACAAGTTTCCCCGCACAAAAGTCTACGCCGCAATCACAGCAATTGACATCTACCACACCACAGTCT consensus: ************************************************************************************************************************ 600~720: Scer.....: CAACAGCAAGAAGCTAGTGAGAGATCAGAATCACAACAGATAATGTTTCTCAGCGAACCGTTCGTAAGAACTGCTTTAGTGAAAGGTTCATTTAAAACAATAGTACAATTGCCCAAATAT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: GTGGACCTGGGAGAGTGGATAGCGTTGAACGTTTTCGAATTCTTCACAAACTTGAACCAATTTTACGGAGTAGTAGCGGAGTACGTAACGCCTGACGCGTATCCAACAATGAACGCTGGC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 840~960: Scer.....: CCTCACACGGATTATTTATGGCTGGACGCAAACAATAGACAGGTTTCACTGCCAGCTAGTCAGTACATAGATTTGGCCCTCACGTGGATAAATAACAAAGTGAACGATAAAAACTTGTTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 960~1080: Scer.....: CCGACCAAAAATGGGCTACCATTCCCGCAGCAATTTTCGAGAGATGTGCAGAGAATCATGGTACAGATGTTCAGGATATTCGCACATATTTATCACCACCACTTTGACAAAATTGTGCAC consensus: ************************************************************************************************************************ 1080~1200: Scer.....: TTGTCATTAGAAGCTCATTGGAATTCATTTTTCTCTCATTTCATTAGTTTTGCAAAGGAGTTTAAGATCATTGACAGAAAGGAAATGGCTCCGCTGCTACCGTTAATTGAAAGCTTTGAA consensus: ************************************************************************************************************************ 1200~1320: Scer.....: AAACAGGGCAAAATTATTTATAATTAGaggtgaacacaattattattattagttaccatgggtcactcctattttagacacttaatataaacaattaaaaagaatgaaaaataatgcaaa consensus: ************************************************************************************************************************ 1320~1405: Scer.....: cgataaacgctaagtatgtatatatatatatatgtacaagttaaataaaaataacacaaataaattttagtttgtagttcacggc consensus: ************************************************************************************* Scer_spli: DDDDDD { alias......: ['ACT1', 'ABY1', 'END7'] chromosome.: 6 description: Actin end........: 54695 exons......: [(1, 10), (319, 1436)] gene.......: ACT1 introns....: [(11, 318)] length.....: 1436 name.......: YFL039C plength....: 478 start......: 53260 tdist......: 53260 type.......: ORF up.........: 0 } Scer: 5 donors and 3 branches Spar: 5 donors and 2 branches Smik: 6 donors and 4 branches Sbay: 6 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 2236), ('Scer', 2246), ('Spar', 2236), ('Spar', 2246), ('Smik', 2236), ('Smik', 2246), ('Sbay', 2242), ('Sbay', 2246)] ->[('Scer', 744), ('Spar', 744), ('Smik', 744), ('Sbay', 744)] ->[('Scer', 1132), ('Spar', 1132), ('Smik', 1132), ('Sbay', 1132)] ->[('Scer', 2363), ('Smik', 2363), ('Sbay', 2363)] ->[('Sbay', 1016)] ->[('Smik', 1089)] ->[('Spar', 195)] ] [ ->[('Scer', 726), ('Spar', 726), ('Smik', 726)] ->[('Scer', 1043), ('Spar', 1043), ('Smik', 1043)] ->[('Sbay', 1057)] ->[('Sbay', 2424)] ->[('Scer', 295)] ->[('Smik', 49)] ->[('Smik', 1316)] ] 0~120: Scer.....: -------------acaagcgcgcctctaccttgcagacc-catataata--taataactaaataagtaaataag-a------------cacacgcgagaacatata---------tacac Spar.....: -------------acaagcacacctctaccttgcagaccacatataata--taataactaaataagtaaataag-a------------cacacgcaagaacatata---------tacac Smik.....: -------------agaagcacatctctaccttgcagaccacgtataata--tactaactaaataaaccatcaaata------------tataaataaataaataaa---------taaat Sbay.....: aagaagaaaaagaagaagcacgcctctactttgcagactacgtataataataactaaataaacaaacaaacagaaaaaaaaaaaaaatcatacgagaatatatatatgtatatattatac consensus: * **** * ****** ******** * ******* * *** **** ** * * * * * * * *** * ** * Smik_spli: BBBBBBBBB 120~240: Scer.....: aattacagtaa------caataacaagag--gacagata-------ctaccaaaatgtgt-ggggaagcgggtaagctgccacagcaa--ttaatgcacaacatttaacctacattcttc Spar.....: aactacagtaa------caattacatgag--aacaaata-------ataacgagatctgtggggggagcgggtaagcatgtacagcta--ttaaaccagagt-cttaccctacattcttc Smik.....: aaataaaataagacacgcgataacataca--tgcaacta--------cacgatggtaccaaagaatgacgtatggttacccgccgcaaacataagccctag--aataccctgcattcttt Sbay.....: aattacagtaacaattacaattataggaggaaacaagtaaataaataaaaaaaaatgcggggggagataggaaggggttacccgcctgacgtattatcttaa-aaacccctacattcttg consensus: ** ** * *** * ** * * ** ** * * * * * * ** *** ******* Spar_spli: DDDDDD 240~360: Scer.....: cttatcggatcctcaaaacccttaaaaacatatgcctcaccctaacatattttccaattaaccctcaatatttctctgtcacccggcctctattttccattttcttctttacccgccacg Spar.....: cttatcggattcgccaaaaccctcaaaatataaacctcatcctagaatatatttcaatttaccctcaagcctttcatatcacccggcccctattttccattttcctctttacccgccacg Smik.....: cttatcagatgggccgaaaccctcgaaaactactgcatgccctaacaactttataattccaccttcaagattttc-tataacccggctgccattttccattttc-tctttacccgccacg Sbay.....: cttatcgggctggccccagacctaaaaaacacgatccagccctgggtgccatat--tccagggttccaggc-----catcacccgccccggattttcgctt------tttacccgccacg consensus: ****** * * * * * *** * *** * ** * * ***** * ****** ** ************* Scer_spli: BBBBBBB 360~480: Scer.....: cgtttttttctttcaaatttttttcttccttcttctttttcttccacgtcctcttgca-taaataaataaaccgttttgaaaccaaactcgcctctctctctcctttttgaaatattttt Spar.....: cgtttttttc--tcaaaattttttcttccttcttctttttcttcctcttcctcttgca-taaataaataaaccattttgaaaccagactcgcc--tctctctcctttttgaaatattttt Smik.....: cgtttttttc--tgaaatttttttcttccttcttctttttcttcctcttcctcttggattgaataaataaaccgttctgaaaccgaactcgct--tctctctcctttttgaaatattttt Sbay.....: cgttttttt---tcaggtttttttcttctttcttcttcgtcttcttc--cctcttgga-tgaataaataaaccgctttgaaaccaaactcgcc--tctctctcctttttggaatgttttc consensus: ********* * * ********** ******** ***** * ******* * * ************ * ******* ****** *************** *** **** 480~600: Scer.....: gggtttg-tttgatcctttccttcccaatctctcttg-tttaatatatattcatttatatcacgctctctttttatcttcctttttttcc------tctctcttgtattcttccttcccc Spar.....: gggtctgttttgatcctttccttcccga--tctcttg-tttagtatatattcatttatatcacgctctctttttatcttcctttttctcc------tctctcttgtattattccttcccc Smik.....: gggtctg-tttgatcc-ttccttcccaa--tctcttg-tttagtatatattcatttatatcacgctctctttttatcttcccttttctcc------tctctcttgtattcttccttc--c Sbay.....: agtttctgcctgatcctttccctctcaa--tctcttgttttgatatatattcatttatatcacgctttctttttatcttccttttttttccctctttctctcttgtattattctttcctc consensus: * * ****** **** ** * * ******* *** *********************** ************** **** * * ************* *** *** * 600~720: Scer.....: tttctactcaaaccaagaagaaaaagaaaaggtcaatctttgttaaagaataggatcttctactacatcagcttttagatttttcacgcttactgcttttttcttcccaagatcgaaaat Spar.....: tttctattcaaaccaagaagaaaaagaaaaggtcaatctttgtcaaagaataggatctactactacatcagcttttagatttttcacgcttactgcttttttcttcccaagatcgaaaat Smik.....: tttctattcaaaccaagaaggaaaagaaaaggtcaatctttgtcaaagaataggatcttctactacatcagcttttagatttttcacgcttactgcttttttcttcccaagatcgaaaat Sbay.....: ttctcactcaaagtaagaagaaaagaaaaaggtcaatctttgtcaacgaacaggatctagcactacatcagcttttagattttttacgcttactgcttttttcttcccaagatcataaat consensus: ** * ***** ****** *** ***************** ** *** ******* *********************** ***************************** **** 720~840: total....: ====== Scer.....: ttactgaattaacaATGGATTCTGGTATGTTCTAGCGCTTGCACCATCCCATTTAACT-GTAAGAAGAATTGCACGGTCCCAATTGCTCGAGAGAT--TTCTCTTTTACCTTTTTTTACT Spar.....: ttactgaattaacaatggattctggtatgttctagcgcttgcgccatccaatttacct-gtaagaagaattgcaccgtcccaattgctcgagagtt--ttctcttttacctttttttcca Smik.....: ttactgaattaacaatggattctggtatgttctagcgctttcaccatcgcattgctcc-gtaagaagaattgcacagttccaattgctcgagagtt--tt-tctctta--gtattatcct Sbay.....: ttactgaattaaaaatggattctggtatgttctagctcttccaccgctttactactctagcaagaaggattgtgtcgttccaatggctcgagagctcgtctcctttttttttttttttcg consensus: ************ *********************** *** * ** * * * * ****** **** ** ***** ********* * * ** ** * ** * * Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB DDDDDD Sbay_spli: DDDDDD known....: >=============================================================================================== 840~960: Scer.....: ATTTTTCACTCTCCCATAACC-TCCTATATTGACTGATC-------TGTAATAACCACG-ATATTATTGGAAT-AAATAGGGGCTTGAAATTTGGAAAAAAAAAAAA------------- Spar.....: ttatttttcactcccataacc-tcctgtgttgactgatc-------tgtaattaccacg-atattattggaat-aaataggggcttgaaatttggaaaaaaaaaaaaa------------ Smik.....: ttatttttcactctcaaggcc-tcctgttttgactgatc-------tatatttatcacg-atattatttggataaaataggggcttgaaatgtgggaaaaaaaaaaaa------------ Sbay.....: ttttcccatttcttcatggcctttttgttttggctgatcgatctattattattaccacgtatattattggaat-aaataggggcttgatatttggaaaaaaaaaaaaaaaaaaaatttaa consensus: * * ** ** * * * *** ****** * * * * **** ******** * ** ************** ** *** *********** known....: ======================================================================================================================== 960~1080: Scer.....: ------------ACTGAAATATTTTCGTGATAAGTGATA-GTGATATTCTTCTTTTATTTGC-TACTGTTACTAAGTCTCATGTACTAACA-TCGATTGCT-----TCATTCT-TTTTGT Spar.....: ----------acattgaaatattttcgtgatgagtgata----------ttcttttatttgc-tactattattaagtttca-atactaaca-tctattgct-----tcattttcttttgt Smik.....: ------------------------tcgtgataagtgata-------ttcttcttttatttgc-tacttttatcaagtttcg-atactaaca-tctattgct-----ttct----ttttgt Sbay.....: gaaaaatgaaaaaacagacgagtttcgtgtggagtgatttttcaaatcactcgcgtgtatgcgtattcttctttgctgctacttttatacattttgatactaacaagcattat-tttttt consensus: ***** ****** ** * * *** ** * ** * * *** * * ** * **** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: ======================================================================================================================== 1080~1200: total....: ====== Scer.....: TGCTATATTATATGTTTAGAGGTTGCTGCTTTGGTTATTGATAACGGTTCTGGTATGTGTAAAGCCGGTTTTGCCGGTGACGACGCTCCTCGTGCTGTCTTCCCATCTATCGTCGGTAGA Spar.....: tgctatattatatgtttagaagttgctgctttggttattgataacggttctggtATGTGTAAAGCCGGTTTTGCCGGTGACGACGCTCCACGTGCTGTCTTCCCATCTATCGTCGGTAGA Smik.....: tgctatattgtatgtttagaggttgctgctttggttattgataacggttctggtATGTGTAAAGCCGGTTTTGCCGGTGATGACGCTCCTCGTGCTGTCTTCCCATCTATCGTTGGTAGA Sbay.....: ctcccttttttatgattagaagttgctgctttggttattgataacggttccggtATGTGTAAAGCCGGTTTCGCCGGTGATGACGCTCCCCGTGCCGTCTTCCCATCTATCGTCGGTAGA consensus: * * ** **** ***** ***************************** ******************** ******** ******** ***** ***************** ****** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD known....: =================>= 1200~1320: Scer.....: CCAAGACACCAAGGTATCATGGTCGGTATGGGTCAAAAAGACTCCTACGTTGGTGATGAAGCTCAATCCAAGAGAGGTATCTTGACTTTACGTTACCCAATTGAACACGGTATTGTCACC Spar.....: CCAAGACATCAAGGTATCATGGTCGGTATGGGTCAAAAGGACTCTTACGTCGGTGATGAAGCCCAATCCAAGAGAGGTATCTTGACTTTACGTTACCCAATCGAACACGGTATTGTCACC Smik.....: CCAAGACACCAAGGTATCATGGTCGGTATGGGTCAAAAGGACTCCTACGTTGGTGATGAAGCCCAATCTAAGAGAGGTATCTTGACTTTGCGTTACCCTATTGAACACGGTATCGTCACT Sbay.....: CCAAGACACCAAGGTATCATGGTCGGTATGGGCCAAAAGGATTCCTACGTCGGTGATGAAGCGCAATCCAAGAGAGGTATCTTGACTTTGCGTTACCCAATTGAGCACGGTATCGTGACC consensus: ******** *********************** ***** ** ** ***** *********** ***** ******************** ******** ** ** ******** ** ** Smik_spli: BBBB 1320~1440: Scer.....: AACTGGGACGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAATTGAGAGTTGCCCCAGAAGAACACCCTGTTCTTTTGACTGAAGCTCCAATGAACCCTAAATCAAACAGAGAA Spar.....: AACTGGGACGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAATTGAGAGTTGCCCCAGAAGAGCACCCTGTCCTTTTGACTGAAGCTCCAATGAACCCTAAATCAAACAGAGAG Smik.....: AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTATAATGAATTGAGAGTTGCCCCAGAAGAACATCCTGTTCTTTTGACTGAAGCTCCAATGAACCCTAAATCAAACAGAGAA Sbay.....: AACTGGGACGATATGGAAAAGATCTGGCATCACACCTTCTACAACGAGTTGAGAGTTGCCCCAGAAGAACACCCTGTTCTTTTGACCGAAGCCCCAATGAACCCTAAATCAAACAGAGAA consensus: ******** *********************** ******** ** ** ******************** ** ***** ******** ***** ************************** Smik_spli: BBB 1440~1560: Scer.....: AAGATGACTCAAATTATGTTTGAAACTTTCAACGTTCCAGCCTTCTACGTTTCCATCCAAGCCGTTTTGTCCTTGTACTCTTCCGGTAGAACTACTGGTATTGTTTTGGATTCCGGTGAT Spar.....: AAGATGACTCAAATTATGTTTGAAACTTTCAACGTCCCAGCCTTCTACGTTTCCATCCAAGCCGTTTTGTCCTTGTACTCTTCCGGTAGAACTACTGGTATTGTTTTGGATTCCGGTGAT Smik.....: AAGATGACTCAGATTATGTTTGAAACTTTCAACGTTCCAGCCTTCTATGTCTCCATCCAAGCCGTTTTGTCCTTGTACTCTTCCGGTAGAACTACCGGTATTGTTTTGGATTCCGGTGAT Sbay.....: AAGATGACTCAAATCATGTTTGAAACTTTCAACGTCCCAGCTTTCTACGTTTCCATCCAAGCCGTTTTGTCCTTGTACTCCTCCGGTAGAACCACCGGTATTGTTTTGGATTCTGGTGAT consensus: *********** ** ******************** ***** ***** ** ***************************** *********** ** ***************** ****** 1560~1680: Scer.....: GGTGTTACTCACGTCGTTCCAATTTACGCTGGTTTCTCTCTACCTCACGCCATTTTGAGAATCGATTTGGCCGGTAGAGATTTGACTGACTACTTGATGAAGATCTTGAGTGAACGTGGT Spar.....: GGTGTTACTCACGTTGTTCCAATTTATGCCGGTTTCTCTCTACCTCACGCCATTTTGAGAATCGATTTGGCCGGTAGAGATTTGACTGACTACTTGATGAAGATCTTGAGTGAACGTGGT Smik.....: GGTGTCACTCACGTTGTTCCAATTTATGCCGGTTTCTCTCTACCTCACGCTATTTTGAGAATCGATTTGGCCGGTAGAGATTTGACTGACTACTTGATGAAGATCTTGAGTGAACGTGGT Sbay.....: GGTGTTACTCACGTCGTCCCAATCTACGCCGGTTTCTCCCTACCTCACGCCATCTTGAGAATCGATTTGGCCGGTAGAGATTTGACCGACTACTTGATGAAGATCTTGAGTGAACGTGGT consensus: ***** ******** ** ***** ** ** ******** *********** ** ******************************** ********************************* 1680~1800: Scer.....: TACTCTTTCTCCACCACTGCTGAAAGAGAAATTGTCCGTGACATCAAGGAAAAACTATGTTACGTCGCCTTGGACTTCGAACAAGAAATGCAAACCGCTGCTCAATCTTCTTCAATTGAA Spar.....: TACTCTTTCTCCACCACTGCTGAAAGAGAAATCGTCCGTGACATTAAGGAAAAACTATGTTACGTTGCTTTGGACTTCGAACAAGAAATGCAAACTGCTGCTCAATCTTCCTCAATTGAG Smik.....: TACTCTTTCTCCACCACTGCTGAAAGAGAAATCGTCCGTGATATTAAGGAAAAGCTATGTTACGTCGCTTTGGACTTCGAACAAGAAATGCAAACCGCTGCCCAATCTTCCTCCATTGAG Sbay.....: TACTCTTTCTCCACCACTGCCGAAAGAGAAATCGTCCGTGACATCAAGGAAAAACTATGTTACGTCGCCTTGGACTTCGAACAAGAAATGCAAACCGCTGCTCAATCCTCTTCCATTGAA consensus: ******************** *********** ******** ** ******** *********** ** ************************** ***** ***** ** ** ***** 1800~1920: Scer.....: AAATCCTACGAACTTCCAGATGGTCAAGTCATCACTATTGGTAACGAAAGATTCAGAGCCCCAGAAGCTTTGTTCCATCCTTCTGTTTTGGGTTTGGAATCTGCCGGTATTGACCAAACT Spar.....: AAATCCTACGAACTTCCAGATGGTCAAGTTATCACTATCGGTAACGAAAGATTCAGAGCCCCAGAAGCTTTGTTCCATCCTTCTGTTTTGGGTTTGGAATCTGCCGGTATTGACCAAACT Smik.....: AAATCGTACGAACTACCAGATGGTCAAGTCATCACCATCGGTAACGAAAGATTCAGAGCCCCAGAAGCTTTGTTCCATCCTTCCGTCTTGGGTTTGGAATCTGCCGGTATTGACCAAACT Sbay.....: AAATCCTACGAACTACCAGATGGTCAAGTCATTACCATCGGTAACGAAAGATTCAGAGCCCCAGAAGCTTTGTTCCATCCTTCCGTCTTAGGTTTGGAATCCGCTGGTATTGACCAAACC consensus: ***** ******** ************** ** ** ** ******************************************** ** ** *********** ** ************** 1920~2040: Scer.....: ACTTACAACTCCATCATGAAGTGTGATGTCGATGTCCGTAAGGAATTATACGGTAACATCGTTATGTCCGGTGGTACCACCATGTTCCCAGGTATTGCCGAAAGAATGCAAAAGGAAATC Spar.....: ACTTACAACTCCATCATGAAGTGTGATGTCGATGTCCGTAAGGAATTATACGGTAACATCGTTATGTCCGGTGGTACCACCATGTTCCCAGGTATTGCCGAAAGAATGCAAAAGGAAATC Smik.....: ACTTACAACTCCATCATGAAGTGTGATGTGGATGTCCGTAAGGAATTATACGGTAACATTGTCATGTCTGGTGGTACCACCATGTTCCCAGGTATTGCCGAAAGAATGCAAAAGGAAATC Sbay.....: ACTTACAACTCCATCATGAAGTGTGACGTCGATGTCCGTAAGGAATTATACGGTAACATCGTCATGTCCGGTGGTACCACCATGTTCCCAGGTATTGCCGAAAGAATGCAAAAGGAAATC consensus: ************************** ** ***************************** ** ***** *************************************************** 2040~2160: Scer.....: ACCGCTTTGGCTCCATCTTCCATGAAGGTCAAGATCATTGCTCCTCCAGAAAGAAAGTACTCCGTCTGGATTGGTGGTTCTATCTTGGCTTCTTTGACTACCTTCCAACAAATGTGGATC Spar.....: ACCGCTTTGGCTCCATCTTCTATGAAGGTCAAGATCATTGCTCCTCCAGAAAGAAAGTATTCGGTCTGGATTGGTGGTTCTATCTTAGCTTCTTTGACTACTTTCCAACAAATGTGGATC Smik.....: ACCGCTCTGGCTCCATCTTCTATGAAAGTCAAAATCATTGCTCCTCCAGAAAGAAAGTATTCTGTCTGGATCGGTGGTTCTATCTTGGCTTCCTTGACTACTTTCCAACAAATGTGGATC Sbay.....: ACCGCTTTGGCTCCATCTTCCATGAAGGTCAAGATCATTGCTCCTCCAGAGAGAAAGTACTCTGTCTGGATCGGTGGTTCCATCTTGGCTTCTTTGACCACTTTCCAACAAATGTGGATC consensus: ****** ************* ***** ***** ***************** ******** ** ******** ******** ***** ***** ***** ** ****************** 2160~2280: Scer.....: TCAAAACAAGAATACGACGAAAGTGGTCCATCTATCGTTCACCACAAGTGTTTCTAAtctc--tgcttttgtgcgcgtatgtttatgtatgtacctctctctctatttcta-tttttaaa Spar.....: TCAAAACAAGAATACGACGAAAGTGGTCCATCTATCGTTCACCACAAGTGTTTCTAAtctc--tgctttagtgcgtgtatgtttatgtatgtacc--tctctctatttcta-tttttaaa Smik.....: TCAAAACAAGAATACGACGAAAGTGGTCCATCTATCGTTCACCACAAATGTTTCTAAtatc--tgattttgtgtgtgtatgtttatgtatgtacctctctctctatttctattttttaaa Sbay.....: TCAAAGCAAGAATACGACGAAAGTGGTCCATCCATCGTTCACCACAAATGTTTCTAAtctctgtgcttttgtgcgtgtgtgtgtatgtatgtacctctcccccta-------tttctaaa consensus: ***** ************************** ************** ********** ** ** *** *** * ** *** ************ ** * *** *** **** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDDDDDD 2280~2400: Scer.....: ccaccctctcaataaaataaaaataataaagtatttttaaggaa----aagacgtgtttaagcactgactttatctactttttgtacgttttcattgata-taatgtgttttgtct-ctc Spar.....: ccaccctctcaataaaataaaaataataaagtatttttaaggaa----aaaacgtgtttaagcactcactttatttactttttgtacattttcactgtcattaatgtgtttcgtct-ctc Smik.....: ccacccactcaataaaataaaaataataaagtatttttaaggaa----acaacgtgttcaaacgcttacttt-tttaatttttgtacgttttcattgata-taatgtgttt-atct-cat Sbay.....: ccgcccactcaataaaataaaaatatcaaagtgtgttttgcgtatctcattactcttttatgcactcactttatttactttttgtacgttttcattgata-taatgtgttttgtctgtct consensus: ** *** ****************** ***** * *** * * * ** ** * * ** ***** * ** ********* ****** ** * ********** *** Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2400~2520: Scer.....: ccttttctacgaaaatttc--aaaaattga-ccaaaaaaaggaa----tatatatacgaaaaactattatatttatatatcatagtgttgataaaaaat-gtttatccattggaccgtgt Spar.....: catttcccacgataagttc--agaaaatcg-acataaaaaaaag----aatatatacgaataactagtatatttatatattatagtgttaattaaaaat-gtttatccattgtaccgtgt Smik.....: ccttcttttggaaaagttcataaaaattgatccaaaataaaaga----aatatatacgaataattattacatatttatattatagtaataaaaaagtat--tttatccgtaataccatgt Sbay.....: ccatctcttaggaaagtgc--aaaaattaacccaaaaaaaaaaaaaagaatatatatggataattattacata-atatattataatattaataaaaatttttttatctattataccgtat consensus: * * * ** * * * *** * ** ** ** ******* * * ** ** ** ** ***** *** * * * ** * ****** * *** * * Sbay_spli: BBBBBBB 2520~2521: Scer.....: a Spar.....: a Smik.....: a Sbay.....: a consensus: * { alias......: ['LSB3'] chromosome.: 6 description: end........: 203420 exons......: [(1, 47), (166, 1474)] gene.......: LSB3 introns....: [(48, 165)] length.....: 1474 name.......: YFR024C-A plength....: 491 start......: 201947 tdist......: 66728 type.......: ORF up.........: 0 } Scer: 3 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 161)] ->[('Scer', 356)] ->[('Scer', 739)] ] [ ->[('Scer', 314)] ->[('Scer', 421)] ->[('Scer', 2016)] ] 0~120: Scer.....: tctgattatcttgaactggatgtacataaaaaaaaactgtcatataaactcatgtacagctgtgtagaagtgaatgatctttccaagaaaaaaatttcacactgaattgattgaattgac consensus: ************************************************************************************************************************ 120~240: Scer.....: tgctcattttatattgggtgcccaaattgtctttctttattgttcgtttagtagcagcaccctgtttgctcgccgactcggccgcatctggaagttcaacatgaaagagtataaactatc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: gaagaaatctagaacggctttggatcacgggtggcaaagaaatcaaaaacaaaagctgtatcacacgcaATGGGTATTAACAATCCTATTCCAAGGAGTTTAAAGAGTGAGACAAAGTAT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDD known....: >=== 360~480: Scer.....: GTTTTATACGGGTTTGGCTGGGAAACCTTTAAAAAAGTTCTCCCTTAATTTGTTCATCATTTACTAACTAGTAATAAACAATTAATAAAGAAAAGCAGCGAAGATTTTGGCTAGTTTTGT consensus: ************************************************************************************************************************ Scer_spli: DD BBBBBBB known....: ================================================================================================================>= 480~600: Scer.....: CAAACCAAACCAAGTTTTTGGTGCGGACCAAGTCATTCCTCCAGACGTTTTGAAAAGAGCTAAAGGGTTGGCTATCATAACGATCTTAAAAGCAGGTTTTCTATTTTCAGGTAGAGCTGG consensus: ************************************************************************************************************************ 600~720: Scer.....: TTCTGGTGTGATTGTCGCAAGATTAAAGGATGGTACTTGGTCAGCTCCATCTGCCATTGCCATGGCAGGTGCTGGTGCCGGTGGGATGGTTGGTATAGAATTGACTGATTTTGTTTTCAT consensus: ************************************************************************************************************************ 720~840: Scer.....: TTTAAATACTCAGGATGCTGTTAAGTCGTTTTCTGAATTTGGGACCATCACGTTGGGTGGTAACGTCTCCGTTTCTGCTGGGCCTCTTGGTAGAAGTGCAGAAGCAGCTGCATCAGCCTC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 840~960: Scer.....: CGCCGGTGGTGTGGCTGCAGTTTTTGCCTATTCTAAGAGTAAAGGTCTATTTGCAGGGGTTTCTGTGGAAGGTTCGGCTATTATAGAAAGAAGAGAGGCTAACAGAAAATTTTATGGTGA consensus: ************************************************************************************************************************ 960~1080: Scer.....: CAATTGTACCGCGAAAATGATTTTGTCTGGTAGGATAAGACCGCCTCCAGCAGTTGATCCATTGTTTCGTGTTTTAGAGTCCAGGGCGTTTAATTACAGACCCTCCAACGGTGGTCGTGG consensus: ************************************************************************************************************************ 1080~1200: Scer.....: CAGTTTCGATGACGACGAAGACGATTACTATGACGACGACGATTACTATAATGACATTCCTAGTTCATTCAGTTCTACAGATGCTTCCTCCACTAGACCTAACACAAGATCCACAAGGAG consensus: ************************************************************************************************************************ 1200~1320: Scer.....: AAGAGCCCAAAGCGGTTCTCGTTATACGTTCGACGATGATGATGACGATGATGATTATGGTACTGGCTATTCAAGGAATTCAAGACTGGCTCCTACCAACAGTGGCGGTAGTGGTGGTAA consensus: ************************************************************************************************************************ 1320~1440: Scer.....: ATTGGATGACCCATCTGGAGCTTCAAGTTATTATGCCAGCCACAGAAGATCAGGAACTGCTCAGTCAAGGGCTCGTTCTTCAAGAAATCGTTGGGCTGATGATGAATACGATGATTATGA consensus: ************************************************************************************************************************ 1440~1560: Scer.....: TGATGATTATGAATCCGGGTATAGACGCGGGAATGGAAGAGATAGGACAAAAGACCGTGAAGTCGATGACTTGTCGAACAGATTTTCTAAATCTAGAATCTCGTCCGCTTCAACACCGCA consensus: ************************************************************************************************************************ 1560~1680: Scer.....: AACTAGTCAGGGCAGATTCACTGCTCCAACATCCCCATCCACGTCTTCTCCAAAGGCCGTGGCATTATATAGCTTTGCAGGAGAAGAGTCCGGAGATTTACCATTCAGAAAGGGTGACGT consensus: ************************************************************************************************************************ 1680~1800: Scer.....: GATCACAATTTTGAAAAAATCAGATTCTCAAAATGACTGGTGGACCGGAAGAGTCAACGGTAGAGAAGGTATATTCCCAGCAAATTACGTTGAACTAGTTTAAaaaatttgaaggagagt consensus: ************************************************************************************************************************ 1800~1920: Scer.....: aaagaatacgagaaacgttattgatttacacttataccttttgccttacagtttatcagcactcggacctaaatacatatcatatagcagacggcgtccctctgtctatccttttaagaa consensus: ************************************************************************************************************************ 1920~2033: Scer.....: ttttttccataataataatttttaataatatctaaatataacgaaaaagattgaattagtgtaaataaaaaaaataaataaggaaaactctagctaaattaacaaagagacat consensus: ***************************************************************************************************************** Scer_spli: BBBBBBB { alias......: ['RPL2A', 'RPL5B'] chromosome.: 6 description: Ribosomal protein L2A (L5A) (rp8) (YL6) end........: 221405 exons......: [(1, 4), (152, 912)] gene.......: RPL2A introns....: [(5, 151)] length.....: 912 name.......: YFR031C-A plength....: 304 start......: 220494 tdist......: 48743 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 2 donors and 3 branches Smik: 1 donors and 4 branches Sbay: 1 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 737), ('Spar', 737), ('Smik', 737), ('Sbay', 737)] ->[('Spar', 59)] ] [ ->[('Scer', 843), ('Spar', 843), ('Smik', 843), ('Sbay', 843)] ->[('Scer', 1112), ('Spar', 1112), ('Smik', 1112), ('Sbay', 1112)] ->[('Smik', 96)] ->[('Smik', 1832)] ->[('Spar', 536)] ] 0~120: Scer.....: atctttataaaattgaaaagggggtataaacagtgagaa-cttaacataaaatacatatattcgtttattgctaagt--aaactaaaattgatctatta-------tttttcttttcttt Spar.....: agctttatacaattg-agatggagtacaaacagtaagaa-agtgacataaaatacatatgttcgttaatggctaaat-aaaactaaattctacctatta-------------ttttcttt Smik.....: tgacttaagcatttaataaggaagtataaacagtgaaaagcgtaaattagaatacatatattctttaatggctaaataaaaactaaatactattactac-------taactattcatttg Sbay.....: ---------------------agctctgcgcaacgaatc-caccaccaccaacacatatattc-ttcatagctaaat-aagattaaagccattcttttaaaaaaaaaaataaacatgttc consensus: * ** * * ** ****** *** ** ** ***** * * * **** * ** Spar_spli: DDDDDD Smik_spli: BBBBBBBBBBBBBB 120~240: Scer.....: tcttttgcggctgggggaaccccttttaagacaa-aataagacttttttcacccgtacat-ttttaacaccca-attcctttccggctccaactttctttttttttcgaaaatgatga-g Spar.....: ccttttgcggc-aatgcaatactttcgaagacta-tgca----cttcttcatccgtacatcctccaacaccca-tttcttattcgtgtaagagctgctttttt-----aaaataatgagg Smik.....: ctttttacagccgcg----caccccttagaaaaa-gaca----gtttttaacccagacatctttcaacacccataattgtttttttacgcgacagagtttttt---cgagaacggactag Sbay.....: ttctttacggc-aacctgatccttctgaggaccgccgca----cattaccacccgtgcatcttgtaacaccc--atttcttttaatg---gtttttgttttttcaccgagtttttttttg consensus: *** * ** * * * * * * ** *** * ******* * * * ****** * * 240~360: Scer.....: cttagtcctgcgtccgcttcccaaagaaaaaatgcgtaagcctctttcacttcggcagctcactcttcccactttcc---ctgtattcgaaggtaccgtaggcagaggcctatcctcatt Spar.....: ccttgctctgcgcgcgctttccaaag-aaaattgtgaaagcctcttacctcatggtctcccacttttcccacttccccttctgcgtccgttagtactgtagacagaggtccgtcccaatt Smik.....: ttttgctttgcgttgctatatccaagtattggtg---gaatttctctcttcctcgt------ctctccccgt--------ctgcattcgaaggtattgtagacagagatctat-ctgttc Sbay.....: ttt--tcaagtagaccctatattgcgtgccctcgcttaaaacccttccggtctcgccgct-actcggcccgcccactggcaggccctccaaacagggatccgtgtctctctcccctggcc consensus: * * * * * ** * * ** *** * * * * * 360~480: Scer.....: ctcccactgtgtaaactaggcgttctgcctagcggctaagcgttctccgcgtattgtttcaccg-------------------------ttgggcctacggtcgatggtttggcattgct Spar.....: -tcctggtaaacatacaggcagttctgcctagcggccaagctttccccgcctactctgccactgcttccaagcagggctccagtatggtttggacctacagtcaatggtttggcatcgct Smik.....: ctccctgtgagcgatcaagcaggtttgcccagcagcaaagcggtctcctcctagctccttgtag-taccgagcagtgcagtagtaccgctttactctgcgagcgaatgcttcacagcgct Sbay.....: cttccggcgaaaccagcattggttctgcctggc-tccagcagttctccttctaagatagaactgttcccagc--aggctttggaacaactttcccccaggagcgatggtctggtgctgct consensus: * * * * **** ** * * ** ** ** * ** * * * * * *** 480~600: Scer.....: -c------tgcacgatcagatcaatctggaatagtatgggaattgccaaa-cgcagca--------ccagtgcacatggatgtgaacctatggattactacgcaatgc---actatcgca Spar.....: -c------agcaggatccaatcactctggcatagtatgggaattgccaaaccgcaccactaactagccattgcacatggatgtgaacctatcgattactacgcaatgc---actatcgca Smik.....: ac------tgtagtatccaatcactctagcatagtgcaggaatggcaaaatcgtatcactga----ccattgcacatggacgtgaatccacaggtcactacgcaatgt---actatcgca Sbay.....: gcccgctgtgtaggatctagtcgctgtggaatagtatgggaatggccaaactag------------ccgttgcgcatgggtgtggaacggacggttactatgcaatacactactactgca consensus: * * * *** ** * * * ***** ***** ** *** ** *** ***** *** * * * * **** ***** **** *** Spar_spli: BBBBBBB 600~720: Scer.....: taggcataatcgattgaaccctgcccctcccctccttcaatatcattacctcgttttttttattattgggtcatttt-ttagcgactaataaccatttctgagcaaactaagaaaccatt Spar.....: tacgcatgatcgattgaaccct---cccctcctccttcagtatcatcagcacgtatttctcttactagggtcttttt-ttagtgaataataactatttctgagtcaaccaagaaaccatt Smik.....: tacacataattgattgagc------acccccctctgtcgttacattaatcacatatttcacttgcctgggtctttttctttgttatttgtaacaacttctaagctaaccaagaaaccatt Sbay.....: tacacataatcgatctggc--------------ctgccattgttataatcacatatttcttccattgggttccctctttccagttcttgccagtcttttt-agcaaaccaagaaaccata consensus: ** *** ** *** * * * * * * * * * *** ** ** * * * * * ** * ** *** ********** 720~840: total....: ====== Scer.....: agatcaataagcaATGGGTATGTCAGCACCGTGATTTAACAACCATGTGATTGTCGTAATGGCGCAATGTCATCACACCCTTTTACAGTCTTTTTATTCCTTTTGTTGAAAATGTATCGT Spar.....: agatcaataagcaatgggtatgttagcattatgttttagcaac--tgtgaatgtcgtagtggcgcaatgtcatcgcaccctattatagttcatttattcctttcgttgaaaatgtatcat Smik.....: agatcaataagcaatgggtatgttaacactacgctctggcaagtgtgtgattaccgtaaagacacaatgtcatcgcaccccacttaagctcttttat--cttcagttgaaattatagcac Sbay.....: agatcaataagcaatgggtatgttgaaattacactcgaaaaccgttgccactacggatatgcca-----tcgcagagcagcattgcagcctcgttggcccattctttttca-tgt-ccat consensus: *********************** * * * ** * * * * * ** * * ** ** * * ** * * * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >====================================================================================================== 840~960: total....: ======= Scer.....: GTATACTAACAGAACTGTGTT--TTTTCTCATTATTTTTTATTCAGGTAGAGTTATTCGTAACCAAAGAAAGGGTGCTGGTTCTATCTTTACCTCCCACACCAGATTGAGACAAGGTGCT Spar.....: ctgtactaacagaactgtgtt--tcttctcattatttttcgttcaggtagagttattcgtaaccaaagaaagggtgctggttctatcttcacctcccacaccagattgagacaaggtgct Smik.....: gtatactaacagaattatgtttatttcctcattatttttcgttcaggtagagttattcgtaaccaaagaaagggtgctggttctatcttcacctcccacaccagattgagacaaggtgct Sbay.....: ttatactaacaagactatgc---tttccgcattacttttcatccaggtagagttattcgtaaccaaagaaagggtgctggttccatcttcacctcccacaccagattgagacaaggtgct consensus: * ******** * * ** * * * ***** **** * **************************************** ***** ****************************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ============================================>= 960~1080: Scer.....: GCCAAGTTGAGAACTTTGGATTATGCTGAACGTCACGGTTACATTCGTGGTATCGTTAAGCAAATTGTCCACGACTCCGGTAGAGGTGCCCCATTGGCCAAGGTTGTCTTCCGTGACCCA Spar.....: gccaagttgagaactttggattatgctgaacgtcacggttacattcgtggtatcgttaagcaaatcgtccacgactccggtagaggtgccccattggccaaggttgtcttccgtgaccca Smik.....: gccaagttgagaactttggattatgctgaacgtcacggttacatccgtggtatcgttaagcagattgtccacgactctggtagaggtgccccattggccaaggttgtcttccgtgaccca Sbay.....: gccaagttgagaactttggattacgctgaacgtcacggttacatccgtggtatcgtgaagcaaatcgtccacgactccggtagaggtgctccattggccaaggttgtcttccgtgaccca consensus: *********************** ******************** *********** ***** ** *********** *********** ****************************** 1080~1200: total....: ======= Scer.....: TACAAGTACAGATTGCGTGAAGAAATCTTTATTGCTAACGAAGGTGTCCACACTGGTCAATTCATTTACGCCGGTAAGAAGGCTTCTTTGAACGTCGGTAACGTCTTGCCATTGGGTTCT Spar.....: tacaagtacagattgcgtgaagaaatcttcattgctaacgaaggtgtccacactggtcaattcatttacgccggtaagaaggcttctttgaacgtcggtaacgtcttgccattgggttcc Smik.....: tacaagtacagattgcgtgaagaaatcttcattgctaacgaaggtgtccacactggtcaattcatttacgccggtaagaaggcttctttgaacgtcggtaatgtcttgccattgggttcc Sbay.....: tacaagtacagattacgtgaagaaatcttcattgctaacgaaggtgtccacactggtcaattcatttacgccggtaagaaggcttctttgaacgtcggtaacgtcttgccattgggtgtc consensus: ************** ************** *********************************************************************** *************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1200~1320: Scer.....: GTCCCAGAAGGTACCATTGTCTCCAACGTTGAAGAAAAGCCAGGTGACAGAGGTGCCCTAGCCAGAGCT-TCCGGTAACTACGTTATTATCATCGGTCACAACCCAGACGAAAACAAGAC Spar.....: gtcccagaaggtaccattgtctctaatgttgaagaaaagccaggtgacagaggcgctctagctagagct-tctggtaactacgttatcatcattggtcacaacccagatgaaaacaagac Smik.....: gtcccagaaggtaccattgtttccaatgttgaagaaaagccaggtgacagaggtgctctagccagagct-tctggtaactacgttattatcattggtcacaacccagatgaaaacaagac Sbay.....: gtcccagaaggtaccattgtttccaacgttgaagaaaaaccaggtgacagaggtgctctagctagatctctctggtaactacgttatcatcattggtcacaacccagatgaaaacaagac consensus: ******************** ** ** *********** ************** ** ***** *** ** ** ************** ***** ************** *********** 1320~1440: Scer.....: TAGAGTCAGATTACCATCCGGTGCCAAGAAGGTTATCTCTTCTGATGCCAGAGGTGTCATCGGTGTCATTGCCGGTGGTGGTAGAGTTGACAAACCATTGTTGAAGGCTGGTCGTGCTTT Spar.....: cagagtcagattaccatccggtgccaagaaggttatttcttctgacgccagaggtgtcatcggtgtcattgccggtggtggtagagttgacaagccattgttgaaggctggtcgtgcttt Smik.....: cagagtcagattaccatccggtgccaagaaggttatttcttctgacgctagaggtgtcattggtgtcattgctggtggtggtagagttgacaagccattgttgaaggctggtcgtgcttt Sbay.....: cagagtcagattaccatccggtgccaagaaggtcatttcttctgacgccagaggtgtcatcggtgtcattgccggtggtggtagagttgacaaaccattgttgaaggctggtcgtgcttt consensus: ******************************** ** ******** ** *********** *********** ******************** ************************** 1440~1560: Scer.....: CCACAAGTACAGATTGAAGAGAAACTCTTGGCCAAAGACCCGTGGTGTTGCCATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACCATCTC Spar.....: ccacaagtacagattgaagagaaactcttggccaaagacccgtggtgttgccATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATATC Smik.....: ccacaaatacagattgaagagaaactcttggccaaagacccgtggtgttgccATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTC Sbay.....: ccacaagtacagattgaagagaaactcctggccaaagactcgtggtgttgccATGAATCCAGTTGACCATCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATTTC consensus: ****** ******************** *********** ************************** ** ******************************************** ** ** 1560~1680: Scer.....: TAGAGGTGCTGTTTCTGGTCAAAAGGCCGGTTTGATTGCCGCCAGAAGAACTGGTTTGTTACGTGGTTCTCAAAAGACCCAAGATTAGattatgtaaaatagtcattctttaagcaagat Spar.....: TAGAGGTGCCGTTTCTGGTCAAAAGGCCGGTTTGATTGCCGCCAGAAGAACTGGTTTGTTACGTGGTTCTCAAAAGACCCAAGATTAGattatgtaaaatagtcattctttaagcaagat Smik.....: TAGGGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGAACTGGTTTGTTACGTGGTTCTCAAAAGACCCAAGATTAGattatgtaaagtagtcattctttaagcaagat Sbay.....: TAGAGGTGCCGTTTCTGGTCAAAAGGCCGGTTTGATTGCTGCCAGAAGAACTGGTTTGTTACGTGGTTCCCAAAAGACCCAAGATTAGattaagtaatatactctttcttttagcaatat consensus: *** ***** ***************** *********** ***************************** ********************** **** ** ** ****** ***** ** 1680~1800: Scer.....: ct--aaaaaaaaaaagataactcaaaaaattcctcaaagc-a--aacaatacaatataacataacactta-tttttaaagaaaaatttctaaattagattttgttctgtagtaatagaat Spar.....: ttaaaaaaaaaaaaagataactc-aaaaattcctcaaagcga--aacaatacaatataaca--acacttattttttaaagaaaaatatctaaattagtttttgt-----agtaatagaat Smik.....: tt-------aaaaaaaataactc-aaaaaatcctcaaaac-a--aacaatacaatataacataagacttattttttaaagaaga--ttctaaattaatttttgttctgtagtaataaaat Sbay.....: t------------aaaataacac--aaaaattctcaaaacaaacaacaatacaatataacataacacttatttttttaaatag----tctagattagtttttgttctgtagtaataagat consensus: ** ***** * **** * ****** * * ***************** * ***** ***** ** * **** **** ****** ******* ** 1800~1920: Scer.....: atttcttcaaagtaaa--ctttaatatactctcataagctccccccttctcccctgtgaagcattgcttcatggaggg---ggttgacttcttgaataaaatggctttctgc---cttac Spar.....: atttcttcaaagtaaaatctttagtacactcttataaaacgttcc---ctcactcgtgaagcattgttccgtgggtgatttgttttcttgcttggataagatggctttatac---ttcac Smik.....: acttctccaaagtaatatctattgtgtaatcttactaattcttt----ctcgttcacaacccatcatttgtttgatagtttgttttcttctcttaatatgac-gctttctacgcttttac Sbay.....: atttcctc-aagtaca---tgtagcattttcttaccaaacgacatacaaccaacctcg-tccgtcaccaaactcacag--tagtttttttcttgttcaatggatgattgtaca-gcttac consensus: * *** * ***** * * *** * * * * * ** * * * ** * * * ** Smik_spli: BBBBBBB 1920~2040: Scer.....: gcgtttatagtgattaccgtgttgcgtggctctgatgatgggcatttctaattttaagatcaacaacagta-aacacacggtgca-gtcaagaaatctcgaggcagaccacgtaa----- Spar.....: gcgtttatagtgattagcgtgttgtgcagttctggtgatgggcatttgtaattttaagatcaacaagagca-aacaatcggcacaggtaaggaaacctcgaaacagaggacgcaa----- Smik.....: gcgtttatagtgattagcgtgtctttcagttcagatgattagcatttgaaattcgaagatcaacaagagta-aacaatcaactcacctaagtcaatctcgaggcggaagacgcaa----- Sbay.....: gcgtttatagtgattagcgcgttttg-agttttgatga--ggctattgaaattt-aagatcaacaaaacaatagtaaacatcatc-atctccaaacctcgaggtacggggcatatttgaa consensus: **************** ** ** * * * *** ** ** **** *********** * * * * * * ** ***** * * 2040~2075: Scer.....: ------atacaagtcaattttagtatcgttaccgc Spar.....: ----acacacaagtcaattttagcatttttactgc Smik.....: ------gcacaagtcaattcgagcactgttactgc Sbay.....: gcataaatacaactcgatattagcattattactcc consensus: **** ** ** ** * **** * { alias......: ['RPL30'] chromosome.: 7 description: Large ribosomal subunit protein L30 (L32) (rp73) (YL38) end........: 439634 exons......: [(1, 3), (234, 548)] gene.......: RPL30 introns....: [(4, 233)] length.....: 548 name.......: YGL030W plength....: 182 start......: 439087 tdist......: 439087 type.......: ORF up.........: 1 } Scer: 6 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 54)] ->[('Scer', 1159)] ->[('Scer', 1447)] ->[('Scer', 1495)] ->[('Scer', 1630)] ->[('Scer', 1709)] ] [ ->[('Scer', 1343)] ] 0~120: Scer.....: tttatcactatattaatccacgtttttcaaacatatttgaaaaaaaaaatgttagtaagtctatgcttttcataggtagccatcttgtcaatataaataatggtaatccgcatggttgtt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: caggcgttcgcaaaattgtaggaagaggagaacgtggaaatatggactttttgcaaattcagaattcattttactaggttcttgcaacatggataacatctcacgctgttatttttcatg consensus: ************************************************************************************************************************ 240~360: Scer.....: cttctccatatcgtatatatgtaatgaagcattttcattgggtttcctgctcaaaggttgacatatattataagttatactggaacaagccacaatcctgtcaaagtctaaattccggtg consensus: ************************************************************************************************************************ 360~480: Scer.....: tattggctatctgaagctctctcatatattaatacattgctttctagcacaacgctgccctcggtcgccattaattatgaatcatcatcatatagggacatacctctcaagttattgtct consensus: ************************************************************************************************************************ 480~600: Scer.....: tggtgtcttgcttaacttggcaatagcaacagcgcaaactgcgtaaacgtactaaaatacacaccatccgttgaatatatcatgcagtacattgacagtatatcacttctggataggacg consensus: ************************************************************************************************************************ 600~720: Scer.....: ccaaccgccagtctgtgtggtatttcctcccgtctctgcgtgccagacgggatcagcccgtctattctcgtgtcgtcctgcctggagagactgaacccccatctagcaccgcagtaagga consensus: ************************************************************************************************************************ 720~840: Scer.....: tcattactttgtaggcgggaaataagaggttcaacaaggaccaaaaaaaaaaacactaaaatctgagatcaaaaatatgtggtgcacagatgtaacgttccaaaatgtatggatggtaag consensus: ************************************************************************************************************************ 840~960: Scer.....: gtctttttccaagaaacgtatctttttttcagctagggccgcatttaaatttttttttttttcaattttttttcctattggagacggaatggcaaagctcacgctgggcgatagcacgta consensus: ************************************************************************************************************************ 960~1080: Scer.....: accacgctggtgtattttcatcctaatcattctctttcatctatttcgataagctacttaatgtcgaagttttaacttccatttgttggaatgttcattacagtttatacttactccttg consensus: ************************************************************************************************************************ 1080~1200: Scer.....: ctcttttataatataaccaaacagaccggagtgtttaagaacctacagcttattcaattaatcaatatacgcagagATGGTCAGTATAACATGATTTTATAACTATTTCGCTTTATTCTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >======================================== 1200~1320: Scer.....: TCATGGGATTAGCAAGAAGGCTTGGAATACAAACATGAATTTTCAAAGTTTATTCCTGCTCTTGTGTTTGAGAGAGTCCGTTCAAAGGATGCTTCTCCATGACTGTGAAATAAAAGTGAG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1320~1440: Scer.....: ATATGCAAAAACTTTGAATAATCTACTAACAAGTTAATACGTTATTTTTTATCGTTTACATTTCAACAGGCCCCAGTTAAATCCCAAGAATCTATCAACCAAAAGTTGGCTTTGGTTATC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ===================================================================>= 1440~1560: Scer.....: AAGTCTGGTAAGTACACCTTAGGTTACAAGTCCACTGTCAAGTCTTTGAGACAAGGTAAGTCTAAGTTGATCATCATTGCCGCTAACACTCCAGTTTTGAGAAAGTCCGAATTGGAATAT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD 1560~1680: Scer.....: TACGCTATGTTGTCCAAGACTAAGGTCTACTACTTCCAAGGTGGTAACAACGAATTGGGTACTGCTGTCGGTAAGTTATTCAGAGTCGGTGTTGTCTCTATTTTGGAAGCTGGTGACTCT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1680~1800: Scer.....: GATATCTTGACCACCTTGGCTTAAataaggtaagttcaaacgatttgttggaagacaattggtttgatgtgtatttttctataatatataaatcttagactattcattaaccttatttta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1800~1920: Scer.....: tttaccttctacccgaaaatgggtttcttttgctgaaatagttctttcatgtaaatattgtttaagcagaaggcattctttgccctcttgctcgtgtgggttcctttccgctaataatca consensus: ************************************************************************************************************************ 1920~2040: Scer.....: atcattctcatactgttcaatatcataattatctctgcgacgatttttcatccgcctcctccgaaactggaaaaagcgatgagataaaattttcaggaatccatcagcaattttatatga consensus: ************************************************************************************************************************ 2040~2128: Scer.....: tagatagaagtctattacgttgagcttccaattttaaaggaatactgtccatattcattgaaagcaaaataaaacataaccaggaaat consensus: **************************************************************************************** { alias......: ['HOP2'] chromosome.: 7 description: Meiosis-specific gene required for the pairing of homologous chromosomes end........: 436347 exons......: [(1, 55), (126, 727)] gene.......: HOP2 introns....: [(56, 125)] length.....: 727 name.......: YGL033W plength....: 242 start......: 435621 tdist......: 435621 type.......: ORF up.........: 1 } Scer: 6 donors and 2 branches Spar: 3 donors and 6 branches Smik: 7 donors and 3 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 3568), ('Spar', 3568), ('Smik', 3568)] ->[('Scer', 422), ('Spar', 422)] ->[('Scer', 10)] ->[('Scer', 1930)] ->[('Scer', 2515)] ->[('Scer', 2929)] ->[('Smik', 36)] ->[('Smik', 263)] ->[('Smik', 781)] ->[('Smik', 947)] ->[('Smik', 1079)] ->[('Smik', 3673)] ->[('Spar', 1153)] ] [ ->[('Scer', 2973), ('Spar', 2973), ('Smik', 2973)] ->[('Scer', 3611), ('Spar', 3611), ('Smik', 3611)] ->[('Spar', 425), ('Smik', 425)] ->[('Spar', 561)] ->[('Spar', 2010)] ->[('Spar', 2838)] ] 0~120: Scer.....: ggctatggtagtatgtcgtctccactatactcaactctc-gtgtagttacaagcgagctagaataaatggctctcttatcttcgaaatgctttaccg-ggctttcttactctcctttgtc Spar.....: ggctatagtactatgttgtcttcactagactcagctctaagtgtaattacaagtgagctataatgaatggttctcttatcttcaaaatgctttaccg-ggctgccttactctcctttgtc Smik.....: agtcagagtactgtactgcctttgatagactcaactgtaagtatatttacaagcaaattataacaaatggttttcttatcttctaaatgttttaccaaggctgccttacttttctttgtc consensus: * * *** * * * ** ** ***** ** * ** ** ******* * ** ** ***** * ********** ***** ****** **** ****** * ******* Scer_spli: DDDDDD Smik_spli: DDDDDD 120~240: Scer.....: ttcgttaatgagtactggggtgaaaaaaaagggttataataaataaattatccaagaacgactattctcttttcttttttctgcttgctctt-ccccacttttctcgtccagcctgttgt Spar.....: ttcgttaatggatactggggtgaaaaaaa---gttataataaataaattatccgagaacgactattttcttttcttttttctgcttgctctt-ccccacttttctcgtccagcctgttgt Smik.....: ttcgttaatgaataccggggtgaaaagaaaa-gttataataaataaattatccgaggaccattattttcgtttcttttttctgcttgctctttccccactttcctcgtccggcctgttgt consensus: ********** *** ********** ** ********************* ** ** * **** ** ********************** ********* ******* ********* 240~360: Scer.....: aaaaatttgttgttgcttctttcgta-ttagtttttccgaaagaaagcgccgcagggcctttaccatcactccaggttttcccggagtggggtggcagtccgcagtctctcgcgaaatca Spar.....: aaaaatttgctgttgcttccttcgtacttagtttttccgaaagaaagcgccgcagggccttcgccatcactccaggttttcccgaagtggggtggcaggccgcagtctctcgcgaaaaca Smik.....: aaaattttgttgttgcttccttcgtacgtagtttttccgaaaaaaagcgccgcagaac-tccgccgccactccaggttttcccgaagtggggtggcaggtcacagtcactagcaagaaca consensus: **** **** ********* ****** ************** ************ * * ** ***************** ************* * ***** ** ** * * ** Smik_spli: DDDDDD 360~480: Scer.....: aaggcaacaagcaga------cacgtggagaaaa-gccaggagaactcaagagctcgaacaagtatgctagcaactaaacaagccggcctacgccactctggagtttctcgcggggcccg Spar.....: aaggcaacaagcata------cacgtggagaaaaagccaggaaaactcaagagcttgaacaagtatgctaacaagtaagcaaacagacttacgccactccggagtttctcacggaggccg Smik.....: aaggcgacaaacagagcagagcacgtggagagataaactcaagagctt----gcttgatcaaatatgctaacaagcaagtaagcagactcacgccgctccggagtttcctagatgggcca consensus: ***** **** ** * ********** * * * * ** *** ** *** ******* *** ** ** * * * ***** *** ******** * ** Scer_spli: DDDDDD Spar_spli: DDDBBBBBBB Smik_spli: BBBBBBB 480~600: Scer.....: gccgctacaggtttcctgagaagccattataa-tggcaactacattcatcaacactccataaaatccta-tcgagttacactgctagtgtcgcaattgcgcttttctgctgcttaattgt Spar.....: gccgctataggttccctgaaaagctattataa-tggcaactacattcatcaatgctccccaaaatccta-tctaccaacactactaatatcgtaattgcgcttgtctgctgcttaattgt Smik.....: gccagtatttgttaactgggaagctattacaaacgactactgcatccattaaaactctatactatcgtaatcgagttacactgctactatcgtaattacgcttgtttgttgcttcactgt consensus: *** ** *** *** **** **** ** * * *** *** *** ** *** * *** ** ** * ***** *** * *** **** ***** * ** ***** * *** Spar_spli: BBBBBBB 600~720: Scer.....: gggccc-caagctcttatcacttgctaccat-cctataaactgtatggaatgccatcacaactttcgg-aaaaataaagcgcttttt-tacgctatcagtggagatattacgaattaggc Spar.....: ggggccacaagttcttatcacttgctacaat-tct--gaattgtataggatgccaacacgagtttcgggaaaaatagagcgctttttgtacgctatcagtggaaatgttgcgaattaggc Smik.....: ggtgacccaggttcttatctctcactacaatgttttttaattgcataaag-accaacacgggtttcgagaaaaatagagcgcattttgtgcgctatcag-agcgatgttgcgagttaggc consensus: ** * ** * ******* ** **** ** * ** ** ** *** *** ***** ******* ***** **** * ********* * ** ** *** ****** 720~840: Scer.....: acagggaagaaatagataaaaaattcatggggccaa--ccccagacgtcaatcttctacacgtcaagttttgaaaaaaattaaataaaaaataaaaaaaaaa--accggcgcgaaggaaa Spar.....: acaagaaagagaaagataaata--tcgtggggccaa--ccccagatgtcaatcttccatacgtcaattcttaaagaagattaaataaaaaataaaaaaagaatcaccggcgcgaggggaa Smik.....: acaagaaccaaaatgataaaaaattggtggggccaaaaccccggacgtcaatctt-tacgcgtcagtttc---gttaggctaactaaaaattgaca----------cgacctgaggggtt consensus: *** * * * * ****** * * ********* **** ** ********* * ***** * * *** ****** * * * ** * ** ** Smik_spli: DDDDDD 840~960: Scer.....: cgtgctggctcgctaacttctagtcttactgtactgactaccttccagtcctactggttatactgcattgtacggcaacttacacaccccacgcacttactttcctccacaatgccatct Spar.....: cgtgttggttggtcaacctttagtcttgctgaattgactactttccagtcttactggttgcgctgcattgt-tggccttttacacaccccacgcacccactttcctttaaaatcttactt Smik.....: ggagttgatt-gtttacccttggtcttgttacattgactactttccaatccaagtggttgcactgtatttt--aaccatttacagtccctgtgttctcacgtgacgtgtatgaattgtt- consensus: * * ** * * ** * ***** * * ******* ***** ** * ***** *** *** * * ***** *** * * ** * * Smik_spli: DDDDDD 960~1080: Scer.....: ag-aaaaatcgattacccgc-taattttccgggaaaaa----gtcgattaatgtaggttagtggcagctatgctaagcaatgataaaggaaccat----------------aca------ Spar.....: aggaaaaatagatcacccgccttattttccggtaaaaaagaagtcgat-aacgtagactagtggccgctatgctcagcaatgatgaggaagccatggttttaaagttgt--acatggaga Smik.....: ----aacactacgagtcctttaaattcttcttgaaaaagaaggtagttaaatg--ggccaatttgcgccctgct-agaatggatgttaaagtcaagaaaaagacaagctggttacgtagg consensus: ** * ** *** * * ***** ** * * ** * * * * ** **** ** * *** * ** * Smik_spli: D 1080~1200: Scer.....: -cgata-tttctacagaaggctatt-aaatagggtgaaataggatgaagcaacaatcaaaaattatgaaa-gcat-ccgttttctcgctattct-aataatgggacagaactgccaattc Spar.....: gcgata-tatgtgcagaaaaatatttgaacagcgtaaaataagattaaacaacaatcaaaaaataagaaatgcgt-tcgttttctcttttttctcaataat--gacagaattgctagttc Smik.....: tcagtagtatatgtaggcagc-atagtaaagacgtca--tagtgcagaagaagagtcgaacaaaagaaaacacgtgttcattttttttttgcctcggtatt--gacaggatcgggagatc consensus: * ** * * * ** ** ** ** * ** * ** * ** ** * * *** * * *** * * ** ** * ***** * * * ** Spar_spli: DDDDDDD Smik_spli: DDDDD 1200~1320: Scer.....: ttgatctggtgatccatacgattaaaataggggttcatcgcatggaaagtctgtaaatcacacttgcctaccataaggaagtcatcaattcccgaattttaaacgggtttctatgagtat Spar.....: ttgatctgatgactcaaatggttaaataagg--cttatggcaccataagtccgcaggtcgcacttgtctgccacagggaattcataaatcgccaaattcaaagccgtcttctttaagcct Smik.....: ttgatatgataatccgcatgctactaa............................................................................................. consensus: ***** ** * * * * * * * *** * ** *** ***** * * ** ****** ** *** * **** **** *** ** **** ** * * **** * ** * 1320~1440: Scer.....: ttggaggatgttcattcttggtaacattactgatgacattcagtgatacactgccttcaaggaaacacacgcgatagaggcaaaacaatgttgcaacggcaattaat-ttctgtcattgt Spar.....: ttggagaatggtttttgctggtaacacaatcgatgacattcattggtgtactccctctaaggaaacccacacgatagagacaaaacgatgtggtcacggcaagtactacttcaccgttgt consensus: ****** *** * ** ******** * *********** ** * *** *** ******** *** ******** ****** **** * ******* ** * * * **** 1440~1560: Scer.....: aatgaatttctgctcg------------------------------------------------ttgcttct---------aaccata-------tcttgtgtaacgcttgcg------- Spar.....: gacaaataccttctcgccatgtgacagcgaaaaaactttgaaattcgtgcacgaaaatattcaattgtttcttgaccctaaaaccgcactactgatcatgagaaatgcatacaaattcct Smik.....: .................................................................................................tggcttatggttcgcag---cac consensus: * *** ** **** *** **** **** * ** * * * * 1560~1680: Scer.....: -----ttgatatgcaaaaat---------aacgagatggaattt--------------gctg----ccctctttc-------------agccatatgatggc----ggcaaaaactt--- Spar.....: tggacttgagggtcattaatcttacctggagtgagagagaacttctgacttggcccgtgctgataacccgccttccaataaacgagatagctccgcagtagcatgagataagagcttgtg Smik.....: tgcacatgagacgcaatcgtc-------ggctatgagaaagtcacctact--------actgaagtgaaacttat---------acatggttggtagatggttattggtagtagctt--- consensus: *** ** * ** * *** * * * * * * * * *** 1680~1800: Scer.....: --------tgaaatttgtgcacag--gatataataagctacttcttgactctaacgccgtactacagtttaca---------------------aaaaatgtat---------------- Spar.....: atctcgattgaaattcctaaaatgcggtcacagaattctttttcatgtccacagcatggtggagtagttcatactataagaaaattgctaatgaagaagcgtgtcgagaagagcagcata Smik.....: --tttcggtgacattta-gcctcaccactgcaattttggtcctaccataagtattattgtcctgctatgtttaatagacgag------------gaaaacctttaa-------------- consensus: *** *** * * * ** * * ** * * 1800~1920: Scer.....: ---------------acaaactcttaggatt---ggtcaagaaaagtaaatgttgtactgctccaaagatattgcgatgccgtgataattcaaaagggtcgacccagtctatttcactcg Spar.....: gattgggaagccgaaaccaaatctaaatatctaggatcggcaagagtaaatgtcgtactgtttcaaagata---cggtatcgtgacaaattcgatggttcggcacagtgtattgttctcg Smik.....: -----------tgatatgaagtgtgtagcgc-aggagcatcaattgtctgaggcggctgattcccctcaag---cgatgattttgaacatcatacga---agctgatcttactac-ctgg consensus: * ** * * * * ** ** * * * * * ** * * * * * * * * ** * ** * 1920~2040: Scer.....: cgcgataatcgttcgttatccgaa------------------------------------------gctggccaattgatacaa----ttaattgacatcagcagacagcaaatgcactt Spar.....: cgtgatgattgtttgttgtacgaatttgacctttctccgcagagtctggatcacctaacttacaacgccggccaattgatacgacggattaattaacatcaggagacaggaaaagcacta Smik.....: cgtgagaatcggctaacatactgcattggccagttgatggag-----------------ctattatagtggcccattaagaag-----taaattaatatcagaaaa-aggaatagcgcaa consensus: ** ** ** * * * **** *** * * * **** * ***** * * ** ** ** * Scer_spli: DDDDDD Spar_spli: BBBBBBB 2040~2160: Scer.....: gatatacgcagcttaaagcaagggtaaattatctgaaaaaggattgaatacaatcaaaaccttcacatacattggtagtaatatcgagcatcgctattagcagagtatctcgaagtctac Spar.....: gatatacatagcatagagcaaaggtaaattgcttggaaacggattgaatacaatccaaggcttcacgtcgactggtagtattttcgatcgtaggtgttagtaaaatatttcgatgcctgc Smik.....: gatatatacgctataaaacataggtagacggcttgggaaagaagcgggcacaatttaaaacctttagtagactggttgcactcttgaagcaaggtgttagcgacacacttcaacaaatcc consensus: ****** ** * ** **** * ** ** * * * ***** ** * * * * **** * * * * ** * * **** * ** * * * 2160~2280: Scer.....: cacggcgaaagttgattttttatctgaggtgctgatcttcggacgcaatgcgcaaacgtaattccgtagttttcccaattatt-ttattttttaaattacacgtaccaggtagatcac-a Spar.....: cacgg---aatttgagtttt--ttttaggtactagtcatcagacgcaatgc---agcaggctt------tttacgtaattata-aaagcccaaaaattgcgcggattaggagggtcac-a Smik.....: gcctatcagagttgaggcattttttaagatactgggcttc--------------------ctt----------accaatcgtagaaaacctgaaaagttcccggattcagccgatcgcta consensus: * * **** * * * ** * ** * ** ** *** * * *** * * ** * * * ** * * 2280~2400: Scer.....: tacatatacccaacacctgttatatagtgaattgaattattcggaacatcaataatcctttgctta----taattcttgttatcatccatcttgcatcttta-tttaattatattttgca Spar.....: cacgtat-ttcaacactcgttacgtagtgaaccaatttatt-ggaatattaagagctctctgcttaaaaataatcatttttatcacctatcttatatctttaatttaactatattttaca Smik.....: cacttaatactcaaaattgtcttgcaagaggccaattt-taaggagcgttcaatgctccctattta------atagtcgttgacatctatcctgtgctcttgagttgactgt-ttatgca consensus: ** ** * * ** * * ** * *** * * * * *** ** * ** ** * *** * ** ** * * * ** * ** 2400~2520: Scer.....: caataagctatctatgtgagctgcgt--acggt-gactccaaacaatctgttaatttcc-atataaataacttgtagt-cggatcgtacaatggctctatataggttt-ggaccggtatg Spar.....: cattaagctgttcatgtgagctgcgtttacggt-gattttaga-aacccgttaatcat--atctagcgaacttgtagt-ctgactacgcagcagcactctacagctgtagggccgtcata Smik.....: tagcaatagacttatatg-gctacgc--acgtttgattatacatgttccattctttttccttttaaaatacttgtgtttctgaccctgca-cagcttttagtagctatagaaagtcatca consensus: * ** ** ** *** ** *** * ** * * * * ** * * ** ****** * * ** ** ** * ** * * * Scer_spli: DDDDD 2520~2640: Scer.....: taacctaatatggctgactcaaaacctgctagatagttatccaagtgaatttgagtctcgtatcctttatcacatttttacaatagtggctagctatctttttcatgttaggctcacc-- Spar.....: cggtctaagatgagtgacttgaaatctactggtcgattatccgcgtgaacttgagtctcgcatccttcattaattctcaccactaatgattaactccccctttcacatgtggctca---- Smik.....: agagtcaaaaagggcaagttgggatatgcgggtcggttgctcgcccgaattt-----------ccctaacc---tttcgccattaacaattagactcttccttcacataaggcttgatac consensus: ** * * * * * * * * ** * *** ** ** * * * * ** ** ** **** * **** Scer_spli: D 2640~2760: Scer.....: ---cggtattctcatgcaagatcaaacaaaaaatggtaaagttttggactttacattgctt-acagttgcttttttatgaagattcaaaagattatgtcctcggcggctaaattttccat Spar.....: -----atattacc---catgttctcaaagaaatacgttaaatcctggatcttgcattattt-atagttaattttttgtaaatgttcaaaag-ttatgtcctcagcggctaaatcttcc-t Smik.....: tatcaatgtactcgtgaaaattcatgtaaaaa----tcaaatgctggatcttgtgatgttttattgttgatatcttgtataagtttaaaagattttatt-tcggcggctaaatctctaac consensus: * * * * ** * *** * ** * **** ** * ** * *** * * ** * * ** ***** ** * * ** ********** * 2760~2880: Scer.....: taataatattatccttttacgcgaccgaaaaa--gagaagcg-ttttaagagttgtttctaacaaatattaataataaagctaacgtgaactgaccaggctctatttgaaagatATGGCA Spar.....: gaataatattgcccttttacgcgacagaaaaaaagagaagtgattttaaaagctgtctctaacacagattagaggtcggactaacgtaaactgaccagactctacttgacggaaatggca Smik.....: gagtagaatgggccttttacgcgac-gaaaaa--gagaggtggttttaagagctgtttc-agcagagattagaggttgaaattatgtgaacgaatcagaatataattgggagaaatggca consensus: * ** ** ************* ****** **** * * ****** ** *** ** * ** * **** * * * ** *** * *** * ** *** ** ****** Spar_spli: BBBBBBB 2880~3000: Scer.....: CCGAAAAAGAAATCAAACGATAGAGCCATTCAGGCAAAAGGCTCAGAAGGTTAAGTATTTTTTTACATGCTCATCAAATACC------GCCATTACTAACAATTGTACCCCGGGTATTTT Spar.....: ccgaaaaagaaatcaaatgataaagcccttcaggcaaaaggttcagaaggtaaagtattcccttacatgcttatcaccccac------gctattactaacaattgcacctagggtcttta Smik.....: ccgaaaaagaaatcaaatgataaagccgttcaggcaaaaggcgcagaaggtaatgtatatctttctcttctaatcacccccacccccaactattactaacaaatgtatcttcactattta consensus: ***************** **** **** ************* ******** * **** ** * ** **** * *********** ** * * * *** Scer_spli: DDDDDD BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB known....: >====================================================================== 3000~3120: Scer.....: ATCAGCTGAACAATTAATAGAAGATTACTTGGTGTCACAATATAAACCATTTTCTGTAAATGATATAGTTCAGAATTTGCACAATAAAGTGACAAAAACAACAGCAACCAAAGCATTAGA Spar.....: atcagctgaacaattaatagaagactatttggtatcacaatataaaccattttctgtaaatgatataattcagaatctgcataacaaagtgaccaagacaactgcaactaaagcattaga Smik.....: atcagcggaacaattaatagaggactatttggtatcacaatataaaccgttttctgtgaatgatataattcagaatttgcacaataaagtgaccaaaacaactgctaccaaagcattaga consensus: ****** ************** ** ** ***** ************** ******** ********* ******** **** ** ******** ** ***** ** ** *********** known....: ===>= 3120~3240: Scer.....: AAATCTCGTTAACGAGAAACGCATAGTGTCTAAAACCTTCGGAAAGATTATAATTTACTCTTGTAATGAACAAGATACAGCATTACCAAGCAATATTGATCCTTCTCAGTTTGATTTTGA Spar.....: aaatctcgttaacgagaaacgcatagtgtctaagacctttggaaagatcgtaatttactcttgtaatgaacaagaaacagcgttaccaagtaatgtcgactcttctcagtttgattttga Smik.....: aaatctcgttaacgagaaacgcatagtatctaaaacctttggaaaaattgtaatttactcttgtaatgaacaagaaacaggattacccaataatattgattcttctgagtttgattttga consensus: *************************** ***** ***** ***** ** ************************* **** ***** * *** * ** ***** ************* 3240~3360: Scer.....: AACTGTATTGCAACTGAGAAATGATTTAATAGAACTAGAGAGAGATAAATCAACGGCCAAAGACGCTCTTGACTCTGTAACTAAAGAACCTGAAAATGAAGATCTCCTAACAATCATTGA Spar.....: aaccgtactgcaactgagaaatgatttgatagaactggagagggataaatcgATGGCTAAAGATGCTCTTGACTCTGTAGCTAAGGAACCTGAAAATAAAGAACTCTTAACAATCATTGA Smik.....: aaccgtattacaattaagaaatgatttgatagagctagagagggatagatcaATGGCCAAAGACGCTCTTGACGCTGTGATCAAGGAACCTGAGAACGAAGAACTTTTAACAATCATTGA consensus: *** *** * *** * *********** ***** ** ***** **** *** * *** ***** ********* **** ** ******** ** **** ** ************* 3360~3480: Scer.....: AAACGAAGAAAACGAGTTGAAAAAGATTGAATCAAAATTACAAAGTCTACAGGATGATTGGGATCCAGCAAATGATGAGATTGTCAAGCGGATAATGTCTGAAGATACGCTGCTACAAAA Spar.....: AAATGAGGAAAACGAGTTGAAAGAAATAGAGTCAAAATTACAAAGTTTACAGGGCGATTGGAATCCTGCCAATGATGAAATTGTCAAACGGATAATGTCTGAAGATACGCTTTTACAAAA Smik.....: AGGCGAAGAAAAAGAGTTAACAGAAATTGAGTCAAAATTACAAAATTTACAGGAGGATTGGAATCCAGCCAATGACGAAATTGTGAAGCAAATTATGTCCGAAGATACACTCTTACAAAA consensus: * ** ***** ***** * * * ** ** ************* * ****** ****** **** ** ***** ** ***** ** * ** ***** ******** ** ******* 3480~3600: Scer.....: AGAAATCACGAAGAGATCAAAGATTTGCAAAAACCTAATTGCTACAATAAAGGACTCAGTGTGCCCGAAAAATATGAATGAATTTTTGGTATGTATTTTGAACATT-TTTCGAGACCTTT Spar.....: AGAGATCACGAAAAGATCAAAGATTTGCAAAAGCCTAATTGCCACAATAAAGGACTCAGTGTGCCCAAAAAATATGGATGAGTTTTTGGTATGTACCTCGAAAAAGATTTCATTTTTTTT Smik.....: AGAAATCACGAAGAGGTCAAAGATTTGTAAAAACTTGATTGCCACAATAAAGGACTCAGTGTGCCCAAAAAATATGAACGAATTTCTAGTATGTAATCTGAACAGC---AAGAGTTTTTT consensus: *** ******** ** *********** **** * * ***** *********************** ********* * ** *** * ******* *** * *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 3600~3720: Scer.....: TCTTTTGAatatactaacgaaatcttt---acaggaagaaattggatttgaggacatttgatgtgaa-aagcaattggttgttccgtaccggaacacttgctattttact-------tat Spar.....: TCTTTTAAATATACTAACTAAAACTTTCT-ACAGGAGGAAATTGGATTTGAAGTCATTTGATGAGAACAAACGATCGGTTGGTTCATACCGGAGCGCTTGTTTTATTGCTAGTTGGCTAT Smik.....: TTTTGTTATTATACTAACATGAacttttatacaggacgaaattggggttgagcacttctaatgacaa-agacggtcagttggtcatatccagaacacttattttgttgctagttaatttt consensus: * ** * * ********* * **** ****** ******** **** * * * *** ** * * * **** * ** ** * *** * * ** ** * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB DDDDDD 3720~3838: Scer.....: catgattgttt-ttttttcttattctttgctattattatcaaattatatataggtaaataatcttacactagtttataagtgtcacgaacgatgaaatggaaacttgggggggaaggc Spar.....: TATGAtagtccattcttttttattctttgctattattatcaaattaaatataggtatatattctt---ctagtttataagtataatgaacgatgaaacggaccgcc------------ Smik.....: cacaatagtcc--acttttttattcctaaattttattattaatttacatacaggtaaatatatttcttttattttatat-tgttgggaa-gataaagcagaaccttaaattggc.... consensus: * ** ** *** ****** * * ******* ** *** *** ***** *** ** ** ****** * * *** *** ** ** { alias......: ['RPL7A'] chromosome.: 7 description: Ribosomal protein L7A (L6A) (rp11) (YL8) end........: 365994 exons......: [(1, 11), (471, 564), (1033, 1662)] gene.......: RPL7A introns....: [(12, 470), (565, 1032)] length.....: 1662 name.......: YGL076C plength....: 554 start......: 364333 tdist......: 364333 type.......: ORF up.........: 0 } Scer: 6 donors and 3 branches Spar: 6 donors and 4 branches Smik: 5 donors and 6 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 984), ('Spar', 984), ('Smik', 984)] ->[('Scer', 1553), ('Spar', 1553), ('Smik', 1553)] ->[('Scer', 2446), ('Spar', 2446), ('Smik', 2446)] ->[('Scer', 1619), ('Spar', 1619)] ->[('Scer', 2643), ('Spar', 2643)] ->[('Scer', 2776)] ->[('Smik', 1640)] ->[('Smik', 2974)] ->[('Spar', 2943)] ] [ ->[('Scer', 1421), ('Spar', 1421), ('Smik', 1421)] ->[('Scer', 1987), ('Spar', 1987), ('Smik', 1987)] ->[('Scer', 2198), ('Spar', 2198), ('Smik', 2198)] ->[('Smik', 861)] ->[('Smik', 1660)] ->[('Smik', 1997)] ->[('Spar', 3048)] ] 0~120: Scer.....: accttggcctttgcaccgtgccacttcatacacagtgaaaatagtcacgtaaaccgttcatgatatccttcaattcaaaata--attcagcattgatgtgcgtctacgac-aatcgctag Spar.....: -----acccttcgct---tgccacctaatacacagtggatgtagtcacgtaaaccttttacgatatctttcaacataaaatatggttcaccgttgatatgcgtcctcgac-gatcgctag Smik.....: tccttggaatttccaac-aattgggtaatataacatgaa-atagttaaatataactttcatgatagctttgaacataaaata-gctaaatcgttgatatgaatccatgacaaatcgctag consensus: ** * * *** * ** * **** * ** * * ** * **** * ** ** ****** * * * ***** ** ** *** ******** 120~240: Scer.....: tcctaactttattttttttttttttttttacatctgccgtcacccttgcgatgaacgaga-aaaaaac-cgcctttcgaagtataaaaaggatgaactcgatatttcagcaacacatt-c Spar.....: tcctaactttattttttt------------cgtctgccgccaccctcccaatcagcgaga-aaaaaacgcgcctttcgaagtataaaaaggatgaactcaatacttctgcaacacattac Smik.....: tcctaactattttttttt-----------aggtctgccgccgtcat--gaatgaaaaaaatgaaaaactcgcttttcgaagtataaaaaggatgaacagaacaagtttacgacac----- consensus: ******** * ******* ******* * * * ** * * * ****** *** ************************ * * * * **** 240~360: Scer.....: tttaccttggtcttttctcattttgttacaaaaatatatacttataatagcacaggttt-tattattttagatatgcataacacaaaataatgtg-cgtggcagcgttgataataacgag Spar.....: tttactttattctttcctcgttcttatgaaaaatcatatac----agtatcgcaggtttatacta-tctagatatgcatgctac-agacaacgtaccgtagtagcatt-attacagcgag Smik.....: ----tcttgatcttttcttctttccaaatttaaatataatcttaaactag-agaggtgtatggttttataagtattcaaatgataaga-gatatagtgtggcaacataaat-atgacagg consensus: ** ***** ** ** ** *** * * ** **** * * * * ** *** ** * * * * * ** * * * * ** * * * 360~480: Scer.....: ctaatgtcttatatctcatatgagttcatgtgatatttcatgttacagctcagatgcgtaaactctctatccaagatgaggaataggataaag--agatgtatttatttagtgatgatac Spar.....: ctaatgttttatacctcatatgagttcatgtgatattacaagttacagctcagatatgtaaactttcc-tttaagatgagggagtggataagc--agatgtatttatttagtgatgatac Smik.....: tagatgttttatgtctca--tgagttcatgtgatatttcacgttacacctcaaatatgtaaatcttcgatttaagatgaagaagtggataggggaaaatgtgttcatttagtgatgatac consensus: **** **** **** ***************** ** ****** **** ** ***** ** * ******* * * ***** * **** ** *************** 480~600: Scer.....: tgccgattctggcattccaaaaagtgactagc---aaaattgcgatgttgtcaacttaaattacaccatctttcggggctga-tatttaatacatctattttatccattcttctacgtat Spar.....: tgccgattctggcattccaaaaagtgactagc---aaaattgcgatgttgtcaacttaaattacaccatctttcggggctgattattgaatacatcta-cttatccgttcttttacttac Smik.....: tgccgattctggcattccaaaaagtgactagcattataaatgcgatgttgtcaacttaaattacaccatctttcggggctgaatattgaatacaactctttatccttttcttctatctct consensus: ******************************** * ** ****************************************** **** ****** ** * * ***** ** * 600~720: Scer.....: ---tacgtttgtagct-tggccaaaaaaatatcttgcataatttgtact-ccagttcacatc--agt----------tgagtagagaatagctac--------tgatc--atataaacac Spar.....: ---tgcgtgtgtaact-tggctaaaacaatatcttgtataatttgcatt-acagttcaggtcttagtgacgtgagcctgagttgaatctaattacgctagtaaaagtcagatgttaacac Smik.....: atctatctctctatctatctcttgaagctcgactgagctaatatgtctcaataatctttatttaatt------tgaatatattgatgatgaaacctaagaaaatattccgcagtaatgaa consensus: * * * ** ** * * ** ** **** ** * * * * * * * ** * * ** * * * 720~840: Scer.....: ccacacatatctataaatccgtacctttcctatatatatatatatattttttcaaattttgtctgaaattctttctgcaggtttgtcgctgccggac---gcgacttctgagaatcattg Spar.....: ccacacatattaataaatccgtaccttttttagaacta---------tttatcaaaattt-tcagaaactcttcctgaaaatttgtcggtaccggac---gcggcttccaagaattattg Smik.....: acagttactatattacacccatgcatttgtgacatccgtacct---tttcttctaagttaacggtaaaataattcggaaaactcgtcggcatcagacgcagcgactttcgaatatcatca consensus: ** * ** * ** * * *** * * ** ** ** ** *** * * * * * * **** * *** *** *** * ** ** 840~960: Scer.....: ccatctgtatctgtatcactttgacaacttcatcctttctgaaatattgaaataatcaagacactagatctgccttgtattgtcttcggttcatataa-atccaaataaccaaccaagca Spar.....: cca------tctgcatcacttttgcaacttcatccttt-tgaaatattgaaattatcgagatattaaacttatttggtttaatttacgattcatatgatactcagataaacaaccaagc- Smik.....: cca------cctgaatctgtctgctaacatcatcctttttggtatactaagagattcgagctattaaatttatttttcat--ttaacaaatagtgtattatttagacaaacaaccaagca consensus: *** *** *** * * *** ********* ** *** * * * ** ** * ** * * * * * * * * * * * * ** ********* Smik_spli: BBBBBBB 960~1080: Scer.....: aattaagatcacaATGGCCGCTGAGTATGTATACGAAATCGTCTATTTTATTAC--TATTTCCTAAAGTATCCAGAGAAGTATACTAGTTTCCGCAAGTTACGTTGAGAAAAAGGAGCAA Spar.....: aattaagatcacaatggctgctgagtatgtacccgaaaatacgttttttattactatatttcctaaagtatccagaaaagtatactggtttccgcaagttacgttgagaaaaa-gagcat Smik.....: aattaagatcacaatggccgctgagtatgtactttga--tttttgttctactacactatttcgtgatgtatccagagaggtgtactggtttccacaagttacgttgagagaagagaatat consensus: ****************** ************ * * ** ** *** ****** * * ********* * ** **** ****** *************** ** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: >=============================================================================================== 1080~1200: Scer.....: TTCTGCTCTAATAGCATTTGCACTCACACTTACATTTATCTTCAACTTGTGACTATTCACAAGATGATTTTCCGTAGGGGATTACC-TTCACAGGGTCAAAGACAATTTTAGTTGATGAA Spar.....: ttctgctttaaaagcatttgcactcacacttacatttatcttccaattgtgactattcacaagatgaatttccgtaggggattaccttttacaaggtcaaagacaattttagttgataag Smik.....: tcccgcttcaatagcactatcgcacacacttacatttactttcaaattgtgaatattcacgagatgatttttcgtaggggattaccttttactaggtcaaagacaattttagttgacaac consensus: * * *** ** **** * * * ************** *** * ****** ******* ****** *** ************** ** ** ********************** * known....: ======================================================================================================================== 1200~1320: Scer.....: TTTGAGGAAAAA--TTTGAAATATCTTGATTGTTGCCAAAAATTTCATCGC---------CGACCTTGATTAGAATATTTTCTCAAATTTTCATTTCCTAAGTGTCTCTGTTTCACTCCC Spar.....: tttgagaaaagaatctagaaatatcttggttgttgccaaaagtttcaccgctaaatacaacaaatccgattaagatgttttctcaaatcgt-gtttcctaagtgtctctgttttactccc Smik.....: gttgagaaagaa--tcttatatatctcgattgttactataagtttcaccactaaa--caacaattttgatttagacgtttttctcaagttccatcttctaagtgtctctgttttactccc consensus: ***** ** * * ****** * ***** * * ** ***** * * * * **** * **** ** * * **************** ****** known....: ======================================================================================================================== 1320~1440: Scer.....: TTCATTCGAATGAAAAGTGGTGTTTTCAATTCGATGTAACTTCGTAGAAAAAA-GTTTTACTTGATGGTCATACAAACCTAATTCATTCTATTTTCGGTTATGCTAACAAAAATATTTTA Spar.....: ttcattcgaatgaaaagtggtgttttcaattcgatgtaacttcgtagaaaaaa-gtattgcttgatggttacATGAACCTAATTTATTATATGTTCGGTTATGCTAACAGAAAAA-TCTA Smik.....: ttcattcgaatgaaaagtggtgttttcaattcgatgtaactttgtagaaaaagtatactacttgatgcttacgtgaatttactttaatatatgttctatcatgctaacaaaag---ttca consensus: ****************************************** ********* * * ******* * * ** ** ** * * *** *** * ********* ** * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 1440~1560: Scer.....: TTATTTG-TATTATTACAGAAAAATCTTGACCCCAGAATCTCAGTTGAAGAAGTCTAAGGCTCAACAAAAGACTGCTGAACAAGTCGCTGCTGAAAGAGCTGCTCGTAAGGCTGTATGTT Spar.....: TTATTTG----TATTACAGAAAAATCTTGACCCCAGAATCTCAGTTGAAGAAGTCTAAGGCTCAACAAAAGACTGCTGAACAAGTCGCTGCTGAAAGAGCTGCTCGTAAGGCCGTATGTT Smik.....: tcgtttaattttattacagaaaaatcttgaccccagaatctcaattgaagaagtctaaggctcaacaaaagactgctgaacaagttgctgctgaaagagctgctcgtaaagccgtatgtt consensus: * *** ******************************** ***************************************** *********************** ** ******* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: =================>= >====== 1560~1680: Scer.....: AAACTTTTGCTTACATTTATATTTTATGCTGCAACACAT--TTTCTTACTGGGATATATGTGAGTTCACGTGC----GTCGCCAATTTTGATAAGTATCATTCGAACAGTTGCAATATTC Spar.....: AAaactttgcttacatttatattttatgccgcaacacattgtgttttactaaaatgaatgtgagttcacgtgcatttattgtcaatttcgataa----tattcgaacagttgcaatgttc Smik.....: aaaactttattagaatttgtgttttatgctgctataaaat-aactttattgaaattaatgtttacccacatgcattgtttgtcagtttc-atggttaatatgctaacaatcgcaatgtct consensus: *** *** * **** * ******** ** * * * *** * ** **** *** *** * * ** *** ** ** * **** * ***** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD BBBBBBB known....: ======================================================================================================================== 1680~1800: Scer.....: T-CAACACCTGTGGTATCATTAGGCTAATGGACTA-TTTGTTACGTTCTGTTTGTTTTCTCATTTTATGATGAAAATCCATTGTATCCCAATACATATTCGACTAGTCATTGACGATGCT Spar.....: tccaatacctgtggtatcatcaagctaccgggctgtttttttacgttctatttgttttctcattttatgatgaaaagccattgtatcccaatacatattcgactagtcactgacgatgct Smik.....: t-ccctaccaatggta---ttcaattattgcgcta-tttgct-cttactgtttattttctcattttatgatgaaaatcctttgtatcccaatacatgttcgactagtcattgacgatgct consensus: * * *** ***** * ** * ** *** * * * ** *** ********************** ** **************** ************ ********** known....: ======================================================================================================================== 1800~1920: Scer.....: GTCGTAACTTATCACCATCTTTCGACTGATTATAAGAAAA-GAAATAGAAAGTAAAATAGACCAGAGAGTTAAGGTATTAAGGTTACAATTATTGCCGTGTTTCCAGTGTCAGAAAAACC Spar.....: gtcgtaacttatcaccatctttcgactgattattagaaaaggaaatagaaagtaaaatagact-gttagttgtggtactaaggttagaaacattgctgcgtttgccgtggccgacatgtc Smik.....: gtcgtaacttatcaccatctttcgactgataatgagaaaa--aaatagagagtaaaaaagggc-gatatttgtggtactggatttgaggatattgctatgattgacgtagctgacatgtc consensus: ****************************** ** ****** ******* ******* ** * * ** **** * ** ***** * ** ** * ** * * known....: ======================================================================================================================== 1920~2040: Scer.....: ATTG-AGTGATAATGCCGTGTAACAATTTTTAGCATAAAATACTGTGTTTTCCATCTGGTATTTTTTTACTAACATCAATTTACTGTTTTTTACTTTTTATTTTCATTTAGGCTAACAAG Spar.....: attgaagtaataaagcagtgtagcaa-ctttggcataaaatac--tgtttttcacttgacatttttttactaacatcaatttactgttgtttacttttgtttttcgtttaggctaacaag Smik.....: attgaggtaataATGCTGT----TGATTATCTGCATAAAACAA--CGTTTTTTATTTCGTATCATTATACTAACATCAATTAACTGCTTCATTTTTTACTTTTTTATTCAGGCCAACAAG consensus: **** ** **** ** ** * * ******** * ***** * * ** ** ************** **** * * *** **** ** **** ****** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB BBBBBBB known....: =============================================================================================================>= 2040~2160: Scer.....: GAAAAGAGAGCCATTATTTTGGAAAGAAACGCCGCTTACCAAAAGGAATACGAAACTGCTGAAAGAAACATCATTCAAGCTAAGCGTGATGCCAAGGCTGCTGGTTCCTACTACGTCGAA Spar.....: gaaaagagagctatcattttggaaagaaacgccgcttaccaaaaggaatacgaaaccgctgaaagaaacatcatccaagccaagcgtgatgccaaggctgctggttcctactacgtcgaa Smik.....: GAAAAAAGAGCTATCATTTTGGAAAGAAACGCTGCTTACCAAAAGGAATACGAAACTGCTGAAAGAGACATCATCCAAGCCAAACGTGATGCAAAGGCTGCTGGTTCCTACTACGTCGAA consensus: ***** ***** ** ***************** *********************** ********* ******* ***** ** ******** *************************** 2160~2280: Scer.....: GCTCAACACAAGTTGGTCTTCGTTGTCAGAATCAAGGGTATTAACAAGATCCCACCTAAGCCAAGAAAGGTTCTACAATTGCTAAGATTGACAAGAATCAACTCTGGTACATTCGTCAAA Spar.....: gctcaacacaagttggtctttgttgttagaatcaagggtattaacaagatcccacctaaaccaagaaaggttttacaattgctaagattgaccagaatcaactccggtaccttcgtcaag Smik.....: GCTCAACACAAGTTGGTCTTTGTTGTCAGAATCAAGGGTATTAACAAGATCCCACCTAAGCCAAGAAAGGTCCTACAATTGCTAAGATTGACCAGAATCAACTCTGGTACTTTCGTCAAA consensus: ******************** ***** ******************************** *********** ******************* *********** ***** ******** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 2280~2400: Scer.....: GTTACCAAGGCTACTTTGGAACTATTGAAGTTGATTGAACCATACGTTGCTTACGGTTACCCATCGTACTCTACTATTAGACAATTGGTCTACAAGAGAGGTTTCGGTAAGATCAACAAG Spar.....: gtcactaaggctactttggaactattgaagttgattgagccatacgttgcttacggttacccatcatactctactatcagacaattagtttacaagagaggtttcggtaagatcaacaag Smik.....: GTTACCAAGGCTACTTTGGAATTGTTGAAATTGATCGAGCCATACGTTGCCTACGGTTACCCATCCTACTCTACTATCAGACAATTGGTCTACAAGAGAGGTTTCGGTAAGATCAACAAG consensus: ** ** *************** * ***** ***** ** *********** ************** *********** ******** ** ****************************** 2400~2520: Scer.....: CAAAGAGTTCCATTGTCCGACAATGCTATCATCGAAGCCAACTTGGGTAAGTATGGTATCTTGTCCATTGACGATTTGATTCACGAAATCATCACTGTTGGTCCACACTTCAAGCAAGCT Spar.....: caaagaattcctttgtccgacaacgctatcatcgaagccaacttgggtaagtacggtatcttgtccattgacgatttgatccatgaaatcatcactgtcggtccacacttcaagcaagct Smik.....: CAAAGAGTTCCATTGTCCGACAACGCTATCATCGAAGCTAACTTGGGTAAGTACGGTATCTTGTCCATTGACGATTTAATTCATGAAATCATCACTGTTGGTCCACACTTCAAGCAAGCT consensus: ****** **** *********** ************** ************** *********************** ** ** ************** ********************* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2520~2640: Scer.....: AACAACTTTTTGTGGCCATTCAAGTTGTCCAACCCATCTGGTGGTTGGGGTGTCCCAAGAAAGTTCAAGCACTTTATCCAAGGTGGTTCTTTCGGTAACCGTGAAGAATTCATCAACAAA Spar.....: aacaacttcttgtggccattcaagttgtccaacccatctggtggttggggtgtcccaagaaagttcaagcactttatccaaggtggttctttcggtaaccgtgaagaattcatcaacaag Smik.....: AACAACTTCTTGTGGCCATTCAAGTTGTCTAACCCATCTGGTGGTTGGGGTGTCCCAAGAAAGTTCAAGCACTTTATCCAAGGTGGTTCTTTCGGTAACCGTGAAGAATTCATCAACAAA consensus: ******** ******************** ***************************************************************************************** 2640~2760: Scer.....: TTGGTTAAGTCCATGAACTAAactggttg-aagtcacatt---acatataac--tacttattttatcta-agtcctatatagttctgttattcactag-tttgtatattgtacctct-aa Spar.....: ttggttaagtccatgaactaaactggttgaaagacgtatttcatcatataactatacctattttatctatagttttatatagctccgttattcactagttttgtatattgtacctctaaa Smik.....: TTGATCAAGTCCATGAACTAAgctagttgaaagacgtgtaccatcatataactaagctcattctatctatagttttatgtagttctgttattcactag-tttgtatattgtacctttata consensus: *** * *************** ** **** *** * * ******** * *** ****** *** *** *** ** ************ **************** * * Scer_spli: DDDDDD Spar_spli: DDDDDD 2760~2880: Scer.....: tttatcttataatttcgtcagtaatgacttataattggctttattttctt-ctcttttttttcacatgcgcagaacctatataacgaaaaaaaaaaaaatgaaaactgaagataagcggc Spar.....: ttaatctaggattttcgtcaataatgacttataattggcttcgttttcttccttttttttttcacatgcgcataacctgtataacgaaaaaaaa---------acctgaagataagcagt Smik.....: ttaatacggga-tttcgtcactaatgaccaaggattggatttgtttt-------actttcttcacatgcgcagagcctatataacgaaaaaaaa-----------ccgaagataagcagt consensus: ** ** * ******** ******* * ***** ** **** *** ************ * *** *************** * ********** * Scer_spli: DDDDDD 2880~3000: Scer.....: cttgacttctctaaactgccgatatttcaacgaaagttagccaacttatttataaa-agccttgaataccaacaattggaaagaaggtgtctgtgcttatcatatatagcttgcataaa- Spar.....: cgtgacttctttggtctgccgatatttcaacggacgttaaccaaatgatttataac-agcattgtatgccaacaattagaaagaaggtatctgtgcttgtcatatataacttgcataaag Smik.....: cgtgacttctctgggctgccgata---caacgggcgttaaataatgtattcagaaacagccctgtatatc------tataaagaaggtatctgtgcatgtgatatataacttgtaaaa-- consensus: * ******** * ********* ***** **** ** *** * ** *** ** ** * * ********* ******* * * ******* **** * ** Spar_spli: DDDDDD Smik_spli: DDDDDD 3000~3092: Scer.....: gaaaaattataatatcttcgaacttccatagaaagaatatct-ttcagtgttaactggctcatttactcagaaattagtattttgaagaacg Spar.....: gaaaaattatattatcttccaactttcaaag-aggaatatctattcagtactaactcgctcacttactcagaaactgatattttgaagaacg Smik.....: -aaaaattgt--tatcttaaaactatcaa---tagaatatat-ttctgtgttaacgggctgacttactcaaagatcgacatctcgaagaacg consensus: ******* * ****** **** ** ****** * *** ** **** *** * ******* * * ** * ******** Spar_spli: BBBBBBB { alias......: ['MMS2'] chromosome.: 7 description: Similar to ubiquitin conjugating protein family end........: 346902 exons......: [(1, 11), (97, 499)] gene.......: MMS2 introns....: [(12, 96)] length.....: 499 name.......: YGL087C plength....: 166 start......: 346404 tdist......: 346404 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 3 donors and 3 branches Smik: 4 donors and 2 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 355), ('Spar', 355), ('Smik', 355), ('Sbay', 355)] ->[('Scer', 1703), ('Spar', 1703), ('Smik', 1703), ('Sbay', 1703)] ->[('Scer', 1271), ('Spar', 1271), ('Sbay', 1271)] ->[('Sbay', 1362)] ->[('Sbay', 2108)] ->[('Scer', 963)] ->[('Smik', 13)] ->[('Smik', 1621)] ] [ ->[('Scer', 397), ('Spar', 397), ('Smik', 397), ('Sbay', 397)] ->[('Scer', 1770)] ->[('Smik', 1022)] ->[('Spar', 1653)] ->[('Spar', 2178)] ] 0~120: Scer.....: ----------------------------------------------------------------------------------------------------------------------ta Spar.....: tctgtacccgatagaatagaccttcagccccgaactctccaatgaactacctacctgatatatataggttaccgatcaatgcagtgaagaaagtttgtaatgccgctattacctctatta Smik.....: tctgtttccaatcgtatgaagatttgatct--aagcttttgaataattgcgtacttcagatttgtggactgctaattta-gtgtgatcaaaaatattcaatgccgctagtacagctagta Sbay.....: tttgtcaccgatagaataaaccttgagtaccaatttgtcctatatattgcgtatctaatacacaagaatcaccaattgaagcattaggaaagctattcaatgccgctattgcctctatta consensus: ** Smik_spli: DDDDDD 120~240: Scer.....: tttactattacctctcga-ttttaagatggaaaaaattgttaggaattattcctagggtaacacgctatcaattttcattgctcctttagcgat-aaataagagactaa-----aataag Spar.....: tttactgttacttctcaa--tttaagattg-aaaaattgtcagcaagtattcctagggtaacgcgatagcgtttcttagcgctcctttagtgataaaacaagatactaa-----aatgag Smik.....: tttactgttattgttcaa--attaatattg-aaaaattgtaagaaagaattcctagggtaacgcactagcagttctcaaaactcctttaggaataaa----gatactaa-----aataag Sbay.....: tttactgttattgttaggtcaagaagattgaaaaattcttgaagacggccccttagggtaacgagccagcgtttttcactactccttcagcaataaaacgaaggataaataaagaatgag consensus: ****** *** * ** ** * **** * * * * * ********* * * ** * * ****** ** ** ** * ** *** ** 240~360: total....: ===== Scer.....: atcaacttcctacacaa-tctctgctcattacatttcgat-gtcgtg-gtgaaattcttatt-ctgtatatgcaacgtagaagaaagcagcgtttacac-aaaaATGTCAAAAGTGTATG Spar.....: atcatcttcatacaaaa-tttctactgattgtatttcgatcattgta-ttgaagttctcgttattgtacatgcaatataggagaaaagatcgtttatccaaaaaatgtcaaaagtgtatg Smik.....: atcaacttcataca-aa-tgccaactgattacactt-aatcttttta-acaaaactattgatattgtgcatggaaagtagagaaaagcagtgtatacac-gaaaatgtcaaaagtgtatg Sbay.....: atcagcttccaataaaagaaccaatcaattacatc--gaccattggaggtgaaggtatttttatagtacatcaaacgtccggagaagcaatttttacag-aaaaatgtcaaaagtgtatg consensus: **** **** * * ** * *** * * * ** * * * ** ** ** * ** * * ** ******************* Scer_spli: DDDDD Spar_spli: DDDDD Smik_spli: DDDDD Sbay_spli: DDDDD known....: >==== 360~480: total....: = ======= Scer.....: TTATTATAAGTTT----TGAAAGGGA-TTTCAACATATACTAACAAATTCTTGAAATGTACC-CTCACTGTCCTATTGTAAATCAGACCAAGAAATTTTAGGTTGTTAGAAGAATTAGAA Spar.....: ttattctgaattt----tgaaaggggttttcaacatatactaacaaatctttgatatg---------------tattgtaaatcagaccaagaaattttagattattagaagagttagaa Smik.....: ttattatatattt----tgaaagaga-tgccagcatatactaacaaatcaacgctcaccac----------cgaattgtaaacaagaccaaggaattttaggttgttagaagaactggaa Sbay.....: ttgttatgattttcatgcgaaaagggagttgaacatgtactaacaatttgatgaaatgtatcattcgatgttctattgcgaaccagaccaagaaatttcaggttgttagaagaactagag consensus: ** ** * *** **** * * *** ********* * * **** ** ******** ***** ** ** ******** * ** Scer_spli: D BBBBBBB Spar_spli: D BBBBBBB Smik_spli: D BBBBBBB Sbay_spli: D BBBBBBB known....: ====================================================================================>= 480~600: Scer.....: AAGGGTGAAAAAGGGTTTGGTCCAGAATCATGTAGTTATGGTTTAGCTGATAGCGACGATATTACCATGACCAAATGGAACGGCACTATTTTAGGGCCCCCTCATAGTAATCATGAAAAC Spar.....: aagggtgaaaaagggtttggcccagaatcatgtagttacggtctagccgatagtgacgatattactATGACTAAATGGAACGGTACTATTCTAGGGCCCCCTCATAGTAACCATGAGAAT Smik.....: aagggtgaaaaggggtttggcccagaatcatgcagttacggtcttgctgatagtgacgatattaccATGACTAAATGGAACGGTACCATTTTAGGACCCCCTCACAGCAATCATGAGAAC Sbay.....: aaaggtgaaaaggggtttggcccggaatcctgtagttacggtctggccgatagcgacgatattaccATGACTAAATGGAACGGTACCATTTTAGGCCCGCCTCACAGTAATCATGAAAAC consensus: ** ******** ******** ** ***** ** ***** *** * ** ***** *********** ***** *********** ** *** **** ** ***** ** ** ***** ** 600~720: Scer.....: AGAATCTATTCCCTTTCTATAGATTGTGGCCCAAACTATCCAGATTCTCCCCCAAAGGTCACTTTCATTTCCAAGATAAATCTACCATGCGTCAATCCAACTACGGGGGAGGTCCAAACT Spar.....: AGAATCTATTCCCTTTCTATAGAATGTGGCCCAGATTATCCGGATTCCCCACCAAAGGTTACCTTTATTTCCAAGATAAACCTACCATGCGTCAATCCAAGTACTGGGGAAGTCCAAACA Smik.....: AGAATCTATTCTCTATCTATAGAATGCGGCCCAAATTATCCAGATTCCCCACCGAAAGTTACATTCATTTCCAAGATAAACCTGCCATGTGTCAATCCAACTACAGGAGAGGTCCAAACA Sbay.....: AGGATCTATTCCCTTTCCATAGAGTGTGGCCCAAACTATCCAGATTCTCCACCAAAGGTTACATTCATTTCCAAGATAAATCTGCCATGTGTGAACCAAACTACGGGCGAGATTCAAACG consensus: ** ******** ** ** ***** ** ****** * ***** ***** ** ** ** ** ** ** ************** ** ***** ** ** * ** *** ** ** * ***** 720~840: Scer.....: GACTTCCACACCTTACGTGACTGGAAAAGAGCCTACACCATGGAAACTTTATTACTTGATCTTAGAAAGGAAATGGCAACCCCAGCGAACAAGAAATTGCGTCAACCGAAGGAAGGAGAA Spar.....: GATTTCCACACATTGCGTGACTGGAAAAGAGCCTACACCATGGAAACTTTATTACTAGATCTTAGAAAGGAAATGGCAACTCCAGCGAACAAGAAATTGCGCCAACCACAGGAAGGTGAA Smik.....: GATTTCCATACATTGCGTGGCTGGAAAAGAGCCTACACCATGGAAACCCTATTACTAGATCTTAGAAAGGAAATGGCAACCCCAGCTAATAAGAAATTGCGCCAACCAAAGGAAGGTGAA Sbay.....: GACTTCCACACTCTGCGTGACTGGAAAAGGGCCTACACTATGGAAACCCTATTACTAGATCTTAGAAAGGAAATGGCAACTCCAGCTAATAAGAAATTGCGCCAACCAAAAGAAGGTGAA consensus: ** ***** ** * **** ********* ******** ******** ******* *********************** ***** ** *********** ***** * ***** *** 840~960: Scer.....: ACCTTT----------------TAGttatctactttttcctaaacagtatttgcagcattcc-------aagccactcatatatacaagcaataag--acatagatatcctcttatttag Spar.....: ACCTTT----------------TAGctacacattcctcctt--acaatatttgcagcatttcctcac-ggtcacactcatatatacaagcaataaaacacatagatatatttttatttac Smik.....: ACCTTT----------------TAAtcatttatttgcctccaaacaatactcgcagcatttttcctcaagtcccactcatatatacaagcagtaaaacattcggatatatttctatttag Sbay.....: ACCTTTTAAccgtcaaaccttctaattgtcttccgccccctaaagaagacttgcagcattccc------ctctcacttctatatacaagcagcacaacacatacatatatctatatctag consensus: ****** ** * * * * ******** **** ************ * * **** *** ** 960~1080: Scer.....: gtagtaagtttaattactttcataatatgaatttactcaccccatgccgagaa--gttactcgtgcaattcactacgataatgat-------gtatatagttgtattatcaatccttgca Spar.....: gcgacaagtttaggtg-tttcataacatgcaatcactctccccatgttgagaa--gctact-atgcaattggctacggtaa------------tatatagctgtattatcaatccttgca Smik.....: ataacaagcttaattgtttttataacaagcaactgctttatccatattgggagttactacgcaactaactgactacgatgattat-------gtatataaatgtattatcaatccttgca Sbay.....: atataaagactgattgttttc-taatgt---actacgcatcccaagctaaaaattactcctcaagaggctactaagagtgtatataatgttgatatatagatgtcgtatcaatccttgca consensus: *** * * *** *** * *** * * * * * * ****** *** ************** Scer_spli: DDDDDD Smik_spli: BBBBBBB 1080~1200: Scer.....: acggtcctcatccgggcacacgaaggtaaacccttagatctgcta-aaaaacagacgacagaaagactgttgcacccaagatcgataaatttgttctccagtccaagccaataataaata Spar.....: acggtcctcatccgggcacacgaaggtaaacccttagatctgct--aaaaacagacgacagaaagactgttgcacccaagatcgataaatttgttctccagtccaagccaataataaata Smik.....: acggtcctcatccgggcacacgaaggtaaacccttagatctgcta-taaagcagacgacagaaggactgttgcacccaagatcgataaatttgttctccggtccaagctaataataaata Sbay.....: acggtcctcatccgggcacacgaaggtaaacccttagatctgctataaaaacagacgacagaaagattgttgcacccaagatcgataactttgttctccagtccaagccagtagtaaata consensus: ******************************************** *** ************ ** ********************* ********** ******** * ** ****** 1200~1320: Scer.....: tattgcaacaccaatccacattcttcatgggtcaagaacgccccggaggggttcaacctcgacgagatactgtacgtgttacgaatggctgttaaatttgcgttactgttataaaataac Spar.....: tactgcaacacaaatccacattcttcatgggtcaagaacgccccggagggattcaacctcgatgagatactgtatgtgttgcgaatggctgttaaatttgcgttattgttataaaataaa Smik.....: tattacaacacaaatccacattcttcatgggtcaagaacgccccggaggggttcaacctcgatgagatactgtatatgttgcgaatggccgttaaatttgcgttactgttataaaaaacc Sbay.....: tactgcaacacaaatccacattcttcatgggtcaagaacgccccggaggggttcaacctcgatgagatactgtacgtgctgcgaatggctgttaaatttgcgttactgttataaact--- consensus: ** * ****** ************************************** *********** *********** ** * ******** *************** ********* Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: actaaaat--------aagaaatggaaagtaaataaatagtaaaggaaagtcaaataaagcaatgaatgctgcattgatctgccttttatagctaagaaaaaaaaagagaaaaaaataat Spar.....: tttaaaataaatttaaaagaagaaacagatgattaaaaagtagaagagatggaaataaagcaaataatgctgctttgatctgtcttttatagctgaaaaactaaaaaa-aaaaaaatgca Smik.....: actaaaa---------aagatatag-aaatatttggcaaaatatacataagttagtgaaataattgatgatgcttcatcctattatttatagctgaagaactgaaaaaaaaaaaaaagtt Sbay.....: ----------------aagtattacataaaaattaaacagaagtaagtatagaaa-agagcaacctactcaatttcgaactgccttatatagttcagaaagagaaaaaaaaagcggcgaa consensus: *** * * * * * ** * * ** * ***** * * ** *** * *** Sbay_spli: DDDDDD 1440~1560: Scer.....: aagtg-------------cgggtaacctcatgcattgtaaaacggtagggctacaaggcactacttactctacgctatagaagaagcttcaagacatggtgttgttcttatttgagcgaa Spar.....: aaaaa-------------cgggtaacttaat-tatttcaagacagtagggctacgagatgctac-tactctacgccagagacgaagc-----------------tcattatttgagggaa Smik.....: aaaaagta-----aaacccgggtaacacctcatattggaagagagtagggctacaagatgctttct-cttaacaacattaacgagaa-ccaaggcgaagtgctcttactgtccgaggaaa Sbay.....: aaaaaacaacaatagatacgggtaacagctt-tataggtgaac--tagggctgcacgatgcctc-tggtatatggtgttgaggaagaacaatagagtgagcctcttccttgtcgagaggg consensus: ** ******** ** * ******* * * * * * * * ** * * *** 1560~1680: Scer.....: ctcagctgtcacc-g-tttcgggaaactctatagttttctgcgttt-cagtacgcagttgggcgtgctaaagttg-ttttcctaatttgctagtgttcacttgctcattgatgtccctaa Spar.....: --cagctgccacctg-tttcgggagcatttgtgtttgtctgcgtct-cagtacactcgactgcgtatttaatctgtttttcctgatttgttaatgctaacattcccattgatgtccagaa Smik.....: tt---ctgtcatatgttttcaaaagtatttcta--ttccagcatctgctatgcaatcaactgcatgtttgatcaatttttcctaattggtcaatgctcacttaaccattgatgtccaaaa Sbay.....: --aggttacgaccagctactagaaagttttgcgccggcgcgtat---tcttccgtttggctacatggctatcttgttttgc-------gctgatgtttacttgctcattaatgcctaaaa consensus: * * * * * * * * * * * * * *** * * ** * ** * **** *** * ** Spar_spli: BBBBBBB Smik_spli: DDDDDD 1680~1800: total....: ====== Scer.....: aaggtaatgtcgcatagtaagatgtatgtcccatatcaaacgc-attcctagaaaaacatgcactgaatgaataagcagtta-cttcgattactaa-------tcttcacagcataa--- Spar.....: taggtaatgacatttagtaggatgtatgtctcacatcagatacttttcctagaaaaacgtgtgctgagcgaataagcgatta-gtttgcttagtta-------ttctcatggactgg--- Smik.....: taggtaataccacttagttaactgtatgttccacaggaca-gttttttctgg--aaacgtttcctgagacaatgaacaacca-gtttagttgttag-------cgttagcagattgg--- Sbay.....: tgggtaatgtcgcttaatgggtggcatgtcccacagtaggaa--taggctgg-atgacgtgtcatgaaacaggcagcagttaggttaggttggttgccacagctttttccaaactctgca consensus: ****** * ** * * **** ** * * ** * ** * *** * * * * ** ** * * * Scer_spli: DDDDDD BBBBBBBBBBBBBB Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1800~1920: Scer.....: ----tttttctcttatcttgtaaacctctttctatcttttcataaagtttgtcacttatatttcttcattggtacatcaatgcc-agcaacgatgtgcg-catc--tgggcgacgcctgt Spar.....: ------ttactcttat-ttacctccctctttctatctcctcataaaatctaccgcttacgtttcctaattgatatatcaataccaagggacggtaaacgacatt--taaacaatatcttc Smik.....: ------taactcttgtcttgcctccctctttttacctcctcttcacctttgtcgcctacatttcctaatcgatacatcaatactaagaaacgatatgtaacatttatgagcaaactcttc Sbay.....: tttcaattatccttttcttgccaccccttttctgtttcctcgacagatttactgtcgcaatttcctaatcggtacatcaatgcc-aaatgcactgcacgatgtt--tgatcaaaagtttc consensus: * *** * ** ** *** * * ** * * * **** * ** * ** ****** * * * * * * * * * 1920~2040: Scer.....: agtgattgttttcaaggtatcgagccaaactattca-tcgttactgtttcaaatattcagttgtttcagtac----agagtcgccgtggacctagtgaaacttggtgt-ctttacagcgc Spar.....: aacggttgctttcaaagtatcgagcaaaactgttta-tcgttactgtttcaga-atttagttgtttcatcgt----aaatcccccctgaacttggtcaaacttgatgtgttttacaacat Smik.....: aatgctc-ttctcaaggtgccataacaacgtgtttattttttgctgtttcaga-tttttgctgtttcaaaa-----acagttatctttaacttgatgaaactttatgcattttgtaacat Sbay.....: gaaggtgcccatcgaggtaccaagtcacctgtttctttcattgttgtttcaga-acgcagatgttttcatacagggagggcccttctcaacctagtccagcttggtatattttgcaatat consensus: * * ** * ** * * ** * ** ******* * * ***** * * ** * * * *** * *** * 2040~2160: Scer.....: agagacgagg-gcttatatgtataaaagctgtccttgattctggtgtagtttgaggtgtccttcctatatctgt-ttttatattctatataatgg-ataattactaccatcacctgcatc Spar.....: agaaacgaggcgttttcacatataaaagctgtcctaagttctcttgtagtctgatataacattcttatatccgt-ccatatatcctatacaacgg-aaaattaccaccatcactttaaag Smik.....: aaagacgaagcactgtcgcctataaaaactgttcttagttctgttgtagattaatacg---tcccagtatacgc-tcttatatcctacattatcg-aaaaataaaaccaacattagagtc Sbay.....: gtagaccgaaccacttcacatataaaaatagtctgctattcttgtgtgatctaacgatgcttcctctagtatgtactttagatcatatatagaagtaaaactaccaccagcactcgtaac consensus: * ** ******* ** **** *** * * * * * * ** ** ** * * * ** ** **** ** Sbay_spli: DDDDDD 2160~2193: Scer.....: aaattccagtaaatt---cacatattggagaaa Spar.....: cattttcagtacattaaatattaactgaagaaa Smik.....: catttttgttacaccaaatattagctaaata-- Sbay.....: tactttcaatacattcagtgtcaatagaagaa- consensus: * ** ** * * * Spar_spli: BBBBBBB { alias......: ['RPL28', 'CYH2'] chromosome.: 7 description: Ribosomal protein L28 (L29) (rp44) (YL24) end........: 311925 exons......: [(1, 49), (561, 961)] gene.......: RPL28 introns....: [(50, 560)] length.....: 961 name.......: YGL103W plength....: 320 start......: 310965 tdist......: 310965 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 5 donors and 2 branches Smik: 2 donors and 3 branches Sbay: 3 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 864), ('Spar', 864), ('Smik', 864), ('Sbay', 864)] ->[('Scer', 1529), ('Spar', 1529), ('Smik', 1529), ('Sbay', 1529)] ->[('Sbay', 1114)] ->[('Scer', 144)] ->[('Spar', 274)] ->[('Spar', 311)] ->[('Spar', 1237)] ] [ ->[('Scer', 1355), ('Spar', 1355), ('Smik', 1355), ('Sbay', 1355)] ->[('Scer', 1485), ('Spar', 1485), ('Smik', 1485), ('Sbay', 1485)] ->[('Scer', 124), ('Smik', 124), ('Sbay', 124)] ] 0~120: Scer.....: actatgctacgtacctgtttaactc-ttctcattttatccgttttctttcttcaccgttcctcttaagttctttatttttttcataacagaatgatcacccctttcactttgccgccaat Spar.....: actgcgctatgtgcctgcctaactt-ttctcatatcattcgtcttcttttctcacaatttctctttcactttcatttttcttaacaggaggatgatcacccctttcactttgccgccaat Smik.....: attgcgctgtgtacctgcttacctccttctaatttaactttctctatctcaaaattattcacctttcaatttcacttttttgtaaagaagaaa---cccccctttcatgttgccgccaat Sbay.....: cctggcctgtattcttgccaaactc---cttgtaggattagtcttccgtctccattgttc----ttcacttctaatcactttttcagaaaagttgtccccctttttattttgccgccaag consensus: * ** * * ** * ** ** * * * * * ** * * * * * * * *** *** * ********** 120~240: Scer.....: ataatattaacacacaagaaataagtatgaggtagtttgctctcgaaaaaaccaagtaatagttcaaaaaatgaaaaaaagaaaacaaataccaaattatgccaccgttaccttacgttt Spar.....: ataatatcaacaca--agaataaggcatgaggtagttc---ttcgaaaaaa--gagtaaaactaccaaaaa---------------aaaagtcaaaaggttctctcgctaccctttttct Smik.....: agcatattaacata--aaagagaagaataaa-cagttc---ctcaaaaagag-gatagaaaacaccaaaaat-----------------agcaaaatcgcttgcactttggttttcttct Sbay.....: aagatactaacaaa--ggaaaaagagatggcaaagttc---cttaaacagac---gtgcaagcacacaag---------------------------------caagttgtcctcaaaat consensus: * *** **** * * * ** **** * ** * * * * ** * * * Scer_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 240~360: Scer.....: catggttaatcatcgtttactgccgcctatgagcgtaag-ctaatgttataaagaaacaagctataatattgt-taaatatagttgatcaacagcattgtaatgattacaagagacgagg Spar.....: cataattaattagcttttactatcacttataggcgtaag-ttaatgttacaaggaattaaactatgataatgtatgaacgtagttggttaacagtataataatagtta-acaagacgaga Smik.....: cgtgatgaacaaatgcttgccctttccgatactctcaaggttaacgttacaaataaatgaactacactaatga-ttaacacagttgttgagtgatacaacaacgaaaaagcaaggccaaa Sbay.....: ggtggctaa--gacgctgccaatgacagctgggcatgga-ctaatatc-caagtatattaagtatattac-------gtgtcattgttt------------------------------- consensus: * ** * * * * * *** * ** * * ** ** *** * Spar_spli: DDDDDDD DDDDDD 360~480: Scer.....: tggaatgaaccttatgaaatgcgtattatatataaactgtaataagagctaagttgaattgaaatcta-cgatacttga--tgttgacattatagcactagttcccaggaaaccc----- Spar.....: ttgaatgaaaactatgatgtgcgt---------------taacaggagttgattccaactggcattta-tgacatctga--catcggcaatatatcagaggtccccaagaggccc----- Smik.....: ctaaattgaaacgatagtgtgtatctttcacacagacaatagtaaaatccagtcccaatcagtctttaatgtcaacaaaaccgttcgaagcacatcaatagtgtcggtaaggcttcaaga Sbay.....: --------------tgacctgc-----------------------------------------ttcca-------taaacctgtattaatcatatcaactgt-------aggatc----- consensus: * ** * * * * * * * ** ** * 480~600: Scer.....: ---tttcgaaaaacacagcaaaaacaagagtactgtaaccaatgtaacatctgtacaccaggg----acccacacat-taccaaaatcaaaattatttttctaatgcctgttatttttcc Spar.....: ---tccttgcaaaaaccgagcaaaacaaagtactaccactcattaacaatcagtacaccatga----acccaaacat-tacctaagaaaaaactatttct-taagggcagttatttctcc Smik.....: gcattcttacaaaaactcagtaaaaagatgtactattaccaattgtacacctgtacatctaggcactatcaaaacccataccttcaaaagcctaagtaattttattgtcacaatttgatg Sbay.....: ----tttagtaaaggcgtaatgaaaacaaggaccaaatttggttttacacccgttcatcccaac---acccaagcac---cttttaatggaaatctttcagagcgcgcagtt-tttggca consensus: *** * ** * ** * * * ** ** * * * * * * * *** 600~720: Scer.....: tatttttcctctggcgcgtgaatagcccgcagagacgcaaacaattttcctcgcagtttttcgcttgtttaatgcgtattttcccagataggttcaaacctttcatctgtatcc-cgtat Spar.....: c---------tcgacgcgcaaatgtcacgcggtgacgcaaacaattttcttcatagtttttcgtctctctaatgcgtattttcccagacaggtcgaaatccttcatctatatcaacgtat Smik.....: cttttcctctgcatcgcgcagaagac-cgcagagacgcagatatttttattcatagacatt--actcccgaatgcgcgcctttttggcctggttgaaacacttcatctatatcaatgtat Sbay.....: attttcaaaatcttcacgcaaatccgtcgcgacaacgcaaacatttttcatttgcagtttccgccttcataatgcgaatatacccacgcaggctcgaattcttcatttatatcgatgtat consensus: * ** * *** ***** * * **** * * * ****** * ** ** ***** * **** **** 720~840: Scer.....: atttaagatggcgtttgctttctccgttgatttttttccttcttagtgatttttttgcatt--aaatcccagaacaatcatccaactaatcaagaATGCCTTCCAGATTCACTAAGACTA Spar.....: atttaagatggcctttgtttcttccattg--tttttacctacttattcaagtttggatcttcaaaatacgaaaataatcatccaactaatcaagaatgccttccagattcactaagacta Smik.....: atttaagatgactttt-ctttctctgcta-catcctgttttctttctatatctaaaatttacctaaaa--aaaccaatcatccaactaatcaaaaatgccttccagattcactaagacta Sbay.....: atttaagatgac-tttaattaatctatta-aattataactggtaaatattttttgtactgttataatacaaaaaaaaccatccaactaatcaagaatgccttccagattcactaagacta consensus: ********** * *** ** ** * * * * * * * ** * * ** *************** ************************** 840~960: total....: ====== Scer.....: GAAAGCACAGAGGTCACGTCTCAGGTATGTAGTTCCATTTGGAAGAGGGAATGAAAGAACCAAGACGGTGACTTTTTTTTTAGTGTTGTGCAACCAATATGTCGTGTGTATATCATGGTA Spar.....: gaaagcacagaggtcacgtctcaggtatgtagttccatttggaagagggaatgaaagaaccaagacggtga-ttttttttgagtgttgtgcaatcaatatggcgtgtgtatatcatggta Smik.....: gaaagcacagaggtcacgtctcaggtatgtaattccatttggaagagggaatgaaagaaccaagacggtga--ctttttcgagtgttgtgcaacccatatgtcgtgtgtac--catggtg Sbay.....: gaaagcacagaggtcacgtctcaggtatgtaattccatttggaagagggaatgaaagaaccaagacggtgacttttttttgagtgttgtgcaatcaatatgtcatgtgtataccatggtc consensus: ******************************* *************************************** ***** ************ * ***** * ****** ****** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >=============================================================================================== 960~1080: Scer.....: CAGGAGAATGTCAATCAGCTAAGTGTACTCAACATATTTCTTTGTGTTTTGATTGCGAACTTTGTATTACCATCTCACT--GTTGAGACGGCTTATTTGAG-GTAATAGCTCGAGTAAAT Spar.....: taggagactgccagtcggctaagcgtgcttacaatggttctttatgttttgattgtgaactttgtattgctatctcag---attgagatagcttatttgagtgtaatatctcgagtaaat Smik.....: tgggaaattattagctaaccaaggccgcatacaatatttcttaatgttttgatcgtgaactttgtatcgctatctcaa---agtgagatagcttactcgagtgtac--gctcgagtaatt Sbay.....: taggagattatgagcgagccgatgttgcgtacagtatttcttt-tattttgatcatgaa-tttgtatctctatcccacgttgtcgggatagcttattcgagtgtaataacccgaataaat consensus: *** * * * * * * * * ***** * ******* *** ******* * *** ** * ** ***** * *** *** * *** *** * known....: ======================================================================================================================== 1080~1200: Scer.....: GTACTCTTCCATCGCAAACTGAG-CAAAAAGAAAGTGTGCATAGCCTTTGTCATACT--TCTCCT-TTATTATAC--CATGATATTCAGAACAGTCATACTGTCT--ACTCATTTTACGG Spar.....: gtactcttccatcactgattaaaacgaaaagaaagtgtgcatagttttggctactgtgttttcat-ttattatat--catgctattcagaacagtcatactgtct--actcattttgtgg Smik.....: gtactcttccatcatgaactaaa-cgaggggaaagtgtgcaaacgcttggatatgttatgtttcc-tttttatactccatgttatccagtacagtcatactgtct--atgcattttgcgg Sbay.....: gtactcttccatcatgagcttaa-cgaaaagaaagtatgcataccgttggcctcgttctgtccccattattatat--catgttatgcagtatagtcatactatctttacacattttgtgg consensus: ************* * * * * ****** **** * ** * * ** ***** **** *** *** * ********* *** * ****** ** Sbay_spli: DDDDDD known....: ======================================================================================================================== 1200~1320: Scer.....: CTATAAAAGGTAA---CTTTCATTTAGATTATGGAAAGCAC---TAATTATCGCTGTATCAAATGGTTGTAGAGA---GCGCAATTATGAAAAAGAG--TTACCACG-TTTCTTTTGTTT Spar.....: c-atattaaagta---ctttcatttggattttggaaagtacgtcttaatatcgctatgtcgaatgtttgtagaga---gcacaattatgaaaaagag--ttaccatg-tttcttttatct Smik.....: c-gtattaagataggcttttcatctaaatgttgaagagttt--cttgatacagttgtaaaaaatg---gtagagg---gcacaacaatgaaaaagag--ttaccatg-tttcttt---cc Sbay.....: acaacaaaaggtgtatttttcaacagattgctgaaaggtatatcattatgttgccgtgtcaaattggtgtagagaagagcgcaattatgaaaaagagagttaccatggtttcttttattg consensus: * ***** * ** * * * * * *** ****** ** *** *********** ****** * ******* Spar_spli: DDDDDD known....: ======================================================================================================================== 1320~1440: total....: ======= Scer.....: CGATA--AAATGTC----CAGTTGAAAACCTGTTTTACTAACGA-TTTAAAAATTGTATTTCATTACAATATTTTT----TTTGTACAGCCGGTAAAGGTCGTATCGGTAAGCACAGAAA Spar.....: cggcagaaaatatc----taattggaagtctgatttactaacgt-tttaaaaaaattgtattattacaatatttttcttttttgtatagccggtaaaggtcgtgtcggtaagcacagaaa Smik.....: aaacagaaaaag-------aaataaaaatctgttttactaacaa-tcattatattgtatttc----caatattttta---tttgtatagccggtaaaggtcgtgtcggtaagcacagaaa Sbay.....: caggaagaaataacatcctaattagaaacatgttttactaacaaattaaaaaattgtatttcgttacaatgttttatttttttatatagccggtaaaggtcgtgtcggtaagcacagaaa consensus: * *** * * ** ** ********* * * * * * * **** **** *** ** **************** **************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =======================================================================================>= 1440~1560: total....: ======= ====== Scer.....: GCACCCCGGTGGTAGAGGTATGGCCGGTGGTCAACATCACCACAGAATTAACATGGATAAATACCATCCAGGTTATTTCGGTAAGGTTGGTATGAGATACTTCCACAAGCAACAAGCTCA Spar.....: gcaccccggtggtagaggtATGGCCGGTGGTCAACATCACCACAGAATTAACATGGATAAATACCATCCAGGTTATTTCGGTAAGGTTGGTATGAGATACTTCCACAAGCAACAAGCTCA Smik.....: gcatcccggtggtagaggtATGGCCGGTGGTCAACATCACCACAGAATTAACATGGATAAGTACCATCCAGGTTATTTCGGTAAGGTTGGTATGAGATACTTCCACAAGCAACAAGCTCA Sbay.....: gcatcccggtggtagaggtATGGCCGGTGGTCAACATCATCACAGAATTAACATGGATAAATACCATCCAGGTTATTTCGGTAAGGTCGGTATGAGATACTTCCACAAGCAACAAGCTCA consensus: *** *********************************** ******************** ************************** ******************************** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB DDDDDD Sbay_spli: BBBBBBB DDDDDD 1560~1680: Scer.....: TTTCTGGAAGCCAGTCTTGAACTTGGACAAATTGTGGACATTGATCCCAGAAGACAAGAGAGACCAATACTTGAAATCTGCTTCTAAGGAAACTGCTCCAGTTATTGACACTTTGGCAGC Spar.....: TTTCTGGAAGCCAGTCTTGAATTTGGACAAATTGTGGACTTTGATCCCAGAAGACAAGAGAGACCAATACTTGAAGTCTGCTTCCAAGGAGACTGCTCCAGTTATTGACACCTTGGCTGC Smik.....: TTTCTGGAAGCCAGTTTTGAACTTGGACAAATTGTGGACCTTGATCCCAGAAGACAAAAGAGACCAATACTTGAAGTCTGCTTCTAAGGAAACTGCTCCAGTTATTGACACCTTGGCTGC Sbay.....: TTTCTGGAAGCCAGTCTTGAACTTGGACAAATTGTGGACTTTGATCCCAGAAGACAAGAGAGACCAATACTTGAAGTCTGCTTCCAAGGAATCTGCTCCAGTCATTGACACCTTGGCTGC consensus: *************** ***** ***************** ***************** ***************** ******** ***** ********** ******** ***** ** 1680~1800: Scer.....: CGGTTACGGTAAGATCTTGGGTAAGGGTAGAATTCCAAATGTTCCAGTTATCGTCAAAGCTAGATTCGTCTCCAAGTTGGCTGAAGAAAAAATCAGAGCTGCTGGTGGTGTTGTTGAATT Spar.....: CGGTTACGGTAAGATTTTGGGTAAGGGTAGAATTCCAAACGTCCCAGTTATTGTCAAAGCTAGATTCGTCTCCAAGTTGGCTGAAGAAAAAATCAGAGCTGCTGGTGGTGTTGTTGAATT Smik.....: CGGTTACGGTAAGATCTTGGGTAAGGGTAGAATTCCAAACGTACCAGTTATCGTCAAGGCTAGATTCGTCTCCAAGTTAGCCGAAGAAAAGATCAGAGCTGCTGGTGGTGTTGTTGAATT Sbay.....: CGGTTACGGTAAGATCTTGGGTAAGGGTAGAATTCCAAACGTCCCAGTTATCGTCAAGGCCAGATTTGTCTCCAAGTTGGCTGAAGAAAAGATCAGAGCTGCTGGTGGTGTTGTTGAATT consensus: *************** *********************** ** ******** ***** ** ***** *********** ** ******** ***************************** 1800~1920: Scer.....: GATCGCTTAAgcgcatcaacaaaaactctat--gtattttccaataaa-ttatatatcttcagtttaatctaattcaacatctacttctgtattatttctatcacccattttcaccgttt Spar.....: GATCGCTTAAgcgtattgattaaaactttatatgtattttccaacaaaactatatatcttcagtattatctaatttaacatctacttctgtaatattcatatcgccaattttcactgttc Smik.....: GATCGCTTAAacgtatagattgaagctttatatgtattttcccataaa-ttatatatttcaagtataatctaattcaacctctacttctgtaatattcatatcactcatttttactgttt Sbay.....: GATCGCTTAAgcgtattgattataactttatatctattttcaaacaattttatatatttttagtataatctaattcaacatctactt-tgtaatatacatatcactcattttcgctgttc consensus: ********** ** ** * * ** *** ******* * ** ******* * *** * ******** *** ******* **** *** **** * ***** * *** 1920~2040: Scer.....: t-ttcgtcttgtct-at---tttgaagttaccag---tggcagatcccaacgcttttatcgcttttttaaaagattttcaaaatccatatataaacatagggtccaaaaagaaaacaaat Spar.....: t-ttttgctagttt-ctgtatttacatttatcatcactggcagatcccaacgcttttatcgcttttttgaaatattttcaaaaatcatatataaacaaagggtccaaaaagaaaataaac Smik.....: c-gtttcatgattttctgtgattagagttgctttcagtaacagatctcaacgcttttatcgcttttcccacagattc---aaaatcatatataaacaaagggtccaaagagaaaacaaac Sbay.....: cagtttgtcggttttcgtaattcgaaattgctgctagctattaatctcaacgcttttatcgcttttctccaagattc--aaaaaatgtatataaacaaagggcctgaagagaaaacaaat consensus: * * * * * ** *** ******************* * *** *** ********** **** * ** ****** *** 2040~2097: Scer.....: a-a--caaa---acaagaaaacctat-----tcgaggtaaagaccaggaaaaacaaa Spar.....: a-aa-caaa---ataagtatacttat-----tcgaggtgaagaccaa-atcaacaga Smik.....: a-aaacaaa---agaagaaaaaatac-----ttaagagaaagaccaa-acgagtaat Sbay.....: ataaacaaacaaacaaaaaagcagatactcgttaaaaaagagatcaa-acgagcaaa consensus: * * **** * ** * * * * *** ** * * * { alias......: ['SEC27'] chromosome.: 7 description: encodes beta'-subunit of yeast coatomer end........: 252741 exons......: [(1, 18), (219, 2870)] gene.......: SEC27 introns....: [(19, 218)] length.....: 2870 name.......: YGL137W plength....: 956 start......: 249872 tdist......: 249872 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 4 donors and 2 branches Smik: 3 donors and 2 branches Sbay: 4 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 357), ('Spar', 357), ('Smik', 357), ('Sbay', 357)] ->[('Scer', 2153), ('Spar', 2153), ('Smik', 2153), ('Sbay', 2153)] ->[('Spar', 2342), ('Smik', 2342), ('Sbay', 2342)] ->[('Sbay', 1673)] ->[('Scer', 1027)] ->[('Spar', 2776)] ] [ ->[('Scer', 504), ('Spar', 504), ('Smik', 504), ('Sbay', 504)] ->[('Scer', 2219), ('Spar', 2219), ('Smik', 2219), ('Sbay', 2219)] ->[('Sbay', 121)] ->[('Scer', 87)] ] 0~120: Scer.....: tcatccgaggagcactttggatattataatctatttttagttttgttgctttgtattgagc-tgtataaaaatcattagatccacattactaattattgaatatggac-aataatatcaa Spar.....: ccattcgaggagcactttgggaaat-ttctctattttttgttgtagggcttttaattaggcctgtataaaaattagtagatccacaagattggttattgaatatgga--aataatatcaa Smik.....: tcattcgaagaacactttaggcgat--aatttattctttaattaaactttttcaatcagga--ctagaaatattagaagtctcacggcactgaccatcaaatatttctcaataataccaa Sbay.....: ccattcaaaaaacctctaagctgaacaaatatgttttgaatagctttttattggatttgtc---tgaagtaataactagtcttaggccatcggcaaccgattaactgacgataataccaa consensus: *** * * * * * * * * ** * ** ** * * ** * ** * * * * ** ****** *** Scer_spli: BBBBBBB 120~240: Scer.....: atatattattatcaaattgattattttgtgacgcggcgtcaaattttaatcgcgtctgacgaatgagcgggtaataaactgtctttttttcatgaatgaatcgagctggcattaggaaca Spar.....: atgc--tattatcaaattaattattttgtgacgcgccgctatgttt-aatcgtgtcgcacgaatgagcgggtaataaactgtctttttttcatgaatgaatcgagctggcattaggaaca Smik.....: gtac--tattaccagatcaattattttgtgacgcggcgccaggtt--aatcgtgtcgcacgaataagcgggtaataaactgtctttttttcacgaattgattgaattagcaataggaact Sbay.....: atac-----taataggctatttattttgtgacgcgaca--aagcgcaaatcgtgtctcacgaaaaggcgggtaacagactgtctttttttcacgaatggatacaacttacattaggaaca consensus: * ** * *************** * * ***** *** ***** ******** * *************** **** ** * * ** ******* Sbay_spli: BBBBBBBBBBBB 240~360: total....: === Scer.....: tgtcgtgtaagatttgggagtaaataacagaaagctgcaataaatggtagcttgtaatggtgaattaagacacccaatcgaaacaattatacggacacgATGAAGTTGGATATAAAGGTA Spar.....: tgtcgtgtaagatttgggagtaaataacaggaagctgcaatgaatgattgctcctagtggtgaactaagaccaccagtcgaaacaattatacggacacgatgaagttggacataaaggta Smik.....: tgtcgtgtaagatt-gggagtaaataacggaaaggtacagtatatagttac--gtagtgttgaactaagaccgtcaatcgcaacaactgtacggatacaatgaagttggacataaaggta Sbay.....: tgtcgtgtcaggtttgggagtaaataaccaatagccactgcgattagttgcttgacgtgttgaggtaagatcgccaatcgaagcaataatacggacaatatgaagctggacataaaggta consensus: ******** ** ** ************* ** * * * * ** *** ***** ** *** * *** ****** * ****** **** ********* Scer_spli: DDD Spar_spli: DDD Smik_spli: DDD Sbay_spli: DDD known....: >== 360~480: total....: === Scer.....: TGTTACCAGAGCGCGTTTTGCCAATGCAATTGCGAACAAGCTCCGACAACTCCTATGATTAGGAAATGATCTCGTTCGCGAAGAATACAAAG--------------------CCTGCAAA Spar.....: tgttaccagagcgcgttttgctaatgcaattgcggacaagctccgacaactcatatggttaggaaatgatctcgttcgcgaagaaggcaaagttgaatctttcgacggctgccttttaaa Smik.....: tgttatcag----cgtgtttctaacgcaattgtgaacaagttcagagaactcatatgattatgaa-tgatctcgttcgcgttgaaggcaaagttgaatcttaccacagctgccttttaga Sbay.....: tgttagcgcagcgcgtttagttaaggcaattgcaaactggatccgagaatcctta--gtcagaaaatgatctcgttccggtagaa-gccaagtaaaggcttccaacaattgcgctctaaa consensus: ***** * *** * ** ******* ** * ** ** ** * ** * * ** *********** * *** * *** * * * Scer_spli: DDD Spar_spli: DDD Smik_spli: DDD Sbay_spli: DDD known....: ======================================================================================================================== 480~600: total....: ======= Scer.....: AAGCAAA-CATTAAGAT---TAGTTACTAACAGGAAGATTTTTGAAATAAATGCATTTGCTCT---TGGCATTTCCTTTATTTG-ACACTGTACATTTATGATAGAAAACTTTTAGTAAT Spar.....: tcgaaaa-cattaataa---tagttactaacagaaggatttt-gaaataaatgtatttgctct---ttgcattttctttatttttacactttatgcttatgatagaaaactttcagtaat Smik.....: acaaaaa-gttcaagaagtatggttactaacagaaacatttt-caaataaacgtatttgctct---ttgcattatttttatttt-tcatt-tacgcttatgatagaaaacttttagtaat Sbay.....: acaaaaatcattaagagaaagaagtactaacagccgagttttcaaaataaat-tgtttgctttgttttgcaactgttttatttt-gcgttttattcttatgatagaaaactttcagtaat consensus: *** * ** * ********* **** ******* ****** * * *** ******* * * ** ***************** ****** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =======================================================================================================>= 600~720: Scer.....: AGATCCGATCGAGTTAAAGGTATCGATTTCCATCCTACTGAGCCATGGGTTTTGACTACCTTGTACTCTGGTCGTGTTGAGCTTTGGAATTACGAAACACAAGTTGAAGTTAGATCCATC Spar.....: agatccgatagagtcaagggtattgattttcatccaactgagccatgggttttgacaaccttgtactctggccgtgttgagatttggaattacgaaacacaaattgaggttagatccatt Smik.....: agatccgatagagtcaagggtattgattttcatccaactgagccatgggttctaacaaccttgtactctggccgtgttgaaatttggaactatgagacacaaattgaggtcagatctatc Sbay.....: agatccgatagagtcaaaggtattgacttccatccaaccgaaccatgggttttaacaacgttgtactccggccgtgttgaaatttggaattacgaaacacaaattgaggtcagatccatt consensus: ********* **** ** ***** ** ** ***** ** ** ********* * ** ** ******** ** ******** ******* ** ** ****** **** ** ***** ** 720~840: Scer.....: CAAGTTACGGAAACTCCTGTTAGAGCAGGTAAATTCATTGCAAGAAAGAATTGGATAATTGTTGGGAGTGATGATTTCAGGATCAGAGTCTTCAACTACAATACAGGTGAAAAAGTTGTT Spar.....: caagttaccgaaacacctgttagagcaggtaaattcattgcaagaaagaattggataattgttgggagtgatgatttcaggatcagagtcttcaattataatacaggtgaaaaagtcgtc Smik.....: caagtcaccgaaactcctgttagagcaggtaaatttattgcaagaaagaactggataattgttggtagtgatgattttagaattagagttttcaattacaataccggtgaaaaagttgtt Sbay.....: caagtcaccgaaactcctgtaagagcaggtaaattcattgcaagaaaaaactggataattgtaggaagtgacgatttcaggatcagagtcttcaattataacactggtgaaaaagtcgtt consensus: ***** ** ***** ***** ************** *********** ** *********** ** ***** ***** ** ** ***** ***** ** ** ** *********** ** 840~960: Scer.....: GATTTCGAAGCTCATCCAGACTATATCCGTTCCATTGCTGTACATCCAACAAAGCCTTATGTTTTATCCGGCAGTGATGATTTGACAGTCAAACTATGGAATTGGGAAAATAACTGGGCC Spar.....: gatttcgaagctcatccagactatatccgttccattgctgtacatccaacaaagccttatgtcttatccggaagtgatgatttgacagtcaaactatggaattgggaaaataattgggcc Smik.....: gatttcgaagctcatccagattatatccgttccattgctgtacatccaacaaaaccttatgtcttatccggcagtgatgatttgacggttaaactatggaattgggaaaataattgggct Sbay.....: gattttgaagctcatccagactatatccgttccattgctgtacacccaacaaaaccttatgtcttgtccggtagtgatgatttaacagtcaagctatggaactgggaaaacaattgggct consensus: ***** ************** *********************** ******** ******** ** ***** *********** ** ** ** ******** ******** ** ***** 960~1080: Scer.....: TTAGAACAAACTTTTGAAGGTCACGAACACTTTGTCATGTGCGTCGCATTCAATCCAAAGGATCCTAGTACGTTTGCATCTGGGTGTTTGGACCGAACCGTTAAAGTTTGGTCATTGGGA Spar.....: ttagaacaaacgtttgaaggccacgaacattttgtcATGTGCGTCGCATTCAATCCAAAGGATCCTTCTACGTTTGCTTCCGGATGTTTGGACCGAACCGTTAAAGTTTGGTCACTGGGA Smik.....: ttagaacaaacctttgaaggtcacgaacattttgtgATGTGTGTTGCATTCAATCCAAAGGATCCTACTACATTTGCCTCGGGATGTTTGGATCGAACTGTTAAAGTTTGGTCGTTGGGA Sbay.....: ttagaacagaccttcgagggtcatgaacatttcgttATGTGCGTAGCATTCAATCCAAAGGACCCTACTACATTTGCCTCCGGTTGTTTAGATCGAACCGTTAAAGTCTGGTCGTTGGGC consensus: ******** ** ** ** ** ** ***** ** ** ***** ** ***************** *** *** ***** ** ** ***** ** ***** ******** ***** **** Scer_spli: DDDDDD 1080~1200: Scer.....: CAATCGACACCAAATTTCACGTTAACCACAGGACAAGAAAGAGGTGTGAATTATGTTGATTATTACCCGCTACCTGACAAGCCTTATATGATTACTGCGTCGGACGACTTAACCATCAAA Spar.....: CAATCGACACCAAATTTTACGTTAACTACAGGACAGGAAAGAGGTGTAAATTATGTTGATTATTACCCATTACCTGACAAGCCCTATATGATTACTGCATCGGACGACTTAACCATCAAA Smik.....: CAATCGACTCCAAATTTTACTTTGACTACAGGACAAGAAAGAGGTGTAAATTACGTCGATTATTACCCATTACCTGACAAGCCTTATATGATTACTGCATCGGACGACTTAACTATCAAA Sbay.....: CAGTCAACACCAAATTTCACTTTAACCACAGGGCAAGAAAGGGGTGTTAACTACGTTGATTACTACCCATTACCTGACAAGCCTTATATGATCACTGCGTCAGATGACTTGACTATTAAG consensus: ** ** ** ******** ** ** ** ***** ** ***** ***** ** ** ** ***** ***** ************* ******** ***** ** ** ***** ** ** ** 1200~1320: Scer.....: ATTTGGGATTACCAAACGAAGTCATGTGTAGCCACTCTAGAAGGTCACATGTCCAATGTTTCTTTTGCTGTTTTCCATCCAACTTTACCCATTATAATTTCTGGTTCCGAAGATGGCACT Spar.....: ATTTGGGATTACCAAACAAAGTCATGTGTAGCCACTCTAGAAGGCCACATGTCTAACGTTTCTTTTGCTGTTTTTCATCCAACGTTACCCATTATAATTTCTGGCTCCGAAGATGGTACT Smik.....: ATTTGGGATTACCAAACAAAGTCATGTGTAGCCACTCTAGAAGGCCACATGTCCAATGTTTCTTTTGCAGTTTTCCATCCAACTTTACCGATCATAATTTCTGGCTCTGAAGATGGTACT Sbay.....: ATTTGGGATTACCAAACAAAGTCATGCGTAGCCACTTTAGAAGGTCACATGTCTAATGTTTCGTTTGCTGTTTTCCATCCAACTTTACCAATCATAATTTCTGGTTCTGAAGACGGTACT consensus: ***************** ******** ********* ******* ******** ** ***** ***** ***** ******** ***** ** *********** ** ***** ** *** 1320~1440: Scer.....: TTAAAGATATGGAATTCTTCCACTTACAAGGTAGAAAAGACTTTAAACGTTGGTTTAGAAAGAAGTTGGTGTATCGCTACCCATCCAACAGGACGTAAAAACTACATTGCATCCGGGTTT Spar.....: TTAAAGATCTGGAATTCCTCCACTTACAAGGTGGAAAAGACTTTAAATGTTGGCTTAGAAAGAAGTTGGTGTATTGCTACCCACCCAACGGGACGTAAAAACTACATTGCATCCGGGTTT Smik.....: CTGAAGATATGGAATTCTTCCACTTACAAGGTAGAAAAGACTTTAAACGTTGGTTTAGAAAGAAGTTGGTGCATTGCCACCCACCCTACAGGACGTAAAAACTATATTGCATCCGGGTTT Sbay.....: TTAAAAATCTGGAACTCTTCCACTTACAAGGTGGAAAAAACTTTAAACGTCGGTTTAGAAAGAAGTTGGTGTATTGCCACTCATCCAACTGGCCGTAAAAACTATATCGCATCCGGGTTT consensus: * ** ** ***** ** ************** ***** ******** ** ** ***************** ** ** ** ** ** ** ** *********** ** ************ 1440~1560: Scer.....: GATAATGGGTTTACCGTACTTTCCTTGGGAAATGATGAACCAACTTTATCACTTGACCCTGTCGGTAAGCTAGTATGGTCAGGTGGCAAAAATGCCGCAGCTTCAGACATTTTCACTGCC Spar.....: GATAATGGATTTACCGTACTTTCATTGGGAAATGATGTACCAACTTTATCACTTGACCCCGTCGGTAAGCTAGTGTGGTCAGGTGGTAAAAATGCCGCAGCTTCAGACATTTTTACTGCC Smik.....: GACAACGGTTTTACAGTACTTTCCCTAGGAAACGATGAACCAACTTTATCACTTGATCCCGTTGGTAAGCTAGTATGGGCAGGCGGTAAAAATGCTGCAGCTTCTGATATTTTCACTGCT Sbay.....: GATAACGGGTTTACTGTGCTTTCATTGGGTAATGATGTGCCAACTTTATCGCTTGATCCTGTTGGTAAGCTGGTATGGTCGGGTGGTAAAAATGCTGCGGTTTCCGACATATTCACTGCA consensus: ** ** ** ***** ** ***** * ** ** **** *********** ***** ** ** ******** ** *** * ** ** ******** ** * *** ** ** ** ***** 1560~1680: Scer.....: GTCATAAGAGGTAACGAAGAAGTTGAACAAGATGAACCATTATCTTTACAAACTAAGGAGCTGGGTTCCGTTGATGTTTTCCCTCAATCTTTAGCCCATTCTCCAAATGGTAGGTTTGTT Spar.....: GTTATAAGAGGTAACGAAGAAGTTGAACAAGATGAACCATTATCTTTACAAACTAAAGAGCTGGGGTCTGTTGATGTTTTCCCTCAATCTTTAGCCCATTCTCCAAACGGTAGGTTTGTT Smik.....: GTTATAAGAGGTAACGAAGAGGTTGAACAGGATGAACCACTAGCTCTACAAACTAAAGAACTGGGGTCTGTAGACGTTTTCCCTCAATCTTTAGCCCATTCTCCAAACGGGAGGTTTGTT Sbay.....: GTTATAAGAGGCAACGAAGAAGTTGAACAAGATGAACCATTATCTTTACAAACTAAGGAACTGGGGTCCGTTGATGTTTTCCCTCAGTCTCTAGCTCATTCTCCAAACGGTAGGTTCGTT consensus: ** ******** ******** ******** ********* ** ** ********** ** ***** ** ** ** *********** *** **** *********** ** ***** *** Sbay_spli: DDDDDD 1680~1800: Scer.....: ACAGTTGTTGGGGATGGTGAATACGTTATTTATACGGCGTTGGCTTGGAGAAACAAAGCCTTCGGTAAATGTCAAGACTTTGTTTGGGGCCCCGACTCCAATAGTTATGCTTTAATTGAT Spar.....: ACAGTTGTCGGGGATGGTGAATACGTTATCTATACAGCTTTAGCTTGGAGAAACAAAGCATTTGGTAAATGCCAAGACTTTGTTTGGGGCCCCGACTCCAACAGTTATGCTTTAATTGAC Smik.....: ACAGTTGTGGGGGATGGTGAATACGTTATCTATACAGCTTTAGCCTGGAGAAATAAAGCGTTTGGTAAATGTCAAGACTTCGTTTGGGGCCCAGATTCCAATAGTTATGCTTTAATTGAC Sbay.....: ACAGTTGTTGGGGACGGTGAATACGTTATTTATACAGCTTTAGCTTGGAGAAACAAAGCCTTCGGTAAATGCCAAGACTTTGTTTGGGGTCCTGACTCCAACAGTTATGCCTTAATTGAC consensus: ******** ***** ************** ***** ** ** ** ******** ***** ** ******** ******** ******** ** ** ***** ******** ******** 1800~1920: Scer.....: GAAACTGGGCAAATTAAATACTACAAAAACTTTAAAGAAGTCACATCATGGTCTGTCCCAATGCATTCTGCTATTGATAGATTATTTTCAGGTGCCTTGTTGGGTGTGAAGTCTGATGGC Spar.....: GAGACTGGACAAATCAAATACTACAAGAATTTCAAAGAAGTTACATCATGGTCTGTCCCATTGCATTCTGTTATTGATAGACTATTTCCAGGTGCCTTATTGGGTGTGAAGTCTGATGGC Smik.....: GAGACCGGGACAATAAAATACTACAAAAATTTCAAAGAAGTTACATCATGGTCGGTCCCCTTGCATTCTGCTATTGATAGACTATTTTCGGGTGCCTTGTTAGGTGTCAAATCTGACGGC Sbay.....: GAGACCGGACAAACAAAATATTACAAGAATTTCAAAGAAGTCACATCATGGTCTATCCCATTACATTCAGCAATCGATAGGCTATTTGCAGGTGCTTTATTGGGTGTTAAATCCGAGGGC consensus: ** ** ** ** ***** ***** ** ** ******** *********** **** * ***** * ** ***** ***** * ***** ** ** ***** ** ** ** *** 1920~2040: Scer.....: TTCGTCTATTTCTTCGATTGGGACAACGGTACGCTAGTTAGAAGAATTGATGTTAATGCTAAGGATGTCATTTGGTCCGATAACGGTGAGCTGGTGATGATTGTCAACACCAATAGTAAT Spar.....: TTTGTTTATTTCTTCGACTGGGACAACGGTACACTAGTTAGAAGAATTGATGTTAATGCTAAGGATGTAATTTGGTCCGATAACGGTGAGCTAGTAATGATTGTCAACACCAATAGTAGC Smik.....: TTTGTTTATTTCTTTGACTGGGATAACGGTACACTTGTGAGAAGAATTGATGTGAACGCTAAGGACGTGATTTGGTCTGACAATGGTGAACTAGTGATGATTGTTAACACCAACAATAGC Sbay.....: TTTGTTTATTTCTTTGACTGGGACAACGGTGCGTTGGTCAGAAGAATTGATGTTAATGCTAAGGACGTAATTTGGTCCGATAACGGTGAATTAGTCATGATCATTAACACTAATGACAGC consensus: ** ** ******** ** ***** ****** * * ** ************** ** ******** ** ******** ** ** ***** * ** ***** * ***** ** * 2040~2160: total....: ====== Scer.....: GGTGATGAAGCAAGTGGTTACACATTATTATTCAACAAGGATGCTTACCTTGAAGCAGCAAATAATGGCAATATCGACGATTCAGAAGGTGTTGATGAGGCTTTTGACGTATTGTATGAA Spar.....: GGTGATGAAGCGAGCGGTTACACCTTATTATTTAACAAGGATGCTTACCTTGAAGCAGCAAGTAATGGTAATATCGACGATTCAGAAGGTGTTGATGAAGCTTTTGACGTATTGTATGAG Smik.....: GGTGATGAAGCCAACGGCTACACGTTATTATTCAATAGGGATGCTTACCTTGAAGCAGCAAATAATGGTAATATCGATGACTCGGAAGGTGTTGATGAAGCTTTTGACGTATTGTATGAG Sbay.....: GGTGACGAAGCCAGTGGTTACACTTTATTATTCAATAGAGATGCTTACGTCGAAGCAGCAAAAGACGGGAACATTGACGACGCAGAAGGTGTTGACGAAGCATTCGACGTATTGTATGAA consensus: ***** ***** * ** ***** ******** ** * ********* * ********** * ** ** ** ** ** * *********** ** ** ** ************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2160~2280: total....: ======= Scer.....: CTAAGTGAATCCATTACATCAGGCAAATGGGTTGGTGATGTCTTTATCTTTACCACAGCAACTAACAGGCTGAACTACTTCGTAGGTGGAAAGACTTATAATTTAGCCCATTACACAAAG Spar.....: CTAAGCGAATCCGTTACATCAGGCAAATGGGTTGGTGATGTCTTTATTTTTACCACAGCAACTAACAGACTAAACTATTTCGTCGGTGGTAAGACTTATAACTTAGCCCATTACACAAAG Smik.....: TTGAACGAATCAGTTACGTCAGGTAAATGGGTTGGTGATGTTTTCATATTTACTACGGTTACTAATAGGTTAAATTACTTTGTTGGTGGTAAGACTTATAATTTAGCCCATTACACAAAG Sbay.....: TTAAGCGAATCTGTTACATCGGGTAAATGGGTTGGCGATGTCTTTATTTTCACCACAGCAACTAACAGGCTAAATTACTTTGTCGGTGGTAAGACTTATAATTTGGCTCATTACACAAAA consensus: * * ***** **** ** ** *********** ***** ** ** ** ** ** * ***** ** * ** ** ** ** ***** *********** ** ** *********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 2280~2400: Scer.....: GAAATGTATCTATTGGGCTATCTAGCACGTGATAATAAAGTATATTTAGCTGACAGAGAGGTCCATGTTTATGGTTACGAAATATCTCTAGAGGTGCTGGAGTTCCAAACATTGACTTTA Spar.....: GAAATGTACCTTTTAGGCTATTTGGCACGTGATAATAAAGTATATTTAGCTGACAGAGAGGTGCATGTTTATGGTTACGAAATATCCCTAGAGGTTCTGGAGTTCCAAACATTGACTTTA Smik.....: GAAATGTATCTGTTAGGCTATTTGGCACGTGATAATAAGGTATATTTAGCAGATAGAGAGGTGCATGTTTATGGTTATGAAATATCTTTAGAGGTCCTTGAGTTCCAAACACTGACTTTG Sbay.....: GAAATGTATCTATTGGGCTATTTGGCTCGTGATAACAAAGTCTATTTAGCTGATAGAGAGGTGCATGTTTATGGTTACGAAATATCTTTAGAGGTTCTCGAGTTTCAAACATTAACTTTG consensus: ******** ** ** ****** * ** ******** ** ** ******** ** ******** ************** ******** ******* ** ***** ****** * ***** Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2400~2520: Scer.....: AGAGGGGAAATTGAAGAAGCCATTGAAAATGTACTCCCAAATGTTGAGGGTAAGGACTCTTTAACAAAAATTGCTAGATTTCTGGAAGGTCAAGAGTATTATGAAGAAGCACTGAATATT Spar.....: AGAGGGGAAATTGAAGAAGCCATTGAAAATGTGCTTCCAAATGTTGAAGGTAAGGACTCTCTTACAAAGATCGCTAGATTTCTGGAAGGCCAAGAATATTATGAAGAAGCATTAAATATT Smik.....: AGAGGAGAAATTGAGGAAGCTATCGAAAATGTTCTTCCAAATGTTGAAGGTAAGGATTCTTTGACAAAAATAGCTAGATTTTTAGAAGGCCAAGAGTACTATGAAGAAGCATTAAATGTC Sbay.....: AGAGGAGAAATTGAAGAAGCTATCGAAAATGTTCTCCCCAATGTTGAAGGTAAGGACTCTTTGACTAAGATTGCTAGATTTTTGGAAGGCCAAGAATATTATGAAGAAGCACTAAACATA consensus: ***** ******** ***** ** ******** ** ** ******** ******** *** * ** ** ** ********* * ***** ***** ** ************ * ** * 2520~2640: Scer.....: TCCCCTGATCAAGATCAAAAATTTGAGCTAGCCTTAAAAGTCGGCCAACTTACGCTTGCTCGCGATTTGTTGACAGATGAAAGCGCCGAAATGAAATGGAGAGCCTTGGGTGATGCTTCC Spar.....: TCTCCTGATCAAGATCAAAAATTCGAGTTAGCCTTAAAAGTCGGTCAACTTACGCTCGCTCGCGATTTGTTGACGGATGAGAGCGCTGAAATGAGATGGAGATCCTTGGGTGATGCTTCC Smik.....: TCACCCGACCAAGATCAAAAATTCGAATTAGCATTAAAAGTCGGTCAACTTTCTCTAGCTCGTGATTTGTTGACAGATGAAAGTGCAGAGATGAGATGGAGATCACTGGGTGATGCGTCT Sbay.....: TCCCCAGATCAAGATCAAAAGTTCGAATTAGCCTTAAAAGTTGGTCAACTTACGCTAGCTCGTGATTTGTTGACAGATGAGAGTGCTGATATGAGATGGAGATCACTGGGTGACGCTTCT consensus: ** ** ** *********** ** ** **** ******** ** ****** * ** ***** *********** ***** ** ** ** **** ******* * ******* ** ** 2640~2760: Scer.....: TTACAAAGGTTCAATTTTAAACTTGCTGTTGAAGCTTTCACAAATGCACATGATCTAGAATCTTTATTTCTATTGCACTCATCTTTTAATAACAAGGAGGGGTTGGTCACTTTAGCTAAA Spar.....: TTGCAGAGGTTCAATTTTAAGCTTGCTATTGAAGCTTTCACAAAGGCGCATGACCTAGAATCTTTATTCCTATTGCACTCATCTTTCAATAACAAAGAGGGATTGGTCGCTTTAGCTAAA Smik.....: TTACAAAGGTTTAATTTTAAGCTTGCCATTGAAGCGTTCACAAATGCACATGATCTAGAATCTTTATTCCTATTGCATTCATCTTTCAATAACAAAGAAGGATTGGTGGCCTTGGCTAAG Sbay.....: TTACAAAGATTCAATTTCAAACTTGCTATTGAAGCTTTCACAAAAGCACATGACCTAGAATCCTTATTCTTATTGCATTCATCTTTCAACGATAAAGAGGGATTAATTACTTTAGCTAAA consensus: ** ** ** ** ***** ** ***** ******* ******** ** ***** ******** ***** ******* ******** ** * ** ** ** ** * * ** ***** 2760~2880: Scer.....: GATGCTGAAAGGGCCGGTAAATTCAATTTGGCTTTTAATGCATATTGGATCGCTGGCGATATACAAGGCGCTAAAGATCTTTTAATCAAGTCTCAAAGGTTTTCCGAAGCCGCTTTCCTT Spar.....: GATGCTGAAACAGCCGGTAAGTTCAATTTGGCTTTCAATGCGTATTGGATCGCTGGCGATATACTAGGCGCTAAGGATCTTTTAATCAAGTCCGAAAGGTTTTCTGAAGCCGCTTTCTTA Smik.....: GATGCAGAAACAGCTGGTAAATTCAACCTGGCTTTCAATGCATATTGGGTCGCGGGTGACATAGAAGGTGCTAAAGATCTTCTGGTCAAATCTGAAAGATTCTCTGAAGCCGCTTTTCTA Sbay.....: GATGCTGAAACTGCTGGTAAATTCAATTTGGCATTCAATGCTTATTGGGTTGCCGGTGACATAAAAGGCGCTAAAGAACTTCTAATCAAATCCGAGAGGTTCTCAGAAGCAGCTTTATTA consensus: ***** **** ** ***** ***** **** ** ***** ****** * ** ** ** *** *** ***** ** *** * **** ** * ** ** ** ***** ***** * Spar_spli: DDDDDD 2880~3000: Scer.....: GGATCAACATACGGTTTAGGAGATGATGCAGTCAACGATATTGTTACAAAATGGAAGGAAAATTTGATACTCAACGGTAAGAATACTGTATCAGAAAGAGTTTGTGGGGCCGAAGGTTTA Spar.....: GGATCAACGTATGGTTTGGGGGATGATGAAGTTAACGATATTGTTACAAAATGGAAAGAAAATTTGATACTTAATGGTAAGAAGACTGTATCAGAAAGGGTTTGCGAGGCCGAAGGTTTA Smik.....: GGATCGACGTATGGTTTAGGTGATAATGAAGTTGATGATGTTGTTAAAAAATGGAAACAATATTTGATACTTCATAATAAAAAGGCCGTATCAGAAAGAGTTTGTGAGGCCGAAGGTTTA Sbay.....: GGATCGACATATGGTCTAGGGGATAATGAAGTTAACGATATTGTCAAGAAATGGAAAGAAAGCTTGGTACTCAATGGTAAGAAAGCCGTATCGGAAAGAATATGTGAGGCGGAAGGATTA consensus: ***** ** ** *** * ** *** *** *** * *** **** * ******** ** *** **** * *** ** * ***** ***** * ** * *** ***** *** 3000~3120: Scer.....: CCAGGCTCTTCGAGTTCAGGAGATGCCCAACCACTCATTGACTTAGATTCCACTCCAGCCCCAGAACAAGCTGACGAAAACAAAGAAGCTGAAGTTGAGGACAGCGAGTTTAAAGAATCC Spar.....: GCAAGCTCCTCGAGTCCAGCCGATACCCAGCCGCTGATTGATTTAGATTCTACTCCAACACCAAAAGAAGCTCAAGAAGACGAAGAAGCTGAAGACGAAGACAGCGAGTTTAAAGAATCC Smik.....: CCAAGCTCTTCAAGCCCAGCCGATGCTCAATCACTAATTGATTTAGATTCCACTCCAACACCAAAACAAGCATTCGAAAACGAAAATGCTGAAGCCGAAGAGAGCGAGTTGAAAGAATCC Sbay.....: CCAAGCTCATCAAATGCAGCTGACGCGCAACCTCTAATTGATTTAGATTCTGCTCCAACATCGAAACATGCCCAAGAAACTCAAAATACTGGAACTGAAGAAGGCGAGTCCGTAGAATCA consensus: ** **** ** * *** ** * ** * ** ***** ******** ***** * * ** * ** *** ** * *** * ** ** ****** ****** 3120~3240: Scer.....: AACTCAGAGGCAGTTGAAGCCGAAAAAAAAGAAGAGGAAGCTCCCCAGCAACAACAATCAGAACA------------ACAGCCGGAGCAAGGAGAGGCAGTGCCGGAGCCTGTGGAAGAA Spar.....: AATTCAGGGGAAGCTGAAGTCGAAAAAGAAGAGGAAGCTCCACAACAACATCAACAACCACAACA------------ACAGTCAGAGCAAGGAGTGGCAGTGTCAGAACCAGCAGAAGAA Smik.....: AATTTGGAAGAAGCTAAAGTTGAAGGAGAAGAAGAAAATACTTCACAAAAACAAGAAAAAGAACATGAACATGAACAAAAGTTAGAGCAAGGAGAGGTTGTACCAGAACCGGCAGAAGAA Sbay.....: AACATAAAAGAACCTGAAGGAGAAAAGGCAGAGGAAGCTTCACAACCAGAAGAAGAAGAAGAACA------------AGGGCAAGAGGAGAAGGCAACAGCCGCAGTCGCTGCAGAAGAA consensus: ** * * * *** *** *** ** * * * ** ** * **** * * *** * * * * * * * ****** 3240~3360: Scer.....: GAGAGTTA-Accacctcatagaaagacaaataaagaactaatcaacgaatgagaaaacatctttaatggatggtaaacatatatatata----------------------------cag Spar.....: GAGAGCTA-Accacctcgtagaaagacaaataaagaactaatcaacaaatgagaaaacatctccaatggatggtatacatatatatata----------------------------cag Smik.....: GAGAGCTA-Accaccccgt-gtaagacaaacaaagaactaatcaacgaatgaaaaaacatctctaatggatgatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtatttacac Sbay.....: GAGAACGAGAGCAAGTCGGAGAAAGACGAATAAagaaccagtcaatgaataacaaaa--tctctaatagatgatatatatctatatatat------------------------ttacac consensus: **** * * ** * * ***** ** ******* * **** *** * **** *** *** **** ** * ** ******** ** 3360~3456: Scer.....: atgtacactttttatttttattgcgataggtgtgaaaatgaacgtgacttgaaactttgcgcgcaaacaaatcata-------------------- Spar.....: atgtacacttttttattttattgcgataggtgtaaaaatgaacgtgacttaaagctcttcgcgcaaccaaatcatatca----------------- Smik.....: atgtacctctttttacttatttgcgacaagtgcaaaaataaacaaaacct----tctcgcaacataacacacca---------------------- Sbay.....: atgtacactttttgattt--ttattacaagaataaatagaattaaaaaactgaagaggataaacaaacgtgacttacaatttgtggaaacaaacca consensus: ****** **** ** ** * * * ** * * * * * * { alias......: ['MPT5', 'HTR1', 'PUF5'] chromosome.: 7 description: Product of gene unknown end........: 170575 exons......: [(1, 3), (644, 3220)] gene.......: MPT5 introns....: [(4, 643)] length.....: 3220 name.......: YGL178W plength....: 1073 start......: 167356 tdist......: 167356 type.......: ORF up.........: 1 } Scer: 11 donors and 8 branches Spar: 0 donors and 0 branches Smik: 8 donors and 11 branches Sbay: 8 donors and 9 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1621), ('Scer', 1628), ('Smik', 1621), ('Sbay', 1617), ('Sbay', 1621)] ->[('Sbay', 31), ('Sbay', 37), ('Sbay', 41)] ->[('Scer', 2416), ('Smik', 2416), ('Sbay', 2416)] ->[('Scer', 3830), ('Smik', 3830)] ->[('Scer', 5518), ('Smik', 5518)] ->[('Sbay', 105)] ->[('Sbay', 1008)] ->[('Scer', 235)] ->[('Scer', 983)] ->[('Scer', 1242)] ->[('Scer', 1434)] ->[('Scer', 2160)] ->[('Scer', 6536)] ->[('Smik', 155)] ->[('Smik', 448)] ->[('Smik', 771)] ->[('Smik', 4844)] ] [ ->[('Scer', 1738), ('Smik', 1738), ('Sbay', 1738)] ->[('Scer', 3066), ('Smik', 3066), ('Sbay', 3066)] ->[('Scer', 1306), ('Smik', 1306)] ->[('Scer', 3197), ('Smik', 3197)] ->[('Scer', 5240), ('Smik', 5240)] ->[('Scer', 6301), ('Smik', 6301)] ->[('Smik', 2376), ('Sbay', 2376)] ->[('Sbay', 747)] ->[('Sbay', 2245)] ->[('Sbay', 2366)] ->[('Sbay', 5012)] ->[('Sbay', 5360)] ->[('Sbay', 5453)] ->[('Scer', 1149)] ->[('Scer', 3374)] ->[('Smik', 905)] ->[('Smik', 5039)] ->[('Smik', 5540)] ->[('Smik', 5552)] ] 0~120: Scer.....: attcttcaaagcttccttttt-atatgcagaatatgtgcgc---agca----------atttcaaggcgtagagtacgagtcactagaggctcgagcattatataccacttacaagtagt Smik.....: attcttcaaagcttccttttttagatggggagtgtgcgcac---aatg----------atttcaagtaggagagcacagatcaccagaagcccaagcgttatatattaggtgccactatt Sbay.....: agtcttcaa-gtttccttcctgaaatggggagtatgtgtacgtgagtgtgtgggccgtatttcgaggcgtgaaggaccgaccactagcagcccaagcaatatatagtatgtttcactaat consensus: * ******* * ****** * * *** ** * ** * * * ***** ** * ** ** *** ** ** * *** ****** * * * ** * Sbay_spli: DDDDDDDDDDDDDDDD DDDDDD 120~240: Scer.....: gt-ttcttattggggacacctgtcctaacaat---gtatggctttatataccgcgcggataagtaaggcacacccgctcttcgtataatacccgcacaaaagattcagggaccggg--ta Smik.....: tc-atttactagcggacacctgttccaccaactacgtatgacgttatataccgcgcggataagtaaggtacgcccgctcttcgtataatacccgcacaaaggattaagggaccgagcata Sbay.....: gccattcttctgccgacacctgg--caacaagtatacatgacgttatataacgcgcggata--taaggtacgcccactggtcgtacaatgcccgcacaaaaaatccagggaccggg--ta consensus: * * ******** * *** *** * ******* ********** ***** ** *** ** ***** *** ********** ** ******** * ** Scer_spli: DDDDD Smik_spli: DDDDDD 240~360: Scer.....: tgctcaacgaaaaaaatagccaaga------------------ttgttgcgagtcctcatcaatgagg--acatacaga-gaataaaaacagcc-atattttgcttgctgaaggacgttg Smik.....: tgctcaacgaaaaaaagagccaagaggcgtggtcaaggcagaattacaagaaggcctttacggtgaga--acatccaaacaaatagaaattgtc-ccatcattttgccaggatgattttg Sbay.....: cgctcaacggaaaaaatagccaggaggagacgt--ggacaacattgctgaggacccctcctgggggggtggtactcaaa-agatagcaaccgtagaccttgaaagaccaataagagaagg consensus: ******** ****** ***** ** ** ** * * * ** * *** ** * * * * ** * Scer_spli: DDD 360~480: Scer.....: tgcaaaccgaagatatcagcggtagtctttataggacccgt-tggtttattatatacaaagggatctttaaaaggtccggtgcgaggggacgggtggagatggaagttatcaaccaaatg Smik.....: tacttactgaagataacaac---attgtgcatgaaaagctc-tcgtttgttttatacaaaaggatctctaaaaggtccggtgtgagggg-tatgtgtcgatggaagatatcaacaaaatg Sbay.....: ccggcgctctaggataaagtg-tattgcacagaaggaactcgttgagccttttatacaagaagatcttaaaaaggtccgctgggagggg---tgtactgatggagggtatcaacaaaatg consensus: * ** * * * * * * * ** ******* ***** ********** ** ****** ** ****** * ******* ***** Smik_spli: DDDDDDD 480~600: Scer.....: caatttatccgaagcgc-aaaaaaaataaaggtgctccgatggaccttagaaaggaactccaaaatgctgtgatggaccggcgagggcggtaaacgaaactaccacattgcataagaaac Smik.....: caatttgcccgaggcgcgaaaaaaaataaaggtgtcccaa-agacctt-gaagggaattccaaaaggctgtaacagacggaggagagaggtaaacgagaagatcgtattacccaaaaaaa Sbay.....: caatttatccgcggcgc--aaaaatttaaaggcgtcacgacagaccttttagaggaattccgcatggctgtaacacac----------ggtaaacgagcaagtcacaccgagcccacaac consensus: ****** *** **** ***** ****** * * * ****** * **** *** * ***** * ** ********* * * ** 600~720: Scer.....: aaaatgt---acggccccttctacacaatctatttatggttttcgtcttgacctcctaattacttaattaatgattacatttcttaaaa---gcacaaaaataaagtagctacccttctt Smik.....: gcacagctcaacggcgtcttctacattacatgcctactactatcattatcacattattactaccttcttagtcattatattgcaaggcgtgtgtgataaaaacaagtgactgtgcttttc Sbay.....: acagacc---gcaataccaactccac-----gcccaagagatctcttaccgctctgataatattctat-actaaatacataacaacaaa-----caagtggctgtgtacacggagctcct consensus: * * * ** ** * * * * ** * * * * ** ** * ** * 720~840: Scer.....: aagccatagtagttaaagcctcaagtgc--attgataatctcctgaccctaggtcg----tctttcgcgtgggctatcgccacctaaggaaaggattaaatggagcaagtattgga-aat Smik.....: atgcaatagtcattaaacattctagtatctgttcatgatctcgtgacccttgtacg----tcttccgcactcatcgccgccaatcgggataattttttgattgaggcagtgtcaga-atg Sbay.....: aaggaacagtaaatggac-ctcgagtatactaacaaaatctcctgatccttccatacctttctttcgcgttcatgatcaccaccctaccccgat-ttgagtgggcgcagtgcaaaagaat consensus: * * * *** * * ** *** * ***** *** *** **** *** * *** ** * * *** * * Smik_spli: DDDDDDDDDD Sbay_spli: BBBBBBB 840~960: Scer.....: gtaaagaaattgcagaatgttctgattacttttcatcacccaaagag---tccat-actaccact-------accaccaaccattgccggtgagcggtttcttgctcattaacatgacg- Smik.....: ttaaaagagccctacaaatctttgctttcttttcaccgcccagcggcctttttgc-accgctacttactaatactactacctattgtctttgagcggtttctttctcgctaatatgagaa Sbay.....: gttaggagcccgtactatgcttt--ttttttttctttacccaaagcgtgctctgccataaccacc-agtagtagtactacctaccgccc-tcaccggtttcttgtttgccagtagtgaag consensus: * * * * * * ** ***** **** * * * * ** * ** * * * * * * * ********* * * * Smik_spli: BBBBBBB 960~1080: Scer.....: tacaagggaacggaatgtcccttgtacgttgtaatgtcttttgctctcgtaaag-aagcc-tatacacgccccttccttccgcccttcggcatccgctgccaactgggtgggggctcaat Smik.....: tgcaaggggacagaatgtgctctgtgtgtcgcgctttctttttttctcgtaaagcgagcc-tactcataccccttccttccgcccttc---tctcgctgccaatggggtgagggctcaat Sbay.....: tgaaaggggacgggatgtcccctatacgctgtgctttcttttgctctcgttaagtgtcccgcgcacgcaccccttccttccggcctcaaactcccactggtgccaaaccgggcgccggcc consensus: * ***** ** * **** * * * * * * ****** ****** *** ** * ************* *** * *** * * ** Scer_spli: DDDDDD Sbay_spli: DDDDDD 1080~1200: Scer.....: ggatctctttactctggcccttagaagccttctgaa-attctcggctta--ggcatcgaacgatgaagaaactaactaaaaatatacgccatttttttggggagggggggccgcactgaa Smik.....: ggatctctttgctttggcatcaagacacacttctga-attctcggctaaagggcatcgaacgatga-ggaattttctaaaaataaacgccattttt--gagagggggaagtcgca----- Sbay.....: taaatgctctgc-ctggccctcagaaacatttctgacagcctcggctta-gggcatcgaacgatgaggaagcttgctaaaaataaacgccgtttt-----------ggagccgca----- consensus: * ** * * **** *** * * * * ******* * *************** * * * ********* ***** **** * * **** Scer_spli: BBBBBBB 1200~1320: Scer.....: acgcgaaatgccaaa--aaaacgcgaaacgccgcagtaaaaggtcagtaccgcgcaaaaaat--acaaaaatgacaacaatattg--gcctttcttttcctaaagcaattaactggaaa- Smik.....: acgccaaatgccgaacaaaaacgcgaaacattgcagtgaaaagacagtaccacgcaaaaaacg-acaaaaatgacaacaaccacaaagcttttcttttcctaaagcaattaactaaaga- Sbay.....: acgcgaaacgccggt-agaaacgcgaaacgccgcagtgaaaatgctgtaccgcgcaaaaaaaatacaaaaatgacaacaatgacc--ggcatttttttcctaatgcaaaaagctggaaaa consensus: **** *** *** *********** ***** *** * ***** ********* **************** * ** ********* **** * ** * * Scer_spli: DDDDDD BBBBBBB Smik_spli: BBBBBBB 1320~1440: Scer.....: gcgaggttctaaacatctggccaacccctaaattttt--aataattccgaagcgggatatattgcatctggcaatct-gaaaagcaatagaaagaagcggcctagtactgcatagtgagt Smik.....: gcgagactatag-catctggccaacccctaattttttctaacaattccgaagcgggatatattgcatctggtaatcttgaaaagaaagaagaatatgcaacccagtataatatcatg--- Sbay.....: gcgagatttcag-cttctagccaacccctaaaatttgctgtaaattccgaagcgggatatatttcatgtgattattatgtggaaaagaaaa-------ggcacaatacaatgtagtg--- consensus: ***** * * * *** ************ *** ********************* *** ** ** * * * * * * ** * ** Scer_spli: DDDDDD 1440~1560: Scer.....: gataaaatatacatattaaggttggggaa-------------atggtacgcgctttcaagtagctagaaagatctgaatgttct-gaagtacggtttggatttatacgcggttatttcct Smik.....: -ataaaatgtagagaataaggttgggaaagtggcagaaaagtatggtaaaagctgccaggttggtagaagaatctcaatcttct-ggagtacagcttacatctatacgcacttgttttct Sbay.....: -ataagatgggcgtaataaggttg------------------acgttacgccctcctcgg--gctcgaagcacctcaatgctcccggagtacaggctgcgcctgtgtgcggttatttccc consensus: **** ** * ******** * * ** ** * * * *** * ** *** ** * ***** * * * * ** ** *** * 1560~1680: Scer.....: gg---actagcttagagccaattaatactgacgatt--gcctctttttctttaccgtttatgtatgctgtatgccctt-ttcatgtataaaagaagggtaatttaaaaaagtttataatc Smik.....: gg---attagctcga--caaactagtattgaggtttttgcctttgttactttgccgtttatgtatgcaatatgccctt-ttcatgtataaaagaagggtaatttaaaaaactttataatg Sbay.....: gggagaagagctcgg--ccaattagtactggctgtt--gcctctcttgctt-gccgtgtatgtatgtataatgtgctcctttatgtataaaggaagggtaatt-aaaaaactttatattg consensus: ** * **** * ** ** ** ** ** **** * ** *** **** ******** *** ** ** ********* *********** ****** ****** * Scer_spli: DDDDDD DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDDDDDD 1680~1800: Scer.....: atccagattccttattttttttcttctttcgccaggtgtt------ttacccagctaagactaaccttgtggttcagattacactagtattgccgtccgatattacaattctgaaatcag Smik.....: atccagattccttatttttt--cttctttcgctaggagtt------ttacccagctaaaactaaccttgtggttcaggttacactactgttgccgtccgatattacaattctgggatacg Sbay.....: atccagatttct-attttttttcttcttttgctaggtgttggccttttgcctagctaagactaaccttgtggttcacattactttactactgccgtccaatattacaattctgaaatcag consensus: ********* ** ******* ******* ** *** *** ** ** ****** ***************** **** ** * ******** ************** ** * Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1800~1920: Scer.....: ttttcttgtgatcattctttttttctctcttgccattcttaaacgtggcctacaagaact----------------------cttcttctttcct-ggttcgcatctgtgttaaacgtat Smik.....: ttttcttgtgatcattctttttttccctcttgccattcttaaacgtggcctacaactactt---------------------cttcttctttccttggtaaaaatctgtgttacacctac Sbay.....: ttttcttgtgatcattctttttttccctcttgccattcttaaaggtggtctgcaacaacttcttcttcttcttcttcttcttcttcttcttcccttcgtagagacgtgtgttaaacatat consensus: ************************* ***************** **** ** *** *** ********* *** ** * ******* ** ** 1920~2040: Scer.....: agattttcttacatagaggcctaaaaagcataataggtggtttcctttcaatatatatctgaaacattgaatatactgaacacaattcacatttcaaaaccttgggtactgttgagtcaa Smik.....: gttttatcttacatacaggccaagaaagtatagttggtagttccacttcgttatatatcagaaacattgaatatactgaaaacaattcacattt-aagaccttgaatactgttgaatcaa Sbay.....: atttcttctcacgcacaggccaaaacagcatactaggtggttccctttcaatatatatca-aaacgttgaatatactgagaacaattcacattctagaagcttaggtactatcgaatcta consensus: * *** ** * ***** * * ** *** * *** *** * *** ******** **** ************* ************ * * *** **** * ** ** * 2040~2160: Scer.....: catcaagatcagc-ctatttca--taatttactttatcttttca-cacaaaaagagaacaggtaaaaaagaacagatctgctagccccgagaagatcattgacacatcattgattggcaa Smik.....: cgtcaatatcagc-ctctttta--tcatctactttatcttttca-cacaaaaag-gaacagataaaaaataataggtctgccaccttcgacaagatcattggcaaatcattgtttagtaa Sbay.....: tacggagatcagcactattccaagtcatttactttatctcttcaacactgaaac-gaacgggtaaa--ataccagaactgccactgcccaacagatcattgata-gccattgattgacaa consensus: * ****** ** ** * * ** ********** **** *** *** **** * **** * * ** **** * * * ********* * ***** ** ** 2160~2280: Scer.....: gttaagtaataaaagaaaggtaataacatcaagaagtcaagcgccttgaaattactagatttgg-actacggatcagcaaaagcctgcta---------------ctacaaccgccactt Smik.....: ctcaagtaacaaaaaaaa---aaccaaatcaaggagtcaaccgcttttgaattattacatttgg-acgatagatcaacaaaagcctttta---------------cta---ctgctactt Sbay.....: ccacagcagtaaaataaa----------ctgagaagccacaaagtttcgaatcgtcacattttatacgatagatcaaggaaagcctactaatattattactactactactactgctacta consensus: ** * **** *** ** ** ** ** *** * **** ** * ***** ******* ** *** * ** *** Scer_spli: DDDDDD Sbay_spli: BBBBBBB 2280~2400: Scer.....: ttactattccttaagataaaagctaaaaaaccaaaaaaaaaaaaaaaaaaacctcctcaactcctctccaacacatagtaaagcgaattctacgcaaatttataaatcaattacgatttt Smik.....: ttactattactcaaaataaaa-tcaaaaaatcaaaaaaaaaca---------ttcttaacttcctcccaagaacacagtaaaacaaactcgacgcaaactaacaaatcaatcaagatttt Sbay.....: ctactatttctagaaataaaaactaaaaagaccaaaaaaaaaaaacg-----tcccccacgccccccaaaaaatacaataaaacaaaactaacgtaaactaacaaatcaattacgatttc consensus: ******* ** * ****** ***** * ******** * * * ** * * * * * **** * ** *** *** * * ******** * ***** Smik_spli: BBBBBBB Sbay_spli: BBBBBBB BBBBBBB 2400~2520: Scer.....: tccagtttctcttATGGTATGTATTATCTCTTAATTCCCAATATTTTTCTT------------CGCCAATGGAGCATAAGCTTTAA---------------CGGGATCTTCTAACAACAA Smik.....: tccagttgctcttatggtatgtataatctctccattccctttatttttttcaaaaatttcctgcgccaatggagtataagctacaa---------------tgggatctttaaacaatga Sbay.....: tcaagttgcccttatggtatgtataacctctctattctcgt--tctttcccagtatcgtccttcgccgatggagtataagctacaagaataaataatcttttaggaccttctaacagcaa consensus: ** **** * ************** * **** **** * * *** **** ****** ******* ** *** *** **** * Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >======================================================================================================= 2520~2640: Scer.....: ATAGCATAATAACCAAAAACCAGCTTCAGTGGGATCAG-CCTATCGACACGCCTTTTTTAGCGG-TCTAACAATCTCCGTTTATGTCGT-ATGGAATTTCTGATACTTGACCCTACCTTA Smik.....: atgatacaatagtcaaatac-aacttcaatgggctcgggcttatccgtacacattttttaggagatctattaatctccgcttatgtggttaaggagtttttgagacttggccctacctta Sbay.....: atgagacagcagccgggatcaaatttcaacgggctcaaactcattcgtgccatacattccagagatcgactgatcttcttttgtatggc-gtggaattccgcaaaccgggccctacctta consensus: ** * * * * * * **** *** ** * ** * ** * ** * **** * ** * * * *** ** * ** * ********** known....: ======================================================================================================================== 2640~2760: Scer.....: TTTCTCGAATATGCCTATAAGGATTTTCTCGAAAGAAGGGCTTCGGGAAAGAGGCGCCTCAGGCAAAAA-TGAGCAAAAAAAAAAAAAAAAAGAAAAGATTCGAAGATCTATGAAAAATT Smik.....: tttcttgaatacacctatgaggatgctcttgaaacaagggcttcgggaaagaggcgccccaggcaaaaagtgagcaaaa-------aaaaaagaaaagattcgaagatctatgaaaaaat Sbay.....: tttctcgaataagcctacaaggattttcttgaaacaagggcttcgggaaagaggcgccccaagcaaaag-tgagcaaaa--------aaaaagaaaagattcgaagatctatgaaaaatt consensus: ***** ***** **** ***** *** **** *********************** ** ****** ********* ******************************* * known....: ======================================================================================================================== 2760~2880: Scer.....: TATGCAGATTCGTTGAGAGTTATAAGGATTTTACTCTTTATGGTTATAGGTTTCATTCTAAAATCAAGCATAAATTTTGTGTTTTGTCTTCCTCTTTTCCTGTCCTCTTTTTTTGCCATC Smik.....: tatgcagattcgttgagagttataaggattttactctttatggctataggtttcatttcaaaatcaagcataaattttgtactttgtcttcctcttttcttatcctcattttt-gccatt Sbay.....: tatgcagattcgttgagagttataaggatt--actctttatggttatacctttcatttggaaatcaagcataaattttgtgctctgtctttctcttctcctgtcttcttttt-----gtt consensus: ****************************** *********** **** ******* ******************** * ****** ***** ** * ** ** **** * known....: ======================================================================================================================== 2880~3000: Scer.....: CTCTGTCGCCATTGAAGTCGAACTTTATAGATAGATTTACTCTTGATTCTCACG-CATCTCAGGCCACCTGGACACTGTACATGGTTGTGATTGTTCTCTTTCTCAGTTATCGAAATTGA Smik.....: ctctgttgcgattgaagtcgaagtttacagatagatctactcttggctctcacatcatttcaagcaacctgaactctgtacatggttgtgattgttctcattttcagttattgtaattga Sbay.....: ccctgtagccattgataccaaagatt-taaatacgtttattcttgattttcatatcatctcaagcaacctggccactgtacatggttgtgattgt-ctcattttcagttataaaacttga consensus: * **** ** ***** * ** ** * *** * ** ***** * *** *** *** ** ***** * ******************** *** ** ******** * **** known....: ======================================================================================================================== 3000~3120: Scer.....: TCCTAGGCTTA-TACTCCAAAATCGGCTCTGCACACGCCTTATTTTT-------GTGGTTTCACTTTACTAACACAACATTCTTTTATTCAATCAGATCAATAACGAACCATTTCCATCT Smik.....: tcctaggcttactaccccaaaatcggttctacacatacgttattttt-------acagttacgctttactaacacaacgttctttattttcatcagatcaataacgaaccttatccatcc Sbay.....: tcctaggcttattactccaaaatcgtttctacatatacctttttttctcttttagtgaatctgctgtactaacacaccattctttcatttaaccagatcaataacgaacctttcccaacc consensus: *********** *** ********* *** ** * * ** **** * ** ********** * ****** ** * ***************** * *** * Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==============================================================================================>= 3120~3240: Scer.....: GCCGACTCAGCATCGATTTTAACTACGTCTACATCAAATAACTCCTTAATGTCTTACAATCATCAGCCTCAACTATCTATTAACTCCGTCCAATCACTCTTGGAGCCCGTGACCCCTCCG Smik.....: gccgactcagcttcgattttaactacgtctacatctaataactccttaATGTCTTACAATCACCAACCTCAACTATCTATTAACTCTGTTCAATCACTCTTGGAGCCGGTGACACCTCCG Sbay.....: gccgactccgcttcgattttaactacgtctacatcaaataactccttaATGTCTTACAATCACCAGCCTCAACTGTCCATTAACTCGGTTCAATCACTCTTGGAGCCCGTGACCCCTCCG consensus: ******** ** *********************** ************************** ** ******** ** ******** ** ***************** ***** ****** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 3240~3360: Scer.....: CCTTTGGGCCAGATGAATAACAAAAGAAACCATCAAAAGGCTCATTCGCTTGATCTCTCTGGTTTTAATCAGTTCATATCATCGACACAATCTCCCTTGGCTTTGATGAATAATA---CA Smik.....: CCTTTAGGCCAGATGAACAACAAGAGGAACCACCAGAAGGCTCATTCGCTTGATCTCTCCGGTTTTAATCAGTTCATATCATCTACACAATCTCCCCTGACTTTGATGAACAATA---TA Sbay.....: CCCTTGGGCCAGATGAACAACAAAAGAAATCATCAGAAGGCTCATTCGCTTGATCTCTCTGGTTTCAATCAGTTCATATCATCTACCCAATCTCCCTTGGGCTTGATGAATAATAACCCA consensus: ** ** *********** ***** ** ** ** ** *********************** ***** ***************** ** ********* ** ******** **** * 3360~3480: Scer.....: TCAACATCGAATTCTGCTAACTCTTTTTCCCCGAATCCTAATGCTGCTAGCAACTCCACTGGGCTTTCAGCCTCAATGGCAAATCCTCCAGCCATTCTACCATTAATCAATGAGTTTGAT Smik.....: TCAACTTCGAACCCTGCTAATGCATTTTCTCCCAATTCCAACGCTGCTAATAACTCCACCGGTCTTCCAAATTCAATGGCAAATCCCCCAGCGATTCTTCCATTAATTAATGAGTTTGAT Sbay.....: TCAACGTCAAACTCTGCCAACGCATTTTCTCCAAACCCTAATATTCCTAGTAATGCCGCTGGTCTTTCATCTGCCATGCCAAATCCGCCTGCCATTATTCCATTGATTAACGAATTTGAT consensus: ***** ** ** **** ** * ***** ** ** * ** * *** ** ** * ** *** ** * *** ******* ** ** *** * ***** ** ** ** ****** Scer_spli: BBBBBBB 3480~3600: Scer.....: CTGGAAATGGATGGTCCCAGGAGAAAATCAAGCCACGATTTCACGGTTGTTGCTCCTTCGAACTCTGGTGTCAATACCTCCAGTTTAATTATGGAAACACCATCCTCTTCAGTGACTCCT Smik.....: CTGGATATGGATGGTTCCAAAAGAAAATTAAGCAATGATTTCACAGCGGTTGCCGCTACGAACTCTGGTGTTAACACTT------------TGGAAACTTCATCCTCTTCAGTGACACCT Sbay.....: CTGGATATAGATGGATCCAAAAGAAAGTTGAGCAATGATTTCGCCGGGACAGCCGCTACCAACACTGGTCCCAATACTTCAAGCCTAACTATGGAAACACCATCCTCTTCAGTAACTCCT consensus: ***** ** ***** *** ***** * *** * ****** * * ** ** * *** ***** ** ** * ******* ************* ** *** 3600~3720: Scer.....: GCTGCATCTCTCAGAAATTTTAGCAATAGTAATAATGCTGCTTCCAAATGTGGAGTGGATAATTCGTCATTTGGTTTGAGTAGCTCAACGTCTTCATCTATGGTCGAAATCAGCGCACTA Smik.....: GCTGCATCTCTCAGAAATTTCAGTAACAATAATAATGCTGCCTCTAAATGTGGGGCAGATAATTCTTCTTTTGGTTTAAGTAGCTCTACATCTTCATCTATGGTGGAAATCAGCGCACTA Sbay.....: GCAGCATCCCTAAGAAATTATAGCAACA---ATAACGCTGCTTCCAAATCTGGGGGCGATAACTCATCGTTTGGGCTGAGCAGCTCTACGTCTTCATCAATGGTCGAAATTAGTGGACTG consensus: ** ***** ** ******* ** ** * **** ***** ** **** *** * ***** ** ** ***** * ** ***** ** ******** ***** ***** ** * *** 3720~3840: Scer.....: CCCCTTAGAGATCTGGATTATATCAAACTTGCCACTGACCAGTTTGGCTGCCGTTTTCTTCAAAAAAAATTAGAAACCCCCAGTGAATCCAATATGGTGAGAGACTTGATGTATGAACAA Smik.....: CCCCTTAGAGATTTGGATTATATCAAACTGGCCACTGATCAATTTGGTTGCCGTTTCCTTCAAAAAAAATTGGAAACACCCAGTGAATCTAACCTGGTAAGAGACTTGATGTATGAGCAA Sbay.....: CCCCTTAGAGATTTGGATTATATCAAACTTGCCACCGATCAATTTGGTTGTCGCTTCCTACAGAAAAAACTGGAAACCCCCAGTGAATCTAATATGGTGAGAGATTTAATGTACGAACAA consensus: ************ **************** ***** ** ** ***** ** ** ** ** ** ****** * ***** *********** ** **** ***** ** ***** ** *** Scer_spli: DDDDDD Smik_spli: DDDDDD 3840~3960: Scer.....: ATTAAGCCATTTTTCTTGGACCTTATTTTGGATCCGTTCGGTAACTATTTGGTTCAAAAACTATGCGATTATTTAACTGCCGAGCAAAAGACATTATTAATACAAACAATATATCCAAAT Smik.....: ATTAAGCCCTTTTTCTTGGATCTTATTTTGGATCCATTCGGTAACTATTTGGTTCAAAAGTTATGCGATTATTTAACTGCTGAACAAAAGACATTGTTAATACAGACAATATATCCAAAT Sbay.....: ATCAAACCATTTTTCTTGGACCTTATTCTGGATCCATTCGGCAATTATCTAGTCCAAAAGCTATGCGATTACCTAACTTCTGAACAAAAGACATTATTAATACAGACGATTTATCCCAAC consensus: ** ** ** *********** ****** ******* ***** ** *** * ** ***** ********** ***** * ** *********** ******** ** ** ***** ** 3960~4080: Scer.....: GTTTTCCAAATATCAATCAATCAGTACGGAACTCGTTCCTTACAGAAAATTATAGACACTGTCGATAACGAAGTTCAAATCGATCTCATTATTAAGGGATTTTCCCAAGAATTTACTTCG Smik.....: GTTTTCCAAATATCCATCAATCAATACGGGACCCGTTCCTTACAGAAAATTATAGATACCGTCGATAATGAAGTTCAAATCGATCTCATTATTAAGGGGTTTTCCCAGGAGTTTACTTCA Sbay.....: GTTTTTCAAATCTCTATTAATCAGTACGGAACTCGTTCTTTACAGAAAATTATAGACACTGTCGACAATGAAGTTCAAATCGATCTTATTATCAAGGGATTTTCTCAAGAATTTACTTCT consensus: ***** ***** ** ** ***** ***** ** ***** ***************** ** ***** ** ***************** ***** ***** ***** ** ** ******** 4080~4200: Scer.....: ATTGAGCAAGTGGTTACTTTGATAAACGATCTTAATGGTAACCATGTGATTCAAAAGTGTATTTTCAAATTCTCGCCATCAAAATTTGGTTTCATCATAGATGCTATTGTAGAACAAAAT Smik.....: ATTGAACAGGTGGTTACTTTGATAAACGATTTGAATGGTAACCATGTGATTCAGAAATGTATTTTTAAATTCTCGCCATCAAAATTTGGTTTTATCATAGATGCTATTGTAGAACAAAAT Sbay.....: ATTGAACAAGTAGTCACCTTAATAAACGATTTGAATGGTAACCATGTGATTCAAAAATGTATTTTTAAATTTTCACCATCAAAATTCGGTTTTATTATCGATGCCATTGTGGAGCAAAAC consensus: ***** ** ** ** ** ** ********* * ******************** ** ******** ***** ** *********** ***** ** ** ***** ***** ** ***** 4200~4320: Scer.....: AATATCATTACCATTTCTACCCATAAACATGGTTGTTGCGTACTACAAAAATTACTAAGCGTTTGTACTCTACAACAAATTTTCAAAATTTCTGTGAAAATTGTGCAGTTCCTTCCTGGA Smik.....: AACATCATTACTATATCTACTCATAAACACGGTTGTTGTGTACTACAAAAATTGTTAAGCGTTTGTACTTTACAGCAGATTTTTAAGATTTCGGTGAAAATTGTGCAATTCTTACCAGGA Sbay.....: AACATTATCACCATTTCCACTCATAAACATGGTTGTTGTGTATTACAAAAATTGTTAAGCGTTTGCACTTTACAACAGATTTTCAAGATTTCCGTAAAAATCGTGCAATTCTTACCAGGA consensus: ** ** ** ** ** ** ** ******** ******** *** ********** ********** *** **** ** ***** ** ***** ** ***** ***** *** * ** *** 4320~4440: Scer.....: TTAATCAACGATCAGTTCGGTAATTATATCATCCAATTTCTGTTAGATATCAAAGAATTGGACTTTTACTTATTGGCTGAGTTATTTAACCGTTTATCCAATGAATTATGTCAACTATCT Smik.....: TTAATAAATGATCAATTCGGTAACTATATCATCCAATTCTTATTAGATATCAATGAACTGGACTTTTATTTGCTTGCAGAATTATTCAATCGTTTGTCCAATGAGTTATGCCAATTATCT Sbay.....: TTAATCAATGATCAATTCGGCAACTACATCATTCAATTCTTATTAGATATCAAAGAATTAGATTTCTATTTATTGGCCGAATTGTTCAATCGTTTATCCAACGAATTATGTCAACTATCA consensus: ***** ** ***** ***** ** ** ***** ***** * *********** *** * ** ** ** ** * ** ** ** ** ** ***** ***** ** ***** *** **** 4440~4560: Scer.....: TGTTTGAAGTTCTCCTCAAATGTTGTGGAAAAATTCATTAAAAAATTATTTAGAATCATTACTGGATTTATTGTTAATAACAATGGGGGTGCCTCCCAAAGGACTGCAGTTGCTTCTGAT Smik.....: TGCTTGAAATTCTCCTCTAATGTTGTGGAAAAATTCATTAAGAAACTTTTCAGAATCATCACGGGATTCACTGCTAATAATAATCGAGGAGGCTCACAAAGGACTGCAGTTGCTTCTGAT Sbay.....: TGCTTGAAATTCTCTTCGAATGTTGTAGAAAAATTCATCAAGAAACTATTCAGGATCATTACTGGCTCGATTGTTAATAGCAATCGCGGAAACTCACAAAAGGCTCCAGCAGCCTCTGAT consensus: ** ***** ***** ** ******** *********** ** *** * ** ** ***** ** ** * * ** ***** *** * ** *** **** * ** *** ** ****** 4560~4680: Scer.....: GACGTGATTAATGCTTCTATGAACATTCTTTTGACTACCATTGATATATTCACAGTCAATTTAAATGTGCTAATCAGGGATAATTTTGGTAATTATGCGTTACAAACGCTATTAGACGTT Smik.....: GACGTTATCAATGCTTCTATGAACATTCTTTTGACGACTATTGATATATTTACTGTCAACTTGAATGTTTTAATCAGAGATAATTTCGGTAATTATGCATTACAAACGCTATTGGATGTT Sbay.....: GACGTCATCAACGCTTCCATGAATATACTTTTGACAACTATTGATATCTTCACCGTCAATTTAAACGTTTTGATAAGAGACAATTTTGGTAATTATGCACTACAAACACTTTTGGACGTT consensus: ***** ** ** ***** ***** ** ******** ** ******** ** ** ***** ** ** ** * ** ** ** ***** *********** ******* ** ** ** *** 4680~4800: Scer.....: AAGAATTATTCTCCTCTGCTTGCTTACAACAAAAATAGTAACGCAATTGGGCAAAACAGCTCTAGTACATTGAATTACGGTAACTTTTGTAACGATTTTTCATTGAAAATTGGTAACTTG Smik.....: AAAAACTATGCTCCTTTGCTTACTTACAACAAAAATGGCAACAAAAATGTGAAAAATATGTCTACTACATTAAATTATGGTAATTTTTGTAACGATTTTTCACTGAAAATTGGTAACTTG Sbay.....: AAGAACTATTCGCCATTGCTTTTTTACAACAAGAGTGGTAACACAAATGGGCCAAATATGTCTAGTACACTGAATTATGGTAATTTCTGTACCGATTTCTCATTGAAAATCGGCAACCTA consensus: ** ** *** * ** ***** ********* * * * *** ** ** * *** * **** **** * ***** ***** ** **** ****** *** ******* ** *** * 4800~4920: Scer.....: ATTGTCCTTACAAAAGAATTACTTCCAAGTATTAAAACTACATCCTATGCAAAGAAAATTAAGTTGAAAGTTAAAGCTTATGCAGAAGCCACAGGTATACCATTCACTGACATATCTCCT Smik.....: ATTGTTCTCACCAAAGAGCTACTTCCAACTATTAAAACTACATCGTATGCAAAGAAAATTAAGTTGAAAGTTAAAGCTTATGCAGAAGCTACAGGTATACCATTCACAGAAATATCTCCT Sbay.....: ATTGTTCTCACCAAGGAATTACTTCCAAGTATCAAGACTACATCCTATGCAAAGAAAATAAAGTTGAAAGTGAAAGCTTATGCAGAAACTACGGGCATACCGTTTACTGATATATCTCCC consensus: ***** ** ** ** ** ********* *** ** ******** ************** *********** *************** * ** ** ***** ** ** ** ******** Smik_spli: DDDDDD 4920~5040: Scer.....: CAAGTCACTGCAATGAGTCATAACAATCTTCAAACGATTAACAACGAAAATAAGAACCCCCATAACAAAAATAGTCATAATCATAATCATAATCATAATCATAACCATGCTCACAATAAT Smik.....: CAAGCTAGTACAATGAGTCATAACAATTTGCAAACCATTAACAACGAAAATAAAAACCCAAACAACAAAAATAATCATAACCATAACCATAATCACAAT---------------ACTACT Sbay.....: CAAGCCAGCACAATGAATCACAACAATTTCCAAGCGATAAATAACGAAAACAAGAACCCCAATAGCAAAAATAATCATCACAATAATCATAAT--------------------------- consensus: **** * ****** *** ****** * *** * ** ** ******** ** ***** * * ******** **** * **** ****** Smik_spli: B Sbay_spli: BBBBBBBBBBBBBBBBBBBBBBBBBBBB 5040~5160: Scer.....: AATAACAATAATAATCAAAAGAGTCATACCCGTCATTTTTCTTTACCAGCTAATGCTTACCATAGAAGAAGTAACAGCTCTGTAACCAATAATTTCTCAAACCAATATGCACAAGATCAG Smik.....: ACTAATAATAATAACCAAAAGAGCCATACCCGTCATTTTTCCTTACCAGCTAATGCTTATCATAGAAGGAGTAATAGCTCTGTAACTAATAGTTTTTCAAACCAATATGCACAAGATCAT Sbay.....: ------ACTAATAATCAAAAGAGTCATACCCGCCATTTCTCTTTGCCAGCTAATTCTTTTCATAGAAGGAGTAACAGCTCTGTAACCAACAATTTTCCAAACCAATATACACCAGATCAA consensus: * ****** ******** ******** ***** ** ** ********* *** ******** ***** *********** ** * *** *********** *** ****** Smik_spli: BBBBBB Sbay_spli: BBBBBBBBBBBB 5160~5280: Scer.....: AAAATTCACTCTCCGCAACAAATTATGAACTTCAACCAAAACGCATATCCCTCGATGGGAGCACCTTCTTTCAATTCTCAAACTAACCCACCATTGGTAAGCCATAACTCGTTACAAAAC Smik.....: AAAACTCATTCTCCACAACAAATTATGAACTTCAACCCAAACGCATATCCCTCGATGGGAGCAACTTCTTTCAATTCTCAAACTAACCCACCGTTAGTTAGCCATAATTCATTACAAAAC Sbay.....: AAAATCCATCCTCCACAACAAGTTATGAACTTCAACCAAAACGCATACCCCTCAATGGGAGCTCCATCTTTCAACTCTCAACCCAACCCACCATTGGTTAGTCATAATTCATTACAAAAT consensus: **** ** **** ****** *************** ********* ***** ******** * ******** ****** * ******** ** ** ** ***** ** ******** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 5280~5400: Scer.....: TTCGACAACCGCCAGTTTGCAAATTTAATGGCACATCCTAATTCTGCTGCACCAATCCATTCGTTCTCATCATCTAACATTACCAATGTGAATCCTAATGTTTCAAGGGGATTTAAGCAG Smik.....: TTCGATAATCGTCAATTTGCAAATTTAATGGCAAATCCAAATTCCACTGTACCAATTCATTCACTCTCATCATCTAACATAACAAACTCAAATCCTCCTGTTTCAAGAGGATTCAAGCAA Sbay.....: TTTGACAACCGCCAATTCGCAAATTTGATGGCGCAACCAAATCCTACTGTCCCAATGCATTCATTCTCATCATCCAACATTGCTAACTCCAATGCTTCTGTTC---AAGGTTTTGAGCAA consensus: ** ** ** ** ** ** ******** ***** * ** *** * *** ***** ***** ********** ***** * ** *** ** **** ** ** **** Sbay_spli: BBBBBBB 5400~5520: Scer.....: CCTGGATTTATGATGAATGA------------------AACCGACAAAATTAATGCTAATCACTTCTCGCCATACTCTAATGCAAATAGTCAAAACTTCAATGAATCTTTTGTGCCTCGT Smik.....: CCTGCTTTCACGATGAATGA------------------GACTGACAGGATCAGTGCCAAGCACTTCTCCCCATATTCTAATGCAAATAGTCAAACCTTCAACGAATCATTTGTGCCCCGT Sbay.....: TCCGGATTTACGATGAATGATGTTTCAAAACCTATTGAAACAGACAAGAACAATGCTAACCAATTCTTGCAGTATTCTAATGTTAATAACCAAAAATTTAACGAAACATTTGTGCCAAGA consensus: * * ** * ********* ** **** * * *** ** ** **** * ** ******* **** **** ** ** *** * ******** * Scer_spli: DD Smik_spli: DD Sbay_spli: BBBBBBB 5520~5640: Scer.....: ATGCAATATCAAACGGAAGGTGCAAACTGGGATTCAAGTTTGTCAATGAAGTCGCAGCATATTGGTCAAGGCCCATATAATCAAGTTAATATGAGCCGCAACGCTAGTATTTCCAATATG Smik.....: ATGCCATACCAAACGGAAAACACTAACTGGGATACTAATGTGTCAACAAAGTCGCAGCACATTGGCCAAGGCCCATACAGCCAAATTAGTACGAGTCGCAACGTTAGTGTTTCCAATATC Sbay.....: ATGCCATACCAATCTGAAACAGCCAACTGGGATTCGAATATATTGATAAAGTCCCAGCACATTGGCCAAGGCCCATATAATGAGAATAGTTTGAGTCGTAACGCTAGCGTTTCCAATATG consensus: **** *** *** * *** * ********* * * * * * * ***** ***** ***** *********** * * ** * *** ** **** *** ********** Scer_spli: DDDD Smik_spli: DDDD BBBBBBB BBBBBBB 5640~5760: Scer.....: CCTGCCATGAATACCGCTAGAACATCTGATGAACTTCAATTCACTTTGCCATAAtacttttttttctttctttttctttccttcttactgtacaaatatttt---------acgcagaaa Smik.....: CCAGTCATGAATATCGCTAGAACATCTGAAGAACTTCAATTCACTCTACCATGAtactttttcttcttttatcttcttttttctttattttttctttatttttcctcccccatactgtgc Sbay.....: CCACCTATGAATACCGGTAGAAGACCAGACGAACTTCAATTCACTTTACCATGAtaccttttttt------------tacttccctactgtacaaatatttttta-cgcagaaaatatga consensus: ** ******* ** ***** * * ** *************** * **** **** **** ** * * ** * * ****** * 5760~5880: Scer.....: tcaaagacaaaagaaaaataaaaaataaaaaataaaaaattcaactaagcaatgacgtcctactaaagtcccaaaatt----tgagccggaaaaaaatggtaaagcaaactattgccatc Smik.....: caatatgatacgcagaaatcaaaagtgaaata-gaaaaattcgactgagcaatgtggtttgatgaaggccggagaaat----tgagccggaag-----ggttaagcaattcattgccata Sbay.....: tttcaaaaaaattaataat-aataataaaaag-gtaaaattcgac-gaacaatgatgtcgaatttaagtctaaaaaaaaaaatgagccagaaa-----ggtcgagcaatctattgccaca consensus: * * * *** ** * * *** ******* ** * ***** ** * * * * * ** ****** *** *** ***** ******* 5880~6000: Scer.....: tttatattttgtattctgtttccgaacacgtatccaaaatcctcccactgcctttgcagggttagcattgctccctaccaaaatgatctaatttttttttgaatcgttttttgtcaacga Smik.....: cctttgttttgtattttatc-ccgagaacatatcccatatacctc---tgcccatgcgcgcttagcattgctccctatcaagatgtttatttttcctgctgaatcgttttt-atcgacga Sbay.....: tttacgatttgtattctaatcccgaaaacgtatcttaaaattcc-----accc------------ccccccccccccccctgcggactaagcattgctccgaactaa--------gatga consensus: * ******** * **** ** **** * * ** * * *** * * * *** * ** 6000~6120: Scer.....: ttatttttgttttaaattcctcatcttctgaacttacgcccaactattatttaattcattcattcattaagcaatccatacgtccattcattcattcagttttctttttg--------tc Smik.....: t-atttctgttttaacttcttcgtttacc-aacttacacccaactattattttattcattcattcatcaaataattcat--------tcattcattcagttt-ctttttg--------tc Sbay.....: t--tttttgttttgacttcatcgttttca-aacttacgcccaactgttatgtcattcattcattcattcattaatcaaacaattcattcattcatttaattttttttttgccaaatcatc consensus: * *** ****** * *** ** * * * ******* ******* **** * ************** * *** * ********* * *** ****** ** 6120~6240: Scer.....: tattactgtcattttattttcaaatccaattgtcctttaggacactaatgtgttaaaatatccattcgctcaagcatttttaataaataggaaaataccgtttgtttttctttgtcattt Smik.....: tattactgtcattttctttttaaattcaaattgtcattaggacaataatgtgttaaaatatccattcgctcaagcatctttaatatataggaaaataccgtttgtttttctttgtcattt Sbay.....: tattactgtcatctctttttacatcccagttgtctttgaaggcaacaatgtgttaaaatatccattcgctcaagcatcttcaccaaataggaaaataccttttgtttttctttgtcattt consensus: ************ * **** * ** * * * * ** ******************************* ** * * ************* ******************** 6240~6360: Scer.....: -gtataaatttttctactggttcctgtcttggttggctttattatatttaggtttaacttgtactaacaatgatacatatttgtatattttattataatatcatatctaactatatctaa Smik.....: tgtataaaatcttatactggtttcggt-ttggttggctttattatacttaggtttaacttgtactaacaatgatacatatttgtatattttattataatctcatatctatctatatctac Sbay.....: -gtataa-tttttttactggttcctgt-tttgttggctttattatacttaggttcaccctgtacttacaatgatacatatttgtatattttattttaatttcacatctatctatattta- consensus: ****** * ** ******** * ** ** *************** ******* * * ****** **************************** **** *** ***** ****** ** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 6360~6480: Scer.....: aatcgttgaactattcagaatggaattgtacaccaagaagaattatgctataacacca--------taa-ggtcattacatttg---ggttttgactgctaattagt--tcgaagtcggc Smik.....: agccattaagttattttttgcgtagtatcac-cgaaaaaccaagacttcgtaacacaggtgttctttcg-agctgttacatataccaaactattatggtgctttgacgataaaaaaagaa Sbay.....: aactgccgagttatcctcaaaggaggggggggggaggggttattaattcgaagagctattatttttcaacggaaaatgcatttgacgattacacaaatcacattcacctctaaagcc--- consensus: * * *** * * * * * * * * * *** * * ** ** 6480~6582: Scer.....: gttaaaattta-----aagaatatttatacatatgaatatgtatatgaatgcaa-agtatgcta-a--aatatttataaagcaaaaatctcggtgggctaaa Smik.....: gttaaggttggtgtccaataatccaaagaatcatatattgatgtatcaatgcaataatatatta-atgaatatttataaag----aatcgcagctagataaa Sbay.....: -ctcaaatt-------aaaactatcagtacttttacaaaatcttat-aatgcatatatatattatactagtatatactggacaagaatcaccattaaatagg consensus: * * ** ** * * * * * *** ****** *** ** * * *** ** **** * ** Scer_spli: DDDDDD { alias......: ['OST5'] chromosome.: 7 description: 9.5-kDa zeta subunit of oligosaccharyltransferase complex end........: 73156 exons......: [(1, 21), (171, 410)] gene.......: OST5 introns....: [(22, 170)] length.....: 410 name.......: YGL226C-A plength....: 136 start......: 72747 tdist......: 72747 type.......: ORF up.........: 0 } Scer: 1 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 202)] ] [ ->[('Scer', 299)] ] 0~120: Scer.....: cttctgccttatttctacctatgttgaaatgatatcttttgggtggtcttctcttttctttgacgcgaaatttgaaattgcaaatacttttcgaagaaggatgcaagtacacataaaacg consensus: ************************************************************************************************************************ 120~240: Scer.....: tatactgtaaataggcaaaacataagcagtgagagatatccctgcatattcaaggtttacaATGACTTATGAACAATTATACGTACGTTGCCTGTAACGCTGGTTGATGCTATTCTTTTG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >===================================== 240~360: Scer.....: ATGTTTTTAACAACACACAGGACAATGAATAGTTCCCTTCCTGTTTTCTAATTCATAATTACTAACAAGTATAGCCAATTCGCCTTCTCGGCATTTGTGTAATCACTTAAGAAAGAGTTC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: =============================================================================================================>= 360~480: Scer.....: CATTCCTCAAAGAGCTTCCAGCCATTTATCCACTTAGACACTCAACCAAAATTTGCAATTTGTGGTTTAATCGTTACATTAGCTGTATTATCATCTGCCCTGTTCGCCGTCGGTTCTAAA consensus: ************************************************************************************************************************ 480~600: Scer.....: TCTTCATACATTAAGAAACTCTTCTTCTACACAATTTTAAGTGTAATTGGCAGCTTGTTTGCTGGCTTGACCACTGTTTTTGCTTCGAATTCTTTCGGTGTCTACGTCTAGtggctcttc consensus: ************************************************************************************************************************ 600~720: Scer.....: gttggcctataaaggaattatcgatgaattatatactatacttaagaagtattttggatgagaatattaaaaagaaaggtgtcaagtaaatttcattatataaacggtttaagacatatt consensus: ************************************************************************************************************************ 720~791: Scer.....: aatatgcgatttttgggaagataatgactgatatcacatggctttgttgtttgaaggtgcttgttttatgc consensus: *********************************************************************** { alias......: [] chromosome.: 7 description: Hypothetical ORF end........: 63001 exons......: [(1, 57), (116, 928)] gene.......: introns....: [(58, 115)] length.....: 928 name.......: YGL232W plength....: 309 start......: 62074 tdist......: 62074 type.......: ORF up.........: 1 } Scer: 4 donors and 2 branches Spar: 4 donors and 1 branches Smik: 2 donors and 1 branches Sbay: 4 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 295), ('Spar', 295), ('Smik', 295), ('Sbay', 295)] ->[('Spar', 1062), ('Smik', 1062), ('Sbay', 1062)] ->[('Scer', 33), ('Spar', 33)] ->[('Scer', 384), ('Spar', 384)] ->[('Sbay', 709)] ->[('Sbay', 1204)] ->[('Scer', 660)] ] [ ->[('Scer', 331), ('Spar', 331), ('Smik', 331), ('Sbay', 331)] ->[('Sbay', 949)] ->[('Scer', 780)] ] 0~120: Scer.....: --aaaattagatattatctcagtataatcatttgtacgttcataagaaa-gaatttcggacagtcttga--------gttttttggttttagcatcgaaaaagttcacttcaaataaatt Spar.....: --aaatttagatattatctcagtataatcatttgtacgtatatagaaaa-gaacttcggacagtcttga--------gttttttgattttagtatcgaaaaagttcaattcacataaaaa Smik.....: --agactcgtatata---tcagtgttatcatttatacgtacatagaaa---aacttcggacagtcttaa--------ctttttt------------------------------------ Sbay.....: tgtttctgaaacatcatttaagtataatcgtttgtacgcatatagaaaaagaatttaggatattcttaaaaggacaagttttttagttttattacaaaaaaagtttattccag--aaatt consensus: * * ** * *** * *** *** **** *** ** ** ** *** * **** * ****** Scer_spli: DDDDDD Spar_spli: DDDDDD 120~240: Scer.....: ttttttttatcattgaataactctttattttt-cacgtcaacc-aaata---catctcaaaa-gtctactatatattgaaaa-gtatcatacaattagtgtaaataagtatcttaattAT Spar.....: ttttcctcaccattgaatacctcttttttttttcacatctact-aaataga-cacctcaaaa-gtctaccatttattgaaaaagtatcatataatcactgtaaagaaataccgcagtcat Smik.....: -ttttcatttgaatgaatg---ctttttttccttgcatctattgaaatggg-catcacaaaaagttaatctttcgttagaaatataccataaaatcatcataaagaagccacacaggcat Sbay.....: attttttttttacttcagg-------atttttttgcatccattaaagaagatcatcttaaaaagccagtgtttcattgaaaagatactctacaa--attataaaaaagtaacgcagccat consensus: *** * * * *** * ** * ** ** * **** * * ** *** ** ** ** * **** ** * * ** 240~360: total....: ====== ======= Scer.....: GGGTGAAAAACGTAACCGTAATGGTAAGGATGCAAATTCCCAAAACAGGAAGAAAGTATGTCTGTCTGCACACGAATTAGAGTTCTTTAAGTACTAACGATCAAAAGTAATAGTTTAAAG Spar.....: gggtgaaaaacgtaatcgtaataatgggaatgcagattcccaaaagaggaagaaagtatgtctttttgcacacgaaccatagttctttaagtactaacaattaaa-gcgatagtttaaag Smik.....: gagtgagaaacgtaactgcaatagtgggattgcaaattctcaaaagaggaagaaagtatgtctgttaatacatgagtcataggcctttacatactaactatcaaa-gcaatagttcaaag Sbay.....: gggtgaaaaacgtaatcgtgatagtgggaatgcaaattctcaaaagaagaaaaaggtatgttaattttcatttgaatcatagtcttccaaatactaacaaccaaa--caatagtttaaag consensus: * **** ******** * ** * * **** **** ***** * *** ** ****** * * ** * ** * * ******* * *** ****** **** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >=======================================================>= 360~480: Scer.....: TATCTTCCGGATTCTTAGACCCTGGTACGTCTGGAATATATGCCACATGTTCTAGAAGACATGAACGTCAAGCAGCCCAAGAGTTGCAGCTTTTATTCGAAGAAAAATTTCAAGAACTCT Spar.....: tatcttccgggttcttagatcctggtacgtctggaatatatgctacatgctctagaagacatgaacgccaggccgctcaagagttacagcttttatttgaagaaaagtttcaagaactct Smik.....: tatcttctggattcttagatcctggtacatctggagtatatgccacatgctctagaagacatgaacgtcaggctgctcaagagttgcagcttctatttgaagaaaagtttttagaacttt Sbay.....: tatctactggattcttagatcctggtacatccgggatatatgctacatgttctagaagacatgaacgtcaagctgctcaagaattacagcttttatttgaggagaagttacaagaactgt consensus: ***** * ** ******** ******** ** ** ******* ***** ***************** ** ** ** ***** ** ****** **** ** ** ** ** ****** * Scer_spli: DDDDDD Spar_spli: DDDDDD 480~600: Scer.....: ATGGGGATATCAAAGAAGGAGAAGATGAAAGTGAAAATGACGAAAAGA---A---AGATCTATCAATTGAAGACCAGATAAAAAAGGAATTACAAGAATTGAAAGGTGAAGAAACAGGCA Spar.....: atggagatatcaaggatggagaagaggaaagtgaaaacgacgaaaagg---atgaagatctatcaattgaagaccagataaaaaaggaattacaagaaatcaaaggtgaagactcaagta Smik.....: atggggacatcaaggatgaagaagatgagaatgaaaacgacaaaaagg---aagaagaactatcaattgaagaccaaattaaaaaggaactacaagaaatcaagggcgaagagttcagca Sbay.....: acggagacatcgatgatgacgaaaatggaagtgatgacgacaataagggagaggaagagctgtcaattgaagaccaaatcaaaaaagaactacaagaactaaagggtgaagattcaaaca consensus: * ** ** *** * ** * *** * * * *** * *** * *** * *** ** ************** ** ***** *** ******** * ** ** ***** * 600~720: Scer.....: AAGATTTATCTTCAGGGGAGACAAAGAAGAAAGACCCCTTAGCCTTCATCGACTTGAACTGTGAGTGCGTGACATTTTGTAAAACAAGAAAGCCAATTGTTCCCGAAGAATTTGTGCTAA Spar.....: aagattcgccttctggagaaacaaagaaaaaagaccccttggcctttatagatttgaactgtgaatgtgtgacattttgtaaaacaagaaagccaattgttccggaagaatttgtgctaa Smik.....: aacattcatctacaggagaaacaaagaaaaaggacctcataacattcatagatttgaactgtgaatgtgtgacattttgtaaaacaagaaggccaattgttcctgaagaatttgtactaa Sbay.....: aggattcaacttcaggagagacaaagaagaaagaccctttgacttttatagatctgaattgtgaatgtgtgaccttctgtaagactagaaaaccaattgtccctgaagagttcgtgctaa consensus: * *** ** * ** ** ******** ** **** * * ** ** ** **** ***** ** ***** ** ***** ** **** ******** ** ***** ** ** **** Scer_spli: DDDDDD Sbay_spli: DDDDDD 720~840: Scer.....: GTATCATGAAAGACTTAGCGGATCCCAAAAATATGGTTAAACGTACTAGATATGTTCAGAAATTAACACCTATTACGTACTCTTGTAATGCAAAAATGGAGCAATTAATCAAGTTGGCCA Spar.....: gtatcATGAAAGACTTAGCACATCCTAAAAATATGGTTAAACGTACTAGATATGTTCAGAAGTTGACACCAATTACGTATTCTTGTAATGCGAAAATGGAACAACTAATCAAATTGGCCA Smik.....: gtatcATGGAAGATTTAGCTGATCCCAAAAATATGGTTAAACGTACTAGATATGTTCAAAAATTGACCCCAATTACGTATTCTTGTAACGCAAAAATGGAACAACTTATCAAATTGGCCA Sbay.....: gcatcATGAAGGATCTGGCAGATCCCAAAAATATGGTTAAGCGTACTAGATATGTTCAAAAGTTGACCCCGATTACGTATTCCTGTAACGCAAAGATGGAGCAATTGATCAAACTAGCTA consensus: * ****** * ** * ** **** ************** ***************** ** ** ** ** ******** ** ***** ** ** ***** *** * ***** * ** * Scer_spli: BBBBBBB 840~960: Scer.....: ATTTGGTTATTGGGCCACACTTTCATGACCCTTCGAATGTTAAAAAAAATTATAAATTTGCTGTAGAAGTGACAAGAAGAAATTTCAATACGATTGAAAGAATGGACATCATTAATCAAG Spar.....: ATTTAGTTATTGGGCCACACTTTCATGAACCTTCAAAAGTTAAAAAAGACTACAAATTTGCTGTAGAAGTAACAAGAAGAAATTTCAATACAATCGAAAGAATGGACATCATTAACCAAG Smik.....: ATTTGGTTATTGGGCCACACTTTCATGACCCATTAAAAGTTAAAAAAGATTACAAGTTTGCCGTAGAAGTGACAAGGAGAAATTTCAATACAATTGAAAGAATGGATATTATCAATGAGA Sbay.....: ATTTGGTCATCGGACCACACTTCCATGATCCTTCCAAAGTGAAAAAAGATTTAAAATTTGCTGTAGAAGTAACAAGAAGAAACTTCAATACGATTGAAAGAATGGACATTATTAACCAGG consensus: **** ** ** ** ******** ***** ** * ** ** ****** * * ** ***** ******** ***** ***** ******** ** *********** ** ** ** * Sbay_spli: BBBBBBB 960~1080: Scer.....: TTGTGAAGCTGGTCAATAAAGAGGGTTCTGAGTTTAATCATACTGTGGACTTGAAGAACTATGATAAATTGATTCTAGTGGAATGTTTTAAGAGCAATATCGGAATGTGTGTAGTCGATG Spar.....: TTGTCAAGTTAGTCAATAAAGAAGGTTCTGAGTTTAATCATACTGTAGACTTGAAGAACTATGATAAATTGATTCTAGTGGAATGTTTCAAGAGCAATATCGGCATGTGTGTAGTTGATG Smik.....: TTGTCAAGCTAGTTAATAAAGAAGACTCCGAATTCAACCATACTGTGGACTTGAAGAACTATGATAAACTGATTCTCGTGGAATGTTTCAAGAGCAATATCGGCATGTGTGTGGTGAATG Sbay.....: TTGTCAAGCTCGTCAACAAGGAAGGTTCGGAGTTCAATCATACTGTAGACTTGAAGAACTATGACAAATTAATTCTTGTGGAATGCTTTAAGAGTAATATCGGTATGTGTGTAGTAGATG consensus: **** *** * ** ** ** ** * ** ** ** ** ******** ***************** *** * ***** ******** ** ***** ******** ******** ** *** Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1080~1200: Scer.....: GGGATTATAAAACCAAATATCGTAAATACAACGTTCAACAGCTTTATGAATCGAAATTCCGAAAGGATGAAGATAAGAGTGTAAAACAATAAtcatatatgaaacagaatagatatttt- Spar.....: GGGACTATAAGACCAAATATCGTAAATATAATGTTCAGCAGCTTTATGAATCCAAATTCCAAAAGGATGAGGATAAGAGTGTAAAACAATAGtcacatatgaaaaagtatagatattttt Smik.....: GAGATTATAAGACTAAATATCGGAAATATAATGTTCAGCAACTATATGAGTCCAAATTCAAAAAGGAGAACGATAAAAATGAAAAAAAATAAtcttatacaaaagtgaagattttttgt- Sbay.....: GAGACTATAAGACCAAGTATCGTAAATATAACGTTCAACAGATTTATGAGTCTAAGTTCCAAGAGGATGATGATAAAGATGTAAAATAGaaaagatttgtaaaaaagtacagatatattt consensus: * ** ***** ** ** ***** ***** ** ***** ** * ***** ** ** *** * **** * ***** ** **** * * * *** * * * * * * 1200~1232: Scer.....: atataagtatatacgctc-------------- Spar.....: gtataagtatatacggtc-------------- Smik.....: gtatatatatatatatatatatatgtacgatc Sbay.....: atgtgtatgtatataaagattaacc------- consensus: * * * **** Sbay_spli: DDDDDD { alias......: ['HFM1', 'MER3'] chromosome.: 7 description: C4 zinc finger DNA-binding protein of low sequence specificity in vitro; Probable 119 kD DNA/RNA helicase family member end........: 31636 exons......: [(1, 58), (211, 3716)] gene.......: HFM1 introns....: [(59, 210)] length.....: 3716 name.......: YGL251C plength....: 1238 start......: 27921 tdist......: 27921 type.......: ORF up.........: 0 } Scer: 4 donors and 3 branches Spar: 6 donors and 3 branches Smik: 7 donors and 3 branches Sbay: 4 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 2253), ('Spar', 2253), ('Smik', 2253)] ->[('Scer', 1116), ('Sbay', 1116)] ->[('Scer', 4159), ('Spar', 4159)] ->[('Smik', 2055), ('Sbay', 2055)] ->[('Spar', 2590), ('Sbay', 2590)] ->[('Spar', 3368), ('Sbay', 3368)] ->[('Scer', 1719)] ->[('Smik', 64)] ->[('Smik', 2210)] ->[('Smik', 3805)] ->[('Smik', 3845)] ->[('Smik', 4345)] ->[('Spar', 1351)] ->[('Spar', 3688)] ] [ ->[('Scer', 423), ('Spar', 423), ('Smik', 423), ('Sbay', 423)] ->[('Scer', 1584), ('Spar', 1584)] ->[('Scer', 1408)] ->[('Smik', 1203)] ->[('Smik', 4265)] ->[('Spar', 4091)] ] 0~120: Scer.....: --------------tgataccaacaaaaacaatctttaactacgtatcttttcc-----tttacgtatatataattaatcatat----atacttcccttttttatgccttg--ttgtagt Spar.....: --atttgattccgttgatattca-aaaaacaaccttt---tataggccatgtct-----tctacgtatatattattaatcctgttcagatacttccctattttacgcctta--atgtaat Smik.....: attttgaatttcgtcaatatcacaagtaacacttttattgactatatcttttccaaaagtatatgtatgtataataaatcatattcatgtgtttcccttctttgaaccttggtatataat Sbay.....: ---gtccaatctgtaaatgctaaaagtgtgtagcttctattggctactttattt-----cctattatggtgcatctactcttcttaattcagttccct-ttttaacctttaatatttaga consensus: ** * ** * * ** * * ** * * ****** *** * ** * ** Smik_spli: DDDDDD 120~240: Scer.....: ttta-acatatcatgtaccacgaatggatg-caggctcggcgggtatttagactttgccccggattataaacaaaacgggactattagtatcatctatcaagaaatcctttcattgaaaa Spar.....: ttta-gcatatcacgtaccacgaatacatgttgggctcggcgggtatatagactttgcagcgaattatagacaagaccgggccattaacatga-ctattaagaattctttttattgaaga Smik.....: ttca-ttatatcatgtgtcacgaaaagatgcagagctcggcgggtataga-actttcgcccacattagagacaagact-atttatcatcacgacatattgatagggattcttatggaaga Sbay.....: gacatttagatcatgaaccacgaaaaaatattgagctgggcgggtagatacaatttgccgcccaatgtgaatagga----------ataacaacacattagcagct-tcatcaaaggaat consensus: * * **** * ****** ** *** ******** * * *** * * * * * * * * * ** * * * * * 240~360: Scer.....: tgattgatacctcaaggtggatttgacaactt-aagaggc-gtcg-----taaggATGAAAACAAAGTTTGATCGCCTCGGTACAGGAAAAAGAAGTAGACCCTCTCCAAATAGTAGTAA Spar.....: gggtggatccttcaaggtaaatttagcgatttaaagaggc-gtcg-----caaggatgaaaacgaagtttgactgcatcagtaccgggaaaagaaatagaccctctccaaatagtagtaa Smik.....: tagttgtgttcttaa-tcaaattaagtaatataaagttcc-attgaaagcaaagcatgaaaactaagtttgactgcatcagcacagggaagagaaatagaccctctccaaacagtagtaa Sbay.....: tgat-gtacaatcgaagcaaagttagccgtttcaagagtctatagcgttgcaaggatgaaaacaaagtttgactcaatcagcaccgggaaaagaaataggcatcattcaaacagtagtaa consensus: * * * * * * * *** * * * *** ******** ******** ** * ** ** ** **** *** * * **** ******** known....: >====== 360~480: total....: ======= Scer.....: CGAAGCTTAGCAACACCCTTATCAGTTTACAC-------CATATCGGACAACAACAGTATTTTGACTAACATTGTTACCTCTTTCTTTTATTATCTAGCGGAAATGCAACCAAAAGTGGT Spar.....: cgaagcctaataatacctttttcagttcatacgaaac-gcatatcggac-acagcaatattttgactaacataattacctcattctttttttatctagttggaatgaaaccaaaag--gt Smik.....: cgaagtccaacaacacccttatcagttctttcaaaatgccgtattgggc-attacagttcttttactaacaaaataacctctttattttattatctagcagaggcaaaaccaaaaatggg Sbay.....: cgaagttaaacaacacccttattaatgaattt--aattgtcttttaagcttaagcgatattttgactaacatagtttgccttttatcataccatctagtagggatgaaaccaactgtggg consensus: ***** * ** *** ** * * * * * * * * *** ******* * * ** * * ****** * ****** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 480~600: Scer.....: TTTTCTGGACTAGAATTTCAGAGGAC-TTATAGATATTGACTTTAACGACCAGTCTGCTACATTTAAAAGAAATAAGAAAAATAGCCGCCAACCAAGTTTTAAAGTAGGTTTGTCTTATA Spar.....: tttcctgaactagactttcagaggac-ttatagatatcgatctcaacgaccagtcagctacatttaaaaggaataaaaaaaatagccgccaaccaagctttaaagtgggtttgtcttata Smik.....: ttttctcttctagatttttagagaacaaaatagatatcgatttggtcgtcgaaccagctgcattcaaaaggaacaaaaaaaatagccgccaaccaagtttcaaagtgggtttgtcttata Sbay.....: ttttctcaactaggcctttagaggac-ttatagatatcgattcaaacgacgagtccggcactttaaaaaggaatagaaaaaatagccgccaacccagtttcaaagtaggcttgtctcata consensus: *** ** **** ** **** ** ******** ** ** * * * * * ** ***** ** * ***************** ** ** ***** ** ****** *** known....: ===============================>= 600~720: Scer.....: ACAGTTTACTGGATGATTGTGATGATGAAAATGAAACAGAGGAAATATTTGAGGGCCGTGGTCTGCAATT---------CTTCGACAAAGACGATAATTTTTCAATAACAGCAGATGATA Spar.....: atagtttactggatgattgtgataatgaaaatgacacagaagatatatttgagggtcgtggtccacgatt---------cttcgataacgatgataatttttcattaacagcagatgata Smik.....: acagcttactggatgattgtgataatgaaaatgacactgacgatatatttgagggtcgcggtataaggtt---------cttcgatcacgatgataatttctccataacagaggatgata Sbay.....: acagtttactggatgacagtgacgaaaacgatgactgcaatgatacatttgagggtcgaggtgcccaattatttgatccgttcgatcacgatataaatttctcaataactgcagacgata consensus: * ** *********** **** * * **** * ** * ********* ** *** ** ***** * ** ***** ** **** * ** **** 720~840: Scer.....: CACAAGTAACTAGTAAATTATTTGATCACGATTTAGAGCAGACACCTGATGAAGAGGCGAAGAAACCTAAGAAGGTCACGATAAGGAAATCAGCGAAGAAATGTTTGAGCACGACCATAT Spar.....: cgcaagttactagtaaattatttgatcatgacttagaaaagttaccaagtgaagaggcgaaaaaaccaaagagggtcacggttaggaaattacctaataaatgtttgggtacgaatatct Smik.....: cacaaataaccagtaaattatttgatcatgacttggaacaaataccaaatgaaataccaaagaaacaaaaaagagtaacagttaggaaaacatccaagaaatgtataagcacatccattt Sbay.....: cacagataacgagcaaattattcgacaacgatttggaaccaatacccaacgatATGGCCAAGAAACCAAAGAGGGTTGCAGTTAGGAAGTCCTCCAAGAAATGTTTAAGTACATCCATCT consensus: * ** * ** ** ******** ** * ** ** ** *** ** * ** **** ** * ** * * ***** * ** ****** * * ** ** * 840~960: Scer.....: TACCAGATTCATTCAGAGGGGTTTTTAAATTTACAGAATTTAATAAAATGCAATCAGAGGCTTTTCCTAGTATTTATGAGAGTAACGAGAACTGCATAATTTCTTCACCAACCGGATCAG Spar.....: tgccagattcatttagaggagttttcaaatttacagaatttaataagATGCAATCAGAAGCTTTTCCTAGTATTTACGAAAGTAACGAAAATTGCATCATTTCTTCACCAACCGGATCAG Smik.....: tacctgattcattcagaggggttttcaaatttacagagtttaataagATGCAGTCAGAAGCTTTTCCAAGTATTTATGAAGGTAACGAAAATTGCATCATTTCTTCACCAACAGGATCAG Sbay.....: TACCGGACTCATTTCGGGGTGTCTTTAAATTTACAGAATTCAACAAGATGCAATCGGAAGCATTTCCTAGCATTTATGAAGGCAATGAGAATTGTGTTATTTCTTCACCAACCGGATCGG consensus: * ** ** ***** * ** ** ** *********** ** ** ** ***** ** ** ** ***** ** ***** ** * ** ** ** ** * ************** ***** * 960~1080: Scer.....: GCAAGACTGTATTATTTGAATTGGCAATATTACGTCTTATAAAGGAAACAAATAGTGATACCAATAACACCAAAATTATATACATCGCGCCAACCAAATCTCTATGTTACGAGATGTACA Spar.....: GAAAAACTGTATTATTTGAATTGGCAATCTTACGTCTTATAAAAGAAATGAATAGTGATTCAAATAATACCAAAATTATATATATCGCTCCCACCAAATCTCTATGTTATGAGATGTACA Smik.....: GAAAAACTGTATTATTTGAATTGGCCATATTACGTCTTATAAAGGAGATGAATAGTGACTCTAATAACACCAAAATCATATACATCGCCCCGACAAAATCCTTATGCTATGAGATGTACA Sbay.....: GAAAAACTGTGTTGTTTGAATTGGCGATATTGCGTCTGATTAGAGAAACGAATAGCGACTCCAACAACACTAAAGTCATATATATCGCCCCTACAAAATCCTTATGTTATGAGATGTATA consensus: * ** ***** ** *********** ** ** ***** ** * ** * ***** ** * ** ** ** *** * ***** ***** ** ** ***** **** ** ******** * 1080~1200: Scer.....: AGAACTGGTTTCCTTCCTTTGTGAATCTTTCTGTTGGTATGCTTACTAGTGATACCTCTTTTCTGGAAACTGAAAAGGCTAAAAAATGTAACATAATAATTACGACACCAGAAAAATGGG Spar.....: AGAACTGGATTCCTTCCTTCGTCAATCTTTCTGTCGGCATGCTCACCAGCGATACTTCATTCCTGGAGACAGAAAAGGCTAAAAAATGTAATATAATAATTACGACGCCAGAAAAATGGG Smik.....: AGAACTGGAACCCATGTTTCGTTAATCTTTCTGTCGGCATGCTTACTAGCGATACTTCTTTTCTGGAGACAGAAAAGGCTAAAAAATGTAACATAATCATAACAACACCAGAAAAATGGG Sbay.....: AAAATTGGAACCCGTCTTTTGTTAACCTTTCTGTGGGTATGCTTACTAGTGATACTTCTTTTTTAGAGACCGAGAAAGCTAAGAAATGTAATATAATCATTACCACGCCAGAAAAGTGGG consensus: * ** *** ** * ** ** ** ******** ** ***** ** ** ***** ** ** * ** ** ** ** ***** ******** ***** ** ** ** ******** **** Scer_spli: DDDDDD Sbay_spli: DDDDDD 1200~1320: Scer.....: ATTTGTTAACAAGAAGATGGTCCGATTACAGCCGATTATTCGAATTGGTCAAACTTGTCCTAGTTGATGAGATTCATACCATAAAGGAGAAAAGAGGAGCATCTTTGGAAGTAATTCTGA Spar.....: ATTTGTTAACAAGACGGTGGTCTGATTATAGCCGACTATTTGAATTGGTCAAACTCGTCTTAGTTGATGAGATTCATACTATAAAGGAGAAAAGAGGTGCAACTTTAGAAGTAATTTTGA Smik.....: ATCTGCTAACAAGAAGATGGCTGGATTATAGCCGACTATTTGAATTAGTTAAGCTCGTCCTAGTCGATGAGATTCATACTATAAAAGAAAAAAGAGGAGCAACCTTAGAAGTGATTTTGA Sbay.....: ATTTGTTAACAAGAAGATGGACGGACTATAGCCGACTATTTGAGTTGGTTAAGCTCGTCCTAGTTGATGAAATCCATACTTTAAAGGAAAGAAGAGGTGCAACTTTGGAAGTTATCCTAA consensus: ** ** ******** * *** ** ** ****** **** ** ** ** ** ** *** **** ***** ** ***** **** ** * ****** *** * ** ***** ** * * Smik_spli: BBBBBBB 1320~1440: Scer.....: CAAGGATGAATACAATGTGTCAAAACATTCGGTTTGTTGCTTTAAGTGCAACAGTTCCAAATATAGAAGACCTAGCATTGTGGCTCAAAACTAACAACGAGCTTCCTGCAAATATTCTTT Spar.....: CAAGGATGAATACAATGTGTCAGAACATTAGGTTCGTTGCTCTAAGCGCAACTGTTCCAAATATAGAAGACCTCGCATTGTGGCTCAAAACCAACAACGAGGTTCCTGCAAATATTCTTT Smik.....: CAAGAATGAATACAATGTGTCGGAACATTCGGTTTGTTGCTTTAAGCGCAACTGTCCCGAATATAGAGGACCTAGCTTTATGGCTCAGAACGAACAACGAGCTTCCTGCAAGCATTCTTT Sbay.....: CAAGAATGAATACAATGTGCCGAAACATTCGGTTTGTTGCTTTAAGCGCAACAGTTCCAAATATAGAGGATGTAGCGTTGTGGCTCAAAACAAATAACGAGTTTCCTGCAAACATACTCT consensus: **** ************** * ****** **** ****** **** ***** ** ** ******** ** * ** ** ******* *** ** ****** ********* ** ** * Scer_spli: BBBBBBB Spar_spli: DDDDDD 1440~1560: Scer.....: CTTTTGACGAATCGTACAGGCAAGTTCAGTTAACGAAGTTTGTTTATGGGTACTCCTTCAATTGCAAAAATGACTTCCAAAAAGATGCTATATATAATTCCAAATTGATTGAAATAATTG Spar.....: CTTTCGACGAATCGTACCGACAAGTTCAGTTAACCAAATATGTTTATGGGTACTCCTTCAATTGCAAAAATGATTTTCAAAAAGACGCCATATATAATTCCAAATTGATTGAAATAATCG Smik.....: CTTTTGACGAATCTTACCGACAAGTCCAGTTAACCAAGTTTGTTTACGGATATTCCTTCAATTGCAAAAATGATTTTCAAAAAGATGCCATATACAATTCTAAATTGGGTGAGATCATTG Sbay.....: CCTTTGACGAATCATACCGTCAGGTTCACTTAACGAAATATGTTTACGGATATTCCTTCAACTGCAAGAACGATTTTCAAAAGGATGCCATATACAATTCCAAACTTATCGAACTAATTG consensus: * ** ******** *** * ** ** ** ***** ** * ****** ** ** ******** ***** ** ** ** ***** ** ** ***** ***** *** * ** * ** * 1560~1680: Scer.....: AAAAGCATGCCGATAATCGTCCCGTACTAATATTTTGTCCGACTAGGGCTTCAACTATATCAACAGCAAAATTTTTATTAAATAATCATATTTTTTCAAAA------AGTA---AGAAAA Spar.....: AAAAGCATGCCGACAATCGCCCAGTACTAATATTTTGCCCAACCAGGGCTTCAACCATATCGACGGCAAAATTCTTACTGCATAATCATTTTTCTTCGAAA------AGTA---AGAAAA Smik.....: AAAAACATGCTGATAATCGCTCGGTATTAATATTCTGTCCGACCAGGGCTTCAACGATATCGACAGCCAAATTCTTACTCCATAATCATCTCCCTTCGGGAAGAGGTAGTA---GGAAAG Sbay.....: AAAAGCATGCTGATAGTCGCCCAGTACTTATATTTTGTCCGACTAGGGCTTCTACGGTATCCACAGCAAAATTCTTATTGCAAAACTATGTCGCCTCTAGAAGAAAGAATATCCAAGGAA consensus: **** ***** ** * *** * *** * ***** ** ** ** ******** ** **** ** ** ***** *** * * ** ** * ** * * ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB 1680~1800: Scer.....: GATGTAATCATAATCCCTCCGATAAAATATTAAATGAATGTATGCAACAAGGTATCGCTTTCCATCATGCTGGAATTTCTTTAGAAGACCGTACTGCCGTTGAGAAAGAATTTCTTGCAG Spar.....: GATGTAATTATCATGCCTCTGATAGAATATTAAGCGAATGCATGCAACAAGGCATCGCTTTCCATCATGCTGGAATTTCATTAGAAGACCGTACTGCGGTTGAAAAGGAATTTCTTGCAG Smik.....: AGAGTAATTATTATGCCTCAGATAAAACATTAAGCGAATGCATGCGCGAAGGTATTGCTTTCCATCATGCTGGAATCTCATTGGAAGACCGTAATGCCGTTGAAAAGGAATTTCTAGCAG Sbay.....: GAAATAGTAGTCATGCCTCGGACAAAATATTATACGAATGCATGCAGCAAGGTATTGCCTTCCATCATGCTGGTATTTCATTAGAGGATCGTAGTATTGTTGAAAATGAATTCCTGGCAG consensus: ** * * ** **** ** * ** **** ***** **** **** ** ** ************** ** ** ** ** ** **** * ***** ** ***** ** **** Scer_spli: DDDDDD 1800~1920: Scer.....: GTTCAATTAATATATTGTGTTCAACTTCAACGTTAGCTGTTGGTGTGAACCTTCCCGCATATTTGGTCATTATCAAAGGCACCAAAAGTTGGAACTCTTCTGAAATCCAAGAGTATTCAG Spar.....: GTTCAATAAATATATTGTGTTCAACTTCAACATTAGCAGTTGGCGTGAACCTTCCGGCTTACTTGGTTATTATCAAAGGCACCAAAAGTTGGAACTCTTCTGAAATCCAAGAATATTCAG Smik.....: GTTCAGTAAATATATTATGCTCAACTTCAACATTAGCAGTTGGTGTAAACCTTCCAGCCTATTTGGTTATTATTAAAGGCACAAAAAGTTGGAACTCTTCTGAAATCCAAGAATACTCAG Sbay.....: GCTCAATTAATGTACTATGTTCTACTTCAACTTTAGCAGTTGGCGTAAACCTTCCGGCCTATTTGGTTATTATCAAAGGAACAAAAAGTTGGAACTCATCTGAAATTCAAGAATATTCTG consensus: * *** * *** ** * ** ** ******** ***** ***** ** ******** ** ** ***** ***** ***** ** ************** ******** ***** ** ** * 1920~2040: Scer.....: ACCTAGATGTACTGCAAATGATTGGGCGGGCAGGAAGACCTCAATTTGAAACTCACGGGTGCGCAGTAATCATGACAGACTCTAAAATGAAGCAAACATATGAAAACTTAATTCATGGAA Spar.....: ACCTAGACGTACTGCAAATGATTGGGCGGGCTGGAAGACCTCAATTTGAAACCCACGGGTGCGCAGTAATTATGACAGACACCAAAATGAAGCAAACATATGAAAACTTAATTCATGGCA Smik.....: ACCTGGACGTTTTACAGATGATTGGGAGGGCTGGAAGGCCTCAATTTGAAACTCACGGATGTGCAGTAATTATGACAGACACTAAAATGAAACAAACCTATGAAAACTTGATTCATGGCA Sbay.....: ACCTGGACGTATTGCAAATGATTGGGCGAGCTGGAAGACCCCAGTTTGAAACTCATGGCTGTGCAGTAATTATGACTGACACCAAAATGAAACAAACTTACGAAAATTTAATACATGGTA consensus: **** ** ** * ** ********* * ** ***** ** ** ******** ** ** ** ******** ***** *** * ******** ***** ** ***** ** ** ***** * 2040~2160: Scer.....: CTGACGTTTTGGAAAGTTCATTACATTTGAATTTGATCGAGCATTTAGCAGCAGAAACCTCTTTGGAAACTGTATATTCAATTGAAACTGCAGTAAATTGGCTACGAAACACATTCTTTT Spar.....: CTGATGTTTTGGAAAGTTCATTGCATTTGAATTTAATCGAGCATTTGGCAGCAGAAACGTCTTTGGAAACTGTCTTTTCAGTCAAAACTGCTGTAAATTGGCTACGAAACACATTCTTTT Smik.....: CTGATGTTTTAGAAAGTTCGTTGCATCTAAATTTGATAGAACATTTAGCAGCAGAAACGTCTTTAGAAACTGTGCATTCAATTGAAACCGCTGTGAACTGGCTGAGAAATACTTTCTTTT Sbay.....: CTGAAGTGTTAGAAAGTTCGTTGCATTTGAATCTGATTGAACATTTAGCCGCTGAGACCTCTCTGGAGACGGTTAATTCAACAGAAACTGCAGTGAATTGGTTACGGAATACTTTTTTTT consensus: **** ** ** ******** ** *** * *** * ** ** ***** ** ** ** ** *** * ** ** ** **** **** ** ** ** *** * * ** ** ** **** Smik_spli: DDDDDD Sbay_spli: DDDDDD 2160~2280: Scer.....: ACGTTAGATTTGGGAAGAATCCAGCTGCATATCAAGAGGTGAACAGATACGTTAGTTTTCATTCCGTTGAAGACTCTCAGATAAATCAATTCTGTCAGTATTTGCTTGACACCTTAGTAA Spar.....: ACGTTAGATTTGGGAAAAATCCGGCTGCGTATCAAGAGGTGAACAAATATGTTAGTTTTCACTCGGTTGAAGACTCTCAGATAAATCAATTCTGTCAGTACTTGCTTGACGCCTTAGTAA Smik.....: ATGTCAGATTCGGGAAAAATCCTGCTGCCTATCATGAAGTGAACCGATATGTCAGTTTTCACTCGGCTGAAGACTCTCAAATAAACCAATTCTGTCAGTATTTACTTGACGCCTTAGTGA Sbay.....: ATGTTAGATTCAGGAAAAACCCATCTGCTTATCATGAAGTGAATAGATACGTTAGTTTCCATTCGGTTGAAGACTCTCAAATAAATCAATTCTGCCAATACTTGCTGGACGCATTGGTGA consensus: * ** ***** **** ** ** **** ***** ** ***** *** ** ***** ** ** * ************ ***** ******** ** ** ** ** *** * ** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD 2280~2400: Scer.....: AAGTGAAAATAATCGATATCAGCAATGGGGAGTACAAATCTACAGCGTACGGAAATGCAATGACGCGACATTATATATCCTTTGAGTCGATGAAACAATTCATTAACGCAAAAAAATTTC Spar.....: AAGCAAAACTAATTGATATGAGTGACGGGGAATACAGATCGACAGCGTACGGTAACGCAATGACGCGACATTACATTTCATTTGAATCCATGAAACAATTCATTAACGCAAATAAAACTC Smik.....: AAGCAAATATAACTGAAATTGAAAATGGGAAATATAAGTCGACAGCTTACGGAAACGCAATGACGCGACATTATATATCATTTGAGTCCATGAAAAAATTTATCACCACAAAGAAACTTT Sbay.....: AAGCAGAAATAATCAAGTTAAGAGACAGGTTGTACAGCCCGACAGCGTACGGAAATGCAATGACGCGACATTATATATCATTCGAGTCTATGAAGCAATTTATTACCGGAAAAAAATATT consensus: *** * *** * * * ** ** * * ***** ***** ** ***************** ** ** ** ** ** ***** **** ** * * *** *** * 2400~2520: Scer.....: TATCATTACAAGGGATACTAAATTTACTGGCCACTTCTGAAGAGTTTTCAGTTATGAGGGTGAGGCACAATGAAAAAAAATTGTTCAAAGAAATCAATTTATCGCCACTTTTGAAATATC Spar.....: TATCATTACAAGGTGTGTTGAATTTACTGGCCACCTCTGAAGAGTTTTCGGTTATCAGAGTGAGGCACAATGAAAAAAAATTGTTCAAAGAAATCAATTTATCTCCACTTTTAAAATATC Smik.....: TATCCTTGCAAGAAGTGTTGAATTTACTGGCCACGTCAGAAGAGTTTTCTGTTATTAGAGTGAGACACAATGAAAAGAAATTGTTTAAAGAGATTAATTTATCACCTCTTTTGAAATATC Sbay.....: TGTCGTTACATGAAGTGTTAAACTTATTGTCTAATTCAGAAGAGTTTTCTGTTATACGAGTAAGACATAATGAGAGAAGATTATTTAAAGAAATCAATTTATCTCCACTCTTGAAGTATC consensus: * ** ** ** * * * ** *** ** * * ** *********** ***** * ** ** ** ***** * * *** ** ***** ** ******** ** ** ** ** **** 2520~2640: Scer.....: CATTTTTAACCGAGAAGAAACAGAGCCAAATAATTGACAGGGTTAGTCAAAAGGTTTCTCTTTTGATTCAATATGAGTTAGGTGGGTTAGAATTTCCATCATACGAAGGCGCTTCTAAAC Spar.....: CATTTTTAACTGGGAAGAAACAGAGCCAAATAATTGACAAAATTAGCCAAAAGGTTTCTCTTTTGATTCAGTATGAATTGGGTGGATTAGAATTTCCATCATACGAAGGGGCTTCCAAAT Smik.....: CATTTCTAACTGAGAAAAAACAGAGCCAAATAATTGACAAAATTAGCCAAAAGGTTTCTCTTTTAATACAATATGAGCTGGGTGGATTAGAATTTCCATCATACGAAGGTGCTTCAAAAT Sbay.....: CATTTTTGACTGAGAAAAAACAAAGCCAAATAATCGATAAGATTAGCCAAAAAGTTTCTCTTTTGATTCAGTATGAGTTGGGTGGATTGGAATTTCCATCATATGAAGGGGCCTCAAAAT consensus: ***** * ** * *** ***** *********** ** * **** ***** *********** ** ** ***** * ***** ** ************** ***** ** ** *** Spar_spli: DDDDDD Sbay_spli: DDDDDD 2640~2760: Scer.....: TACATCAAACTCTTGTTCAGGATAAATTCCTCGTTTTTAGACATTGTTTTAGATTACTAAAATGCATGGTAGACACATTTATTGAAAAAAGTGATGGAACATCACTGAAAAATACTTTGT Spar.....: TGCATCAAACTCTTGTTCAGGATAAATTCCTCGTCTTTAGACATTGTTTTAGATTACTAAAATGCATGGTAGATACATTCATTGAAAAAAGTGACGGAACATCGTTGAAAAATACCCTGT Smik.....: TACATCAAACTCTTGTTCAGGATAAATTTCTCGTTTTTAGACATTGTTTCAGATTGCTAAAATGCATGGTGGATACATTTATTGAAAAACGTGACGGAATATCATTGAAAAATACCTTGT Sbay.....: TACATCAAACTCTTGTCCAAGATAAATTTCTGGTTTTTAGACATTGTTTTAGATTATTAAAATGCATGGTTGACACATTCATCGAAAAGGGTGATGGGACGTCACTGAGAAGCACTCTGT consensus: * ************** ** ******** ** ** ************** ***** ************* ** ***** ** ***** **** ** * ** *** ** ** *** 2760~2880: Scer.....: TCTTACTGCGAAGCCTGAATGGTCACTGCTGGGAAAACACGCCAATGGTTCTTAGGCAATTGAAAACAATTGGACTAGTTTCAGTAAGAAGGCTAATACGACATGGAATTACCAATCTAG Spar.....: TCTTACTGCGAAGCCTGAATGGTCATTGCTGGGAAAACACGCCAATGGTTCTTAGACAATTGAAGACAATTGGGCTAGTTTCAGTACGAAAGCTAATACGACATGGAATTACCAATCTAG Smik.....: TTCTTCTGCGAAGCTTAAATGGCCATTGCTGGGAAAACACTCCGATGGTTCTTCGACAATTGAAAACAATTGGACTGATTTCAGTACGAAGGTTAATACGACATGGGATTACCAACATGG Sbay.....: TGCTACTACGAAGCCTGAACGGCCATTGCTGGGAAAACACACCAATGGTTCTCAGACAATTAAAAACAATTGGGTTAGTTTCGGTACGAAAACTAGTAGGACATGGAATTACCAATTTAG consensus: * * ** ****** * ** ** ** ************** ** ******** * ***** ** ******** * **** *** *** ** ** ******* ******** * * 2880~3000: Scer.....: AAGAAATGGGGCATTTGTCAGATACTCAGATTGAATACTATCTTAACCTCAAGATTGGAAACGGCATAAAAATTAAAAACGACATTTCTTTGTTGCCTTGTCTGAATATTAGAACAAAAC Spar.....: AAGAAATGGCAAATTTGTCAGACACTCAGATTGAATACTATCTTAACCTCAAGATTGGAAGCGGGATAAAAATTAAAAACGATATTTCCTTGTTGCCTTGTCTGAATATTAGAACAAAAC Smik.....: AAGAAATGGGAAATTTGTCAGACACTCAAATTGAATATTACCTAAATCTCAAGGTTGGAAACGGGATAAGAATTAAGAATGACATTTCCTTACTGCCTTGTTTAGATATTAGAACAAAAT Sbay.....: AAGATATGGGGAAGCTTTCCGATACACAAATTGAATACTACCTCAACCTCAAGACCGGGAACGGAATAAAAATCAAAAATGATATTTCTTTGTTGCCTTGCTTGAATATAAGAACAAAAC consensus: **** **** * * ** ** ** ** ******** ** ** ** ****** ** * *** **** *** ** ** ** ***** ** ******* * **** ********* 3000~3120: Scer.....: TAGAAAATTGCAAAATAGAAAATGAAGAGTTGTGGTTGACATTTAAAGTTGAGATTAGTGCAACATTCAAGTCTAGCATTTGGCATGGTCAGCACCTCTCATTAGATATCGAAACCGAGA Spar.....: TGGAACATTGCAAAATGGAAAATGAGGATTTGTGGCTGACATTTAAGGTTGAGATTAGTGCATTATTCAAGTCTAGTATCTGGCATGGACAGCACCTCTCATTGGATATTGAAACTGAGA Smik.....: TAGAACATTACAAAAAGGAAAATGAGGAGATATGGTTAACATTTAAGGTAGAGATTAGTGCAGCATTCAAATCTAGCGTCTGGCATGGTCAACATCTCTCACTAGACATTGAAACTGAGA Sbay.....: TGGAAGATTCCAGGAGGGAGAATGATAAACTTTTGTTGACGTTTAAAGTAGAGATTAGTGCAACATTCAAGTCTAGTGTGTGGCATGGTCAACATTTATCACTAGATATTGAAACGGAAA consensus: * *** *** ** * ** ***** * * * * * ** ***** ** ************ ****** ***** * ******** ** ** * *** * ** ** ***** ** * 3120~3240: Scer.....: AAAGCTCAGGAGAGTTAATCGACTTTAGAAGATTGCAAGTTAACAAACTACAGTCACCAAGGGGCTTTAGAATTTCAGCAAAAATATCACCAAAACTAGAAAAAATAGAATTCTCAATTC Spar.....: AAAGCTCAGGAGAGTTGGTCGACTTTAGAAGACTTCAACTTAATAAACTACAGTCACCAAGAGGCTTCAAAATTTCAGCAAATATCTCATCCAATCTAGAAAAAATTGAATTTTCCATTC Smik.....: AAAGCTCAGGGGAGTTGGTAGACTTCCGGAGATTGCAACTCAATAAACTACAAACACCAAGAGGCTTTAAAATTTCAGCCAATATCACGTCCAAACTAGAAAAAATAGAATTTTCCATTC Sbay.....: AAAGCTCTGGTGAACTAATAGATTTTAGGAGATTGCAGATGAACAAACTCCAATCACCAAGAGGGTTCAGAATTACCACCAATGTCTCATCCAAGCTTGAGAAAATAGAATTTTCGATAC consensus: ******* ** ** * * ** ** * *** * ** * ** ***** ** ******* ** ** * **** * * ** * * * ** ** ** ***** ***** ** ** * 3240~3360: Scer.....: ATTGCCAAGAAATCGCCGGACTCGGCAAAACAATCGTATATTCCACTGATCATTTGGCATCACAGTTCTCTGCGAAGACACCAAATATAAGGAAAGATCTAAATAGTTTAGAAAAATGCC Spar.....: ATTGTCAAGAGATCGCCGGACTCGGAAAAACAATCGTATATTCCACTGACCATCTGGCATCCCAGTTCTTCGCGAAGTCATCGCATATGAGGAAAGATCTAAGTAGTCTAGAAAAATGTC Smik.....: ATTGTCAAGAAATTGCTGGACTCGGCAAAACTATCGTATATTCTACTGACCATCTAGCATCTCAATTATCTACAAAGACTTCACATGTGAAGAAAGACCTAAGTAGTTTAGACAAATGTC Sbay.....: ACTGTCAAGAAATTGCTGGACTAGGCAAAACAATAATATACTCTACCGACCATCTGACTTCTCAGTCTTTGATGAAGGCATCGCCTTTGAAGAAAAATCTAACCAGTCTAGAGAAATGTC consensus: * ** ***** ** ** ***** ** ***** ** **** ** ** ** *** * * ** ** * * *** * * * * * **** * **** *** **** ***** * 3360~3480: Scer.....: TCTTCTATGAAAGCAGTAGTGACGGAGAAGTGGGGAAAACGTCTAGGGTTTCCCATAAAGATGGATTAGAAGAATCGCTATCCTCAGATGATAGTATACTAGATTATTTGAATGAAAGGA Spar.....: TCTTCCATGTGAGTAGTAGTGACGAAGAAGTTGAGAAAACATCTAGATTTTCCCACAATGTTGGCTTAGAAGAATCGCTGTCTTCAGATGACAGCATATTAGATTATTTGAATGAGGCGA Smik.....: TCTTTCATGTGAGCAGTAGTGATGAAGAATTTGAGAAACGACATAAGGTCTATGACAATGATGGCCTTGAAGAATCGCTGTCTTCGGATGATAGTATACTAGATTATTTGAATGAAGTAA Sbay.....: TCTTCCATGTGAGTAGTAGCGACGAGGAAGTTGATACAGCACCTAAGGGATATAATGAAGTTGGTTTGGAAGAGTCATTGTCTTCAGACGATAGCATTTTAGACTACTTGGAGGAAGTAA consensus: **** *** ** ***** ** * *** * * * * ** * * * * *** * ***** ** * ** ** ** ** ** ** **** ** *** * ** * Spar_spli: DDDDDD Sbay_spli: DDDDDD 3480~3600: Scer.....: AGAAATCATCAAAGGCGGTTGAATCTGCAGCAGTTATTCACCCGGAGGCACACTCTTCTTCACATTTTAGTAATGGCCGCCAAGTAAGATCTAATGGCAATTACGAGTGTTTTCATAGCT Spar.....: AGAGGCCGCCAAAGGCGGTTGAACCTGCTGCGGCTATTCACTCAAACGTACATTCTTCTTCACATGGTAGTAATGGCCGCCAAGTAAGATCCAATGGAAATTATGAATGTTTTCACAGTT Smik.....: AAAGGTCTCCAAAGGTTCTTGCACCTTCTAATGCCGCTCACTCAGATGGGAACTCTTTTGTACAGGCAGTTAATGGTCGCCAGGTAAGATCCAATGGTAATTATGAATGTTACCACAGTT Sbay.....: A---ACCAGCAAAGCTTCATAAAGATACGGAACCCCCCCATTCAAACGTACACCCACTCTCACATGGTAATAATGGCCGACAGGTACGATCCAACGGAAATTATGAGTGTTATCATAGTT consensus: * * ***** * * * * ** * * * * * *** ****** ** ** *** **** ** ** ***** ** **** ** ** * 3600~3720: Scer.....: GCAAAGACAAAACGCAATGCAGACATTTATGTTGTAAAGAGGGTATTCCAGTAAAGTATATAAAAGAAAAAGGACCCTCCTCAATCAAGCCAGTATCAAAACCTGATCAAATACGCCAGC Spar.....: GCAAAGACAAAACGCAATGCAGGCATTTGTGCTGTAAGGAGGGAATTCCAGGAAAATATATAAAAGAAAAAGGATCATCTTCAACCATGTCAGTATCGAAAGCTGGTCAAGTACGCCAGC Smik.....: GCAAAGACAAAACACAATGCAGACACTTGTGCTGTAAGGAGGGTATACCAGGAAAATATATAAAAGAGAAAGGAACATCTTCAATCAAGCAACATTTGAAAGATGATCAGGTTCGCAGGC Sbay.....: GCAAAGACAAGACACAATGCAGACACTTATGCTGTAAGGAAGGTATACCAGGAAAGTATATAAAAGAAAAAGGAATATCTTCCACCAAGCCAGCTTCAAAAGTTGATGAGCTTCGCAAGC consensus: ********** ** ******** ** ** ** ***** ** ** ** **** *** *********** ****** ** ** * ** * * * *** ** * * * *** ** Spar_spli: DDDDDD 3720~3840: Scer.....: CACTGCTTGCAAAAAATATCAACACAACCCCTCACCTGG---------------------------AAAAAAGACTGAATAGTAAACCAAAGCAGTGGCAAGAAGAAAATACAGATATTG Spar.....: CGCTGCTTGCGAAAAATACCAATACAGATCCCCACCTGG---------------------------AAAAAGGACCAAAGGGTAAATTAAGACAGTGGCAGGAAGAAAGTACAGATACTG Smik.....: CCTTGATTGCAAAAAATATCAATTTAGTTTCTAACTTGG---------------------------AAAAAAAATCAAACAATAAGTTAAGTCAATCGAAGGAAGAACATTCCAATACTG Sbay.....: CTTTAGCTTCTAAAAGCGTCAATATAGTTCCGTACACAGAAAATCCTCACCGTTTTACGTCGACGCAAAAAGATTCAAGCCATAGATTCACTCAGTGGCACGAAGATGATTCTTCAACAG consensus: * * * * **** *** * * ** * ***** * ** * ** * * * ***** * * * * Smik_spli: DDDDDD 3840~3960: Scer.....: CGACAGTTCATACACTTCCTTCAAAAATTTATAATCTATCGCAACAGATGTCGTCTATGGAAGCGGGTGAACAAGTCCTAAAATCAGGCCCCGAAAACTGCCCTGAAATAATTCCTATTG Spar.....: GGGCAGTTCACCTGCCTTCTTCAAAAGTTCATGATGTCCC---TCACATGTCGTTTAAGGAAGCAAATGTACAAGTCTTACAACCCGCTCCGGAGATTTTCCCTGAAATAACTTCCATTG Smik.....: GAGTAGTTCGTTCACACTCTTCAGAAATTCATGATCTAC---ATTACACGTTTTTTAGGGAAGGTAACGAACAAATCTTACCACCTGACCACGAAGATTGCCCTGAAATAATCTCCATTG Sbay.....: CGCCATACCGCCAGCCGTCTTTAGAAGTTCAGAATTTATC---TCAGATGTCAAATGAGAAAACAAATGAACAAGCCTTACAGCCTCCCTTGAAAGATTGCTCAGAAATAATCACCGTTG consensus: * * * *** * ** ** * ** * * * ** * * ** * **** * ** * * * * * ******* * *** Smik_spli: DDDDDD 3960~4080: Scer.....: ATCTTGAATCATCCGATAGTTATTCTAGTAATACAGCGGCGAGCTCAATAAGTGATCCGAATGGTGATCTGGATTTCTTGGGTTCCGATATAGAGTTTGAATGAgcggcatggccgggaa Spar.....: ATCTTAAGTCATCCGATGGCTATTCTAGCAATACAGCGATAAGCTCAGCAAGTGATCCGACTGGTGGTCTGGATTTCTTAGGTTCGGATATCGAGTTTGAATGAgcggcatggctggaaa Smik.....: ACCTTAAATCCTCTGATGGTTATTCTAGTAATACGGAAACAAGTCCACTAAGTGATCATAAAGGTGATTTGGATTTTTTAGGTTCAGATGTGGAATTTGAATGAaaggcatgactgg-aa Sbay.....: ACCTCAAGTCTTCCGATGACTATTCCAGTGATACAAGTACAGATCCAGCAACTGATCATCATGGTGACTTAGACTTTTTAGGTTCGGATATAGAGTTTGCATGAgtaacatgaccggaca consensus: * ** * ** ** *** ***** ** **** ** ** ***** **** * ** ** ** ***** *** * ** **** **** **** * ** * 4080~4200: Scer.....: caat-agacattac--tgata---ttcattaccccaatcctttct----gttatttgtattgcttcccaacagaagtta-gcatgtgt--gagagtttacttataatgctttgtttttaa Spar.....: caat-agacattac--taatatatttcattaccctgattcattct----gacatttttagtgctccccaatagaggttg-gtatgcct--cagagttgacac-tcctgctttggttatta Smik.....: caat-agacatttc--taattctttctattaccatgatttgctaa----gccatttgtcgtgcttaccaactgagcctg-atatgcctaaaagagtcaaatcatccttttttggtgttca Sbay.....: caatcggatgttaccgtaattctcctcactgccgtgatcccttctttccttcgttggtagtatttcgcaatataactcacttatgtttgaaagagcaaggaacagctgtttcggcgactt consensus: **** ** ** * * ** * * ** ** * ** * * * *** * *** * **** * ** * Scer_spli: DDDDDDD Spar_spli: BBBBBBBBB DDDDDDD 4200~4320: Scer.....: aatgcagccagtggtgaaacaattggaacctttactatttattagggaacaagat-gacattgtcaattgatatattactattgttacatatcgtgctatttatcatttcaattattagt Spar.....: a---taaggagtggtgaaataatcttaacctctacaatttatcggggagcatgat-gacattgtcaatcaattcattattatcgttatataccacgctatttatcatctctattattagt Smik.....: a----aagcactgataaaataaccttaactttttcaatccatta-gaagtacaac-gacgtcgttaattaacttgttattattgttatatactacgctatttatcatttcta-gattagt Sbay.....: aa--cgcactgtgttgaactgatgaaaactctccaatttctttgagaaatattttcgactttgtcaagttattcgttattacccttatatactgtgctatataccatttctact-ttagt consensus: * ** * ** * *** * * * * * *** * ** ** * *** ** *** *** ***** ** *** ** * ***** Smik_spli: BBBBBBB 4320~4440: Scer.....: cacatgaccgcgataagcgatccgggtcagaatg-ccgagataggataactttgccggcggagttcctagatcaattgaaagaatcgaagtgagattagtaattcattcatatgtacctt Spar.....: cacatgaccgcgataggtgatccgggtcagaaaacccgagatggagtaactttaccggcggaatttttagatcaattgaaagaatcgaagtgcgattagtaattcattcatacgtttctt Smik.....: cacctgatcgcgatatatgatccgggtcagtgagcccgagatggaataactttaccggcggaattcttagatca---------------------------------------------- Sbay.....: cac--------------------------------------------------------------------------------------------------------------------- consensus: *** Smik_spli: DDDDDD 4440~4517: Scer.....: ttaaaaaagaaactcactcttggaagtgtcctttactaaggattgttttgaacgaaaagt--gtaggcgtgccacaa Spar.....: tcaaaaagcaaa-gcattcttgaaggtatcttttgctgagaatcgttctgaacaaaaagttgataggcttgctacaa { alias......: [] chromosome.: 7 description: Hypothetical ORF end........: 498029 exons......: [(1, 35), (98, 576), (670, 902)] gene.......: introns....: [(36, 97), (577, 669)] length.....: 902 name.......: YGR001C plength....: 300 start......: 497128 tdist......: 497128 type.......: ORF up.........: 0 } Scer: 4 donors and 5 branches Spar: 4 donors and 3 branches Smik: 4 donors and 4 branches Sbay: 8 donors and 5 branches INTRON SPLICING FOUND!! [ ->[('Scer', 509), ('Spar', 509), ('Smik', 509), ('Sbay', 509)] ->[('Scer', 1052), ('Spar', 1052), ('Smik', 1052), ('Sbay', 1052)] ->[('Sbay', 334), ('Sbay', 342)] ->[('Scer', 1768), ('Sbay', 1762)] ->[('Smik', 820), ('Sbay', 820)] ->[('Sbay', 1671)] ->[('Sbay', 1921)] ->[('Scer', 27)] ->[('Smik', 1717)] ->[('Spar', 252)] ->[('Spar', 862)] ] [ ->[('Scer', 546), ('Scer', 550), ('Spar', 546), ('Smik', 546), ('Sbay', 546)] ->[('Scer', 1115), ('Spar', 1115), ('Smik', 1115), ('Sbay', 1115)] ->[('Spar', 561), ('Smik', 560), ('Sbay', 564)] ->[('Sbay', 382)] ->[('Sbay', 1007)] ->[('Scer', 423)] ->[('Scer', 861)] ->[('Smik', 145)] ] 0~120: Scer.....: acatcagaaaatgctttttgctagcacgtatgtgattaaaatttttgcgtaaaatagac-tgttttataatatttggtgtacaacatgggaccttcagaggtactt-tcggaaatcacgc Spar.....: acttcaggaaatgctttttgttactat-tatgagatcgacattgtcgagtcaaatgatcatgcatcgtgaaacttggtacataaaatagaatctcgagaggtactt-tcgtaaattacgc Smik.....: ---------------------------------------acatgtagagttaact-gccattcttcattggccttgatgcttaccatagaacatttgaaggcatttatgataaattatac Sbay.....: tcctcagaaaa-----ctagttaaaatcaataaaaactatgggatcaaccattaagactatgagctat-acgcttaatctctagactaaaaccttca-aggcgctaagggttgacgacaa consensus: * * * ** * * * * * *** * * * Scer_spli: DDDDDD 120~240: Scer.....: aaatattatgc----actagt-aaccctcaatct-ctaaataacttatattgtca---tctgtaaggcagcaaaatc---caagatgggcaatgtatataggtat-atagtttagtattg Spar.....: aaatgctaagt----gctggtaaaccgctaatctcccaagtagcttatattttcactctttgtgatgctgcaaaatc---caaggtggaaattgtacataagtaa-atattatcgttatt Smik.....: aaatgctaggc----gctagtaaacgactaacatcccaaggagcttatatt-tcact-tatttaagtcaacaggatc---caagctggg-aatatatatagatat-gtaatgtactcttt Sbay.....: gagtgccgtgtattgactggctagcggcttccttcttgaaattctaatatt-tcactttccttagggcggcatgctcgtaaaaggtggggggcaaatactgttataatattacaatcgaa consensus: * * * ** * * * * * ** ***** *** * * * ** ** *** *** * * ** ** * * Smik_spli: BBBBBBB 240~360: Scer.....: ---tcat--ctcatagaatatcaactgcataatat-acatgtatatat-aatttcccattcatttagaggctt-cttttttcgtctgtatcgct--------gaaccttatgccggttaa Spar.....: ---ttgtagggcgtaagttgctcaatgtacgacctgacatgcttatttgaatgctttgtttcattcggggctt-cttttttcatctgcatcgct--------gaacgtcatgccggttaa Smik.....: gcctcataggaagtaaagtgcataatatacagtctgtcatttttatacaataattactttctttcggagacac-cttttttcatctctttcgct--------gagtgctatg-cggttga Sbay.....: -ctttttataacctaaatagcgtaatatatag----atgtagctacaa-aataccagtttcactccaactcttattttttttatctgcctcgctgtatgacggcatgtcatgccggttga consensus: * * ** * * * * ** * ** * * ****** *** ***** * *** ***** * Spar_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 360~480: Scer.....: atctaac--aaaatttttttgaactggaggaactaaaaaaaaaaatattaatcttgactaatatactaatcagtcactttacatcttaatgaaaccgaaagaatcactgataaaATGTCC Spar.....: atcttac--aaaatttttttgaactggaggaactaaa----aaattcatcatcctcactaatatacaagcctgccattgtatattttaacgcaacgcaaagaatcactgataaaatgtcc Smik.....: atctttt--tgattttttctgaactgaagaaagcaa-----gaaat----atcatagctcttg-actatgttatgattatacatcttaacgcaac-gaaaaaaccactgacaaaatgtct Sbay.....: ttcacataaaaaaaattttaaaaattaacaacgtaca----ctactatagaatgt-attatgatataatttgatcattgtaaatcttaaaaggaccgaaaaaaaaacatcagaaatgtcc consensus: ** * *** ** * * * * * * * * * * * * * ** ** **** ** *** ** ** ******* Scer_spli: BBBBBBB Sbay_spli: BBBBBBB 480~600: total....: ====== Scer.....: GACTCCGACTCCGACTCCGATTATGAATTGTAAGTACAGGATATTTTCAACACAGTAACGTAGAATTACTAACTAACACGAAA--CTTAATAGGACACTTTCTGCTAATGCCCTCGCTGC Spar.....: aactccgactccgattccgattatgaattgtacgtataaactagttccgataaaggaaggcaaaaatactaactaatataaaa---ttaacaggacactttctgctaatgccctcgctgc Smik.....: ggctctgactctgactccgattatgaattgtatgtataaggtattttcaatatagggagagagaattactaactaaaagaaa----ttaacagaacactttctgctaatgccctcgctgc Sbay.....: agctctgactctgactccgactatgaattgtatgtgaagaatagttttgatattagaaaacgcaattactaactagaataaaaatattaacagaacactttctgctaatgccctcgctgc consensus: *** ***** ** ***** *********** ** * ** ** * * * ** ********* * ** **** ** ************************** Scer_spli: DDDDDD BBBBBBBBBBB Spar_spli: DDDDDD BBBBBBB BBBBBBBBBB Smik_spli: DDDDDD BBBBBBB BBBBBBBBBBB Sbay_spli: DDDDDD BBBBBBB BBBBBBB known....: >=============================================================>= 600~720: Scer.....: CCTTGAAGAATTCAAAAGAGAGGAACAACAACATCAAGAAGCCTTTCAAAAGCTTTACGACGAAACGGATGAAGACTTCCAAAAGAAAAAAAAAGAAGAAGGGATGAAGCTTTTCAAGGA Spar.....: ccttgaagaatttaaaaaagaggaacaacaacatcaagaagtcttccaaaagctctacgaccaaactgatgaagacttccaaaagaagaaaaaagaagaagggATGAAACTCTTCAAGGA Smik.....: ccttgaagaattcaaaaaagaggaacaacaacaccaagaagttttccaaaagctttacgaccaaactgatgaagatttccaaaaaaagaaaaaagaagaaggaATGAAGCTTTTCAAAGA Sbay.....: ccttcaagaattcaaaaaagaggagcaacagcatcaagaagttttccaaaagctttacgatcaaaccgatgaagaattccaaactaagaaaagggaggaggggATGAAACTCTTTAAGGA consensus: **** ******* **** ****** ***** ** ******* ** ******** ***** **** ******** ******* ** **** ** ** ** ***** ** ** ** ** 720~840: Scer.....: AGATTGGCAGCTTTCCCAGTTTTGGTACAGCGATGACACAGCCGCAATTTTAGCAGATGCCATATTGGAAGGTGCGGACGAAAACACTGTAATTGCAATAGTTAGTGCGCCATCCGTCTA Spar.....: AGATTGGCAGCTCTCCCAATTTTGGTACAGTGATGAAACAGCCGCAATTTTAGCAGATGCCATATTAGAAGGTGCTGATGAAAATACTGTAATCGCAATAGTTAGTGCGCCATCTGTCTA Smik.....: AGATTGGCAACTCTCTCAATTTTGGTATAGTGACGAAACGGCTGCAGTTCTAGGAGATGCCCTACTAGAAGGCGCTGATGAAAATACCATTATCGCAATAGTAAGTGCCCCATCTGTTTA Sbay.....: AGATTGGCAACTCTCTCAATTTTGGTACAGTGATGAAACAGCCGCAACCCTAGGAGATGCCCTACTAGAAGGCGCTGATGAAAATACTGTCATTGCGATAGTCAGTGCCCCATCTGTTTA consensus: ********* ** ** ** ******** ** ** ** ** ** *** *** ******* ** * ***** ** ** ***** ** * ** ** ***** ***** ***** ** ** Smik_spli: DDDDDD Sbay_spli: DDDDDD 840~960: Scer.....: TGCTGCCATTCAAAAGAAACCTACTAATGAAATTCCAACCGAACATATCTACTTGTTCGAATTTGATAAGAGATTCGAGTTGTTAGCTGGAAGAGATCATTTCTTTTTTTATGATTACAA Spar.....: TGCTGCTATTCAAAAGAAACCTGTCAGTGAAATTCCGACTGAACATATTTACTTGTTCGAGTTTGATAGGAGATTCGAGTTGTTAGCTGGAAAAGGTCATTTTTTTTTCTATGATTACAA Smik.....: TGCTGCTATCCAAAAGAAACCTATCAGTGAAATTCCCACCGAGCATATTTACTTGTTCGAATTTGATAAAAGATTTGAATTGTTAGCTGGAAAAGACCACTTTTTTTTTTACGACTACAA Sbay.....: TGCTGCCATCCAAAAAAAACCCATCAGTGAAATTCCAACAGAGCATATTTATCTGTTTGAATTCGACACAAGATTTGAATTGCTGGCTGGGAAAGATCACTTCGTCTTTTACGACTACAA consensus: ****** ** ***** ***** * ********* ** ** ***** ** **** ** ** ** * ***** ** *** * ***** * ** ** ** * ** ** ** ***** Scer_spli: BBBBBBB Spar_spli: DDDDDD 960~1080: total....: ====== Scer.....: TAAACCACTGGACTTCAGTGATGAAATTAAAGGAAAAGTTGATAGATTGTTAATTGACCCACCTTTTTTAAATGAAGATTGTCAAACAAAGTGTATGTATATCATAAACATATCCCTACT Spar.....: CAAACCACTGGAATTCAGTGATCAAATTAAGGGGAAAGTTGACAGATTGTTAATTGACCCACCTTTTTTGAATGAAGATTGCCAAACAAAATGTATG--TATTATAAACATATCTCCCTT Smik.....: TAAACCACTGGAGTTCAGTGATGAAATTAGGGGCAAGGTTGATAGATTGCTGATCGATCCACCCTTTTTAAATGAAGACTGCCAAACTAAATGTATG--TATTTTACAC----------- Sbay.....: CAAACCTCTCGAATTCAGTGATACAATTAAAGGGAAGGTCGATAGATTACTAATCGATCCGCCTTTTTTGAACGAAGATTGCCAAACAAAATGTATG--TATTATAAGCAC--------- consensus: ***** ** ** ********* ***** ** ** ** ** ***** * ** ** ** ** ***** ** ***** ** ***** ** ****** *** ** * Scer_spli: DDDDDD Spar_spli: DDDDDDDD Smik_spli: DDDDDDDD Sbay_spli: BBBBBBB DDDDDDDD known....: >=========================== 1080~1200: total....: ======= Scer.....: CATTTTTTAATCTTTTTTCCAGTATCTTTTCATCTTACTAACTGTTATTCATTGATATAAAATAGCCTCTATCACTGCAAAGTGTTTATTAGCGCCAAATGACAACTCTAAAACTAAGAA Spar.....: GATCTTTT--CTCTCTTACCAATAACCTTTCGTCTTACTAActgccattcactgatgtaaaatagcctctatcactgcaaagtccttattagcaccaaatgacaactctaaaactaagaa Smik.....: --TCATTTAAATCCCTTTCCG-----CTTTCATCTTACTAACTGTCATAGATCAATTTAAAACAGCTTCTGTCACTGCGAAATCTTTATTGGCTCCCAATGATAACTCTGAAACAAAATA Sbay.....: --TTTTACCATTCTTCCTCTA-TAAGCAATTGTCTTACTAACTGCCCTCCATGAata-aaaacagcctctattactgcaaagtctctgttggcaccaaatgaccattccaagactaataa consensus: * * * * ************ * * ** **** *** *** * ***** ** * * ** ** ** ***** * ** * ** ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ===============================================================>= 1200~1320: Scer.....: AGGAGTTTTTAAGCACCGCCTCATAAGTTGTACTGGTGAAAGAATGTCTGAAGTCATATCCAAAGTTTATTCTGACACAAGAATAACAACTTTTCTTCCTGAACATTCTAATGGTTTGAG Spar.....: tggagtttctaagcaccgcctcattagttgtacaggtgaaagaatgtctgaagtcatatccaatgtttattcggatacaagaatcacaacttttcttcctgagcattctaatggtttgag Smik.....: TGGAGTTTTAAAGCACCGTCTTATTAGCTGCACAGGCGAAAGAATGTCTGAAGTTATATCCAACGTTTATTCAGACACAAGGATCACAACTTTTCTTCCAGAGCATTCTAATGGTTTAAG Sbay.....: tggagttttcaaacatcgtctcataagttgtacaggcgaaagaatgtccgaagttatatccaaggtttactcaaccacaagaatcacaacttttcttccagagcattctaatggtttaag consensus: ******* ** ** ** ** ** ** ** ** ** *********** ***** ******** ***** ** ***** ** ************** ** ************** ** 1320~1440: Scer.....: TAACGAATTTAGGTGCTACGCAAATTTTGAATGTAGTTCATGGAAATTTGCTTCTTGAgc-tttttaagagcttcgataaatttgaaaattaattgtactacat---------aaaaaat Spar.....: caatgaatttagatgttacgcaaattttgagtgtgattcatggaaatttgcctcttagac-ttcttaggagcctaaaaagggtcaaaatatttctgaattacgt---------agattac Smik.....: TAATGAATTCAGATGTTACGCAAATTTTGAATGTCATTCATGGAAATTTGCTCCTTAActattcataggcctttggaaaggaacaaaagtagaatgaactatatactgtctaaaaaactt Sbay.....: taacgaattcaggtgctacgcaaatttcgagtgtaaatcttggacgtttgctccttaagcttcctcgtgattataacgggtatcgaagattacataaactatataaattatttaataaac consensus: ** ***** ** ** *********** ** *** ** **** ***** *** * * * ** * * ** * * 1440~1560: Scer.....: atgtaaacatcaatatatataatataatcacatttcaaatatatcacgtgttatatttactatataaaaattcaataaataaaaagttagaagataaaaattatattata---catattt Spar.....: ataaaattatctata--------------acagttgctatataacaattgttattgttcct-catagacac----------------------gtgcaaatttta----a---tattttt Smik.....: acgtaatataagatatatataatacttgaatgatctagctctactacacgtgataatttttgaatatttatttag-aattatttattattttcacataattcataaaataaagtgtttct Sbay.....: ttatgaaactttgttttgat--cacgtgaaaattttccactaaatatatataatagtttttattttgattatt----------------ttacatataaatatttcaaaa---cgtttta consensus: * * * * * * * ** ** * * ** * * * * * 1560~1680: Scer.....: ttatttttattataatttttgtttttgccttccgaaaagaaaatagtttt-ttgtattacggaaa-------ttacagaaaaatgtttaattttgat-ttcatattttttctttctttga Spar.....: ttattttatatataaaat----------------ataaaaaactattaat-ttatat-------a-------tcaaacgaatattttcagaataaat----atgtttttgctttc----- Smik.....: taaacgttattttattattgtatttgttttccgaacaaaataatatgattactatatccgaacaacgggacttttcattacaattttttatggactt-gagattctcttttatgtttttg Sbay.....: taaaatattttattgtttaagatt-----accgaatagtaaaaaatgttt-tcagatgccgagccccagaaaactcatatccgaaattgattttattggagatagtgtttggtatgaaaa consensus: * * * * * * * * * * * ** * * * ** * ** * Sbay_spli: DDDDDD 1680~1800: Scer.....: aagaatattgacgacaaagtattggataattataatgcaaggaaagga-tatttgtagatcttcggttca-atgaaagttaatg--cggtatgaatattgctttctccaggacctttttt Spar.....: ----------------------cgaacaatta--------------aa-ttttattaattgttcg--------gaaagttta--------aaaaatatt--tatcttgaa------tttt Smik.....: aatcgtattggagataaggaaattcactgttgcaacagtacgtataaactgttcctagactcaaaattaatataaaacttgatagtggctgcagttattacctttccaaaa----cctct Sbay.....: aaatatggtggt-aggtctttacaaataactacggtttagcccgctcataagttgaaagatttagatctatgttgatggtagg--tacgtgctcatcatatcttcctgcag----tatat consensus: * * * * * * * * * * * * Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDDDD 1800~1920: Scer.....: tttttttagaggctattttattg-tcggtgtttgtggattttatatttctcggtccgatagtccctatagatcgtttattgttctctcgagaaatggtatcgttta-aaaatctcatata Spar.....: tttttctagaatttattttgttgttcggtgtttatggattttacatctctcggtccgatagaccccatagatcgtttattgt--tctcgaaaaatggtatcgttta-aaaatctcatata Smik.....: tgttcctggtgattgttttattactcggtgtttatggactttaagtttttcggtccgatagcccccatagatcgtttattgttctctaaaaaaatggcatcgtttagaaaatctgatata Sbay.....: ttgtcctgtacctttcgttattgttcggtgtttatggattttaagtttttcggtccgatagcccccatagatcgtttattgttcactggaaaaatggtatcgtttagaaaatcccatata consensus: * * * * ** ** ********* **** **** * * ************ *** **************** ** * ****** ******** ****** ***** 1920~2040: Scer.....: agcctgcaaggaaaag--attatgctgcagctataaaatagaatagacaacaatatagattgtcaa-ttttgtccaattttatttgcaactc-tacctgg-aagggcaaacaaaaa--ta Spar.....: agtctgcaaggaaaag--attatgttgcagctataaaatagaatatacaatcgtacaggctgccaatttttgtccaatcccatctg-aactc-taactggaaaggataagcaaaaaggca Smik.....: agtgtccaa-gaaaag--attatgttgcagctataaattaccaaacacattcatataggttatagatatttgtccaatattgactgaactttatagctcgaaaggacaagtataaagata Sbay.....: agtatgcaaacaaaaattatcaagatgcagctataaaacacaatacatgaacgc-------------cttgattcaatttt---tgaaactttgaggtagaaaaggcaaataagaaggta consensus: ** * *** **** ** * * ************ * * * * ** * **** ** * * * * * ** * ** * ** * Sbay_spli: DDDDDD 2040~2043: Scer.....: aat Spar.....: aat Smik.....: aat Sbay.....: agc consensus: * { alias......: ['ERV1'] chromosome.: 7 description: involved in mitochondrial biogenesis end........: 544199 exons......: [(1, 86), (170, 653)] gene.......: ERV1 introns....: [(87, 169)] length.....: 653 name.......: YGR029W plength....: 217 start......: 543547 tdist......: 543547 type.......: ORF up.........: 1 } Scer: 4 donors and 5 branches Spar: 2 donors and 3 branches Smik: 3 donors and 4 branches Sbay: 8 donors and 4 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1832), ('Spar', 1832), ('Sbay', 1832)] ->[('Sbay', 1587), ('Sbay', 1591)] ->[('Sbay', 2675)] ->[('Sbay', 3167)] ->[('Sbay', 3687)] ->[('Sbay', 4204)] ->[('Sbay', 4964)] ->[('Scer', 1957)] ->[('Scer', 2704)] ->[('Scer', 3563)] ->[('Smik', 3580)] ->[('Smik', 3676)] ->[('Smik', 4172)] ->[('Spar', 1678)] ] [ ->[('Scer', 1900), ('Spar', 1900), ('Sbay', 1900)] ->[('Scer', 3976), ('Spar', 3976)] ->[('Sbay', 1509)] ->[('Sbay', 3344)] ->[('Sbay', 4726)] ->[('Scer', 2648)] ->[('Scer', 2883)] ->[('Scer', 3505)] ->[('Smik', 3332)] ->[('Smik', 3416)] ->[('Smik', 3878)] ->[('Smik', 4104)] ->[('Spar', 2058)] ] 0~120: Smik.....: ggaaaNNaNNcaNNNgNaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sbay.....: ggtgagaagactggcaatt----------------------------------------------------------------------------------------------------- consensus: ***************************************************************************************************** 120~240: consensus: ************************************************************************************************************************ 240~360: consensus: ************************************************************************************************************************ 360~480: consensus: ************************************************************************************************************************ 480~600: consensus: ************************************************************************************************************************ 600~720: consensus: ************************************************************************************************************************ 720~840: consensus: ************************************************************************************************************************ 840~960: consensus: ************************************************************************************************************************ 960~1080: consensus: ************************************************************************************************************************ 1080~1200: consensus: ************************************************************************************************************************ 1200~1320: consensus: ************************************************************************************************************************ 1320~1440: Scer.....: -------------------------------------------------------------------------------------------------------------------ggaag Spar.....: -------------------------------------------------------------------------------------------------------------------.agaa Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaN Sbay.....: -------------------------------------------------------------------------------------------------------------------aaaac consensus: ******************************************************************************************************************* * 1440~1560: Scer.....: gaaaattagaaaaaaaagaagaaagctttttattcacgcatcatatcatatcagata----agctagttttcacat---aatatgtgtatatgcagtatactcctgtacataacttcctt Spar.....: gaaaattggtaaa-----aaaaaagccttttacttatgcataatttcatatcacaaat----gctagttttt-------acctaatatatacgcagcatgcttttgtacataacttcttt Smik.....: NaaNNtNNNNNNaNNNaNNNNNaNNNcNNaNNNNNNtNtNtNNNatNNtaNcNNaNNNNNNNNNNaNNNNacNNNNN--aNNNaNNaNNNNtNcaNtatNNtNcNgNNNNNaacttNNNN Sbay.....: caaaatttgagaatttgaaacaaggcctag-atttctgcattatcttgtgtcaaatatcaaatcaagtgtgctaacttcaccaaatatatatgcaatattcttctgtacatagcattttt consensus: ****** * ** ** ** ** * * * * ** ** * * *** * * * *** * * * **** *** ** ** ******** * * ** Sbay_spli: BBBBBBB 1560~1680: Scer.....: tatttctg-ctttataatt--------atatactagttatttttctt--------gggccgcttt-tattacg--gcaactattctatca-ggtttagtcataatctaaat-ctaaagat Spar.....: tatttctg-cgttataatt--------atatattggttatttttcttt--------ggccgctttgtaacatgacggcactattctttca-ggtttagtcataatctaaattcaaaaggt Smik.....: NNttNNNNNNaccaNNNNNtNNNNNNNNtNNNNNaNtaNtttNNNNtNNNNNNNNNNNNcNNNNNNtNNNaNg--aNcgNNattNNNNNNNNNttNaNNNatNNNNgNaNN-NaNgNNat Sbay.....: tactattg-tgttactatctatctagagtatgtcagtatttttttatttca----aagacgcttagtaatgcc--cgccccatttcttca-tatatagtcatctcgaaatt-caaatgat consensus: ** * *** * ** *** ** ***** * **** * ***** ** * *** **** * ******* ** * * * * * Spar_spli: DD Sbay_spli: DDDDDDDDDD 1680~1800: Scer.....: ggggaaa----agccaaaaac---a-ctcaacttt---caatgaatac-aaagcttc--ATGAAAGCAATAGATAAAATGACGGATAATCCACCACAAGAAGGCTTAAGTGGGAGGAA-- Spar.....: ATGAAAA----ATTCAAACAA---TGCTCAACCTT---TGATAAATAC-AAAGCCCCCCGTGAGAGCAATCGATAGAATGACAGATAATCTTCCACAAGAAGGTTTAAGTGGGAGGCA-- Smik.....: gNaaaNNNNNNaNNcaaaaaNNNNaNNNNaaNNNtNNNNaatNNtNNNNaaNNaNNt--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sbay.....: ggaaaaagg--agatggaatt---atcttaacgttacgtaaaagacaa-aagaccta--atgacagtaatcaatagaatggccaataactcacctcaagaaggcttgagtgggaggca-- consensus: *** *** * *** ** *** ** * * *** *** ** *** *** **** * **** ** ******** ** ********* *** Spar_spli: DDDD 1800~1920: Scer.....: AATAATAT-----ATGACGAAGATGGCAAACCGTATGTT------GGATTACGC-AAAGCAATTCAGGATCTACTGATCCAATCAA-GCTTGTGATTTTTTATTAACAAATTCTCTATAA Spar.....: AATAATAT-----ACGACGAAGATGGGAAACCGTATGTT------AAATTATGC-AAAACAACTCAGGATCTTCTGGTCCAGTCAA-GCGTGTAAT-TTTTATTAACAAGTTCTTTATAA Sbay.....: aataatgt-----acgacgaagacggcaaaccgtatgtt------agaccattttagaacgagtcaggatccactgatttattcc--gtaagcgacattatattaaccaaccctttat-- consensus: ****** ******* ******** ** ****************** * * * * * * ******** *** * * ** ** * * ** ******* * ** *** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >======================================================================================= 1920~2040: Scer.....: -TAGTTGCCGATCATGTAACACCCTACTTGACTTTCAGTAC-GTGACCGGGAAGATAT-CTAATGGCCTG-------------------AAGAACCTCTCATCTA----ACGGTAAACTA Spar.....: -TAGTTGTCGATCATGTAACACCCTACTTGATTTCCAATAT-GTGACTGGCAAGATAT-CGAACGGCCTG-------------------AAGAACCTTTCATCCA----ATGAAACCCTA Sbay.....: --agttgccgatcatgtaatactctacttgatttccaatat-gtgaccggtaaaatta-gcaacggcttg-------------------aagaacctttcgacta----atgccacctta consensus: * ***** *********** ** ******** ** ** ** ****** ** ** ** * ** *** ***************************** ** * ****** * * ** Scer_spli: DDDDDDD known....: ==>= 2040~2160: Scer.....: GCAGGTACGGGG-GCTCTCACT----GGCGAAGCTTCAGAGTTGATG--CCTGGCTCAAGAA-----CATA-CAGGAAGGTTGACCC----TCCTGACGTAGA-GCAACTAG--GTAGAT Spar.....: GCAAATACGGCG-GCTTCGACT----AACACACCTTCAGATTTAGTA--CCTGGCTCAAGAA-----CATA-CAGGAAAATTGACCC----TCCTGACGTAGA-GCAACTAG--GTCGGT Sbay.....: gcgaacactgcg-gctgccacc----gctacatctcaggatctaata--cctggctcaagaa-----cata-cacgaaggttgaccc----ccctgatgtaga-gcaactag--gacgat consensus: ** ** * ***** ** **** * ** ** * * *************************** *** *********** ***** ***************** * * Spar_spli: BBBBBBBBBBB 2160~2280: Scer.....: CTTCATGGACGCTGTTACACTCTGTAGCTGCCAGCTATCCTGCTCAACCTACAGACCAACAGAAGGGT-------GAAATGAAACAGTTCTTGAATATCTTCTCACATATTTATCCT-TG Spar.....: CTTCATGGACACTGTTGCATTCTGTAGCTGCCAACTATCCTGCTAAACNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN Sbay.....: cttcatggacactactgcatgctgctgccgccaactaccctgtcaaacctagtgatgaacagaaaggt-------gaaATGAAACAATTCTTAAATATATTCTCACATATTTATCCC-TG consensus: ********** ** * ** *** ** **** *** **** ****** ** ******* ********************* ***** ***** ***************** *** 2280~2400: Scer.....: CAACTGGTG--TGCTAA--AGACTTTGAAAA-ATATATCAGAGAAAATGCACCA--CAAGTTGAGTCAAGAGAAGAACTTGGGA--G--GTGGATGTGTGAA---GCCCACAATAAAGTC Sbay.....: CAACTGGTG--TGCTAA--AGACTTTGAAAA-GTATATAAGAGAAAACGCTCCA--AAAATTGAATCAAGAGAAGAGCTTGGTA--G--ATGGATGTGCGAG---GCCCATAACAAAGTC consensus: ******************************** ***** ******** ** ***** ** **** *********** ***** ****** ******** ** ******** ** ****** 2400~2520: Scer.....: AATAAGAAATTGAGGA-AGCCCAAA---TTTGACTGTAATTTCTGGGAAAAAAGATGGAAGGACGGCTGGGACGAA--TAAgtacaatc-tcagaattctgaaggaacacataaaagaca Spar.....: NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNgNNNNNtNNNNaNNNNtNtNaagNNacgNNNNNNNNNNa Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcNNaNNNNNNNNNNNNtNNNaNNaNNNNNNNaNNNNNN Sbay.....: AATACTAAACTGAGAA-AGCCTAAG---TTCGACTGTAATTTTTGGGAAAAAAGATGGAAGGACGGCTGGGATGAA--TAAgcaaaattattagaaatttgaaaacacactcaaaag-ca consensus: **** *** **** ****** ** ***** *********** ***************************** ********* * *** * **** * **** ** * ***** ** 2520~2640: Scer.....: atttatacatatttacagattctcgtgtatataacactccaatcgtattga-tcagtca--tatgttggctt-ttttatt---taggcttgagc-tctaactt-t---ccagatga--at Spar.....: NttNNtNNaNNNtNacNaatNctcNNNNatNtNNNNNtNNNagNgNatNNa-ttNNNcNNNNNtatNaNctNNNNagNNN---NNNNcNcgaNcNNNNNNNNN-N---NNNaNtgNNNaN Smik.....: aNNNNtNNatNtNNNNNNNNNNNcaNNtNNNNNNNNNtNNNNNNNtNNNNNNNNaNNNN--tNtNNNaNNNN-NNNNNNNNNNNNNNNNcaNgcNttNgNcNNNNNNNNtNNNtNc--NN Sbay.....: at--atttgtatatatcgatgctcgtgtatataatatttagat-atattag-gtaggc---tttgcagcctc-aaatttt---tcaacttgggtgtttatgtt-t---ataaataa--gg consensus: ** ** *** ** ** *** ********* * * * **** * ** * *** * ** * ****** ** * * * ******* * ** ** 2640~2760: Scer.....: gacttttctactaatatatgttaggat------taata--gttttatatgtataaaaatatttagtcagtatttagctaaaa--agttt---actttcaaa--gaattgtcatgtttg-- Spar.....: NaNNtNtttaNtaaNaN-cNtNaNNNN------NaNNN--NNNNtaNNNgtaNNNNNNNatttNNNNNNNaNNNaNNNNaaNNNNNNNt---NNNNNNNatNNNNacNgNNgtNttNN-- Smik.....: NNNNcNNNgNNNNcNcNaNNtNNcNaNNNNNNNNaNtNNNNNNNtaNNtNtNNNNgNNNNNtNNcNNNacNcNNNNNNNNaa--NNtNtNNNatNNtaNNa--NNNttNNNNNNttNaNN Sbay.....: aactgttactgtacaagttttcatgat------aagta--tgtttatgcgcaactaagctttt--tttgtttctagctcctg--c-tgt---cttatttat--tcataactgcgttta-- consensus: *** ** ** * * ********* * **** ***** * * * *** * ***** ** * **** * * * ** * **** ** Scer_spli: BBBBBBB DDDDDD Sbay_spli: DDDDDDDD 2760~2880: Scer.....: ----------c-agcta-------gtgcctctgg---tcttttgagtattcccagcc-c----ttgtttagagg--tcatca-------a--gaatgaacttgaaattagccgtatc-ag Spar.....: ----------N-aNNNN-------NNNNNtNtgN---NNNNNNNagNaNtNNNNNNtNN----tNNNNNNgNNN--tNNNta-------NN-gNaNNaaNNtNNaNNtNNNNNcatc-gN Smik.....: NNNNNNNNNNNNaNaNaNNNNNNNatNcgNNNtNNNNNNtNNNNaaNNNNNNNaNNa-NNNNNNNatgtggNNNNNttaNNNNNNNNNNaNNNNaNaNNNNNNattctatNNNNNNNNaN Sbay.....: ----------ccaaaaa-------attcactttc---tatcaggagaataattag--------aaatatggaac--ttacta-------gttgtacgcacccaccattattta-atg-aa consensus: *********** * ******** * * * **** * ** ** ** * **** * * ** *** * ******** * * ** ** ** * 2880~3000: Scer.....: tggt-attaacctcttctaagaagagcagaaaa---agaaaaaaatc-t-ccgcgacgggga-attgaa------ccccgatc--tggca-cgc---gacaagcgc-ccattctgaccat Spar.....: NNNtNaNtNNNNNcNtcNNNNNNNNNNNNNNgt---gNNaNNNNaNc-tNNNgcNNNNggNaNNtNNaa------cNNNNaNc--tNNNa-cNN---Nactgaagc-tgagt-taaagat Smik.....: gNgN-NNtNNaNNNNaNNNNNNaaNNNNaNNtNNNNNNaaaNNNNtcNt-NNgNNacgNNNa-aNNgaNNNNNNNNccNNatcNNtgNcaNcgcNNNgaNaaNNgNNNNNttcNgaNNat Sbay.....: gtat-attatattcttgtt--caatgtaaaaag---aaaaaaaaatc-t-ccgcgacgggga-attgaa------ccccgatc--tggca-cgc---gacaagcgc-ccattctgaccat consensus: ****** *** * * * * ** *** ************************************************************** *** * * * * ** Scer_spli: BBBBBBBB 3000~3120: Scer.....: taaacta---tcacggaag---aaatatctg--tgaaatgtgac--tcttatagcatactattttagt-tatgaattgtgaaaatcctccctgtcctgc-gttctacaattta--tttag Spar.....: ctattag---ttgaacata---atatggtag--ctacata-------tatgaggaatatgagtcgtca-cattaat-gtatagcaactaccggaatcactattatattggtcataattaa Smik.....: NNNaNtaNNNtcNNNgNNNNNNaNNtNNatNNNNNNNgNtNNacNNNNtNatcNcNNaNNaNNNNNNNNtaNNNNNNNttNNNNNNNNtNttNNNN-gN-NtNNaNNNttNNtNgttNNN Sbay.....: taaacta---tcacggatt---aattatat---tgaaat--------tattcaatgtgcaagctaacc-tattgctattccaatttccacctgtggcac-attggacactaaagacttaa consensus: * **** * **** * ** * * ** * * * * ** * * * * * * * ** * *** 3120~3240: Scer.....: tacttgtttggcaaaaacgtctctcagt-----gccatttac--tttgtaaaaagtgcagact-------acatcgcatcaacggtc------atat-tagg----agccacttct-att Spar.....: tatgaccaatcggcgtgtgttttatatacctctcttatatag--tataagaagatccatactt-------gctcttcattaatactattgttaacctctaattatcaacaatttttgatt Smik.....: NNNgNNNtNNNcaNNNattNNtctNNgNtaNgNgNNNNNNNNNNNNNatNaNNNNtNNNaNNNNNNNNNNNNNNgNNNNtNaaNNcNNNNNNNNNaNNNNNN----NNgNNNNNat-NNN Sbay.....: caaaccgttatggataatgtcttattgttgatgattagtagt--ttggtaagtagtagtaatt-------aagaataagcagttctttcttaaatatataag----agaggtatat-aaa consensus: * * * * *** * * ******** * * * * ** * * * * Sbay_spli: DDDDDD 3240~3360: Scer.....: tttaactcaaca--------tgatcattcaaaaat--gtcgatacact---tgc-attttattgtac--atactagttgga-agaggcagc--gtcgattt---tgctgaa--att---t Spar.....: tttaactcaaat--------tgagcatgcaagat---gtcgatatact---tgcgattttattgcagaga-aaaatatgat--gaggcagc--gttgcttt---caccgaa--att---t Smik.....: NNNNNttaaactatcacggatgaatctttataacttattgaactgaatgactat-atttatttatagtaaaacgaaagtgttgtagattgaatattaactgttggaataagtgattcctt Sbay.....: acacacgctgat--------tggttatatgaaacccaatggttcaacc---cat-agttcatgacattgataataagtgatcaggtatagctcatccccttatatgctaac--atccggt consensus: * ** * * * * * ** * * * * * * * * * ** * Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 3360~3480: Scer.....: ctagtaacttgtagcagcaa--tac---attatatcataaaaataacctgact----tgtaaaagt-tgaaac-cctaactttta---ttatttctttcaatatttttcgatt------- Spar.....: gcaatagatgaaagaaccaa--cgc---attatatggtaaaaataacgtgact----cgaaaaagcagaaagc-cctaactttta---ttgtttcacttggtatcctccatc-------- Smik.....: ctatacatttattcgtataaattagggtagttgatgacgaacattctttaacatgatactaataattttgggtatatgaatacaaacatt-cttattatgataccaatttacacgaagaa Sbay.....: taatttatctttattattgggttaa---attctattatgaaaatttacctactccaatatattagtgttagat-caagactgctgaagtcacttactccaacgtgattagcctcacattt consensus: * * * ** ** ** ** * * * * * ** Smik_spli: BBBBBBB 3480~3600: Scer.....: --agacgtgaaagatgaccaagcacaactaaca-----------aaaaatttgcatcctcata--aaa--agcaagactttttgtatgtcgaaaca-aaattattaaa-----------a Spar.....: --aaacgtgaaaggtgaccaaacacgactggtaa----------aaaaatttgcgtcctcata--aaa--accagagatttttccatgtagaaaca-taatcatcaat---a-------t Smik.....: aagtatagttgtaatcactcattccaacaactatc-atttatcagctagtagccatactactggtaaattatcatatacgatgttagaagatgacataaggtatgagaagcgatcatcga Sbay.....: aagaacgtccgagatgacctattctaacagatatctatagaaacacgaataggtaggtacata--agacaaataaaataagtagtgaattagatcg-aaagtttgaggtttg-------a consensus: * * ** * ** * * * * * * * * * * * * * Scer_spli: BBBBBBB DDDDDD Smik_spli: DDDDDD 3600~3720: Scer.....: aacacgcattaac-aca-gacacgaatttggcatactttcattttactttatat------ctagtgaaaagtagaaat-tgtttaagggaactacttcacagtgacca---ctgatacta Spar.....: aaaacgcattaat-acctgatcag-atctgatgc-ctttccttttaacctag--------ccggtgggaagtaatatt-tgcataaggaaagaaccacacaatgatca---ctgacgcta Smik.....: aataagtggaagctgaaatgcaaggattgataatgtaataggataatgactgacaacatataaaatgacaataaaagcatgtacagtaatatgtagaattacgagttccagttattggat Sbay.....: aaagcgagttcgctacgtgacaagcgttgtggacacttttatcacatccaaactaagatactcgggaggaattcaaag-tgtttgatgtt-cgtttggacagtcatccatcttgttgttt consensus: ** * * * * * * * * ** * * Smik_spli: DDDDDD Sbay_spli: DDDDDDD 3720~3840: Scer.....: gaatatggaaataagaaaag----ttgctaagtagg-agcctaacaatctttttttatatttttcc-atattcct-ttattgt-----catgggtcaagactgtatatg-ttagtgaa-- Spar.....: aaa-atgaaaataagaaaag----ttgctaggtagg-agcctaacaatttttttctattttttttt-tctttcgtatttctgtatttccatgggtaaagaatttaaatg-ttagtgag-- Smik.....: tcctatatcctcgaggagaacttctagtatattcaatataccaaataatattgcctttatcaacaatgaatcccaacaatcat-----ctcgaaattcaccattataccagtaataagtt Sbay.....: ccatactaccacagcaataa----tggtgtatacga-ataacattattcctcatgcaaagcaacca-gagtacatgttgtgga-----tacgggtgatattttaataggatcaataaacg consensus: * * * * * * * * * * * * * * * * 3840~3960: Scer.....: -agt---tttagggttcttgtg---acaaactt-----caccaacata-aac---atggcc------tcttcgaagatccgtagatttt------gcatttttgcggtg-gtttatggat Spar.....: --aa---tttggggttcttgta---acaagctt-----caccaa-gtttaag---atggcc------tcttcgaagatccgtagatttt------gcatttttgcggtg-gtttatggat Smik.....: gaaagcttacatcgtatacaaaggtacacacttgtgcatgctaacatgtgacggtattgctgaacggtctgtttaacgtggtacacgagaagttaaagctcctttaatgtaacgataaac Sbay.....: gaaa---tatataaaatggaaa---acaaaatcatttgtaataatatgcaag---attgctaatta-ccttttgccaactctaaattcatgagaagaaaacctactata-atctatatac consensus: * *** * ** * * ** ** ** ** * * * ** * Smik_spli: BBBBBBB 3960~4080: Scer.....: tcaaagcga-ggcctaaattaacgatcatgtctttg--ctattatatcagagg---gcatatcattgaatttccgatttccaaagggaagaaa-ataa-ataaagttgtgctatttccat Spar.....: tcaaagcga-ggcctaaattaacgatcatgtctttattatttttttataaaagaggacatatcattgaatttccgatttccaaagggaagaaa-acaa-ataaagctgtgccattt-cat Smik.....: ttggcattt--acaaatataagaattcgggccacta--ccctgggcccatagcaaatagacaagccattattatactggctgtactggtcatatgtggcatgaaaaaaacttgctttttt Sbay.....: gtaatattataacactgaataaaaatggaaccttga--actttatcacccaattttacgggtcaatagaatcaaaagtaatagatcgtacctatataacatttagcaaagccttttacgt consensus: * * * * * * * * * * * ** * ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB 4080~4200: Scer.....: gcatccttttttctttcattcaatgacacatacttcttgtagtaggaacaattggt-agttctgatatcgattaagcc-ttctaaaaatgctttatattataaagtacaaatgcaagaag Spar.....: gcattcct-tttctttcattcaatgatacatacttcttgtagtaggaacagttgat-agttctggtatcggttaaaaccttctaaaagtatcttatattatagagtacaaatgcaa-aaa Smik.....: tcttcattaatactacaaccaaaatactaattattgacacctctagattttcagttcaaaaattatatatattatgat-tgataatgtaattgtg-agtttattgttactaagcaaaatt Sbay.....: ctatctctctctttctgattaatatcctgacttgaaccgcttctgcaatctctatt-agctacgatgtagatcaaaaa-tcgcagag----tttgtagtttaacaaagccatttcacatt consensus: * * * * * * * * * * * * * * * * * * ** * * * Smik_spli: BBBBBBB DDDDDDD 4200~4320: Scer.....: tagc-tatggat-gctaaagagc-tggtcgat---------------------------------------------------------------------------------------- Spar.....: tagc-tatgggt-gctaaagagt-ttgtcga......................................................................................... Smik.....: aggcagttctgtttttactaaactccaaaatgaattaaa---acaggagtacaat-gtaccgtgaattaatagtgttttattcaga-atggtaagccctaatttttactatttacttgat Sbay.....: ttgcgtatgaattgataaaaggtgcgatcctttagtgaatttacttgagcatggtagtatcaagactgcatattgcgatccagaaatgctgaataccctaatttttgctgtcacttcatt consensus: ** * * ** Sbay_spli: DDDDDD 4320~4440: Smik.....: tcttcttttaacgtataagatgaccacacgcaattggaa----aatttgctttttcatat-aaaccaagattttttccgcgtagaaaacttccaggtctgacattgtatagtcaattttc Sbay.....: ctcttgacacgtaaaaggtgaccaagcgcgcctgaaaaaaaaatttgcatcttcataagaaaccgaaatttttaaaagaaagaatactttttttaccacatatataaactcttatttatc 4440~4560: Smik.....: tt---cttctcttaagctagtggaaaacagcaattacccaataaaagaattatgcagtatttgg-taattcaacaatatagaaatacaaataagaaaggttgttatgtaggagcctaaca Sbay.....: aaattcttccccatttcttcaccaactaaatcaatgggaaacagcaattacctagaaaatggatcgtgccgtgggttagcttacccatcaacatagaataagaataggctgttaggcagg 4560~4680: Smik.....: tttttctttattctttttttgttctcctgtattgttgtggatcaaaactaaaaacagtggtgagcatttaagcgttattataaaaaggctttaccatgctaaagatggcctcttcgaaga Sbay.....: tacctagcgatttttctcatcttcctctgttgttatggattaggctagcgagcggtaatgaacgatatattttcttgggatagcttcaccatttttgagatggcctcttcgaagatccgt 4680~4800: Smik.....: tccgtaaactttgcatacttgcggtggtttatggattcaaagcgaggcctatataaacgatcatgtcttttctactttttataaagggggcatatcattgaattttccgatttccaaagg Sbay.....: aaactttgcaaatttgtggtggtttatggattcaaagcgaggcctaaattaacgatcatgtctttatttttttaaaaagagggcatatcattgaatttccgatttccaaagggaagaaaa Sbay_spli: BBBBBBB 4800~4920: Smik.....: gaagaaaacgaataaggttgtgttgt--catgcacttctttttctttcattcaatgacacatatttcttgtcgtaataacgaacgatggtttcgatatttgctaaaaaaaaccttataat Sbay.....: taaataaagctgtgctattccgtgcacttctttttcttttattcaatgatacatttctcttgaacaattagtagttttgattcttctacaaaatttctataaaaaaaaaatgctttatgt 4920~4986: Smik.....: a---atgttttataatatacataacaaatgcagatgcagctatggatgttaaataacatgttacct Sbay.....: tatagaatacaaatgcagatgtagttgtaaatgcgagagaacttgtacgtc--------------- Sbay_spli: DDDDDD { alias......: ['RPL26B'] chromosome.: 7 description: Ribosomal protein L26B (L33B) (YL33) end........: 556666 exons......: [(1, 25), (380, 744)] gene.......: RPL26B introns....: [(26, 379)] length.....: 744 name.......: YGR034W plength....: 248 start......: 555923 tdist......: 534270 type.......: ORF up.........: 1 } Scer: 6 donors and 2 branches Spar: 0 donors and 0 branches Smik: 4 donors and 3 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 898), ('Smik', 898), ('Sbay', 898)] ->[('Scer', 1569), ('Sbay', 1569)] ->[('Smik', 1065), ('Smik', 1060)] ->[('Sbay', 564)] ->[('Sbay', 1964)] ->[('Sbay', 2050)] ->[('Scer', 683)] ->[('Scer', 704)] ->[('Scer', 1024)] ->[('Scer', 1216)] ->[('Smik', 1308)] ] [ ->[('Scer', 1379), ('Smik', 1379), ('Sbay', 1379)] ->[('Scer', 1682), ('Smik', 1682)] ->[('Sbay', 1778)] ->[('Smik', 30)] ] 0~120: Scer.....: tgtttaaacttggagtc-aggaaaataatatacgaatgattttaccaacctgatatctaaaat-taaa--tttagaactataacctgctgtc--------------actggcggaaaaat Smik.....: -ttttaagcttatagaa-aataaaacaatatactaatgattc-acacacttaatatctgtaac-taaa--ttgaga-ctagagcgcgttttctttcatca------actttgaaaggatt Sbay.....: tttgtaattttatactcgagaaaaacaatatgtaaa-aacttaggctagttgaaatcgataaggtaaaggctgagaatcgtagtactgtatctatttatacaaaaggtatagataggcat consensus: * *** ** * * **** ***** ** * * * * * *** ** **** * *** * * ** * * Smik_spli: BBBBBBB 120~240: Scer.....: acgccctcaggtttgacctagtagagctgaacatcttttcactgctttctgtatcctttatttattggagcttccgaaac-ttcccaagaaaagtgaagaaaaaaccaggaaaatcaaaa Smik.....: gagttctcgggtttggactgacaaagttgaacatgctcttactgcattctgtatcctttacttattggagcctccgaagg-ttcgcaaaaaaag--aaaaaagaacagagaaaagagaaa Sbay.....: tggcctttgggattgaagtaactgagctgagcatggatctagcgtgtcctgtatcctttatttattggattctccgaaagatccccaagaaaaaatacaaaatcagagaataagctttat consensus: * * ** *** * ** *** *** * * * ************ ******** ****** * * *** **** * *** * ** * 240~360: Scer.....: gacatgacgcatataatgtacaccttttttttttcgcggccaaaaatt-taacctactcatctagatcagtggttggtagagcagtattccgtcatttttcatgtccaggttcgaagctg Smik.....: gtctaaacttatatatttaattctgctggattttcgc--ttcaaaatt-ctacccatttagtgtagtggttgctggactgaggattttccttcttttttacgtgtccgggttcgatgcct Sbay.....: gtctt-atacgtgattggcatatttctaaatttccccgaccgaaattggctgcccatttagtgcaac---tggttagcacacgcattttttatcagcgNtggcggttaacgacgatac-- consensus: * * * * * * *** * * *** * ** * * * ** * * * * * * *** * 360~480: Scer.....: acctggtattatccggttttttttct----tgttgaccaataggaaaaaaaaaaattaaaataaagtcacagaaattcaatgaatattataaatttttcttgtttgtttccctagttgtt Smik.....: accccataatagttggttttatttctctagtgttgcccgatggagcaaaaata---tagagtttagacacagcatttgacggtgtctcaacgatattcctagt----ttctcaagattcc Sbay.....: acctaat--tttttgggcacttttct------ctgccc--tcgaacaagtataccttcagcgaaaggtgcgtcggagtatccagtgt-ggatatactactggc----atctggacaagtt consensus: *** * * ** ***** ** ** * * ** * * * ** * * * * ** * ** * ** * 480~600: Scer.....: atttttataaaaaaaattcttgtagacaataaaataagaaatgcccattttgtaacttagcgaaagatgcccagtacatcccttttacacccgtgcattaaaggtgtttgggtttaatag Smik.....: tgctcaatgaaatgtatatctg-------------agtagttcatttttttgcgcatgagaaaattcttcagacggtggtatttttacatccggacctccctggtgtttgggttcaataa Sbay.....: cctt-----------gtttttg-------------aacgattaattcttttacc---------aacatcc---gtgcctcactagtatgtgtgggtgctcatcgaaac-aaatctgct-- consensus: * * ** * * **** * * * * ** * * * * Sbay_spli: DDDDDD 600~720: Scer.....: gagct-ttatcatatctctttgattttttttctgctgtcctcggcttgaggg-actcacagagatctggaaattttcagat-tgtcagtg-cttaggatgggttgtcagtagacggtggc Smik.....: atgttatcattcaggttcctctttttcttttttcccgtgttttgctcgaggg-actcaaacgaatctggaaattttcagatgtgagggtgtcttagtatggactatcaacagatggtggc Sbay.....: gtttttttttgaaactttttttttatctcggcaatcgagttcagctgggggggactcacgcgggtttgggaattttcaaatgtcaagagg--ttagtatggccaggcaatagatggtggg consensus: * * * * * * * * * * *** * *** ***** * *** ******** ** * * **** **** ** *** ***** Scer_spli: DDDDDD DDDDDD 720~840: Scer.....: cgccgtggatgggaaatctcatac----gtttacacacatagtgtttggaaatt-aatagtagcaatagctatctggctactgttttaaagtattagcccgtt--ctcagtgcttctttt Smik.....: cggtgtaggtgggaggtcccatac----gtccacacacatattgtttgaaactt-attaggagcaaaaggtattttgtcatcgatttaaaggtttagcgcattaatataggctattttct Sbay.....: cgctctgggtgggaagtcccacacacacgtttacacagatagcgtttgaaacttcaatgggaataatagctttttggctacaaatttgaaggttttggtcata--tttagagcctttttt consensus: ** * * ***** ** ** ** ** ***** *** ***** ** ** * * * * ** ** * * * * * *** *** ** * * * ** * ** * 840~960: Scer.....: ttaaggaataacaacggcaagaccaaagatatatcaaatatggctaagcaatctctaggtatgtttggaggatacgaataacgatagaaaacatgagtgaatttccgtccacgaaaaaat Smik.....: tcaaaaagcagcaacggcaagaccaaagatatatcaaatatggctaagcaatctctaggtatgttaggaggatataaattagcgtaaaaagcatgagtcaattcccatccacgtagatat Sbay.....: taaaagaacagtaacggcaagaccaaagatatatcaaaaatggctaagcaatctctaggtatgtttggatgatacaaatgagcgtagaatgcacgaaagaatttccatccagttagatat consensus: * ** * * ************************** ************************** *** **** *** * ** ** ** ** **** ** **** * * ** Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 960~1080: Scer.....: gttaacat-aaaatgcaagagaacaattaatcgaataATGTTAAAT-TATTGTAA-AACAATGTGTATGAtgaggaggaatgtacctaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaa Smik.....: attgctat-aaagcgtataagcaccaatagttgg-tagtgttaaat-tattttgatgattataaacatcactagcagtcaagt-tatcagccaaataactgttaagtatgacaaggttgg Sbay.....: gaagataccaagaaacgagcagatgaaaaaatgattacttctaaatgtggagcagagttggcgaaaactataagcaaccagat-----gatcaaaaaactgttttttgtagcaatttgaa consensus: * ** * * * * ** * ***** * * * ** * * * **** ** ** Scer_spli: DDDDDD Smik_spli: DDDDDDDDDDD known....: >======================================================= 1080~1200: Scer.....: aaa--gaaacagcttttgcatattca----atccaggcatagg-gcgactatttagcac--tca-acgatttttaagcttgtgtattgctgacataaattccggc--tttagaatccaat Smik.....: cca--ga--cagccgat-cattctaa----tatcagagatgtctatttttgtttattatggtca-aaaatgctggcatattaaagttcaatataaaaaagcatga--ttacggagagaaa Sbay.....: ccactaagccgatatttaggtatttagaggttttcctaatacttcctaatgattctagtgtacatatgagtgcgtcacttaagaattcaagaatgaacaacatgcggttccgaatataaa consensus: * * * * * * * ** * ** ** * * * ** * ** * * ** * * ** 1200~1320: Scer.....: attgaa------aaacgtgagtacgcagagg--agatagaagaaaagta--ggaagttaccgt-ttatattg-----atttg-tgaaatgcatactccg-ttggatgtg-gggcaacat- Smik.....: aagtaa------aaaggcaagaaatcaatacttgaatttgtgactagtg--atagaataatct-ttacattgttg--atttaatgaaatgtggacctagattggagatgtgagtaacgtt Sbay.....: gaaagattaatgaaaagcaagaaagtgctgccagaacttctgatcgttacggaaaaccaatttgtttcattataatggttttagtaaaccggaccacaacccaaatgtc-gagttatatc consensus: * *** * ** * * ** * * * * ** *** *** *** * * * * * * * 1320~1440: Scer.....: --AGATTTAAGTG-TGGA-TGAAAATTATGTGCTCATTGTGAAAAAAAAGTTTTGCTTTTACTAACAAATTTTTTTATTATTTGTTTTCAATAGACGTTTCCTCTGACAGAAGAAAGGCC Smik.....: acaatagtaaATG-TGGAATGAGGAC--TGTGCTCATTGT--AAAAGAAGTTTTG-TCTTACTAACAA--TTTTTTATCTTTCGTTTTTAATAGACGTTTCATCTGACAGAAGAAAGGCC Sbay.....: ataatatcatatgctggaatgaacat--cgtgcttactcaatgtaaacaagtttg-ttttactaacaattaatttttttaatttattttaatagacgtctcctctgacagaagaaaggcc consensus: * * ** **** *** * ***** * * ** * **** * ********** **** * * *** ********* ** ****************** Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ============================================================================================>= 1440~1560: Scer.....: AGAAAGGCTTATTTCACTGCTCCATCCTCTGAACGTCGTGTTTTGTTATCTGCTCCATTATCCAAGGAATTGAGAGCTCAATATGGTATCAAGGCTTTGCCAATCAGAAGAGACGATGAA Smik.....: AGAAAGGCTTATTTCACTGCCCCATCCTCCGAACGTCGTGTTTTGTTATCTGCTCCATTATCTAAGGAACTGAGAGCTCAATACGGTATCAAGGCTTTGCCAATCAGAAGAGATGATGAA Sbay.....: agaaaggctcacttcagcgccccatcctctcaacgtcgtgttttgATGTCTGCTCCATTATCCAAGGAATTGAGAGCTCAATACGGTATCAAGGCTTTGCCAATCAGAAGAGAAGATGAA consensus: ********* * **** ** ******** ************** * ************** ****** ************* ***************************** ****** 1560~1680: Scer.....: GTCTTGGTTGTTCGTGGTTCCAAGAAGGGTCAAGAAGGTAAGATTTCATCTGTTTACAGATTGAAGTTTGCTGTTCAAGTTGACAAGGTCACCAAGGAAAAGGTCAACGGTGCTTCCGTT Smik.....: GTCTTGGTTGTCCGTGGTTCCAAAAAGGGTCAAGAAGGTAAGATTTCATCTGTTTACAGATTGAAATTTGCTGTTCAAGTTGACAAGGTCACCAAGGAAAAGGTCAACGGTGCTTCCGTT Sbay.....: GTCTTGGTTGTTCGTGGCTCCAAGAAGGGTCAAGAAGGTAAGATTTCTTCTGTTTACAGATTGAAGTTTGCTGTTCAAGTTGACAAGGTCACCAAGGAAAAGGTCAACGGTGCTTCCGTT consensus: *********** ***** ***** *********************** ***************** ****************************************************** Scer_spli: DDDDDD Sbay_spli: DDDDDD 1680~1800: Scer.....: CCAATTAACTTGCACCCATCCAAGCTTGTTATCACTAAGTTACACTTGGACAAGGACAGAAAGGCTTTGATCCAAAGAAAGGGTGGTAAATTGGAATAAactagctcgactttaacatag Smik.....: CCAATTAACTTGCACCCATCCAAGCTTGTTATCACCAAATTGCACTTGGACAAGGACAGAAAGGCTTTGATCCAAAGAAAGGGTGGTAAATTGGAATAAtctaactcgacttcaacatag Sbay.....: CCAATCAACTTGCACCCATCTAAGGTTGTTATCACCAAGTTGCACTTGGACAAGGACAGAAAGGCTTTGATCCAAAGAAAGGGTGGTAAATTGGAATAAactaactcaaatttaatatag consensus: ***** ************** *** ********** ** ** ********************************************************* *** *** * ** ** **** Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 1800~1920: Scer.....: atcatacaaaaaatacaataaataaatcctgtgttt-cttttatgtatattttttatca---atttcaatttagtttagttta----gtttcttta-aaaataaaattgtaatttctcac Smik.....: atcgtacaaaaa-tacaataagtaaatcctgtgttt-cttttatgtatattttctatca---atttcgaattagtttagttta----gttt-taaa-aaagaataattgtaatctctcgc Sbay.....: atcggacaaaaaatacaataaatagatccagttttttcttttatatatattttttatcatcaaattcaatttagtttagtttatttagcttttaaagaaaataaaattgtaat--ctcgc consensus: *** ******* ******** ** **** ** *** ******* ******** ***** * *** * ************* * ** * * *** * ********* *** * 1920~2040: Scer.....: attctgccttcgggtctcaagggctggttggtagacgaatgcgcttgtttctagctgagcggcagatgcatgaattcaatgcaagaaaatgagaaaacttccaatattaaaatgtgattg Smik.....: actttctttctaccccataggcgctactaaatagatgaattagctcgcgcctcactgagcagcag---tggaaattggatacaagaaaa-gaggaatattataacattaaagcgtgatta Sbay.....: acttttctttt---tcgttggtgccagactgcat-tgaatgagcgtatgtgt-gtatagcgcaag-----tgaagtaag---aagggataaaaaataaatgtgaaattaatacgtaatta consensus: * * * * * * ** * **** ** * *** ** ** * *** * * * * * ***** ** *** Sbay_spli: DDDDDD 2040~2160: Scer.....: ttaattattagtatatttatgacaatatatatatgtacatagggtgattatgaagatgagta-agatgcgaatggatatgaggatatgaatcttttta-gagacaatgaagatgcaaaga Smik.....: tttattatttgtataatttgggcgttatatacatg--------gtgattatgaagactgacg-agatgcgaatggatgtgaatacaaggctttttttttgggatagtgaaaaggaagaag Sbay.....: cttattattagtatgctgatggctgtatacacatg--------atagttatggaactgaaagtggatgtagatgaatatagaaaaatgagatttat---gaggtacttggaaggcggggg consensus: * ****** **** * * * **** * *** * ***** * **** *** ** * * * * ** * * * * * * * Sbay_spli: DDDDDD 2160~2195: Scer.....: agtagttaagcacattgacctcagggttg------ Smik.....: aggagttaagcacattggctttaaaatcg------ Sbay.....: ag-aactagatacattaatcgtcaggtgtcgttcg consensus: ** * ** ***** * { alias......: ['RPS23A'] chromosome.: 7 description: Ribosomal protein S23A (S28A) (rp37) (YS14) end........: 727725 exons......: [(1, 65), (386, 758)] gene.......: RPS23A introns....: [(66, 385)] length.....: 758 name.......: YGR118W plength....: 252 start......: 726968 tdist......: 363211 type.......: ORF up.........: 1 } Scer: 2 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 406)] ->[('Scer', 559)] ] [ ->[('Scer', 97)] ->[('Scer', 392)] ->[('Scer', 851)] ] 0~120: Scer.....: gtcggtcgcactagacttttcttctcactgtcacttacctgtttgaaatcatgtcctttttttttttgccattcttatacattttctttccttctgaaattaactgtacacccataccct consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 120~240: Scer.....: atatacacccataccctatttttaaatataaaaagtaaacttcattttgaaagaccactctgcatcagcacgcgggctctggaaggaagaaatgacgtttcggcggaataccctttcaga consensus: ************************************************************************************************************************ 240~360: Scer.....: aggtctgctcttgtggctggttcatgggagacacccagcggagctcctcccgagaaaggccccttcatctctgccgattgctgacggaaagcagtagcggaggtttgagttctctacgcc consensus: ************************************************************************************************************************ 360~480: Scer.....: gagagtacactgccgtaatatcacaatgtttcgactaacggttacagtacgttaaattagatactgcctatgaattgacatattagataatgtcaaattttacaaaaacctaagacaaca consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDDDD 480~600: Scer.....: ggaaataaacaaagATGGGTAAAGGTAAGCCAAGAGGTTTGAACTCTGCTAGAAAGCTACGTGTCCACAGAAGAAACAAGTATGTTGACTATTTCAAAATTAAAAAAAACTATCAACCCC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >======================================== 600~720: Scer.....: CTATTGTGATATCGTTTTAGGTGAAGGAAATGTTGTGAGCTCTGGAGTGATAAATTTATCAAGTAACATATCCTGGCGCAAATCAGTTTGGAGAGGCTTAAAATGACACGTCACAGTGAT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: AAAAAGTAATGAATAGTGAACGGTCAGCTTCGGCCATTCTTCCCAATCTATAGTGTGGAAAATAAACCTTTTCTTCCCAAAATAACTCAGAAAGTCACAGGAGGCCGTTTTTTACAACGG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: AATCATTTTTTTACTAACAGTTTTTTTTTATTATTATAGCCGTTGGGCCGAAAACAACTACAAGAAGAGATTGTTGGGTACTGCCTTCAAGTCTTCTCCATTCGGTGGTTCTTCTCATGC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: =====================================>= 960~1080: Scer.....: CAAGGGTATCGTCTTGGAAAAATTGGGTATCGAATCCAAGCAACCTAACTCTGCTATCAGAAAGTGTGTTAGAGTTCAATTAATCAAGAACGGTAAGAAGGTCACTGCTTTCGTTCCAAA consensus: ************************************************************************************************************************ 1080~1200: Scer.....: CGATGGTTGTTTGAACTTTGTCGACGAAAATGATGAAGTCTTGCTAGCAGGTTTCGGTAGAAAGGGTAAAGCTAAGGGTGATATTCCAGGTGTTAGATTCAAGGTCGTTAAGGTCTCTGG consensus: ************************************************************************************************************************ 1200~1320: Scer.....: TGTCTCCTTGTTGGCTTTGTGGAAAGAAAAGAAGGAAAAGCCAAGATCATAAgcacgaaagttatcctctcgaggactacattgtttttgtaccttaatgtatctctttattcttccaga consensus: ************************************************************************************************************************ 1320~1440: Scer.....: aagttccttctaatttcttattaggaatgggagagaatcacatcaatattttctctttaatagaatgtataattcaatagaaaaaaacaacataatttgcactttattttgatgctgaga consensus: ************************************************************************************************************************ 1440~1560: Scer.....: aaagttttatagtgaatgtctgcttcccttgggttgaagttctgttcatatactaagttggttaataatgctatatatgtaatagatcgatctttatacaattcagtcattgatttaagt consensus: ************************************************************************************************************************ 1560~1567: Scer.....: aacctga consensus: ******* { alias......: ['QCR9', 'UCR9'] chromosome.: 7 description: 7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex end........: 859471 exons......: [(1, 3), (217, 414)] gene.......: QCR9 introns....: [(4, 216)] length.....: 414 name.......: YGR183C plength....: 138 start......: 859058 tdist......: 231465 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 427)] ] [ ->[('Scer', 94)] ->[('Scer', 613)] ] 0~120: Scer.....: attcaagccctctactatgttttatagttgacatatttgtatataaaaacttatacattattaaacatttgcgcgtcgattgacttttatttattattaacaaagaagtaataccaacct consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 120~240: Scer.....: aattacaaatacttcgaagtgactatcataagtttccttatctagcgaaggcaacttttgaactccccagttgttaatatgtatcattatacacgacccaatcaaacgcggggaagtcaa consensus: ************************************************************************************************************************ 240~360: Scer.....: tgccgaaagaattctaggacctaaaagctgctcaatccttgggcctttccctaatgacatcccctctcaaactttagcttagcagttgtatttaatgtcctgtcacggatagtcaataat consensus: ************************************************************************************************************************ 360~480: Scer.....: cgttgaaggttgattttcatatccttcgcaatttcgtaaagcaacaatagcaatacggactaaaATGGTATGTTGGTGTGTGTGTGTGCTGCTTCACATTTCAGGCTAAAAATGTTATCC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >==================================================== 480~600: Scer.....: GTGGAATCTTCCTTAGCCAAGTATCATGGGCTTTGGAAATTAGTTTCCCACCGATGAGCGCAACGACTTAGCGAAGCTTATGAAATTGGTGACAGCAGCTCTATGAATATGTTCCATGCG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 600~720: Scer.....: TTTCCATTCAGGTTACTAACAATGCATAAATTATGAGTAGTCTTTTTCATCACTATATAAAACCTTTTTCAAACGAAACGCTGTTTTTGTTGGTACTATCTTTGCAGGTGCCTTTGTTTT consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================>= 720~840: Scer.....: CCAAACTGTATTTGATACTGCTATTACTTCATGGTACGAGAATCACAACAAAGGAAAATTATGGAAAGATGTCAAGGCTCGAATAGCTGCAGGCGATGGAGACGACGATGATGAGTAAac consensus: ************************************************************************************************************************ 840~960: Scer.....: gctgattatgtcacacatatacgtgcaaacgctctctctctctctcaagctatataagtggcactcgtcttatttattatttttttattttggctggttgttcatgttcaacccaacctc consensus: ************************************************************************************************************************ 960~1080: Scer.....: ataaaggcactcaacttcatattttgacacaaatctatgtctcgccaaagcgcattcaaatttcagaatggaaatagacacgaacgagcctgtctgtcagatgttcacaaaatccttatt consensus: ************************************************************************************************************************ 1080~1200: Scer.....: ataattttatattctactaaaggaaaaagagaattaggaaaaagaataactcattttatgtatatacatatattttgtacatatctataccaagcaagtatagtgcaatactgttcttcg consensus: ************************************************************************************************************************ 1200~1296: Scer.....: acgttattaaacgtaatagcattttcttggtatcctttgaatcttatatacaagtacgagtacatactgcgcagtaaattgatcctgatggtgtgt consensus: ************************************************************************************************ { alias......: ['RPS0A', 'NAB1', 'NAB1A', 'YST1'] chromosome.: 7 description: Ribosomal protein S0A end........: 921783 exons......: [(1, 90), (546, 1214)] gene.......: RPS0A introns....: [(91, 545)] length.....: 1214 name.......: YGR214W plength....: 404 start......: 920570 tdist......: 169153 type.......: ORF up.........: 1 } Scer: 6 donors and 3 branches Spar: 7 donors and 3 branches Smik: 5 donors and 3 branches Sbay: 6 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1357), ('Spar', 1357), ('Smik', 1357), ('Sbay', 1357)] ->[('Scer', 2507), ('Spar', 2507), ('Smik', 2507), ('Sbay', 2507)] ->[('Scer', 535), ('Spar', 535)] ->[('Scer', 1785), ('Spar', 1785)] ->[('Smik', 128), ('Sbay', 124)] ->[('Spar', 1771), ('Smik', 1771)] ->[('Sbay', 0)] ->[('Sbay', 273)] ->[('Sbay', 2692)] ->[('Scer', 1088)] ->[('Scer', 2861)] ->[('Smik', 1396)] ->[('Spar', 30)] ->[('Spar', 240)] ] [ ->[('Scer', 1806), ('Spar', 1806), ('Smik', 1806), ('Sbay', 1800)] ->[('Scer', 313), ('Spar', 313), ('Smik', 313)] ->[('Scer', 1323), ('Spar', 1323), ('Sbay', 1323)] ->[('Smik', 776)] ] 0~120: Scer.....: gttcgaagtggt----gaaaagtgctgactgtctattacatacttttacagggtttattattatagaatgaaacaggcaaggta-tcttatc-cctttat-tatgaaaa-ctat--atat Spar.....: atttgcggtgatag--aaaatgtactgaatgtatgctacattcttctacagaattgattacttcaacatat-----gcagggtacatttatctcatctaattgtgaaga-gtat--atat Smik.....: atttgtagtggcta--aaaaagtacagaatgtttactgcgatcctctacaggattggccattttaacatta-----gcaagatt-gttcatc-catctatatgtcaaaa-gtatttatat Sbay.....: gttcgttgctatgatatagaaatgccagatttgggttgtagtcgtttagagtcaaaataagaaaaaatcggcatatagatgagt-ttctatc-tatatatctgcaagagtatatatacct consensus: ** * * * * * * * * * * * ** ** * * * * *** * ** * * *** * * Spar_spli: DDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: acgcataagtcttttgc--------------tgcatgataagccccttcccaaga---atatgacaacctcttattgttctt-----ttcaccaaaga---tccacggaactcatcttta Spar.....: acgtacaaatcttttgc--------------tgcatgataagccttttctcaaga---atatgacaatgttttattgtttttt----cccgtcaaaga---tccacggaacttatttttg Smik.....: acatacaagtatgccac--------------cgcatgataatattttcccgaaaa---aggt--caacggttt-ttgtttct-----cctaccaacat---ttcatggatctaatcgttg Sbay.....: gcacgcatgtacgctacaattatccgaatcatgcacaaaaatctatttttgaaggcttatgtgcgtatatgccattattcgttgggttccgtcacattatttccacggaagtcacaactg consensus: * * * * *** * ** * ** * * * ** ** * ** * ** *** * * * Smik_spli: DDDDDD Sbay_spli: DDDDDD 240~360: Scer.....: gcaagtgaggcttgaaatatcacagatatcattgtgaataccgcattgagcagattgttgacagcgggcatcttacta--------acaggcgcaatctaaa--gaagccgc-------- Spar.....: gtaagtgaggcttgaaatatcacaaatgccagtgtgaatgccgcatagagcagattgttgacaacgggtatcttgcta--------acaagcgaagtgtaaatagaagccgc-------- Smik.....: ataagcgaggcttgtaatatcgcagatgccagctttagtggtgcacaaagcaaataactggcaactggcatcttgcta--------acgcgccaaatgtaaa--gaaatcac-------- Sbay.....: gcaagtgaggcttgtaaaaatataggt--cggagtgagtgccgcacggacccgtctgttgacaaggaaaaacctcccagagaagagaggagaggaatctcacttgacgcgacatgtagag consensus: *** ******** ** * * * * * * * *** * * ** ** * * * * * * * * * * * ** * Scer_spli: BBBBBBBBBBBBBBB Spar_spli: DDDDDD BBBBBBBBBBBBBBB Smik_spli: BBBBBBBBBBBBBBB Sbay_spli: DDDDDD 360~480: Scer.....: ----gaaaaaaaaaaga--acacgctaaacgattca-----------------cccatgccagccaa------gtgtagatttgtttgta-gaggaaaacagttgatgagcaatt-taca Spar.....: ----gaaaaaaaaaaaacagcatgctaaacgatcca-----------------cctatgttagctaa------gcgtagctttgtttgtatggaagaaacagttgatgagcagttttaca Smik.....: ----gcaataaaacaac--aggctaaacacaatcta-----------------ttcatggtagcttt------gcgccaatttgcctgtttgaagaaaacagttaatgtgtggttcttta Sbay.....: agaggagaccggaaaaacaacatgctaaacgatctaattacaatggagaaagaccaatgttaaccttcgacccatatagatgcgttccctataaaacagcaggctgtgcgtggttatgca consensus: * * * * * ** ** * *** * * * * * *** ** * ** * * 480~600: Scer.....: gtgtttttttatctta-gtaatattcatcaaaattcataggaaatagtcaatgatgcatgtctgaaaacaaaacgacctatataccttattgtggcttgtaa-agtttaaact-----ta Spar.....: atatttttctatttcg-gtaatctctagaaggatccataggaaatagggaaagatgcatgtctaaacatggcacaacatatataatttatcgtggcttgtaa-agtttaaatc-----tt Smik.....: acatctttctattttaagcattttttttcagagagtgtacagaacaagcgaagacgcatatttaaacgtaatgtaacttacgccatttattgttgcttgtaa-agtttaaatc-----tt Sbay.....: acattatcctatttttagcagtatttcgagaacaacgtgtt---caggtataaatcgaaatctaaatatatcct--ttcacatagcttatcgaacgagggaatagctcgatcccttttta consensus: * * *** * * * * * * * * * * * ** * **** * * ** ** * * * Scer_spli: DDDDDD Spar_spli: DDDDDD 600~720: Scer.....: aaaataaactttctttttgaatgatagatatttccgcttttggatgcgct----tcacaagaatagaa----------gcaaaaagtccggttaaaattgaa--atat-gataaaaaccc Spar.....: aaaataaactttttggac-ggtgatgaatatatcc-----cggaagcacttcccctttaaaaacg-ga----------gaataaaattcgatcgacaatcaa--aatgaaataaaaaccc Smik.....: aaaataaactctagat---gatgacaattatatctccgttcggacgcgctcttctttcaaggatgcga----------atataaagtttggccaaaaatcga--ga---gataacaaccc Sbay.....: gaaataaacttttcggaaaagtaagaaaactatccat-ttcgggtattttttttttccctgaatctgatacagcgagcgaagaaagactgggtttgggccgaccattgaaataagcaccc consensus: ********* * * * * ** ** * * * * *** * * **** **** 720~840: Scer.....: aaacatattaaaaaacccagacat--------aaa---------gaaaaaaactttgaaaaaaaaagt-------attatgccgctgagcgcg---ccacgtt--aaaa-gctcgaattc Spar.....: atacatatt-agagacccagacat--------aatggaattt---atgaaaacc---aaaagcattat-------attttgccgctaagcgtg---cccatgt--aaaaagttcggcttt Smik.....: aaacatattgagagacccatacat--------aatattatttccgagaaaaaatattattaacattgt-------gtt--gccgctgagcgtg---ccgggct--caatcattcagcttc Sbay.....: aaacatgtttggagacccagacatctggatttaggatttttttccgtgaaatatataattattttggttgttcctggtttgccgctgagcgtgttgccggcatgaaaaaagttagaattc consensus: * **** ** * ***** **** * *** * * * * ****** **** * ** * ** * ** Smik_spli: BBBBBBB 840~960: Scer.....: ttcgcattggtagta----gcgcaaagtccaatgagcgcacctcaagtgaga-aacgcaggcccagagat----tctccaggcaggaaggaattgggacagatcctgcctggagggatgg Spar.....: ctggtattggcagtaactggtgcacaaaccaataagcgctccctaggtcggc-gacgcaggctcagagagactctct-tgggaaggaggagattggaacagaacccagcc-------tgg Smik.....: ttcgcactagcaccacctggcgagggatccaataagcaccttctaggtggac-gattcgaatgtagagacatcctccctggcgagcaagggattgaagcaaatcccagcc-------tga Sbay.....: ctgttaacatcgacg----gcccaggatccaatgggccctgccggggcccattggtccaggcagacaagt----tcccttgctgggcagggaactgaataggtcccagcg-------ggg consensus: * * * ***** ** * * * * * ** * * * * * ** * * 960~1080: Scer.....: aggaatttacttcgtaggctggaacaggctcatctcagccaacgattgtaaatgtgc-agggccatcgttacaatcctgcgcaccctaccatg-gataccag-----aatcccgtcgtgt Spar.....: gggaatttactctgtgggctggaataggctcatctcagccgacgattggaaacgtgc-agggccatcgattcaatcttgcgtactctccca-gagataccag-----gatcctgtcgtct Smik.....: ggggacctgttctgtaggctggtgcaggctcatgccagccaacgatgagatgcgtgc-aggttcaccgtatcaatgttacgcactcttccccgaggtaccaggcaggatacctatcgt-t Sbay.....: aaaagatgatcccgtaggtgggtgcatgcttggctcaggcaacggatggaaccgcgctgggaccatcgttacgatcttgcgcactctcc---gagatgccag-----gttagtgtcgtct consensus: ** ** ** * *** *** * *** * * ** ** ** ** * ** * ** ** ** * * * * **** **** * 1080~1200: Scer.....: tcccaattgtgagtagtacagtggcctgctgccgggcagatagtagcagggcaggacacttgccagatcccgtagcaaggatgcttataatatatcgaaatgtagcattgttagtttact Spar.....: tcccaactgcgagtagcgtagtggcctgctgccgggcagacagtagcaaggcagaacacttgccagatcccgtagtaaggatggttataatatatcgaaatgtagtaatgttagtttact Smik.....: tcccaactgcgagtacagtagtggtgtgttgctaggcagatagtagcagggcagaccacttgccagatcccgtagtaaggatgcttaacacatatctaaatgtagtattattagtttact Sbay.....: gcctaaccgcgagtactgtgatggtctgctgccaggcagctagtagcagggcagaacacttgctgaatgccgcagcaaggataatgaaaatatattgaaatgtaatatggttagtttact consensus: ** ** * ***** *** ** *** ***** ******* ***** ******* ** *** ** ****** * * * **** ******* * ********** Scer_spli: DDDDDD 1200~1320: Scer.....: tcgtaaactgcccttgtagagt-gaggtatagcttagaaaata---gcaaactaaatagagagcgaaATGTCCTTACCAGCTACTTTTGACTTGACTCCAGAAGATGCCCAACTTTTGTT Spar.....: tcgtaaactgcccttgtagtac-gctgaatagcttagaaaata---gcaaactaaatagagagcgaaatgtccttaccagctacttttgacttgactccagaagatgcccaacttttgtt Smik.....: tcgtaaactgcccttgcaatac-gctgaataacatagaaaataatagcaaactaaatagagagcgaaatgtccttaccagctacttttgacttgactccagaagatgcccaacttttgtt Sbay.....: tcgtaaactgcccttgtcatatagtcgaaaagctataccaata---gcaaactaaataga--gcgaaATGTCCTTACCAGCTACTTTTGACTTGACTCCAGAAGACGCCCAACTATTGTT consensus: **************** * * * * * **** ************** ******************************************* ******** ***** 1320~1440: total....: ====== Scer.....: GGCTGCTAACACTCACTTAGGTGCTAGAAACGTTCAAGTATGTTATACTCATTCCCGAT-TATATAATAGAGTAAT--GTGTGATTGAAAACAGTTCGAGTGAAAGAATAGCCACAACCA Spar.....: ggctgctaacactcacttaggtgctagaaacgttcaagtatgttatactcatccccgat---tataaactaataat--gtgtgattgaagatagttcaaatgaaagaattggcccggcca Smik.....: ggccgctaacactcacttaggtgctagaaacgttcaagtatgttataaacattcccaaaatatatagaaaaacgtt--gtatgattgaagatactttaag-aaaagaattgtctcaacca Sbay.....: GGCTGCTAACACTCACTTAGGTGCTAGAAACGTTCAAGTATGTTGCACTCCACTCCCAT-TATATAGCATAACCGTTGGCGTGATTGAAGATACGTTAAG--AAAAAATTGACCCAACCC consensus: *** **************************************** * * ** * **** * * * ******** * * * * *** *** * * * ** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: DDDDDD DDDDDDDD Sbay_spli: BBBBBBB DDDDDD known....: >================================================================================== 1440~1560: Scer.....: ---GGTTTCCCGC--CAACCAAACGGAATGCTGGGATAGCATTTTTCAGGCTGAATA--AGAAGAGAAATATATGAACAATCATTAAAACAGTTTGAAACTCCAGCTAATTATCAGCGAA Spar.....: ---gatttctcac--caactgaatggaatgctggtatggcatttttcgaacggaatagaagaagggaaatgcaagaacaatcattaaaacaatttaagtttc--cttaatcgtctgcaaa Smik.....: aagggttccccccatcaactgactggaatattgatatagcacttttcgaacggaata--aagaaggaaaaataagaccaaccattaat-cagataaaaactc-acttgattatcagcaaa Sbay.....: ACCACATGAGTAAAAATACCGATTTATGTTACTGTCCAAAAGCAATGCGGACGAATA--TCAAATAGATTATCAGGAGAACAGAGAACCAACAGCAATACCCGATTGAAAAAACATACCG consensus: * ** * * * * ***** * * * ** ** * * * * * known....: ======================================================================================================================== 1560~1680: Scer.....: TATTTTGCCAATAGACTTTCTAATTGTATTATGTTATTAAATTTTAAATCGCTAATGAAAAAAAAAAACAAACCTTTGGTATTAA------ACCTCTTTCAATGAAATCAATTAATTCCG Spar.....: tattg-cccaataaactttccaattgtattatattgttgaattttaaatgaacaatggaaacgaaaagcaaatctttggtattattattaaacctccc-caatgaaatcgataagtactg Smik.....: tattt-gccaatggactttctgattctaacttatcgt-acgcttttatgaactacaggtcaaggaaaacaatcctccggtattactattatactgccctttttgaaattgataagttatg Sbay.....: GACTTTCCCAATGCCCATTGAAAATGTATCATATCTCTAAGTTTCAA-----CGATGAGCGAAAAAAA-----CTTTGAAAATACCATTAGATTTCCCTCAGTAAAAT-AATCTAGGCCG consensus: * * ***** * ** * * ** * * ** * * *** ** * * ** * * * **** ** * known....: ======================================================================================================================== 1680~1800: Scer.....: GTACCTATTCTTCCGACGCTGTTAGCCAACTAT---AAATGCCAT----TTTTTCATAGTACATTAATTTGAATCAG-TTGATCATTCACAGCATATACC-AAGTGTACGTTTTTG-AAT Spar.....: gtacctaccttgccaaggctattagtcacctat---aaatgccat----ttttccaggccgcattaattcgcatccg-ttaatcattcacagcatgtgcc-gagagtacgtttttt-aat Smik.....: gtacctgttttcaaagattaacaagctacatgt---taagggggt----tttc-caagacacactaatctgtatccg-ttcatcattcacagcatgtacctaaaagtacacttttacagt Sbay.....: TATCCCGCCCCCATGAGTGCCTAGGATAGACGTTCAAAACTGCATCTCCTTTCCCAAGACATCCTATTTCGTATCCGATTAATCACCCACAGCAAGTGCC-GAGAATAAGTTTTCC--TT consensus: ** * * * ** * *** ** ** * * *** * ** **** ******* * ** * ** *** * Scer_spli: DDDDDD Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD known....: ======================================================================================================================== 1800~1920: total....: ======= Scer.....: CTTTTATACTAACTTTT----TCTTCTTTAATTTTGTTTCAGGTTCACCAAGAACCATATGTTTTCAACGCAAGACCAGATGGTGTCCACGTTATCAACGTTGGTAAGACCTGGGAAAAA Spar.....: ctcttatactaacaatt--ttatttttctatttttatcgcaggttcaccaagaaccatatgttttcaatgctagaccagatggtgtccacgttatcaacgttggtaagacctgggaaaag Smik.....: ttcttatactaacatttcatttttctttttcttttatcacaggttcaccaagaaccatatgttttcaatgctagaccagatggtgtccacgttatcaacgttggtaagacctgggaaaaa Sbay.....: TACTAACATTTAATTTTCCTTCTCCCTTTATTTTTATTACAGGTTCACCAAGAACCATATGTTTTCAACGCTAGACCAGATGGTGTCCACGTTATCAACGTTGGTAAGACCTGGGAAAAA consensus: * * * * * ** * * **** * ***************************** ** *********************************************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ========================================>= 1920~2040: Scer.....: TTGGTTTTGGCTGCCAGAATCATCGCTGCCATTCCAAACCCAGAAGACGTTGTTGCCATCTCTTCCAGAACTTTCGGTCAAAGGGCTGTTTTGAAGTTCGCTGCCCACACCGGTGCTACC Spar.....: ttggttttggctgctagaatcatcgctgccattccaaacccagaagacgttgttgccatctcttccagaactttcggtcaaagggctgttttgaagttcgctgctcacactggtgctact Smik.....: ttggtcttggctgctagaatcattgctgccattccaaacccagaagacgttgttgccatctcttccagaactttcggtcaaagggctgttttgaagtttgctgctcacaccggtgctact Sbay.....: TTGGTCTTGGCCGCTAGAATCATCGCTGCCATTCCAAACCCAGAAGATGTCGTTGCCATCTCCTCCAGAACTTTCGGTCAAAGAGCTGTCTTGAAGTTCGCTGCTCACACTGGTGCTACC consensus: ***** ***** ** ******** *********************** ** *********** ******************** ***** ******** ***** ***** ******** 2040~2160: Scer.....: CCAATCGCCGGTAGATTCACTCCAGGTTCTTTCACCAATTATATCACCCGTTCTTTCAAGGAACCAAGATTAGTTATTGTCACCGACCCAAGATCAGATGCTCAAGCCATCAAGGAAGCT Spar.....: ccaatcgccggtagattcaccccaggttctttcaccaattacatcacccgttctttcaaggaaccaagattagttattgtcaccgacccaagatcagatgctcaagctatcaaggaagct Smik.....: ccaatcgctggtagatttaccccaggttctttcaccaattacatcacccgttctttcaaggaaccaagattagttattgtcaccgacccaagatcagatgctcaagccatcaaagaagct Sbay.....: CCAATTGCCGGTAGATTCACCCCAGGTTCTTTCACCAATTACATTACCCGTTCTTTCAAGGAACCAAGATTAGTTATCGTCACCGACCCAAGATCAGACGCTCAAGCCATCAAGGAAGCT consensus: ***** ** ******** ** ******************** ** ******************************** ******************** ******** ***** ****** 2160~2280: Scer.....: TCTTACGTTAACATCCCTGTCATTGCTCTAACTGATCTTGACTCTCCATCAGAATTCGTCGATGTCGCTATCCCATGTAACAACAGAGGTAAGCACTCCATTGGTTTAATCTGGTACTTA Spar.....: tcttacgttaacatcccagtcattgctctaactgatctggactcaccatcagaattcgtcgatgttgctatcccatgtaacaacagaggtaagcactccattggtttaatctggtactta Smik.....: tcctacgtcaacatcccagtcattgctctaactgacctggactctccatcagaatttgtcgatgtcgctattccatgtaacaacagaggtaaacactccatcggtttaatctggtactta Sbay.....: TCTTACGTTAACATCCCAGTCATTGCTCTAACCGACTTGGACTCCCCATCAGAATTCGTCGATGTCGCTATCCCATGTAACAACAGAGGTAAGCACTCCATCGGTTTAATTTGGTACTTA consensus: ** ***** ******** ************** ** * ***** *********** ******** ***** ******************** ******** ******** ********* 2280~2400: Scer.....: TTGGCTAGAGAAGTTTTGAGACTAAGAGGTGCTTTAGTTGACAGAACTCAACCATGGTCCATCATGCCAGATTTGTACTTCTACAGAGACCCTGAAGAAGTTGAACAACAAGTTGCTGAA Spar.....: ttggctagagaagtcttgagactaagaggtgctttggtcgacagaactcaaccatggtccatcATGCCAGATTTGTACTTCTACAGAGACCCTGAAGAAGTTGAACAACAAGTTGCTGAA Smik.....: ttggctagagaagtcttgagactaagaggcgctttagtcgacagaacccaaccatggtctatcATGCCAGATTTGTACTTCTACAGAGACCCTGAAGAAGTTGAACAACAAGTTGCTGAA Sbay.....: TTGGCCAGAGAAGTCTTGAGACTAAGAGGTGCTCTAGTCGACAGAACTCAACCATGGTCTATCATGCCAGATTTGTACTTCTACAGAGACCCTGAAGAAGTTGAACAA---GTCGCTGAA consensus: ***** ******** ************** *** * ** ******** *********** ************************************************ ** ****** 2400~2520: total....: ====== Scer.....: GAAGCTACCACCGAAGAAGCTGGTGAAGAAGAAGCCAAGGAAGAGGTTACCGAAGAGCAAGCTGAAGCTACTGAATGGGCTGAAGAAAATGCTGACAACGTCGAGTGGTAAgtaaggtga Spar.....: GAAGCCACCACTGAAGAAGCTGGTGAAGAAGAAACCAAGGAAGAAGTTACTGAAGAGCAAGCTGAAGCCACCGAATGGGCTGAAGAAAATGCTGACAACGTCGAATGGTAAgtaaggtga Smik.....: GAAGCAACCACTGAAGAAGCTGGTGAAGAAGAAGTCAAGGAAGAGATTACTGAAGAACAAGCTGAAGCCACTGAATGGGCTGAAGAAAATGCTGACAACGTCGAATGGTAAgtaaggtga Sbay.....: GAAGCTGCCACCGAAGAGGCTGGTGAAGAAGAAGCCAAGGAAGAGGTTACTGAAGAACAAGCTGAGGCCACTGAATGGGCTGAAGAAAACGCCGACAACGTCGAATGGTAAgtaaggtga consensus: ***** **** ***** *************** ********* **** ***** ******** ** ** ***************** ** *********** *************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2520~2640: Scer.....: tatttacaaatagtatattaataattatagtataatgttttattagaataacagatttctttatcaatttagcggctaaataaaaatcaagaaaaaagaaatacattcattgtgtcatct Spar.....: tatttacaaatagtatattaataattatagtataatgttttattagaataacagatttctttatcaaatta-cggctaaatagaaattaagagaaaaaaaaa--ttacattgtgccatct Smik.....: tatttacaaatagtatattaataattatagtataatgttttattagaataacagatttctttatcaatcta-cagctaaataaaaattagaaaaaaa-------attcattgtgccatac Sbay.....: tatttacaaatagtatattaataattatagtataatgttttattagaataacagatttctttatcaattca-ccactaaataaaagttaacaga-----------tacattgtgccgtct consensus: ******************************************************************* * * ******* ** * * * * * ******* * * 2640~2760: Scer.....: tgtcacacatttagccatgtactttatttgctgagaa---gtttaatcaattgagagtagttagctattgtagtaaaaatgtgcaaatgaagtcttatcaacacgtagcgtatatagtga Spar.....: tgtcacacatttaaccatgcacatcatttgttataaagttgcttaatcaattgagagtaattagctattgtgacaaggat--gaagataaaacctcatctacacatagcgtatatagtga Smik.....: cgtcacccacaataccatgcctttctctggcagagagaatgcttagtcaattgaatatacttggcaattgtagcgaa------cagatgaagccctttcatccaaccacgtatatagtga Sbay.....: cgtaacactttcaaccaggcgtaccgccc-caggaaatgtggttaatcaattg----tatgtaactattgtatctgt------tagtgaacatgctatcatcatattgcgtatatagtga consensus: ** ** * *** * * * *** ******* ** * * ***** * * ** * ************ Sbay_spli: DDDDDDDDDD 2760~2880: Scer.....: tctaaaac--agttagaaatataataagc-gaacttctaaaccattttagagcacatagccatggagaataggtacttgttttgacccgctcgacgaagtggtacgtagtgattgcgtgg Spar.....: tctaacac-agaaaagaaaggtaataagccgaacttctggaccatgt-aagacttattgtcatgaaggacagctccttattttgacctactcagcgaagt-gagggtagtgattgcgtga Smik.....: tctacaattagaagagaaagataataagc-gagtctctcgaccatat-aaagcatataaataaaccaaacaact-ttacctttgaaatactaagtgaagttgaaggtctcgattgcgttt Sbay.....: tctgagagtagaatggaaa-ataataagc-gagcctgt--attgccatgaaggatacacctactc---actagt-----cttcgagctgtctagtgaaggcagaagtcgcagcacggcgc consensus: *** * **** ******** ** * * * * * * * ** ** **** ** * Scer_spli: DDDDDD 2880~2904: Scer.....: attagtttat-cataagactttca Spar.....: ataagcatat-cctaagaccttca Smik.....: ataaatatac-caacagtctcaaa Sbay.....: acaattatctatctaagattttca consensus: * * * ** * { alias......: ['AMA1', 'SPO70'] chromosome.: 7 description: Required for sporulation; highly induced during sporulation end........: 946919 exons......: [(1, 1183), (1277, 1782)] gene.......: AMA1 introns....: [(1184, 1276)] length.....: 1782 name.......: YGR225W plength....: 594 start......: 945138 tdist......: 144017 type.......: ORF up.........: 1 } Scer: 3 donors and 5 branches Spar: 2 donors and 4 branches Smik: 3 donors and 1 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1702), ('Spar', 1702), ('Smik', 1702)] ->[('Scer', 141), ('Smik', 141)] ->[('Scer', 186)] ->[('Smik', 1537)] ->[('Spar', 120)] ] [ ->[('Scer', 1775), ('Spar', 1774), ('Smik', 1775)] ->[('Scer', 874), ('Spar', 874)] ->[('Scer', 2252), ('Spar', 2252)] ->[('Scer', 106)] ->[('Scer', 2451)] ->[('Spar', 2440)] ] 0~120: Scer.....: gttaagcacgatttagaaggtggcgagcctcaaagtgtaaagctgcagaaaaaataaacatgacttttagtaattggctgtttagctt-gctgaattgtgtaccacaactaacgataaca Spar.....: -----------------------------------------------------------------------------ttgtttagctt-gccaaatcatgttttatggcaaacggtaata Smik.....: ......................................................................taattcatt--tcatcttagccaaatcatgtgctagaacaaatggtaata consensus: * * * *** ** *** *** * * ** * *** * Scer_spli: BBBBBBB 120~240: Scer.....: gtaagagggtaatccgagacagtatgagtacagctattaaa-tagttaatttagatttttatactggtatgataaacgacgttcatatagcaagagcgtcaatgcctctatgtcaccttc Spar.....: gtatgagg-tgatttaagagcgtttttgcgctgcaattaaagtaatgaatttagattttcatagttacacaatagacgaccttgatatagcagaggcgttgatgcctctctgtcatcttc Smik.....: -tatgggcatgatatcagagtgtaagtatatattttttaat-tagtaggctcaagtttttataataacataatagcttatcctcacttcgcgggagcccaaat-ccttcatgttgtcttc consensus: ** * * * ** *** ** **** ** * * * **** *** * * *** * * * * ** ** ** *** *** **** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 240~360: Scer.....: aatagaagtttcccttttt-------------------atttcgacttttgtttttgtatttttcggcgtctgccttgttccatttttaaggcgccaaaaataaaataaaatgatgaacg Spar.....: gccagatgttttcctttttttttttttttttttttgagattttgacttctgtttttgtatttt-cggcgtctgccttctttcattttttaagcgccaaaa-taatatacaatgagggacg Smik.....: attacaagcttttcattttcttagattt---------aattttgacttctgtttttgtatttt-tggtgtctgtacttggctatttttaaggcgccaaaaataaaatacaataaaggacg consensus: * * * ** * **** **** ***** ************** ** ***** * ****** * ********* *** *** *** * * *** 360~480: Scer.....: attagtactcaaagaacactttaatccttggaaacaaaaaaataaaaaatcaaaagttgaa-ggaaggtcaaattttcttcctccaacgataataatacttgcttatataactcttttaa Spar.....: attagtactcaaagaacactttaatccttgaaaacaaaagaa-aaaaagtcaaacgttgca-ggaaggtaaaattttcttcctccaacgatag-aatacttgcttatacaa-tcgtttaa Smik.....: aataagactcaaataacactttcctctttaaaaacaaaaaaa---agcaataaccgttgcaaggaagaccacaatttcttcctcaaacgagaataatatttgcttatacattttttttaa consensus: * ** ******* ******** ** ** ******** ** * ** **** * ***** * * ********** ***** * **** ********* * * ***** 480~600: Scer.....: agttttacaaaactttggatcagaaaaaaagaaaaaaatATGGCTACTCCCCATTTATATCACAGATATAACTCCAAAAGCTCTAACAAAAATATCAATTCGAGCGGAAATTCTACAGAG Spar.....: agttttacaaaactttggatcagaaaaaa-gaaaaaaatATGGCTACTCCCCATCTAAATTACAGATACAACTCCAGAAACTCTAACAAAAATATCAATTCCAGCGGAAATGCCACAGAA Smik.....: agttttacacaactttggaacagataaaa-gaaaaaaagATGGCTACTCCTCATCAAAATTATAGATATAACTCCAGAAACTCTAGTAAAAACACCAATTCCAGTGGAAATTCGACAGAT consensus: ********* ********* **** **** ******** *********** *** * ** * ***** ******* ** ***** ***** * ****** ** ****** * ***** 600~720: Scer.....: GTTGACCGTTTCATTCCAAAATCAGTTTCGAGAAATGCTTATAAGTCTATTCCAATGTTAAATGGGTTTGACATAAGTTACTCAGAACTTTGCGAGAAATCTCCTTCACCTGAGCGGCTA Spar.....: GTTGACCGTTTCATTCCAAAATCAGTTTCAAGAAATGCTTATAAGTCTATTCCTATGTTGAATGGGTTTGATATAAGCTATTCAGAACTTTGTGAGAAATCTCCTTCGCCTGAGCGGCTA Smik.....: GTCGACCGTTTCATTCCTAAATCAGTTTCAAGGAATGCTTATAAGTCTATTCCTATGTTGAACGGGTTTGATATAAGCTACTCAGAGCTTCGTGAGAAATCCCCTTCACCTGAGCGGCTA consensus: ** ************** *********** ** ******************** ***** ** ******** ***** ** ***** *** * ******** ***** ************ 720~840: Scer.....: TCATCCCCTGAATTCTTTAACGAACTGCGAAACACCGGGCATTACGAATCAATCAGTACAACAAATGAGTTTTCCATGTCAAGTATCTCTAGCTCTTCTGAGAGTCAAGTTACCAGAAGT Spar.....: TCATCCCCCGAATTCTTTAACGAACTGCGAAACACCGGGAACTACGAATCAATCAGTGCAACAAATGAATTTTCCATGTCAAGTGTATCCAGCTCTTCTGAAAGTCAGGTTACCAGAAAT Smik.....: TCCTCCCCTGAATTCTTCAACGAACTGCGAAACACAGGCCACTATGAATCAATCAGTGCAACAAATGAATATTCCATATCAAGTATATCTAGCTCTTCTGAAAGTCAGACTACCAGGAGT consensus: ** ***** ******** ***************** ** * ** ************ ********** * ****** ****** * ** *********** ***** ****** * * 840~960: Scer.....: GGAAGTGCAAGAGCTTCAAGAAACGATTATTCAAAATTAACTAAAGAGCAAAAGGACCATAGAAAGAATATTGCACATTCTCTTGGTTTTCAATTGCCCGACCGTGTCTTTACGTTTGAG Spar.....: GGAAGCGCAAGAGCTTCAAAAAGAGATTATTCAAAATTAACTAAAGAGCAAAAGGACCATAGAAAAAACATCGCTCATTCCCTTGGTTTTCAATTGCCTGACCGTGTCTTTACATTTGAG Smik.....: GAAAGTGCAAGAGCTTCAAGAAAAGATTATTTGAAGTTAACTAAAGAACAAAAGAACCATAGAAAAAATATCGCACATTCTCTTGGTTTTCAATTGCCTGACCGTGTTTTTACTTTTGAG consensus: * *** ************* ** ******* ** *********** ****** ********** ** ** ** ***** ***************** ******** ***** ****** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 960~1080: Scer.....: ACCACAAGTGCTGAAATTCTGGAAAAGAATAAAGCCATCAAAAATTGCTTTGGACCAGGAAGTTGCGCCGAAATAAGATCAACCTTTGACTTTAGTACACTCTCGCCCGATGTTGCCCGT Spar.....: ACTACAAACGCTGAAATTAAGGAAAAGAATCAAGCCATCAAAAATAGCTTAGCGCCAGGAAGTTGCGCCAGAATACAAACAACCTTTGACTTTAGTACACTCTCGCCCGATGTCGCTCGT Smik.....: TCAACAACTACTGAAACTCAAGAAAAGAATCAAATTATTAAAAATAGCTTA-CACCAGGAAGTTGTTCTGGATTACAGACAACTTTTGACTTTAGTACACTTTCACCTGATGTCGCGCGT consensus: * **** ****** * ********* ** ** ****** **** *********** * * ** **** ***************** ** ** ***** ** *** 1080~1200: Scer.....: TATTATATCGCTAATTCTAACGCAAGATCAGCTTCCCCACAAAGACAAATCCAAAGACCTGCTAAACGAGTAAAGTCACATATTCCATACCGTGTATTGGATGCACCTTGCCTGAGAAAT Spar.....: TACTATATTGCTAATTCTAACGCAAGATCAGCTTCCCCACAAAGACAAGTGCAAAGACCTGTTAAACGAGTAAAGTCACATATTCCGTACCGTGTATTGGATGCACCTTGCTTGAGAAAT Smik.....: TACTATATTGCTAATTCAAACGCAAGATCGGCTTCGCCGCAAAGAAACGTGCAAAGACCTGTTAAACGAGTCAAGTCGCATATTCCTTACCGTGTGTTGGATGCACCTTGCCTGAGAAAC consensus: ** ***** ******** *********** ***** ** ****** * * ********** ********* ***** ******** ******** *************** ******* 1200~1320: Scer.....: GATTTTTATTCGAACTTAATTTCTTGGTCAAGAACCACAAACAACGTTTTGGTGGGACTGGGTTGCTCCGTATACATCTGGTCTGAGAAAGAAGGAGCGGTATCTATATTGGACCATCAA Spar.....: GATTTTTATTCGAATTTAATTTCCTGGTCAAGAACTACGAACAACGTTCTGGTGGGACTGGGTTGCTCTGTCTACATCTGGTCAGAGAAGGAAGGAGCGGTATCTATATTGGACCACCAA Smik.....: GACTTTTATTCAAACTTAATATCATGGTCAAGAACAACAAACAACGTTCTAGTTGGGTTGGGCTGCTCAGTATATATATGGTCAGAGAAAGAAGGAGCGGTATCTATATTGGATCATCAA consensus: ** ******** ** ***** ** *********** ** ********* * ** ** **** ***** ** ** ** ***** ***** *********************** ** *** 1320~1440: Scer.....: TACTTAAGTGAAAAGAGGGATTTAGTGACATGCGTCTCATTCTGTCCTTACAATACTTATTTTATTGTTGGTACAAAATTTGGCCGTATTCTTCTTTATGATCAAAAAGAATTTTTTCAT Spar.....: TATTTAAGTGAAAAGAGGGATCTAGTGACGTGTGTTTCATTCTGTCCTTATAATACATATTTCATTGTTGGTACAAAATTTGGCCGTATTCTTCTTTATGATCAAAAAGAATTTTTCCAT Smik.....: TATTTGAGTGAAAAGAGAGATTTGGTGACATGTGTTTCATTTTGTCCCTATAATACTTATTTTATTGTTGGTACAAAGTTTGGTCGTATTCTTCTTTATGACCAAAAGGAGTTTTTTCAT consensus: ** ** *********** *** * ***** ** ** ***** ***** ** ***** ***** ************** ***** ***************** ***** ** ***** *** 1440~1560: Scer.....: TCCAGCAACACAAACGAAAAGGAACCAGTATTTGTTTTCCAAACTGAATCCTTCAAAGGAATATGTTGCCTAGAATGGTTCAAACCAGGTGAAATTTGCAAATTTTATGTTGGAGAGGAA Spar.....: TCCAGCAAGACAAACGAAAAGGAACCAGTATTTGTTTTCCAAACCGAATCCTTTAAAGGGATATGTTGCCTAGAATGGTTTAAACCAGGTGAAATTTGCAAATTTTATATTGGAGAGGAA Smik.....: TCTACCAAAACAGACGAAAAGGAACCGGTATTTGTATTTCAAACAGAATCATTCAAAGGAATATGTTGTCTAGAATGGTTCAAGCCAGGCGACGTTTGTAAGTTTTATATTGGAGAAGAA consensus: ** * *** *** ************* ******** ** ***** ***** ** ***** ******** *********** ** ***** ** **** ** ****** ******* *** Smik_spli: DDDDDD 1560~1680: Scer.....: AATGGCAATGTGAGCCTCTTTGAAATAAAGAGTTTGCATTTCCCCATAAAAAACTGGAGTAAAAGACAAAAACTCGAAGATGAAAATTTAATAGGATTGAAACTTCATTCCACTTATCAA Spar.....: AATGGCAACGTAAGCCTCTTTGAAATAAAGAGTTTACATTTCCCCATGAAAAAATGGAATAAAAGACAAAAATACGAAGAAGAAAATTTAATAGGATTGAAACTTCATTCCACATACCAA Smik.....: AATGGCAGCGTAACCCTTTTTGAAATTAAGAATTTACGTTTCCCAGCCAAAAAGTGGAGTAAAAGACAAAAATTCCAAGAAGACAATTTAATTGGATTGAAGCTTCATTCGACATATCAA consensus: ******* ** * *** ******** **** *** * ****** ***** **** ************* * **** ** ******** ******** ******** ** ** *** 1680~1800: Scer.....: GCTCAGGCACAGCAAGTCTGTGGTACGTTATTAAGAGCTTATGCTTTCACATACCC-TTTTCTGGTAT-AGCGCTTATTTTTTCATTATGAAAAATACTAACA--AATATTTT-CTACAG Spar.....: GCTCAGGCACAACAAGTCTGTGGTACGTTATTAAGAACTTATGCCTTCACATACCCCTTTTTTTATAT-CGTGCGTACTTTTCCGTTTTGAAGA-TACTAACA--ATAACATTACTAAAG Smik.....: GCCCAAGCCCAACAAGTTTGTGGTACGTTAACAAGTGCTTACACAAGAGCTTTTACACACCCTTACGTTAATACTTGCTTTTTTTCTTTTCAAAATACTAACATAATAACATTGTTATAG consensus: ** ** ** ** ***** ************ *** **** * * * * * * * * **** * * * * ******** * * ** ** ** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBBB Smik_spli: DDDDDD BBBBBBB known....: >===============================================================================================>= 1800~1920: Scer.....: GTATTTCTCTGAATGAACATGCAAACCTGCTTGCAGTCGGCGGCAATGATAATTCTTGTAGCTTATGGGATATTTCCGACTTGGATAAACCTATTAAAAAGTTTGTTCTTCCACATAAAG Spar.....: GTATTTCGCTGAATGAACACTCAAATCTGCTCGCAGTTGGTGGAAACGATAATTCTTGCAGTTTATGGGATATTTCCGACTTGGATAGACCTGTGAAAAAGTTTGTTCTTCCTCATAAAG Smik.....: GAATTTCACTAAACGAACATTCCAACCTACTTGCAGTGGGTGGTAACGATAATTCTTGTAGTTTGTGGGATATTTCCGACTTGGATAAACCTATAAAAAAGTTTGTTCTTCCACATAAAG consensus: * ***** ** ** ***** * ** ** ** ***** ** ** ** *********** ** ** ********************** **** * ***************** ******* 1920~2040: Scer.....: CGGCTGTGAAGGCCATTGCCTTTTGTCCTTGGTCGAAGTCTTTGTTGGCTACGGGTGGTGGAAGCAAAGACAGATGTATTAAGTTTTGGCATACATCGACAGGCACATTGTTGGATGAGA Spar.....: CGGCCGTGAAGGCCATTGCGTTCTGTCCTTGGTCGAAGTCTTTGTTAGCTACGGGTGGTGGAAGTAAAGACAGATGTATCAAGTTTTGGCATACATCAACGGGCACATTGTTGGATGAGA Smik.....: CGGCAGTGAAAGCTATTGCCTTTTGTCCCTGGTCGAAATCTTTGTTGGCCACTGGCGGTGGAAGTAAAGACAGATGTATCAAGTTTTGGCATACGGCAACTGGTACATTGTTGGATg... consensus: **** ***** ** ***** ** ***** ******** ******** ** ** ** ******** ************** ************** * ** ** **************** 2040~2160: Scer.....: TTTGCACCTCGGGACAGGTGACGTCTTTGATATGGTCGTTGAGACATAAACAGATTGTTGCTACTTTTGGATTCGGTGATACCAA-GAATCCTGTATTAATAACACTATACTCATATCCA Spar.....: TTTACACCTCAGGACAGGTAACCTCTTTGATATGGTCGTTAAGACATAAACAGATTGTTGCCACTTTTGGATTCGGTGATACTAG-GAATCCTGTATTGATAACACTATATTCATATCCA Smik.....: .............................................................tactttcgggttcggtgacactagcaaatccagtattaataacactctattcatatcca consensus: *** ****** ******** ** ***************** ******************** ***** ** ******** ** * ***** ***** ******** ** ********* 2160~2280: Scer.....: AAATTATCAAAACTACTCGAAGTTAGGTCGCCCAACCCTTTGCGTGTACTGAGCGCAGTAATCTCTCCAAGTTCCATGGCAATTTGCGTTGCCACTAACGATGAAACGATAAGATTT-AT Spar.....: AAATTATCAAAGCTACTTGAAGTTAGATCACCGAACCCTTTACGTGTACTGAGTGCCGTAATCTCCCCAAGTTCCATGGCAATTTGCGTTGCCACTAACGATGAAACAATTAGATTTTAT Smik.....: aaattatctaaactacttgaggtcagatcaccaagccccttacgtgtactgagtgcggtgatctctccaagttctatggcaatttgcgttgctacaaatgacgaaacaattagattctat consensus: ******** ** ***** ** ** ** ** ** * *** ** *********** ** ** ***** ******** ***************** ** ** ** ***** ** ***** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2280~2400: Scer.....: GAACTGTGGAACGATAAGGAGGAAATAAttaatgaaattcaagagagtgggatttatggatctaatattatagaatatatggagggtatcgaaacaacacataacaaaagaataaggtaa Spar.....: GAATTATGGAATGACAAAGAAGAAATAATCAATGAGATCCAAGAAAGTGGGATATATGGATCTAATATTATAGAGTATATGGAGGGGATCGAAACAACACATAACAAAAGAATAAGATAA Smik.....: gaattatggaatgacaaggaagaaattataaatgagatacaagaaagtgggatatatgggtctaatatcatagagtatatggagggaattgaaacaacacataacaaaaggataagataa consensus: *** * ***** ** ** ** ***** ** ***** ** ***** ******** ***** ******** ***** *********** ** ******************** ***** *** 2400~2520: Scer.....: tataaaaaaaggatattcattgcacgcacaaaccaaatacttcaaatagcaaactaacagtaagaatatataaaactatacatacgtatacataaaaaaataatagggaaaaaaaaagga Spar.....: tataaaaataaaatattcattgcacacacgaaccaaatactactaacagcaaaataacagcaagaatatata--actatatatatgtatacataaaaaa-taacaa--aagaaaaaagga Smik.....: cataaaaa--aggcatgagtctcagaaacaagcgagatactactagcagcaaaataacgccaaagatatttt---gtacacatatttatgtataagaaaata-----------------a consensus: ******* ** * ** ** * * * ***** * * ****** **** ** **** * ** * *** *** **** *** ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2520~2640: Scer.....: aaccatatgagtttgaatgaggcgacgtgccatattaaacaat-tatattttaacacttccgcactgcacctatttagttggctgatttgtgacgtttttaattccgatcggcctgaaac Spar.....: agccatatgtttttggttgtcatgacgtggcgcaataaataaagtctaattcaa-acttcgatactacatcttatttgttggctgatttgtgacgttttttatttcgatcggcttggaac Smik.....: aactatatatatttggctgtcataacataatgcactcaataatgtcgatcttaa--gttcgaaagcgcatctttttttctggttgatttgtgacgtttcctaatccgatcggctggaaat consensus: * * **** **** ** ** * * * ** ** * * * ** *** * ** ** ** *** *************** * * ******** * ** 2640~2760: Scer.....: agcgaagggtcctggaaaattaagataataaaacgaaatgaaacccagcaacgttagatgatgctcaaaa-aaatatagagacagagaa-aaaccagaatacaaagagctgtttaagtgg Spar.....: agcgaagggtcctggaaaattaagataataaaacgaaatgaaatccagcaacgttagacgatgttcaaaacaaatagaagaacaaacaagaaaccagaatacgaagaactgcttaagtgg Smik.....: agcaaaagggcctggaaaatgaagatggtaaaataaaactaaatcctaaaacgttagaccatgttcaaaa-------aagaatacacaagtaaccagtgtaaaaaaagaacttcaggtag consensus: *** ** ** ********** ***** ***** *** *** ** ********* *** ****** * * * * ** ****** ** ** * * * ** * 2760~2804: Scer.....: tcaatatcccaggtacac-cgagcccagtcacatcgaacttata Spar.....: tctatatcccagatacgcacgaatccggtgacatcgaactaata Smik.....: tctatattcaaggcacgtacaaatctagtcgcatcgaactaata consensus: ** **** * ** ** * * * ** ********* *** { alias......: ['RPL14B'] chromosome.: 8 description: Ribosomal protein L14B end........: 105084 exons......: [(1, 129), (528, 815)] gene.......: RPL14B introns....: [(130, 527)] length.....: 815 name.......: YHL001W plength....: 271 start......: 104270 tdist......: 104270 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 0 donors and 0 branches Smik: 5 donors and 4 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 448), ('Smik', 448)] ->[('Scer', 1173), ('Smik', 1173)] ->[('Scer', 515)] ->[('Smik', 1407)] ->[('Smik', 1916)] ->[('Smik', 2091)] ] [ ->[('Scer', 802), ('Smik', 802)] ->[('Scer', 1953)] ->[('Scer', 2089)] ->[('Smik', 679)] ->[('Smik', 1681)] ->[('Smik', 2016)] ] 0~120: Scer.....: cccttcaacttatatagcacctttacatatctttaatttttacgaag------agcattttattcaact--tttgtacctttaaagacgg---ttttcagcccacacattttttgttatt Smik.....: -cttctaaattgtatagcgcctt-acgtaccgtcaatttataggactttacttaatgttctgatccggtcgttaATGCCTTTTGAAAAAGACCTTTTCCGCCCATACATTTTAT-TAAAT consensus: * * ** ** ****** **** ** ** * * ***** ** ** * ** * ** * ** * ***** * * * ***** ***** ******* * * * * 120~240: Scer.....: ttacaccacacagtaaaactttcttgcttttttttcttgagactccccgaccattgttcgatattccaattttcgcaatcttc--agaaaagggtatcctaacattctaaattaataata Smik.....: TTACACCACACTATAAATAAATATTGGCCATTTAATTCAATTTTCGCCGACCATTCATCTATATTTCAACTTTTGACATTTTTCAAAAAAAAGGTATCCAAACATCCTAAATTACTGTTG consensus: *********** **** * *** *** * * ** ********* ** ***** *** *** * ** ** * **** ******* ***** ******** * * 240~360: Scer.....: aagaagagaggctacaagcatttattagtgtgaagcatttaaagtaacttcaggaaataaacgcgcaaataaaccaaaaATGTCCACTGATTCTATTGTTAAAGCCTCCAACTGGAGATT Smik.....: AAAA----GAGCTATAAACATTTACAAGCGTAAAGCGATTGAACCAAACCTAAGAAAGAAACGCCTAAATCATCCAAAAATGTCCACTGATTCTATTGTTAAAGCTTCCAACTGGAGATT consensus: ** * **** ** ****** ** ** **** ** ** ** * **** ****** **** * ******************************** ************** 360~480: Scer.....: AGTCGAAGTCGGCCGTGTCGTTTTGATCAAAAAGGGTCAATCCGCAGGTAAATTGGCTGCTATCGTTGAAATTATCGACCAAAAGAAGGTATGTTGAACCTA-AAACCCACCGTGGACAA Smik.....: AGTCGAAGTTGGCCGTGTTGTTTTGATCAAGAATGGTCAATCCGCAGGTAAATTGGCTGCTATCGTCGAAATCATTGACCAAAAAAAGGTATGTTGAacctgtgaacctactgc---caa consensus: ********* ******** *********** ** ******************************** ***** ** ******** **************** **** ** * *** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >=============================== 480~600: Scer.....: ACTGAGGAGGAAATTGTAAGGAAGAGAAAGTCCCCGTATGTTCAGGGACC-GCCAACGACTTCCTGATTCATGCCTGAATAGTGAA-ACATGTTAAACAATGAGTAGATGCTGAAATATG Smik.....: aatgagaagagaatta-aaagaggatagaattactctatgttaagacacccgtcattaactt--taattcgtgaccgaattatgaatgcgtctt---tgttgattgaatgtgaaaatgca consensus: * **** ** **** ** ** ** * * * * ****** ** *** * ** **** * **** ** * **** **** * * ** *** * *** **** Scer_spli: DDDDDD known....: ======================================================================================================================== 600~720: Scer.....: CAATGGGACAGAGGGCCGGAGATG-TTTCTATTCTTTTTTTGCATAAACAACAGTGAAATTTCTACATATTTTGTTACTGGCAAACTCCTTCCCTGGCAGTTAATAACTCCCATACTTAA Smik.....: cagtgaactggaaatgccaagatgatttcaaatatcctacgaagtagactaaagtgttataattgcatatttaggtgccaattaactttgtttttgaagaattatcg-ttccacctttgc consensus: ** ** ** * ***** **** * * * * ** ** * **** ** * ******* * * * **** * ** * ** * *** ** Smik_spli: BBBBBBB known....: ======================================================================================================================== 720~840: Scer.....: GAAGATAACTTCAGCACA-TGTAGCCATACCTCCTCAATTGCCAAATAATCTTTTCCTGT----TTTCAAAGTATTTCAATTTACTAACAACTTTTATGAATAATTTTTTAAATTATTCG Smik.....: gaaagtaccttcgacatagttcagttatccttctccgaggctcaaacagttttctcttttataattttaaagattttcgttttactaacaacttttgt-aatgattttg-aaatgatcat consensus: *** ** **** ** * * ** ** * ** * * **** * * ** ** * * *** **** **** **************** * *** ***** **** ** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 840~960: Scer.....: TTATAATTACTATAGGTTTTGATTGATGGTCCAAAAGCTGGTGTCCCACGTCAAGCCATCAACTTGGGTCAAGTTGTCTTAACTCCATTGACCTTTGCTCTACCAAGAGGTGCTAGAACT Smik.....: tattaattattataggttttgatcgatggtccaaaatctggcgttccacgtcaagccatcaacttgggtcaagttgtcttgactccgttaacattcactttaccaagaggagctagaact consensus: * ****** ************* ************ **** ** *********************************** ***** ** ** ** ** ********** ********* known....: =============>= 960~1080: Scer.....: GCTACCGTTTCTAAGAAGTGGGCTGCTGCTGGTGTTTGCGAAAAGTGGGCTGCTTCATCTTGGGCTAAGAAGATTGCTCAACGTGAAAGACGTGCTGCTTTGACTGACTTTGAAAGATTC Smik.....: gctaccgtttctaagaagtgggctgctgctggtgtctgtgaaaaatgggcttcttcatcttgggctaagaaaattgctcaacgtgaaagacgtgctgctttgaccgactttgaaagattc consensus: *********************************** ** ***** ****** ******************* ******************************** *************** 1080~1200: Scer.....: CAAGTTATGGTTTTAAGAAAGCAAAAGAGATACACTGTCAAGAAGGCTTTGGCTAAGGCTTAAaaaaagaag-aataattctaaaatccataggtaagtactgaaagcaattt-tgcgtt Smik.....: caagttatggttttaagaaagcaaaagagatacactgtcagaaaagctttggctaaggcttaaaaggaaagatggtaattctaaagtccataggtaagtactgaaggcaatctctgcgtt consensus: **************************************** ** ******************** * * ********** ******************* ***** * ****** Scer_spli: DDDDDD Smik_spli: DDDDDD 1200~1320: Scer.....: ccgtcaatgcatatta-tatatattaatcttaaccatttatgtaaacaacatatc--atttcattttgttctggccacattccctgttcctctcaatatagtgatgttttataagggata Smik.....: ctgtcaatgcatattaatatataataatcttaaccacttatataaacaacatatctcatttcattgtgttctggccacatcccgcaattcttgatcctaatttaaattgcacatggagca consensus: * ************** ****** ************ **** ************* ******** ************** ** * ** * * * ** * * ** * 1320~1440: Scer.....: ttctttgcggctccattataaatacactttaccatgagagtttcctcaccagctatattactcgcgccaactaccattcgacgcaaggaacaaaaaagcatctagataatagtaga-gag Smik.....: attttcatcatcc---tctaagtcatcggtacttatctaaattctccagtttctagcg---ttacattag--agttttcgtatcaaagtatgccaaacaagctaaaccattctcaataaa consensus: * ** * * *** * * *** * *** ** *** * * * * **** *** * * *** * *** * ** * * * Smik_spli: DDDDDD 1440~1560: Scer.....: gtggtgatacaccctcaggttgctatgacgatatattctccgtaaattctttcttacgattattcctttagatcggcaagagatttgggcttgaggaagcgataaaattctttgttgaca Smik.....: gcagaaaaaaatacctc-------------atatatacaacggcaacagtgtgttagcgttgtatttttacgt-----agaaatgtaagcttgacgatacgataaagc-cttcgccgact consensus: * * * * * * ****** * ** ** * * *** ** * **** * *** ** * ****** ** ******* *** * *** 1560~1680: Scer.....: aaactctcccttagtgcttgtgaaataaacatcaataatcatttttttatttttcgc-gtttttaagataatgtcttaaccaattttctaagttcggaacacaaaacccaatgtttaatc Smik.....: aaaatataaattaccacaattc--ataaactttttcgcttagtaaattaatttttactgttcggaaagcaa------aacca----------tacgtaacgcgtactttaaactttataa consensus: *** * * *** * * ****** * * * * *** **** * *** ** ** ***** * ** *** * * ** **** 1680~1800: Scer.....: atttttaataaacaatttagtatatatattattttaattttattaaattaattaaaattaaaagaattattagtcatgtgattaccatcctacttattatactaaatcgttttgtggatg Smik.....: aaattaacaaaacgtttgtaaaagtaaacaattttatgtttttttgttt------------------ttttagtcatgtgatt-ttagtatattt------ccaaatc--tctgcaatta consensus: * ** * **** ** * ** * ****** *** ** ** * ************** * ** ** * ***** * ** * Smik_spli: BBBBBBB 1800~1920: Scer.....: tgtaattgttggagttcttcttatctactttttaacttgtgtgtaattagagctgtacattcaaggtaaggaatgtaatgcaccaatgattacctaaatcaaattcgaaatatgt-atca Smik.....: tttcatcat-aaaattgtttttaactagttac-gatgcatatgaatatattgcaactcattaaaaggaggaattgtagcctacgtacgattgtttaactcatccttggataattttgtaa consensus: * * ** * * ** ** *** *** ** * * ** * ** ** **** ** * * * * **** ** * **** *** *** * * * ** * * * Smik_spli: DDDD 1920~2040: Scer.....: gtatattat-aggaatgttaattcgctcgtgcgtactaatttttccgaggtcactcgcaaatccagaattctaaaggatgaaagtatattttctgaaatcgtcaacaaag-aagggatgt Smik.....: gtacttggttaaaagttttggtttgctcgtgcgtatta-cttttccgagagccctcgcaaaccctgattattaaaggatggagcta-attttcagaaattaacaacaaagtaagagatac consensus: *** * * * * * ** ** *********** ** ********* * ******** ** ** * ********* * ** ****** ***** ******** *** *** Scer_spli: BBBBBBB Smik_spli: DD BBBBBBB 2040~2116: Scer.....: gatatattcaaaatggaaagattcctccttctttcatttagaaataggaaactaaccagtaaattagaaacaaaga Smik.....: gatacgttcaaa-tagaaggatttat--ttctactattttg--ataacgaagtacgtttcaaaacaaaga------ consensus: **** ****** * *** **** * **** **** * *** ** ** *** * * * Scer_spli: BBBBBBB Smik_spli: DDDDDD { alias......: ['QCR10'] chromosome.: 8 description: 8.5 kDa subunit of the ubiqunol-cytochrome c oxidoreductase complex end........: 108115 exons......: [(1, 6), (70, 297)] gene.......: QCR10 introns....: [(7, 69)] length.....: 297 name.......: YHR001W-A plength....: 99 start......: 107819 tdist......: 107819 type.......: ORF up.........: 1 } Scer: 1 donors and 4 branches Spar: 4 donors and 2 branches Smik: 6 donors and 2 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Spar', 228), ('Smik', 224), ('Smik', 228), ('Smik', 232)] ->[('Scer', 500), ('Spar', 500), ('Smik', 500)] ->[('Smik', 676)] ->[('Smik', 1437)] ->[('Spar', 82)] ->[('Spar', 438)] ] [ ->[('Scer', 553), ('Spar', 553), ('Smik', 553)] ->[('Scer', 1231), ('Spar', 1231), ('Smik', 1231)] ->[('Scer', 91)] ->[('Scer', 482)] ] 0~120: Scer.....: gcttctcattctattttaattatactagtacgatttctcactctgtaattt-aatatcagtgtaatatgcacctagttatgggta-gtttttgctaacgttacgagccgcgaaa-ctgtc Spar.....: -attgttatcccattttatctatctgagtacgattttccaatccgctatttcaatgtcagcgtagtatacacatagccatatgtatgttttttcagactttacggtttgcgaaagttctc Smik.....: -gatattgcttc-ttgcaactatattgatatcatttct-atgatgcaatttcaatataag-gtagaatagatctatctacgtata--tcacttcctatttttaagaatgttcaaggtctc consensus: * * ** * *** ** **** * * **** *** * ** *** ** * ** * ** * * * * ** * ** * ** Scer_spli: BBBBBBB Spar_spli: DDDDDD 120~240: Scer.....: ctcaatcttcaccactacctctaatgactgaagaatgctatgcgatataacgctgtcgcactttgaatatatacttatatttacata-------------gttttcaagtgcgtattact Spar.....: cttgatcttggcaacaacttttaatgattgaggaatgcgttgaggt--aatgctgtggcactatgaatatatatatatatgtatatatata---------gttttcaagcatgtattcct Smik.....: ttcaaccttggccaatgtgtctagtaattgcggaatgtgctgaagtgcaatattaatacagtaagaatatatatatatatatatatatatatatatatatatatgtatgtatgtatgtct consensus: * * *** * * * ** * * ** ***** ** * ** * ** * ********* ***** ** *** * * * * **** ** Spar_spli: DDDDDD Smik_spli: DDDDDDDDDDDDDD 240~360: Scer.....: ---attgcaaagta----------gtatttt--gtcacgtgattttgatccaattaaaactaaatatggttcaacccgttgtttccgcatcaaaaaaccataccatttatcaaggggac- Spar.....: ---attgtattatt----------gtattt---gtcacgtgattttgatccaattaaaactcaagacgacttgacccgttgtctccgcatcgaaaaaccatgccatttatcaaggggac- Smik.....: ggaattagagcatttgattcctttgtattatgtgtcacgtgattttgatccaatcaaaactaaagccggtttcatccgttgtctccgcttcaatg---catgctatttatcaaggggaca consensus: *** * * ***** ********************* ****** ** * * * ******* ***** ** * *** * *************** 360~480: Scer.....: gggatatatcacataacagtttgaatgcataatttgttatagatatcttctggaataatcttcacagcaaaa----gcgcaagtcgaataatatatcgataaatacaatccataagactt Spar.....: gagatatatctcataacgatttgaacgtgtagcttggtatatatgccttccacaataaacttcatagtgaaa----gcgtaagtcgacaaatatatcggtagatacaatccgcaagactt Smik.....: gagatatatcacataagggtttgagaacttcacttactatacatacctttttaagtgaacttcaaagcaaagtcatacatacattgacgagtatatcaataattacaactcaca-gactt consensus: * ******** ***** ***** * ** **** ** *** * * * ***** ** ** * * * ** * ****** ** ***** * * ***** Spar_spli: DDDDDD 480~600: Scer.....: aaaacta-acctcaATGGCGGTAAGTATCCTATCATATTATGTGA----------GCTAGAACCGAATTAGTATACTAACATTTATAATACAGTACACTTCTCATCTGTCTTCAAAAACT Spar.....: aaaactatacaacaatggcagtaagtagcgcatcatattatctga----------gctaggattaaattaatatactaacatctATGATACAGTACACTTCTCACCTGTCTTCAAAAACT Smik.....: aaaactatttttcaATGGCAGTAAGTAACTCATCATGTTATCTAGTGTTTTCTAGGTTAAGACTGAAT-AATATACTAACACTTACGGTACAGTACACATCTCATCTCTCTTCGAAAACC consensus: ******* ******* ******* * ***** **** * * ** * *** * ********** ** ********** ***** ** ***** ***** Scer_spli: BBBBBBBB DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB known....: >======================================================================>= 600~720: Scer.....: GGTCTACATTTCGGTAGACTTTCTTTAAGAAGTTTAACAGCTTATGCTCCGAATTTAATGTTATGGGGTGGTGCTAGCATGCTTGGGCTATTTGTATTCACAGAAGGATGGCCTAAGTTT Spar.....: GGTCTACATTTCGGTAGACTTTCTTTAAGAAGTTTAACAGCTTACGCTCCGAATTTAATGTTATGGGGCGGAGCCAGCATGCTTGGTTTATTTGTGTTCACAGAAGGATGGCCTAAGTTT Smik.....: GGTCTACATTTTGGTAGACTTTCTTTAAGAAGCTTAACTGCATACGCACCAAACTTGATGCTATGGGGTGGAGCCAGCATGTTTGGCTTATTTGTGTTCACAGAAGGTTGGCCCAAGTTT consensus: *********** ******************** ***** ** ** ** ** ** ** *** ******* ** ** ****** **** ******* *********** ***** ****** Smik_spli: DDDDDD 720~840: Scer.....: CAAGATACGCTATACAAAAAGATTCCGTTGTTAGGACCTACATTGGAAGATCATACTCCACCAGAAGATAAACCTAATTGAagccaaaacatccaaccggctgagtgattttatttattt Spar.....: CAAGATACTTTATACAAAAAGATCCCATTGTTAGGATCTACATTAGAGGATCATACTCCACCAGAAGATAAACCTAATTAAagccgacagacataacaagctgagcgattttatttattt Smik.....: CAAGATGCCTTATACAAAAAGATTCCGTTGTTAGGACCTACATTGGAGGATCATACTCCACCAGAAGATAAGCCTAATTGAaactgtcagacgtaaca-----agggattttgtttatct consensus: ****** * ************* ** ********* ******* ** *********************** ******* ** * * * *** ** ****** ***** * 840~960: Scer.....: gttttacg----ttcttttctatcattttggaagaggaattaatgcaaaacacatttgtatttttttttatttttgcatattctcgattatctatacatatttttaaa----ctggatca Spar.....: gttttacg----ttcttttctattatttgggaggaagaattattgcaaaacacacttggatttttttt-atttttgcatattctcgattatctatacatattagtaaaaa--ctggatca Smik.....: gttttatgcttgttcttttctatcgcttgggaacaggaatcaatgcaaaacacatttggataattatt-acttttgcatattctctattatctatgtacatttgtaaaaaacccggatca consensus: ****** * *********** ** *** * **** * *********** *** ** ** ** * ************** ********* * *** **** * ****** 960~1080: Scer.....: taaaaggtataaaaagtaattgatccatacaacatttttaaatatttacccctctattttcagaatatttactaaaacatcagttatcaaagagtagggaaaagttaactacaggtttgt Spar.....: taaaaggtataaaaagtaattgatctctacaacatttttaagtatctatacctctattttttaaatatttattgagacattagtaat------acagggaggaataaacttcaggcttgt Smik.....: agaattaaataaaa-gtggttgatcttcgcaacatttcaaaatatatacc-------ttttctaatattgattaaaaga-cattgat------atagggaagagtaaacttcaagttctt consensus: ** ****** ** ****** ******** ** *** ** *** ****** * * * * * * * ** ***** * * **** ** * * * 1080~1200: Scer.....: ttttcctctttttatgtatcttttgagctttgtaattgggcagca---------catctct--------------------------atgttttcagggaaacctatttcattcgccatt Spar.....: tcttccttttttaa--taccttttgaactttgcagtaagattgtagaaagattccatcgctttcagctcataatggtacattcatgtgtattttcaaggaaacctatgtaatacgccatt Smik.....: tcttcctttaaggtaatactatttgagctttgcagttacactgtcgaatcattctgtagcattaag------actcgatgcagattcatgttt----gtaaacctgtgtcatacgctagt consensus: * ***** * ** ***** ***** * * * * * * *** * ****** * * ** *** * * 1200~1320: Scer.....: ttgatgattt--------aggcatacgccaatgctaacgccgtttcttgtaattt---ctattttttcaaatggagtactttaccttcctcccgcagctggaactttcaacccgccggaa Spar.....: ttgatgacttcagtacttaggcatctaccaatgctaacgccgtttcttgtaatttaattcttttttttaaatggagtacagtaccttcc---cgcagctg-aactttcaacccgccggaa Smik.....: ttgataattttagtgttttagcatctaccaatgctaacgccgtttcaagcagttg--cttttcttttttaatggagcat----cttttc----gcagctggaattttcaacccgccggaa consensus: ***** * ** **** ******************* * * ** * **** ******* * * ** * ******* ** **************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 1320~1440: Scer.....: g-aaaagaccaaataa-tattataattaatatttaaaa-cccttgaaagatcatctcttaaaataacctcaaatagtgtaaatccaagcacttgaaaactttgccgttttagaactcgtt Spar.....: g-aaaagaccaaataaatagtatatttagcatttaaaaacccttgaaagatcatctcctaaaataacctcaaatagcgtaaaatcaagcacttgaaaacttcatccattcagaactcgtc Smik.....: gtaaaagaccaaataaatactatagttagtatttataaacccttgaaagaacaattcttgacgcaac-tcaaacagcataggctta-gcatttggtaaatttaactgtgtaaacgttgtt consensus: * ************** ** **** *** ***** ** *********** ** ** * * *** ***** ** ** * *** *** ** ** * * * * * ** Smik_spli: DDD 1440~1549: Scer.....: aaatcctttaagaaggacataacagccagagtaacaaaatagtttgctcgtgaaagcaccagtgaaatttctcgaggtaactgctaaaataaacacagttcttaagt-- Spar.....: aaccccttcaagaagtaaataacgcccaaagttacagaataatcagcttgttagagcaccagtggaatttctcgaggtaactgcttaaataaatacaactcttagaact Smik.....: cg-tactttaagtacttcacaacattcggcattataaga-aaacaatttctaatagcactgatagaattcctcgaggtgtctgctaaaatatacgcaactatttaatt- consensus: *** *** * * *** * * * * * * * * * ***** * **** ******** ***** ***** * ** * ** Smik_spli: DDDD { alias......: ['RPL27A', 'RPL27'] chromosome.: 8 description: Ribosomal protein L27A end........: 127484 exons......: [(1, 31), (593, 972)] gene.......: RPL27A introns....: [(32, 592)] length.....: 972 name.......: YHR010W plength....: 324 start......: 126513 tdist......: 126513 type.......: ORF up.........: 1 } Scer: 6 donors and 2 branches Spar: 5 donors and 2 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 196), ('Spar', 196)] ->[('Scer', 885), ('Spar', 885)] ->[('Scer', 1902), ('Spar', 1902)] ->[('Scer', 266)] ->[('Scer', 302)] ->[('Scer', 736)] ->[('Spar', 599)] ->[('Spar', 2044)] ] [ ->[('Scer', 1126), ('Spar', 1126)] ->[('Scer', 1419), ('Spar', 1419)] ] 0~120: Scer.....: ttataaacactattccttctgttgcttggttaaaatgctattgatacttagatggtgtattggagagcacgaaaatcttttgctgagtgacttgaactatcaaacagaattacttgttgg Spar.....: ttatgaattctactcctt-tgctgcttcgctaaaatgttattgatacttaaacggtgtattagggagcacgaaagtctcttgctgagtgattcgcactgttagatagaattattggttgg consensus: **** ** *** ***** ** ***** * ******* ************ * ******** * ********** *** *********** * * *** * * * ******* * ***** 120~240: Scer.....: ctgatttttttt----aagtcttgatttaacaatagaaaaaaaaaaaaaaaaaaaaggaacaatataacttttgtagtacgtgtgccaggttacagatatggtttcacttctatgtcgtg Spar.....: ctgtttttttttttttaagtcttgatttaacaatagaaaaaaaaagatcaaaaaac------------ttgtcttagtacgtacgccaggttatgaatatagtgtcgcttctatgtcgtg consensus: *** ******** ***************************** * ****** * * ******** ********* **** ** ** ************* Scer_spli: DDDDDD Spar_spli: DDDDDD 240~360: Scer.....: cttttttcattcatacgtaatcttatgcatgtaggggatagacgcacaaaagcaccaaggctgcatgtattgataaattggcttacacgattccagctaaggggactcggacggaaccgt Spar.....: cttttttcattcatacgcaacttcatgcacataggggatagacgcataaaagcagtaaggctatatgtattgataaattggctttcacaattcctgctaaggggactcggacggaaccgg consensus: ***************** ** * ***** *************** ******* ****** ******************** *** ***** ************************ Scer_spli: DDDDDD DDDDDD 360~480: Scer.....: -ctcatattatacgttcagtgaatattttt-cacggaagaatggaaagggcctcgaaagacgttaatgcatccgtacacctacatctttacattttttgctgttgcacctacactgtttt Spar.....: gctcatattatacgttcaatcaatattttttcacggaaaaatggagaccgctccggaagacgtttttgcagccgtacacctacatctttacattt--tgctgtggctcctgcaatatttt consensus: ***************** * ********* ******* ****** * ** ** ******** **** ************************ ****** ** *** ** * **** 480~600: Scer.....: tttttttttcaccttatgagtcctgtatttctt-----gaaagagccgataacaatattccaggtggagtcccgaggcagaa-tcaaggctgcggagagaagttcctctc-aaactaatg Spar.....: ttt-----tcaccttatgagtcctgggtctctttgagaaaaaaagccgatagtagcattccaggcggagtcctgaggtggaaatcaaggccatggagagaaggttcgctccaagccaatg consensus: *** ***************** * **** *** ******** * ******** ******* **** *** ******* ********* * * *** ** * **** Spar_spli: D 600~720: Scer.....: ggagtgatccgctcagttctcccatcacgacagaactgtctgagacaaagtctttccagcagag-tccgcctacgctcttgctgcagagattcgcccgaaggcaggtttcctgaaattct Spar.....: tgagtgattggctcagctctcccatcacgagggaactgtctgagacaaggcctttccagcggagctccgcctacgctctcgctacagagatttgcccgaaggaaggtttcctgaaattct consensus: ******* ****** ************* **************** * ********* *** ************** *** ******** ********* ***************** Spar_spli: DDDDD 720~840: Scer.....: tttcactagt-aaagtgttcgttcatgtaaaacatactgccgtagttttgagctaaaattaaagatatattagatttttagaatttcttagatagtctcaacgtgttaaaacaaaagcat Spar.....: tttcactagggaaagtgctcgctcatgtaaaacatactgctgtagtttggaggtgaaattgaagatatattagattcgtacaatttcttagctagtctcaacgtgttaaaacaaaagcat consensus: ********* ****** *** ****************** ******* *** * ***** *************** ** ********** **************************** Scer_spli: DDDDDD 840~960: Scer.....: aaccaaagaaaaaaATGGCTAAGTTCTTGAAAGCTGGTAAAGTTGGTACGTATCATTTTCAGTTTTTGGACATCAACAAA-AAACCGTGCAACTGTGGTATTAGAAATCCAAGTTATTAG Spar.....: aaccaaagaaaaaaatggctaagttcttgaaagctggtaaagttggtacgtatcattttcagtttctggacgtcaacgaataaaccgtgcaactgtggtattagaaatccaagttattag consensus: ***************************************************************** ***** ***** ** *************************************** Scer_spli: DDDDDD Spar_spli: DDDDDD known....: >========================================================================== 960~1080: Scer.....: CAGTTGATGTTGTATAATTTGAGTTTGAATTCGAGTATTGTATCTTCATATGGGAGTAGGGAGGAAAAAGCGTGGAGATGTTAGATCTGGGAA--AAAACCTTTAAATTTGAATGATAGC Spar.....: cagttgattttgtccaatttaagtttgaattcgagtattgtatcttcatatgagggtgggaaagagagagtatggagagattagatattgtagtgaaagcatttagatttgagagatggc consensus: ******** **** ***** ******************************* * ** ** * ** * ** ****** ****** * * * *** * **** ****** *** ** known....: ======================================================================================================================== 1080~1200: Scer.....: TTATTAATAGAAATATTGGACAAAAAGATGAATGATTTAGGAGCGAAACTAACGATT-ATTCATATTCATTGAGCT-ATACGAGGCAGTGGAAGGGTTATCAAAAAGTTGTAATTTAAAA Spar.....: ttattgataaaatgattggatgtaa-gatggatgatttaggagtgatattaacgagggatccatattcactaagcttagacgaggcagccgaaggattatcaaaaagttgcaatttaaaa consensus: ***** *** ** ****** ** **** ************ ** * ****** ** ******** * **** * ********* ***** ************** ********* Scer_spli: BBBBBBB Spar_spli: BBBBBBB known....: ======================================================================================================================== 1200~1320: Scer.....: GAA--AAAAGCATCAATAGCCACCAAATAAGATGGTGAAAGTTCC-GCGATATATTTGCTAAGACCATAGGCACATGTACGCAGGCGACCAGGGCCTTTTATTTACTGTAGTTCTTTCCA Spar.....: ggagaaaaagcacaagtagctagcaa--taaatggtaaaagttcccgcggtatcttcgccaaggccataggcagatacttgcaa-ctatcgagaactttcatttactgctgccctcgctg consensus: * * ******* * **** * *** * ***** ******** *** *** ** ** *** ********* ** *** * * * * **** ******** * ** * known....: ======================================================================================================================== 1320~1440: Scer.....: TGCCCTATTAAAAATTCGTGGGCCTATGATAATTTTT-CTCTCCCTAGTATTGAAGAACAAAATTGAGAATTCGCCAAACTTTAAGAAGGGTTCACATTTACTAACTATTTCTTTTCCTT Spar.....: tggtctgtgggaagg-catgaggttataatatttttttctccccctagtatcgaagagcataaa-gagaattcactaaa-tacATGAAGGGTTCACCATTACTAACTATTTATTTTCTTT consensus: ** ** * ** * ** * *** *** ***** *** ********* ***** ** ** ******** * *** * * *********** ************* ***** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB known....: ======================================================================================================================== 1440~1560: Scer.....: CCTTTTTTTACACAGCTGTCGTTGTCCGTGGTCGTTACGCCGGTAAGAAGGTTGTTATCGTTAAACCACATGATGAAGGTTCCAAGTCTCACCCATTTGGTCACGCTTTGGTTGCCGGTA Spar.....: CCCTTTTTAACTCAGCTGTCGTTGTCCGTGGTCGTTACGCCGGTAAGAAGGTTGTTATCGTTAAACCACATGATGAAGGTTCCAAGTCTCACCCATTTGGTCACGCTTTGGTTGCCGGTA consensus: ** ***** ** ************************************************************************************************************ known....: =============>= 1560~1680: Scer.....: TTGAAAGATACCCATTGAAGGTCACCAAGAAGCACGGTGCCAAGAAGGTTGCTAAGAGAACCAAGATCAAGCCTTTCATCAAGGTCGTCAACTACAACCATTTATTGCCAACCAGATACA Spar.....: TTGAAAGATACCCATTAAAGGTCACCAAGAAGCACGGTGCCAAGAAGGTTGCTAAGAGAACCAAGATCAAGCCTTTCATCAAGGTCGTCAACTACAACCATTTATTGCCAACCAGATACA consensus: **************** ******************************************************************************************************* 1680~1800: Scer.....: CTTTAGATGTTGAAGCTTTCAAATCCGTTGTTTCTACTGAAACTTTCGAACAACCTTCCCAACGTGAAGAAGCTAAGAAAGTCGTCAAGAAGGCTTTCGAAGAAAGACACCAAGCTGGTA Spar.....: CTTTAGATGTCGAAGCTTTCAAATCCGTTGTTTCTACTGAAACTTTCGAACAACCTTCCCAACGTGAAGAAGCTAAGAAGGTCGTCAAGAAGGCTTTCGAAGAAAGACACCAAGCTGGTA consensus: ********** ******************************************************************** **************************************** 1800~1920: Scer.....: AGAACCAATGGTTCTTCTCTAAGTTGAGATTTTAAgagaattgcattatggtcaaccaaaaatcaaaaaattattagtaatatcaacatatgtatatttaatgtatgtaaacaatgatta Spar.....: AGAACCAATGGTTCTTCTCTAAGTTGAGATTTTAAgagaattgcattatggtcaaccaaaaattaaaaa-ttattagtaatatcaacatatgtatatttaatgtatgtaaacaatgatta consensus: *************************************************************** ***** ************************************************** Scer_spli: DDDDDD Spar_spli: DDDDDD 1920~2040: Scer.....: aatattaataaaatatatctacatataagtatacgcaaatggggtttttcttcaaaaaaattgtttgctggtgttttcaaccttaacgacaaaacgaatcataacgcggtaaaggggaac Spar.....: aatattaataaaatatatctacatataagtatacgcaaatggg-tttttcttcaaaa--attgtttgttggtattttta--------gagacaacgaaaggcaacgcgataaaagggaag consensus: ******************************************* ************* ******** **** **** * ** * ****** ****** **** ***** 2040~2125: Scer.....: gataatatataatggaagcattaagcaaacagctttgtaatacgttttacagac---actgaacaagacaagattttaaacagca Spar.....: gatagtaagtaatgaaagaattaaactaagagacttttagcgcgcttaacagaagagactaagcaagacaatattttaaacagca consensus: **** ** ***** *** ***** * ** ** ** ** ** ** ***** *** * ******** ************* Spar_spli: DDDDDD { alias......: ['VPS29', 'PEP11'] chromosome.: 8 description: involved in vacuolar protein sorting end........: 130440 exons......: [(1, 48), (168, 968)] gene.......: VPS29 introns....: [(49, 167)] length.....: 968 name.......: YHR012W plength....: 322 start......: 129473 tdist......: 129473 type.......: ORF up.........: 1 } Scer: 1 donors and 1 branches Spar: 7 donors and 1 branches Smik: 4 donors and 1 branches Sbay: 3 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 434), ('Spar', 434), ('Smik', 434), ('Sbay', 434)] ->[('Spar', 94), ('Spar', 103), ('Smik', 103)] ->[('Spar', 1304), ('Sbay', 1304)] ->[('Sbay', 1153)] ->[('Smik', 400)] ->[('Smik', 1521)] ->[('Spar', 263)] ->[('Spar', 560)] ->[('Spar', 1323)] ] [ ->[('Scer', 528), ('Spar', 528), ('Smik', 527), ('Sbay', 528)] ] 0~120: Scer.....: taagtaagaaa------atcttgtaaatatgtaatcttatgtt--aaccgtagcatcattgtgttggacgaaat------cctctgt--------gatgttctgtgtgattgaaattgta Spar.....: taagtaagaaa---taaaccttgtaaatatgtaatcttat-----aatagcagtagcattgtgttaggcgaaatgttcaacttagcctaccgaagtatgttctgtatgaatgaaattaca Smik.....: taagtaagaaa---ctaatcttgtaaatatgcaaattcacattgaaacagtagcattattgtgttgagcgaaatatccaaccaccgctactggtagatgttctgtatgatttaagttgga Sbay.....: tgagtaaaaataactctatcttgtaaatatgcaatctcat--------aatagtactattgtttaggctggtatcatt--ttactgaaggctacataaatcgtgcatgctgcaggtgaca consensus: * ***** ** * ************ ** * * ** * ***** * * ** * * ** ** * * * Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD 120~240: Scer.....: tggtattttcgatcatacgagtatttttcctaaagatgaaagagaactcgattcctaaacagttgtttgtagggcataacgttgtatcgtaa-a--tacttaccatacgcttaggtatat Spar.....: cgataattttttattca-atgcattttttcttgggagtaaaaagaacttgattt-gaaatagttgtctacagagaataatgttttatcgtaa-c--tacatatcgcctgtttaagtatat Smik.....: tcataatt---agtaaatatgcatttttccccaagactaaagagtaatt-attttgaaagagttggcaacaaaatatagcattatatttata-gcttatttactgtctattcaagtattt Sbay.....: atagacgcttgaaaatatttaaacgtagtgt-gaggttaatgaatatct--tatagtaatgtctggttgtggagatccatgttgtaaccatatattcatttaccacttctttgaa-gtat consensus: * * * * * ** * * * ** ** ** ** * * ** * * * 240~360: Scer.....: tcctttagatttccgtaacacctttcagttttactattccgcgtggcgaggtaaagatcataaaaatacaagt-ttgttatagcatttcctgcaaataattgctgtaactagtggcgaaa Spar.....: tcctttgaatttccataaaacttgtcagttctatttttccgtgtggcgagataaagatcataaaaatacaaaa-ctgttttagcatttcctgcaaataatatctcgaactgatagcgaaa Smik.....: tc------aatttctcaaaacctgccaattctgttattccgtgtggcgagataaagatcgtaaaaatagaagagctactctaacatttcctgca--caactgctgcaaatggtggcaaaa Sbay.....: ttcttcatttttttgcaaaacttgcaagtacagtaattccgtgtggcgagatgaagatcgtaaaaacagaaga-atattccatcttttccttcaaaatactcttgaaatcgacggtagag consensus: * ** ** ** * * * ***** ******** * ****** ****** * ** * * * * ****** ** * * ** * * Spar_spli: DDDDDD 360~480: total....: ====== Scer.....: aggtcatagaattattcgcctaaattATGTTGTTGTTAGCATTAAGTGATGCACATATTCCTGATAGAGCAACTGTATGTGTTATTCTCC---TTTCT-----TCTCTGGTTA-GCTGTA Spar.....: aggtcaaagaa-taatccggtaaattatgttgttgttagcattgagtgatgcacacattcctgatagagcgactgtatgtttttttttc-----tccc-----tctctactta-attgta Smik.....: agatcaaagaagtaacc-tgtatattatgttgttgttagcgttaagtgatgcacacattcctgatagagcgactgtatgttttttccctcacatttctcactttctcacctta-attgaa Sbay.....: atagcaaaggagttattggtacaattatgctgttattagcactaagtgatgctcacattcctgatagagctaccgtatgttgttgtttt------tct------cactcttcacattgat consensus: * ** ** * * ****** **** ***** * ******** ** ************** ** ****** * * * * * * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD known....: >============================================= 480~600: total....: ======= Scer.....: GTGGAACCTATAA-CGGCCATTGCGCCACAACTTCC-TTTAACATTAATACTAACATAT---TGATAA-CGACTTCAATTGCAAGTAGGATTTACCTGTAAAATTCAAAAAATTACTAAG Spar.....: gtgaattctataaatgaccattgcgcc--tactctc-tttaacattaatactaacaaat---tgaaaaatgagttcaattgcatgtaggatttacctctaaaattcaaaaaattactaag Smik.....: gtgtaatttttaaatgtccattgcacc--tactccc-tttaatgtca-tactaacaaat---tgaaaa-cgaacttaattgaatgtaggatttacctcttaaattcaaaaaattactaag Sbay.....: gtaaaagctagaaat-tttactgcgct--tactcccctttaacactcatactaacaattctgtgagaaatgccttcactgcattgtaggatttgcctctaaaattcaaaaaattactaag consensus: ** * * ** * *** * *** * ***** ******** * *** ** * * * * ********* *** * ******************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================>= 600~720: Scer.....: CGTTCCTGATAAAATATCTCAGGTCGCTTTATTAGGTAATAGTACAAAGTCTTATGACTTTTTGAAATTTGTCAATCAGATATCTAACAATATAACAATCGTAAGAGGAGAATTTGATAA Spar.....: cgttcctgacaaaatatctcaggtggctttattaggtaatagtacaaagtcttatgactttttgaagtttgtcaaccagatatccaataatgtaacaatcgtaagaggagagtttgataa Smik.....: tgttcctgataaaatatctcaggtggccttactaggcaatagtacgaagtcttttaattttttgaagtttgtcaaccagatatctaacaatataacaatcgtaagaggagagtttgataa Sbay.....: cgttcctgataaaatttctcaagtggctttactaggaaatagcacgaagtcccataattttttgaagtttgtaaatcaaatatctagtaatataacaattgtaagaggagagtttgataa consensus: ******** ***** ***** ** ** *** **** ***** ** ***** * * ******** ***** ** ** ***** * *** ******* *********** ******** 720~840: Scer.....: TGGGCACTTACCAAGCACGAAGAAAGATAAAGCATCAGATAACTCTAGACCGATGGAAGAAATTCCTATGAATAGTATAATAAGGCAAGGTGCTTTGAAAATCGGCTGTTGTAGCGGTTA Spar.....: tgggcacttgccaagtacaaagaaggatagagcgtcggatagcattagaccaATGGAAGAAATTCCCATGAATAGTATAATAAGGCAAGGTGCTTTGAAAATTGGTTGTTGTAGCGGTTA Smik.....: cgggcacttgccaagtacaaaaaaggatggcgcttccgaaggctctaggaaaATGGAAGAAATTCCTATGAATTGTATAATAAGGCAAGGGGCTTTAAAAATTGGCTGTTGCAGCGGTTA Sbay.....: tgggcatttgccaagcacaaagaaggataaggtatccgaaaactccagaaacctggaagagattcctATGAACAGTATAATAAGGCAAGGTGCTTTAAAAATCGGTTGTTGCAGCGGTTA consensus: ***** ** ***** ** ** ** *** * ** ** * ** ******* ***** ***** **************** ***** ***** ** ***** ******** 840~960: Scer.....: TACCGTTGTGCCAAAGAACGACCCCTTATCTTTGTTAGCATTGGCACGCCAGTTGGATGTAGACATTTTATTGTGGGGTGGTACTCATAACGTTGAAGCTTATACCTTAGAGGGAAAATT Spar.....: TACTGTAGTGCCCAAAAATGACCCCTTATCCTTATTAGCATTAGCACGCCAGTTGGATGTAGACATTTTATTATGGGGTGGTACTCATAACGTTGAAGCTTATACCTTGGAGGGGAAGTT Smik.....: TACTGTGGTACCAAAGAACGACCCCTTATCTTTATTAGCATTAGCACGCCAGTTAGATGTAGATATTTTGTTATGGGGCGGTACTCATAATGTCGAGGCTTACACCTTGGAGGGGAAGTT Sbay.....: TACTGTGGTACCCAAGAATGACCCCTTGTCTTTGTTAGCATTGGCACGCCAGTTGGATGTAGATATTTTATTGTGGGGTGGCACTCATAACGTTGAAGCTTACACCTTGGAAGGGAAGTT consensus: *** ** ** ** ** ** ******** ** ** ******** *********** ******** ***** ** ***** ** ******** ** ** ***** ***** ** ** ** ** 960~1080: Scer.....: TTTCGTTAATCCAGGTAGCTGTACGGGTGCTTTTAATACAGATTGGCCAATTGTCTTTGATGTTGAGGATAGCGATGAAGCTGTGACATCAGAGGTGGACAAGCCGACTAAGGA----GA Spar.....: TTTCGTTAATCCAGGCAGCTGTACGGGAGCTTTTAATACGGATTGGCCAATTGTCTTTGATGTTGAAGATAGCGATGAAGCTGTGACAGCAGAGGTGGAAAAACCCACTAAGGA----GA Smik.....: TTTTGTGAATCCAGGCAGTTGTACGGGAGCCTTCAATACGGATTGGCCCATTATATTTGACGTTGAAGATAGCGATGAAGCTGTAACATCAGGGGTGGAGGAAACTAAGGAGGAT---GA Sbay.....: CTTTGTAAATCCAGGTAGTTGTACAGGAGCTTTTAACACTGATTGGCCAATTGTCTTTGATGTCGAGGATAGTGATGAAGCTGTAACTTCAGAGGTAGAGAAAACACCTAAGGAAAGCGG consensus: ** ** ******** ** ***** ** ** ** ** ** ******** *** * ***** ** ** ***** *********** ** *** *** ** * * **** * 1080~1200: Scer.....: ATCAGTCGGA--GGATGACGATGCCAAGGGTGGATCAACAGGAAAGGAACAACCTGGGTCTTACACGCCTAAAGAAGGCACTGCTGGGGAACGTGAGAATGAGAATGAAAGCAACGTTAA Spar.....: ATGAGCCGGA--GGATGATGGTGCCAAGAGTGGATCAACAGAAAAAGAACAACCTGGTTCTGACATGGCTAAAAAGGGTACAGCTGAAGAGCGC------GATAGTGAGAGTGACGTAAA Smik.....: ACCCATACAACAAAATGATGTAATCAGGGAAGAATCGATGGGGAAAGAACAATCTGGATCTGACATAACCAGAGATAATGCAATCGAAGA------------GGATGGCGCTGACGTGAA Sbay.....: AGCCGGGCAGGAGGACGATGCTGCCAAGGGAGAACCAGCAGAAAAAGAACAATCTGAAACTGACGTAGCTGATGTAAGTGCGGTTG------------------ATGAGAATAAGCTGAA consensus: * * ** * ** * * * * * ** ****** *** ** ** * * * ** * * ** Sbay_spli: DDDDDD 1200~1320: Scer.....: GCCTGAAAACCAATTTAAGGAAGACGAGGTTGATATGTCAGATTCGGATATAAATGGGTCTAATTCACCAAGTTTCTGCCTCTTGGATATTCAAGGCAATACCTGCACGTTATACATTTA Spar.....: GCCAGAAAACCAGTTTAAAGAAGACGAGGTTAATATATCAGATTTGGACGTAAATGGATCTAATTCACCAAGTTTTTGTCTCTTAGATATTCAAGGCAATATCTGTACGTTATACATCTA Smik.....: ATTGGAGAGCCAATTTAAAGAAGACGAGGTCAATATATCAGATTTGGATGTGAAAGGGTCTAATTCGCCAAGTTTCTGTCTGCTGGATATTCAAGGTACCATTTGCACGTTATACATCTA Sbay.....: AGCCGAAAGCCAGTTCAAAGAGGATGAGGTCAATATATCAGATCTGGACATCAATGGGTCTAACTCGCCAAGTTTTTGTCTCTTGGATATTCAAGGCACTACCTGTACGTTATACATTTA consensus: ** * *** ** ** ** ** ***** **** ****** *** * ** ** ***** ** ******** ** ** * *********** * * ** *********** ** Spar_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: TTTATACGTTAATGGAGAAGTGAAGGTCGATAAAGTGGTTTATGAAAAGGAATAGggtagccattttcatttttatgcatttctatgatgtctaaacattagatgcattcgtg----aac Spar.....: TCTGTACGTCGACGGAGAAGTAAAAGTCGATAAAGTGGTTTATGAGAAAGAGTAGggtagc-attgctattt--atgtgttcctgtgatctctcgatattacgcggattcgtg--aattt Smik.....: TCTTTATGTTGACGGTGAAGTGAAGGTCGATAAAGTGGTTTATGAAAAGGAATAGgatagcctttaccacttt-atgtgcttctgtgatgtcttagaactgagtagccttgttttgtgat Sbay.....: TCTTTACGTTGATGGGGAAGTGAAGGTCGATAAAGTTGTTTATGAGAAGGAATAAggcaaccgttaccatttt-atgcgtttctgtaaaatcttgagattacgaggcctagtc--gtaaa consensus: * * ** ** * ** ***** ** *********** ******** ** ** ** * * * ** * ** *** * ** * * *** * * * ** Spar_spli: DDDDDD 1440~1560: Scer.....: tttttcttgcagacgagat----agat-gtaattaagat-atcc-tatctgccggatattacatatat--aaaaaaagaaagcttgcatgcacagtttccttactattcatgctcacaca Spar.....: ttttctttacagacaagatagatgaac-atgatcaagag-tatcctatccatcggatattacgcata---gtaaaaagagcgtctgcattcatagtttccttactatttatgctcacaca Smik.....: tttttttcgcagacaagattagtagat-atcttcaagag-tatc-tacccattgaatattacaaat----aataaaagagagttcgtattcctagtttctttactatttgtgctcaggtg Sbay.....: cttttattttttacaagagagatagattggaaccaagaaatatcatgttctttgaatattccgcataataatcaaatgaatgtctgcacttctcgtttgtttactacaaatactggcacg consensus: *** * ** *** * **** * * * ***** * ** *** ** * * * **** ****** * ** Smik_spli: DDDDDD 1560~1673: Scer.....: attc-taccgaattagcactgcagtgtttagaaccgtgctcaaaaagagctaacagagcttgtgaagaagc--ctggatgaaaatatactacgttt-atataggttgatttaa Spar.....: attc-tacagagttagcactgcaacacttagagccatgctcaaaaagagctaccaaagcttacgaagaagt--ctggatgaaaatatactgtgtcctatatagattggtttaa Smik.....: atca-aactggattagcattgggacgcttagagccgtgatcaataaaagcatacagaacatacaaagaaac--ctggatggagaactactatgttttatatagatcgaattaa Sbay.....: gttcgaaaaaaagtaacact-tggcacttaattctgcatttagaagaaacat-cagaacatttaaagaagtaatcggatgaaaatgtagtatactctatatagattggtttaa consensus: * * ** ** * *** * * * * * * ** * * * ***** ***** * * ** * ****** * * **** { alias......: ['YSC84', 'LSB4'] chromosome.: 8 description: SH3 domain in C-terminus end........: 138446 exons......: [(1, 47), (216, 1575)] gene.......: YSC84 introns....: [(48, 215)] length.....: 1575 name.......: YHR016C plength....: 525 start......: 136872 tdist......: 136872 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 3 donors and 2 branches Smik: 6 donors and 2 branches Sbay: 3 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 302), ('Spar', 302), ('Smik', 302), ('Sbay', 302)] ->[('Scer', 1448), ('Spar', 1448), ('Smik', 1448), ('Sbay', 1448)] ->[('Scer', 812), ('Spar', 812), ('Smik', 812)] ->[('Scer', 62), ('Smik', 62)] ->[('Sbay', 2069)] ->[('Smik', 1247)] ->[('Smik', 2002)] ] [ ->[('Scer', 428), ('Spar', 428), ('Smik', 428), ('Sbay', 428)] ->[('Scer', 1805)] ->[('Smik', 1421)] ->[('Spar', 2082)] ] 0~120: Scer.....: ttttatttgtttttttgagagc-aaatatcttctgtt-gtctgtt--ttatatttcctgtttgtatgccacct--acaacatttttacatgttccgacgctgaccgaaaacgacctgaag Spar.....: gtttattagtcctttttagagctcaatattttcagtt-gtctgtt--ctatatttcgtgtttgcatgccactt--tctataattttacatgctccgacggtgaccgaatacggcctgaag Smik.....: ttataattgctctcttaaatattcaatgttctccaccagtttactacctttatttcgtgtctgtatg-cattt--tctatacttttacatgctccggcggtgaccaaatacggcctgaag Sbay.....: -------------------tgttttatgttcttggct-ttctgt---ttaaatatcatatttctatgctggctagtcgccaacttttcgtaccccgataatgaccaaacacggcccgaag consensus: ** * * * * * ** ** * * * *** * * * *** * * *** ***** ** *** ** **** Scer_spli: DDDDDD Smik_spli: DDDDDDD 120~240: Scer.....: ggaattaaagttgacta-------ccccctaactagaccctgttcttaacattatctataacatgaaact-atcttacacttcacagt-aaaatt-ttcaagagtagtggtaat-atcaa Spar.....: ggaattaaagttgatcgcctctccccccctaactagaccctgttctgaacatta--tataagacaaaact-atcttatactctacagtaaaaatt-gtcaatacgagtgctaat-acc-- Smik.....: ggaattaaagttcaccg------cccccctaggtagaccctgttatgaacagta--tttaacacagaact-at-ttagattgtataaagaagaac-ctcaagactggcgttaat-at--- Sbay.....: ggaattagagtta----------tccccctaactagaccctgtcttatatgaga--ttttaaacagatttgaactcatattatatagcaaaggatagccaaatataacacaagtcagcgt consensus: ******* **** ******* ********** * * * * * * * * * * * * * * * * ** *** * * * 240~360: total....: ====== Scer.....: atccaaaatccaaaaATGGGTATCAATAATCCAATTCCTCGAAGCTTGAAAAGCGAGACCAAGTATGTTCATAT--ATATGCTTCCTGCTGCCCCTCCT-CTAAACTTATGGATGCAGCT Spar.....: -----aaatccaaaaatgggtatcaataatccaattcctcgaagcttaaaaagcgagaccaagtatgttcattt--atttgtttcttgctggtcttcta-caaatttaatggatgcaggt Smik.....: ----aaaatacaaaaatgggtatcaataatccaatccctcgaagtttaaaaagtgagaccaagtatgttgatat--atttgttcttaacaggtcttcttatgaatctaatggacacaggt Sbay.....: taaacaacatcaaaaatgggtttcaacaatcctatcccacgaagcttaaagagcgagactaagtatgtcaaaattgattcctctttagtcgaatccctt-ttcgcccaaggaacacagat consensus: ** *********** **** ***** ** ** ***** ** ** ** ***** ******** * * ** * * * * * *** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >========================================================= 360~480: total....: ======= Scer.....: AAAATGTTCAAGATAGCTCTCTAGTCTGTGTCCATTGCTTATGGGGCATGAGTTTTC-AAAAGTAATGTACTAACAAC--TTTATGATTGATTTATTTCGAATGTTTTAACTACAGGAAG Spar.....: aaaaagaccgaaatagttctctggtctgtgtccattgttgataggacATGTGTTGCC-AAAAGCAATGTACTAACAAT--TATATGATTGATTCA-TTCGATTATTTTAACCACAGGAAG Smik.....: aaagagtcagaagtagtttgctgatcttggtacattgttaatagattatgagttgctgaaaaataatatactaacaat--cttatggttgattaattttaattatttttactacaggaaa Sbay.....: aatcattctta-gcagttttccattctgttttcgttgttcacgaaacatcgatcaca-ataaacaaaatactaacgattatttgtaattgatttattttgattatct---ctacagaaaa consensus: ** * ** * * *** * * *** * * ** * * ** ** ******* * * * ****** * ** * * * * * **** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==================================================================================================================>= 480~600: Scer.....: GCCGCGAAAGTTCTAAGGAGTTTTGTTAAACCAAATCAAGTATTTGGAGCAGACCAAGTTATTCCACCATATGTGCTAAAAAGAGCTAAAGGTCTAGCAATTATCACGGTTTTAAAGGCT Spar.....: GCTGCGAAAGTTCTAAGAAGTTTTGTTAAACCAAATCAAGTATTTGGAGCAGATCAAGTCATCCCACCATATGTGCTAAAAAGAGCCAAAGGCCTAGCCATTATCACGGTTTTGAAGGCT Smik.....: gccgctaaagttttaagaagttttgtcaaaccaaatcaagtatttggagcagaccaagtcattccaccatatgtgttaaaaaaagccaaaggcctagcaattatcacagttttgaaggca Sbay.....: gccgcaaacgttttgagaagttttgttaaaccaaatcaagtgtttggagcagatcaggtcattccaccatatgtgctaaaaaaagccaaaggtctagccattataacggttttgaaggca consensus: ** ** ** *** * ** ******** ************** *********** ** ** ** ************ ****** *** ***** ***** ***** ** ***** ***** 600~720: Scer.....: GGCTTCTTGTTTTCAGGGAGAGCAGGTTCTGGGGTGATTGTGGCCAGGTTAAAAGACGGTACATGGTCGGCTCCCTCTGCTATCGCTATGGCAGGTGCTGGTGCAGGTGGTATGGTCGGC Spar.....: GGTTTCTTATTTTCAGGGAGGGCAGGATCTGGCGTAATTGTGGCTAGGCTAAAAGATGGTACATGGTCTGCTCCCTCTGCTATAGCTATGGCAGGTGCTGGTGCAGGTGGTATGGTCGGT Smik.....: ggattcttgttttcgggtagggcaggatctggcgtgattgtggctagattaaaagatggtacatggtctgccccctctgctattgccATGGCAGGTGCCGGTGCTGGTGGTATGGTCGGT Sbay.....: ggtttcttattttcaggaagagctggttcgggtgtgattgtggccagattgaaagatggttcatggtctgctccttccgctattgctATGGCGGGTGCCGGTGCCGGTGGTATGGTCGGT consensus: ** ***** ***** ** ** ** ** ** ** ** ******** ** * ***** *** ******* ** ** ** ***** ** ***** ***** ***** ************** 720~840: Scer.....: GTTGAATTGACAGATTTTGTTTTTATTTTAAATTCGGAAGAGGCAGTGAGGTCCTTTTCTGAATTTGGTACAATTACTTTAGGTGGTAATGTGTCAGTTTCCGCAGGTCCTCTTGGAAGA Spar.....: ATTGAATTGACTGATTTCGTCTTTATTTTAAATTCTGAAGAAGCAGTGAAGTCTTTTTCTGAATTTGGTACAATTACTCTAGGTGGCAATGTGTCAGTTTCCGCAGGCCCTCTTGGAAGA Smik.....: GTTGAATTGACTGATTTCGTTTTTATTTTGAATTCCGAAGAAGCAGTGAAATCCTTTTCTGAATTTGGTACTATTACTCTAGGTGATAATGTGTCAGTTTCCGCGGGTCCTCTTGGGAGA Sbay.....: ATTGAACTGACTGATTTTGTCTTCATTTTAAATTCTGAGGAAGCGGTGAGGTCGTTTTCTGAATTCGGTACGATCACTTTAGGTGGTAATATATCAGTTTCCGCAGGTCCTCTTGGTAGA consensus: ***** **** ***** ** ** ***** ***** ** ** ** **** ** *********** ***** ** *** ****** *** * *********** ** ******** *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 840~960: Scer.....: AGTGCAGAAGCTGCAGCTTCTGCATCCACAGGTGGTGTCTCGGCAGTTTTTGCCTATTCCAAAAGCAAAGGTTTATTTGCCGGTGTGTCTGTGGAAGGTTCAGCCATCTTGGAGAGAAGG Spar.....: AGTGCAGAAGCTGCAGCTTCTGCGTCTACTGGTGGTGTTTCAGCAGTTTTTGCTTATTCCAAAAGTAAAGGTTTATTTGCCGGTGTGTCTGTGGAAGGTTCAGCTATCTTGGAAAGAAGA Smik.....: AGTGCAGAAGCAGCAGCCTCTGCTTCCACAGGTGGTGTCTCAGCAGTTTTTGCTTATTCCAAGAGTAAAGGTTTGTTTGCAGGAGTATCTGTGGAAGGTTCAGCTATTTTGGAAAGAAGG Sbay.....: AGTGCTGAAGCAGCAGCATCTGCATCTACAGGCGGTGTCTCAGCTGTTTTTGCTTATTCAAAGAGCAAAGGGTTATTTGCAGGTGTCTCTGTAGAAGGTTCAGCCATCTTGGAAAGAAGG consensus: ***** ***** ***** ***** ** ** ** ***** ** ** ******** ***** ** ** ***** ** ***** ** ** ***** *********** ** ***** ***** 960~1080: Scer.....: GAAGCTAATCGAAAGTTTTACGGCGATAACTGTACATCAAAGATGATTTTGTCAGGTAGAGTAAAAGTTCCACCAGCAGCAGACCCCCTACTCCGTATCTTGGAATCAAGAGCGTTCAAC Spar.....: GAAGCTAATCGAAAATTCTACGGCGATAACTGTACATCGAAAATGATTTTATCAGGTAGAGTAAAAGTTCCACCAGCAGCAGACCCCCTACTCCGTATTTTAGAATCAAGAGCATTTAAC Smik.....: GAAGCTAATCGGAAATTCTACGGTGATAATTGTACATCAAAAATGATTTTGTCAGGGAGAGTAAAAGTTCCACCAGCTGCTGATCCTTTGCTCCGTATCTTAGAATCAAGAGCATTCAAT Sbay.....: GAAGCTAATAGAAAGTTCTATGGCGATAATTGTACTTCAAAGATGATTTTGACAGGTAAAGTAAGGGTTCCGCCAGCAGCAGATCCCTTGCTTCATATCCTAGAATCAAGAGCGTTTAAC consensus: ********* * ** ** ** ** ***** ***** ** ** ******** **** * ***** ***** ***** ** ** ** * ** * *** * *********** ** ** 1080~1200: Scer.....: TTTACACGCCACGACCATGATGACAACGCTAGCGGTGATGATTTTTATGATGACGGTCAATACAGCGACAACACAAGCCATTATTACGACGATATTCCAGATTCCTTTGATTCTACTGAT Spar.....: TTCACACGCCATGACCATGGTGATAATGTTAGTGATGATGATTTTTATGGTGAAGATCAATACAGCGATAACACCAGTCATTATTACGATGACATTCCAGATTCCTTTGATTCTACCGAT Smik.....: TTTACACGCCGCGACCATGGTGATAATGACAGTGATGATGGTTTTCACAATGATGGCCAATACAGTGATAATACCAGCCGTTATTATGATGACATACCTGATTCCGTTGACTCTGCTGAT Sbay.....: TTCACAGGACCCGGCCATAATGATGATG------GTAACGAACTTTATGATGACGACCTAAACAGCGATAATAATAGCCGCTACTATGATGACATTCCAGACTCCTTTGATTCTGCTGAT consensus: ** *** * * * **** *** * * * * * ** * *** * * * **** ** ** * ** * ** ** ** ** ** ** ** *** **** *** * *** 1200~1320: Scer.....: GAATCCTCAACACGTCCAAACACAAGATCATCAAGAAGAAGAGGAATGTCGCTGGGGTCACGCAGTCGTTATGATGATGATTATGATGATGATGGTTACGGACGTGGTCGCGGGTATGGA Spar.....: GAGTCCTCAACACGTCCGAACACAAGATCATCAAGAAGAAGAGGAATGTCACTAGGATCACGCAGTCGTTAT---GATGATTATGATGACGATGATTACGGACGCAGCCGCGGATATGAC Smik.....: GAATCCTCCATGCGTCCGGACACAAGAGCATCAAGAAGGAGAGGGATGTCAGTGGGATCCCGCAGTCGTTAT---GATGATGATTTTGATTATGATTATGGACGTACCCGTGGATATGAC Sbay.....: GAATCCTCAACACGGCCAAACACAAAATCATCAAGAAG---AGGAATGTCACAAGGATCTCGCAGTCGTT------ACGAAGGTCCGGATTATG---------------------ATGCC consensus: ** ***** * ** ** ****** * ********** *** ***** ** ** ********** * ** * ** *** *** Smik_spli: DDDDDD 1320~1440: Scer.....: GATTTTGATAGCGAAGATGAAGATTATGATTACGGAAGATCTCCAAATAGAAACAGCAGCCGCAATAGAGGCCCACAGATAGATAGGGGTACTAAGCCGCGTGCGAATACCCGATGGGAA Spar.....: GACTTTGATAGCGGAGATGAGGATTACGACAACGGAAGATCTCCAAATAGAAATAGCAGCCGCAATAGAGGCCCGCAGATAGATAGGGGTACTAAGCCGCGTGCCAATACTCGATGGGAA Smik.....: GATAATAACAGCAGCGATGAAGATTATGATCACAGAAGACCTCCAAATAGAAATGGCAGTCGCAATAAAGGACCTCAAATAGATAGAGGTACTAAGCCACGTGCTAACACTCGGTGGGAA Sbay.....: GAATTTGGCAGCACCGATGACGACTATGATTACGAAAGATCTCCCGACAGGAATGCTGGCCACAACGGAGGCCCACAAGTAGACAGGGGCACTAAACCGCGCACAAATACTCGATGGGAG consensus: ** * *** ***** ** ** ** ** **** **** * ** ** * * *** *** ** ** **** ** ** ***** ** ** * ** ** ** ***** Smik_spli: BBBBBBB 1440~1560: total....: ====== Scer.....: GATGATTTGTATGATAGAGATACTGAATACTCCCGTCCCA---ACCATTCCGGTAGGGATTATGATAATACCCGAGGAAATAGGCGTGGTTATGGTAGAGAAAGGGGTTATAGCCTTGGT Spar.....: GATGATTTGTATGATAGGGATACTGGATACTCCCGCCCTACCCATCATTCCGGCAGGGATTATGATTATACCCGAGGAGATAGGCGTAGTAATGGTAGGCAAAGAGGTTATAGCCTTGGT Smik.....: GATGACTTGTATGATAGAGATGCTGGATATTCCCGTCCTCCTCACTACTCTAGCAAGGATTTTGATAACACTAATGGAAATAGACGCAGTTATGGTAGAGAAAGAGGTTATAGTCTAGGT Sbay.....: GATGATTTGTATGACAGAGATTCTGGATATGCC------------------GGTAAAGATTTTGACAACACTCGAGGAAATACAGGTAGCAATGGTAAAGAAAGAGGCTATAGCCGAGGA consensus: ***** ******** ** *** *** *** ** * * **** *** * ** *** *** * * ****** **** ** ***** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1560~1680: Scer.....: CATGGCCCAACTCACCCCAGCAATATGAGCAATGTCGATGATTTATCACATAAAATGTCGAAGACAGGGTTAGGTAATGAATCCACTGCTACAA------------------ATTCGGCG Spar.....: CACGGTCCGACCCACCCCAGCCATATTAGCAATGTCGATGACTTATCACATAAAATGTCAAAAACAGGGTTAGGCAATGAATCTTCAAGCACAA------------------AGTCTGCA Smik.....: CATGGCCAATTTCACTCCAGCAGTAACAGTAATGTCGACGATCTCTCACATAAAATGACAATGACAGGAATAGACGATGAGTCTTCTGGTGCCA------------------AATCGTCA Sbay.....: TATGGTCAAGCCTATTCCAACGGCGATAACAAAGCTGATAACTTATCGCATAAAATGTCTAAAACAGAGATTGATGATAATCATTCTAGGGTCAAGCTACCCACATCTCTTCAATCGCCA consensus: * ** * * *** * * ** * ** * * ** ********* * * **** * * ** * * * * ** * 1680~1800: Scer.....: ACACCAACGGCTGTTGCTCTCTACAATTTTGCTGGAGAACAACCAGGCGACTTGGCTTTCAAAAAAGGTGATGTTATTACTATCTTAAAAAAATCAGATTCTCAAAATGATTGGTGGACA Spar.....: ACGCCAACAGCCATTGCTCTCTATAATTTTGCGGGAGAACAACCAGGCGACTTAACTTTTAAGAAAGGTGACGTTATTACTATCTTAAAGAAATCAGATTCTCAAAACGATTGGTGGACG Smik.....: ACTCCAACAGCTGTCGCTCTCTATAATTTTGCAGGAGAACAATCAGGAGATCTAGCTTTCAAAAAAGGTGACGTTATTTCCATTTTGAAGAAATCTGATTCCCAAAATGATTGGTGGACA Sbay.....: ACCCAAACAGCTGTTGCTCTCTATAACTTTGCAGGAGAGCAATCTGGCGATTTGGCTTTTAAGAAGGGTGACGTTATAACCATCTTGAAGAAATCAGATTCCCAGAATGATTGGTGGACG consensus: ** * *** ** * ******** ** ***** ***** *** * ** ** * **** ** ** ***** ***** * ** ** ** ***** ***** ** ** *********** 1800~1920: Scer.....: GGCAGGACTAACGGAAAAGAAGGAATATTCCCTGCAAACTACGTTAGAGTTTCTTAAattatcgtcctccatatgtctcgttcctatatatagaatttttttttagagtta-tgaagttg Spar.....: GGAAGAGCCAACGGCAATGAAGGAATATTCCCTGCAAATTATGTTAGAGTCTCTTAGcccaatttctgccatattatctgtccctatatatagaa-ttcttttcagagtag-aggagttg Smik.....: GGAAGGGCTAATGGCAAAGAAGGGATTTTTCCTGCAAATTACGTTCGAGTTACTTAGctcgactgtcgttatacattttgttcctatatgtggaaattcttttcagagttg-tgga-ttg Sbay.....: GGAAGGGTTAATGGCAAAGAAGG-TTCTTTCCTGCAAATTATGTTCGAGTTTCTTAGCTTGATAA-CGTCATACACATTCTGCTTTTGTATATATCCATTTTCCAGAATTATTGAAACTG consensus: ** ** ** ** ** ***** * ** ******** ** *** **** **** *** * * * * * * * *** *** * * * ** Scer_spli: BBBBBBB 1920~2040: Scer.....: aggatgggttccttattcagctatgtttacgaaatgtttgtagttatataatcacaatggaaagcttcgaggaaccacttct-taagtactcacttagtaggtggagtatttcttgaaac Spar.....: aacatgggttcc-cattaagctatgtttacgaaatgtttgtatttatataattac-ttagaaagctttcgagtatcacttctgttagtactca-ttatcaagcaga--attttttggaac Smik.....: aacattagctct-ccttcagt--tctttatgaaacgtttgtatttctataattat-gcagcaag-tttgagcaatctcttctgttaagttttcgttataaagtaa---ggattttgagaa Sbay.....: AACAATGGAGCC-CATGCAGTTATGTTTATGAAATCCGTGTAGTTATATAGttat-tcaagtgattttaggaagtctcttttgtcaagctcttatgatcagagcctttcgaatttgaatg consensus: * * * * * ** * **** **** **** ** **** * * ** * *** * * * * * * *** Smik_spli: DDDDDD 2040~2160: Scer.....: tggactata-cgccattaaact--aaa-----aaaaaatcgaggctgaaa------ctcct--tggaataattctgggtagat-taagatagcaaagaaaacaatactctatttttat-a Spar.....: tggagaaca-cgcctttaaattaaaaa-----aaaaaatcgaaactaact------cctct--ctgaatagctctaagtagat-taagatagcaaagaaaacaatattccatttttataa Smik.....: taaa-tatg-caccatcaattcatcaatatgtaattaatttcagttatat-ttttcttcct--cagagtaactccaaagaattctgaaatagcaagtataacaaaactatattattat-a Sbay.....: tggtaaatagcgactttaccggcttagtggtatgaaagctgggtctacacgatgtttttctggtggaactatttcaacatgtgataaaatagcaagcaaaatgacatttcttttctat-a consensus: * * * * * * * * * ** ** * * * ******* * ** * * * ** *** * Spar_spli: BBBBBBB Sbay_spli: DDDDDD 2160~2233: Scer.....: gacatacgta---cttttgtaccgaaaattgcatattgatgaacct--gccttcttc--ctttaaaaggaa-- Spar.....: aaaatacgta---tatttgtactg-gaattgtacattgataaactt--ttctttctcttttttaaaaggggt- Smik.....: gaaatacgta-attgtttgcacag-aaagaatacattgataaactt--ttttctccttcctttcaaagaatgt Sbay.....: gaaatacgtatcttctttgtgttg-aaagtatatattagtaaactttattttttctctcttttcaaagaagat consensus: * ******* **** * ** * *** * *** * * *** **** { alias......: ['RPS27B'] chromosome.: 8 description: 40S Ribosomal protein S27B (rp61) (YS20) end........: 148660 exons......: [(1, 3), (554, 799)] gene.......: RPS27B introns....: [(4, 553)] length.....: 799 name.......: YHR021C plength....: 266 start......: 147862 tdist......: 147862 type.......: ORF up.........: 0 } Scer: 10 donors and 2 branches Spar: 0 donors and 0 branches Smik: 7 donors and 2 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 762), ('Scer', 766)] ->[('Scer', 921), ('Smik', 921)] ->[('Scer', 1734), ('Smik', 1734)] ->[('Scer', 2965), ('Scer', 2961)] ->[('Scer', 1081)] ->[('Scer', 2012)] ->[('Scer', 2301)] ->[('Scer', 3130)] ->[('Smik', 375)] ->[('Smik', 1866)] ->[('Smik', 2376)] ->[('Smik', 2732)] ->[('Smik', 2832)] ] [ ->[('Scer', 1431), ('Smik', 1431)] ->[('Scer', 1817), ('Smik', 1817)] ] 0~120: Scer.....: gggtttataatcaagatgtatccgctggagaattcgcctctcttacgtgacaaagagaagacctgtgttattgaaactggaggaggaggtaatacaagcttcgaaagccattcagtaaca 120~240: Scer.....: actactctagatgaaccaaaaaaacctacaacaaaaaagggtgaacaaacgccaacgaaaacgtgcttggctaaaaacgctaccactcgaaggtcaaatgaaagtccgtcgaatgatgaa Smik.....: ---------------------------------------------------------------------------------------------------------------------cat consensus: * 240~360: Scer.....: aagaaaaaaataaaaaaaggcataatagcctgctgcttaatgtgaaaataaaaaacaagaagaacatgtatatat-atgtactttattagaaagtgaaaagatctgttcattgt-gacag Smik.....: gggaaaccgacaagactgtatataaatgtatacatatatatatatatatatatctttgaaggaagataaaaaaatgacttgaccaaaaaaaccgtgcaaatcagtatcgattgtcgattc consensus: **** * ** * **** * * * * ** * * *** * * *** ** * * ** * * * * * *** *** * * ***** ** 360~480: Scer.....: ctatctacttattatctattttataaatcccataaattctttccatattacttacgtctattataaccttccgcgtaaaaaagaaatattgacatcctttcttgtatttagcccatacat Smik.....: ctatttactttttatgtatgtgtcatata--aggaatgatatctttatt-----ctcccaataca---------ggaaaatttaaaagtggacggtattatacata-tgaacccatacac consensus: **** ***** **** *** * * ** * *** * ** **** * * * ** * * **** *** * *** ** ** * * ******** Smik_spli: DDDDDD 480~600: Scer.....: tttca---cccatgcaccattggattataaagaaaaaaatttaataaaaatctgccggggaaattt-cagaagaaaaaaggaaggtgtgttcgcatttaacacgggccaccataaacttt Smik.....: ttatgaaccccgtacatcttttgtcttagaaaaaaagaacggaaaaattatcagtagtgaaattttcctaaagaaaaatgaaaagcgcagtgacattcaacccagaccgctgtagg-ttt consensus: ** *** * ** * ** * * ** **** ** ** ** *** * * * ** *** * ******** * ** * * * **** *** * * ** * ** *** 600~720: Scer.....: tgtttgccacccatctagacgggatccgccccgcccaaggctctcttcctctagctaggcaatgtggctctcggaaaggaaactcccaccagg------acgtggtgggaaatgcagcaa Smik.....: tgtttgcctcccatttcgagggagtctgcctaactaatgccccccattctccaggtaggttgtgtcgcttctgg-gaggaaactctctctaggcgcggtggatagtaggaaacagtgcga consensus: ******** ***** * ** ** ** *** * * * * * * * *** ** **** *** *** ** ********* * * *** * ** ***** ** * 720~840: Scer.....: ttcccctctgcttcccgctgacctttcttgggcccag-tttagtaagtatgctctcatctttcatgtgtgctgtaacttgcaagtcattaacactatctataattgatattagacgttaa Smik.....: tcctctccttggatccgctcacctttctcggcccttgctttagtaggttagctcacatctttgatgtctgctgcgtcttgaaagtccttaacattatctgtaactattattatacgttag consensus: * * * ** ***** ******** ** ** * ******* ** **** ******* **** ***** **** ***** ****** ***** *** * ***** ****** Scer_spli: DDDDDDDDDD 840~960: Scer.....: aagttctatatagcatttgcttttatttagagaatacgaaaacacaccagataattagtgcatatatattagatcaatATGGTATGTGAAAGAGATATT-AAACATAAGATGTGAAGGAA Smik.....: gatttcttcaaagtgctta-ttttattaaaagattacaaaga-acaccagataattagtgcatatatattagatcaatatggtatgtgaaaaagacgttaaaatattcgattggaaggaa consensus: * **** * ** ** ******* * *** *** ** * ************************************************ *** ** *** ** *** ******* Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >====================================== 960~1080: Scer.....: ACAGAAGAGAACAATATTTGAGGAA-TGAATTCGGATGAAATTCTAGTAGAAGAAAAAAGCCTAAAATAAAAAGAAAGAAAGGAAAATAAAGCAGTAATCAACCTCTGACATTTGATAGG Smik.....: gtagaag-gaatgatactccaggaattagataaacatataacctcatcaaaaaagatacgagtaaactaaaatgaa--aaaggaaaagaaaatattagttgatatccaatgtttaagcag consensus: ***** *** *** * ***** * ** ** ** * * ** * * * * **** ***** *** ********* *** * ** * * ** * *** * * known....: ======================================================================================================================== 1080~1200: Scer.....: A--GTATGCGTTTCCGCAAAATCAACAAATCATGCATTAAACTGGTAACGGAGACTTTAAAGACGTGCAAAGAAAGCAATTAATTTTTAGATAGGGAATTGAAAGGCTCTGTAT---AGC Smik.....: aaggtgtaaatagctataaagtcaacaaataacacatggaactaataatgtattttttcaagaactaaaattaaagt-----gttcccactgattgggtaaaaaggctttgtattaaggc consensus: * ** * * * *** ********* * *** **** *** * * *** **** * ** **** ** * * * * ******* ***** ** Scer_spli: DDDDDDDD known....: ======================================================================================================================== 1200~1320: Scer.....: AGAAA---ATTTGAGATCTACTGTGGAGATAAGCATATGGTGTTGAGT-TATGGGTAATCTA-----ACAATAATAGAAACTTATAGCAG-TTGAAGATGGCGGATCATGATGCCGGATA Smik.....: tgaaatgtgtttggaatcaactatgatgatacggttatggtattggctacattgaatattcattcgcataagaacaggaatcatcagcggtttaaggatcagagctcttaataatggata consensus: **** **** *** *** ** **** * ****** *** * ** * ** * * ** ** ** ** *** * ** * *** * ** * ** ***** known....: ======================================================================================================================== 1320~1440: Scer.....: C--TGCTGGGTAATGATTTATCCTTCTTTTTTTGGAGCA-CAAATGCTCAC-TTTTTCCTGTCTCCTCTAACTTTTCTGATGTATCCTACCCAACCCTACAGTTTTCAAATTACTAACAT Smik.....: cctcgctacgaaatgatttagaattatatttttgcagcagaaaATGCTTATATTTTTCCTAACTCCTTTCACTTTTCTTGTATATTCTACC---CTCCTCATTTTTCAGATTACTAACAT consensus: * *** * ********* ** * ****** **** ******* * ******** ***** * ******** * *** ***** * * ** ****** *********** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 1440~1560: Scer.....: CAATTTTTTTGTGAAACGACTTTCGTTTTCGTTTCTATTTATTTCATTACAGGTTTTAGTTCAAGATTTGTTGCACCCAACTGCTGCTTCTGAAGCCAGAAAGCACAAGTTAAAGACTTT Smik.....: TTTTTTTTTTGAAACACTTAACTGTTTTTCGCTTTCATTTTCTTTATTACAGGTTTTAGTTCAAGATTTGTTGCACCCAACTGCTGCTTCTGAAGCCAGAAAGCACAAGTTAAAGACTTT consensus: ******** * ** * ****** ** **** ** *************************************************************************** known....: ==================================================>= 1560~1680: Scer.....: GGTTCAAGGCCCAAGATCCTACTTCTTGGATGTCAAATGCCCAGGTTGTTTGAACATCACCACTGTTTTTTCTCATGCTCAAACTGCTGTCACTTGTGAATCATGCTCTACTGTCTTATG Smik.....: GGTTCAAGGTCCAAGATCTTACTTCTTGGATGTCAAATGTCCAGGTTGTTTGAACATCACCACTGTTTTTTCTCATGCTCAAACTGCTGTTACTTGTGAATCATGCTCTACCGTCTTATG consensus: ********* ******** ******************** ************************************************** ******************** ******** 1680~1800: Scer.....: TACTCCAACCGGTGGTAAGGCCAAATTATCTGAAGGTACTTCTTTCAGAAGAAAGTAAgttaatttatttttttgtgtagttaaaatcatcttcttttatctaaatatataaatataaat Smik.....: TACTCCAACCGGTGGTAAGGCCAAATTATCTGAAGGTACTTCTTTCAGAAGAAAGTAAgttaattta-ttttttgtatagttaaggtcatcttcttttatctaaatatataaatataaat consensus: ******************************************************************* ******** ******* ********************************** Scer_spli: DDDDDD Smik_spli: DDDDDD 1800~1920: Scer.....: ttacttttaatcaattaaattaaccttttagaatcggaaaggatacgctaaggaggcgatgttgaagtaggtcggcaggttcattatatatttaaataatgaattttccaatgatgttta Smik.....: ttacttttaatcaattaaattaaccttttagactttgcaacagtgttccccag---------tcaagtgagtcccaagcagcttcatatattc---------cttttagcttgaggtgca consensus: ******************************** * * ** * * * * **** *** ** * * ******* **** *** ** * Scer_spli: BBBBBBB Smik_spli: BBBBBBB DDDDDD 1920~2040: Scer.....: aaaggagaggaacattcttgacattgttaatcttatgatcaaaggcacaatccgtaggagaggaggttttgtcatttgaattgtatcgtacagtaagtttctctagtattcttagtaatg Smik.....: aaatcaggg-----ttttaaatggcatt--tgttcagagcaaagtccaaaatagtaaaagcttaggccttgctggttaa---gaataatgttgataat-----tagtagt-ttagta--g consensus: *** ** * ** * * ** * ** ** ***** * ** *** ** *** *** ** * * ** * * * * ***** * ****** * Scer_spli: DDDDDD 2040~2160: Scer.....: accataaaagtgcagatatagtcctcgaccctgtagccacagttagctgctgtggtgttaaacaaaggcatttcatccgagcgtaacctctttgtaggagttaaatggagtatcgtgata Smik.....: gttctaataattaagaataagtc------------------gttctttcttaagttatgtaagagaagtatataaaacacgcgataattggttgt----gttacgcctaatg----gtta consensus: *** * * *** **** *** * * * * * ** * * * ** * * * *** * * **** **** * * * ** 2160~2280: Scer.....: gagcccaatactatatccacaatagtgataatgatagtaacatttgatacatcgaataccctaatagtaataccagtcacatttggttagaaatcgctggtaacattactgataccattt Smik.....: aaacataattcggaa----aattaatgataa-gattctagt-tctggcttatcg-----tcttata-tacta--agttccgatcaattaatcgatttctatctcattactg-cggtaatt consensus: * * *** * * * ** ****** *** ** * ** **** ** *** ** ** *** * * *** * ******** * ** 2280~2400: Scer.....: tttggtattaaaatctatactgtaagtgccagaagcataaatgatgcacctggaattacatgtatacatgttattgcaatggtcattataccgggcataaatgtcactggaaatagt-ga Smik.....: tctattataaaaacttgc-ctactcccact-tatacgaagaacatatagttgtaatcacttattccaaca--aataaaatggctctccaaattcttgtatgcccttcttgaattcttctt consensus: * * *** **** * ** * * * * * ** * ** *** ** * * * * * ***** * * ** ** *** * * Scer_spli: DDDDDD Smik_spli: DDDDDD 2400~2520: Scer.....: aagctgctgttaggaataaggttttaaaataactcaataaccgaaccagaattttcttatttttttcactaaggataattgtttctgtctgaaattatataaaacacatgcggattagtt Smik.....: gaatctttcttcacgtcagagtgttt---tcttccgattattgattta-----ctcttgttgcccacaatcattagaataattttcaact--aattgtttgg---gcgtgtggcgtagtc consensus: * * ** * ** ** * * ** * ** * **** ** ** * * * *** *** ** **** * * * ** ** **** 2520~2640: Scer.....: caccttaaataccaccaatacaatagaagattgggtagtcacgatatatttaatgtgacacccattttactcatatatatgacttgcactctaatgttcaactaatagggccttacctca Smik.....: ggtagcgcgctcccttagcatgggagaggtctccg------------gttcgattccggactcgtccaatttatctttttgatac-ctttctcaagcccatataatgtg----------- consensus: ** * * *** * * * ** ** ** * * * * ** * * *** * *** * * ** **** * 2640~2760: Scer.....: actgaactattgtctcccttgccagaacaacatttctgtcttctgcaaaaggcacacccatgcaaaaacatatacgaaatgaacataaatatacggtgtgcgtattcacattgttagcat Smik.....: ---aaaaaagtg-------tacataaggaccgcttcattgatgtacaaa---tttaccaacacgaaggtatg---gaaatgaagaacaagat---gcatgtaacagcgtagtattaat-t consensus: ** * ** * * * * * *** * * * **** *** * * ** ** ******** * ** ** * ** * * * *** * Smik_spli: DDDDDDDDD 2760~2880: Scer.....: agcaacaaacggtgtattaattgcaacgatattaatcttataaaaaatttttaaagtgtcgaatattaatgattattagttccaacaataataaagtcaaaaagctagttaccttccttc Smik.....: aggacatgatgatat-tgatttttagaaagacaaaaagcacaaataaaaatctatatatggaatgataagtggtatgcaa---------------------------------------- consensus: ** * * * * * * * ** * * * ** * *** ** * * * * **** *** *** Smik_spli: DDDDDD 2880~3000: Scer.....: caatatttaattttgatcaaccttatggtattccttatttctttaataccactcattctgttgtatctcaaaatgagatacgtcagtatgacaatacgtcatcctaaacgttcataaaac Scer_spli: DDDDDDDDDD 3000~3120: Scer.....: acatatgaaacaaccttataacaaaacgaacaacatgagacaaaacccgtccttccctagctgaactacccaaaagtataaatgcctgaacaattagtttagatccgagattccgcgctt 3120~3240: Scer.....: ccaccacttagtatgattcatattttatataatatataagataagtaacattccgtgaattaatctgataaaccgttttgacaactggttacttccctaagactgttcagattaggattg Scer_spli: DDDDDD 3240~3360: Scer.....: tcaagacactccggtattactcgagcccgtaatacaacacattcaacaaatatcagggcgtgtggcgtagtcggtagcgcgctcccttagcatgggagaggtctccggttcgattccgga 3360~3480: Scer.....: ctcgtccaatcttttttgttattaccataacagtactataaaggtctgttaatgtataagctgtcaacatggtaaggtacatttaatagcggaaacattatttgaaaatgatgatatttg 3480~3547: Scer.....: atttttagaaagataaaaagcacaaaataaaaactctatacatgaaaattataggtgggaaatgcaa { alias......: ['VMA10', 'YHR039C-B'] chromosome.: 8 description: vacuolar ATPase V1 domain subunit G (13 kDa) end........: 187670 exons......: [(1, 3), (166, 507)] gene.......: VMA10 introns....: [(4, 165)] length.....: 507 name.......: YHR039C-A plength....: 169 start......: 187164 tdist......: 187164 type.......: ORF up.........: 0 } Scer: 1 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 247)] ] [ ->[('Scer', 25)] ->[('Scer', 298)] ->[('Scer', 987)] ] 0~120: Scer.....: acttgcaaattgccacacccttccctattaactggactcctattccagctcatctcatcgaatatgaactttgacatccactattattaccgcgaatttttttttttttcaatttgttac consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 120~240: Scer.....: cctgccttgggtatcaaaaatttcatctctaaaagggagcgtgatagataaagcaatcacaccttaaacaatacatttttttttttcctgcaatctccaaagtgtgcaaggtatacaaag consensus: ************************************************************************************************************************ 240~360: Scer.....: cagaATGGTATGTGCCATTACATTACGTGTCAACACTTCTGTCTCTAACAAGCGTTCTTACTAACATGAAAAACTTTTTTAAAACTGTGCTCTCTTGTTGGACTGGTACCTCGTGACAAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >================================================================================================================ 360~480: Scer.....: GGTATTGGTTTTTTCATTGTTGCTCAGAACTATGTAATATTCTCTTTAGTCCCAAAAAAACGGAATTGCCACCCTACTACAAGCTGAAAAGGAAGCCCACGAAATAGTATCAAAGGCTAG consensus: ************************************************************************************************************************ known....: ===============================================>= 480~600: Scer.....: AAAGTACAGACAAGATAAGTTGAAGCAAGCCAAGACTGATGCAGCCAAGGAAATCGACTCATACAAAATTCAAAAAGACAAGGAATTGAAGGAGTTTGAACAAAAGAATGCCGGTGGTGT consensus: ************************************************************************************************************************ 600~720: Scer.....: TGGTGAATTGGAAAAGAAAGCAGAGGCTGGTGTGCAAGGTGAATTAGCTGAGATTAAGAAAATTGCAGAGAAGAAAAAGGATGACGTTGTCAAAATTTTGATCGAGACTGTCATCAAGCC consensus: ************************************************************************************************************************ 720~840: Scer.....: TTCTGCTGAAGTCCATATCAATGCCTTGTAAtattgcattacattctagttttctaatcatatatctttttataatataataccaatagaataaaaatgtataaactgacattgcattcg consensus: ************************************************************************************************************************ 840~960: Scer.....: gtctttacgactctcgctttatccattcagccttttttttttttttttttttttctctatctgctaaacgagtagtagtataatcaaaaatgtgttatttagtatatcggttgtaaagga consensus: ************************************************************************************************************************ 960~1080: Scer.....: gaaagtatggtctctctatttttattttattaacgaaaaatactaaacgccgatggggattactatataattataatagtatttgcagaatagtagaattcttttcacagttcacgttca consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1080~1114: Scer.....: gtttctcctctgttttatcgaacgtttattcatc consensus: ********************************** { alias......: ['SRB2', 'HRS2'] chromosome.: 8 description: RNA polymerase II holoenzyme/mediator subunit end........: 189855 exons......: [(1, 14), (116, 734)] gene.......: SRB2 introns....: [(15, 115)] length.....: 734 name.......: YHR041C plength....: 244 start......: 189122 tdist......: 189122 type.......: ORF up.........: 0 } Scer: 8 donors and 2 branches Spar: 6 donors and 2 branches Smik: 5 donors and 1 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1483), ('Scer', 1487), ('Spar', 1483), ('Smik', 1483), ('Sbay', 1483)] ->[('Scer', 767), ('Spar', 767), ('Smik', 767), ('Sbay', 767)] ->[('Scer', 301), ('Spar', 301)] ->[('Spar', 623), ('Smik', 623)] ->[('Sbay', 35)] ->[('Sbay', 361)] ->[('Sbay', 574)] ->[('Scer', 314)] ->[('Scer', 651)] ->[('Scer', 717)] ->[('Scer', 1504)] ->[('Smik', 1566)] ->[('Smik', 1605)] ->[('Spar', 337)] ->[('Spar', 469)] ] [ ->[('Scer', 830), ('Spar', 830), ('Smik', 830), ('Sbay', 830)] ->[('Scer', 906), ('Spar', 906)] ] 0~120: Scer.....: gatatgtgcgacagtagatcac-ttgaaaaccgcggtcgttgtctagcgtagcggt--------------gaccactacag--gaacgcaaact-taagctacattgttcaccatattat Spar.....: gatatttgcagcagtagatcac-ttgaaaagtgcggtcgttgtctagcgtagcggt--------------gatcactaccg--aagcacaaagt-aacgctacactcttcaccatattat Smik.....: gatacgtgcagtagtagatcac-ttgaaaagagctgtccttgtctagcgtacctgt--------------gatccctcctg--aacctcaaagtctgcgctgcacttttcatcatgttat Sbay.....: gatttatccagcagtagatcactttgatgcgcggtgtcagtgtgtagcgtagcaatctcaaaccagccagcaccacctccaccagccgcaaagtgtacactgcacggtaaaccatattac consensus: *** * * ********** **** * *** *** ******* * * * * * * * **** * ** ** * * *** *** Sbay_spli: DDDDDD 120~240: Scer.....: actata--------------tatataacctcgcgctgagctttacaggtgcgtttgtcctcgaagaacgaaaagcagcccgaaaaaaaaatgcaaaacgat-aaaagctggctggagaac Spar.....: actata--------------tatataacctcgcgctgagctttgcaggtgcgtttgtcctcgaagaacgaaaagcagcccg-aaaaaaaatgcaaaacgat-aaaaactggctggagaac Smik.....: aatatatatatatatatatttatataacctcgcgctgagctttacaggtgcgtttgtcctcgaagaacg-aaagcagcccg-aaaaaaaatgcaaaacgat-aaaaactggctggagaac Sbay.....: actatt-acatacatatatatatataacctcgcgctgagctttgcaggtgcgtttgttctcgaagaacg-aagccagccc--gaaaaaaaagcaaaacgataaaaaaccgactggagaac consensus: * *** *********************** ************* *********** ** ****** ******* ********** **** * * ********* 240~360: Scer.....: aatagcgggttgaccgctaaacgagcacacacgtgatgtgtcgtgaactgtgatcgtggtagtat--gatgctag-------tatgtagtgatggct---gcatggtaccag--cggtga Spar.....: aatagcgggttgaccgctaaacgagcacacacgtgatgcttcgtgaactatgatcgtggcagtat--gatgctac-------tatgtagtgatggct---gcatgttaccag--cggtga Smik.....: aatagcgggttgaccgctaaacgagcacacacgtgatgcgccgtggattgtgatcgtagcactat--accactgc-------taagtagtagtggct---gcacggtgccga--cgaaga Sbay.....: aatag-gagatggccgctaaacgagcacgcacgtgacgcgccgtgggacgtgacgccagcgctattcactgtagcgcagaggtttgcagtcactactttggggttgtaccaggctgtggt consensus: ***** * * ** *************** ******* * **** *** * *** * * *** ** * * ** * * Scer_spli: DDDDDDDD DDDDDDDDDDDDD Spar_spli: DDDDDDDD DDDDDDDDD 360~480: Scer.....: cgttcggtagactctac--tctcctttgtt--------cccccggtgtgccatc-tttt----gagtt-ttgcgtgcgttatc--tactg-ggagcaagggtctggctcgtacgcataga Spar.....: cgttcggtagagtctac--tctcccttgtc-------atcccagatgtgccatcttttt----gagtt-ttgcatgcgttatctgtactg-ggagcaagggtttggctcgtacgtataga Smik.....: tgctcgacgctctctat--cctctcctgcc--------cttaggctgtgtgatcttt-------actt-ttgcgtgcgttatc--tactg-ggagaaagggtctgactcgtacgcataga Sbay.....: cgttcgttcagttgtgcggtctctgttgtctggagaaggaggtagtgctctgtccttttgtggaagttgttgtgtgcgtggcc--tgctgagaaacaagggtctggctcgtacgcgcagg consensus: * *** * * *** ** ** ** ** * ** *** ***** * * *** * * ****** ** ******** ** Spar_spli: DDDDDD Sbay_spli: DDDDDD 480~600: Scer.....: ggctgaggacgaacagtgtgcgtt-tgcaggcgtggatatagaatacatagctatatagatgggtagtgcgcatgggaaagtgcaattgagcgaaggaaggggcaggtggactgtagatg Spar.....: ggctgaggacgagcaatctgcgtt-tgcaggcgtagatatgg-atacataggtacatagataggtagtgcgcatgagcaagtgcgatttagcgaaggaaggggcgagtggattggccctg Smik.....: ggcggaggttagtgaagctgcgttaggtaggcgtagatatag-atacacagatatgtaggtaggcaatagacatgagcaagtgtaatttagcgaagcaagggg-gagtgaattgcccctg Sbay.....: ggctggggt--gaccagcaacatc-tgcaggcgtccatga---atacatagataggtacatagat-----gtgttggcagg-----ttttacgtgtgagttgg-ccgcgagggggcgctg consensus: *** * ** * * * ****** ** ***** ** ** ** * * * * * * ** ** * ** * * * ** Sbay_spli: DDDDDD 600~720: Scer.....: tcgccgcgtgattttatcgttgtttctcttcttgtgttttcttatgcgttagtatgc-cag----tttcgcggtgtgattcccaaagtgaaattttactg---gaagagcaaatcttgta Spar.....: tccccgcgtgattttatcgttgtgtatgttcttgtgttttcttatgcttttgtatgg-cag-----tacgcggtgtgatgcctaaagtgaaattttactg---aaagagcaaatcttgta Smik.....: ttcttgcgtgatttt---gttatgcatgttgttgtggattcgtgtgcttttatgttc-cag-----tacgcggtgtgatgtttaaagtgaaattttactggaagaagagcaaatctcgtg Sbay.....: cccctgcgtggtgtcgtcgtggcggttgttcttgtgcttttacgtgcttgtctatgtatagtatagtacgcggtgtggtgtttaaagtgaaattttgcag---acagaagcaatctc--a consensus: ***** * * ** * ** ***** ** *** * * * ** * ********* * ************* * * *** ***** Scer_spli: DDDDDD DDD Spar_spli: DDDDDD Smik_spli: DDDDDD 720~840: total....: ====== ======= Scer.....: agtcggcgctcgaaagcacagtagcaatccatcATGGGAAAATCAGCGTATGTAAAGCTGGAGCGTCCTTCGTGGCGCA---TCGGAATTTCTTCAATTGAACTACCTGTTGCTAACAAC Spar.....: tctcgccgctcaaaagcacagtagcaatccatcatgggaaaatcagcgtatgtaaaggtgggacctccttcttcagccaggccctaaatctcttcaattgaatcatccgttgctaaca-- Smik.....: cttcgccgctcaaaa-cacagcagcaatccatcatggcaaaatcagcgtatgtagtgccggaatagccttctttattca--ccggacatcccttcaatgtaatcatttgttgctaacaa- Sbay.....: cctcgccgcccac---cgcagcagcaactcaccatggcaaaatcagcgtatgtagagccccggagcagcccatcctccg--ccgcccatctcgtcaattggaccactccttgctaacatc consensus: *** *** * * *** ***** ** ***** **************** * * * * ** * ***** * * ********* Scer_spli: DDD DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >======================================================================== 840~960: Scer.....: AGTTTTTTTTTTCTCTCTTT---TATGTATATAGCGTTATATTCGTGGAAAGAGCCACTCCCGCTACACTAACGGAACTGAAGGATGCTCTCTCGAATAGTATCCTGTCCGTGCGAGACC Spar.....: ---tatcggttttttttttt---tatgtatatagcgttatatttgtggaaaaagccactcccgctacactaacggaactaaaggatgctctgtcgaacagtatcctgtccgtgcgagacc Smik.....: ---gacttcttttttttttt---tg-----atagcgttatatttgtggaaagagccactcccgctacactgacggaactgaaggatgctctctcgaacagcatcctgtccgtgcgagacc Sbay.....: tacttttttcccctctctttttatatgcttgcagcgttatatttgttgaaagagctactcccgccacactgacggaactgaaggatgctctctcgaacagcattctgtccgtgcaggagc consensus: * * *** * *********** ** **** *** ******** ***** ******** *********** ***** ** ** ********** ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB known....: ================================>= 960~1080: Scer.....: CTTGGTCGATAGACTTTCGGACGTACCGGTGCTCTATCAAGAACCTACCCGCGGATGTCTCCAAGCTCATGTACTCGATAACGTTCCACCACCATGGCCGGCAGACCGTGCTAATCAAGG Spar.....: cttggtctatagacttccggacgtaccggtgctctatcaagaatctgcccgccgacgtttccaagctcATGTGCTCGATAACGTTTCACCATCATGGCCGGCAGACCGTGGTGATCAAGG Smik.....: cttggtcaatcgacttccggacgtacaggtgctctatcaagaacctgccggccgacgtctctaagcttATGTACTCGATAACGTTCCATCACCATAGTCGACAGACTGTGCTGATCAAGG Sbay.....: cgtggtcgatcgacttccggacgtaccggtgctccatcaagaacctgcccgcccacatctccaagctgATGTACTCGATAACGTTCCACCACCACGCCCGGCAGACGGTGCTCATCAAGG consensus: * ***** ** ***** ********* ******* ******** ** ** ** * * ** ***** **** ************ ** ** ** ** ***** *** * ******* 1080~1200: Scer.....: ACAACTCAGCGATGGTGACGACTGCCGCAGCGGCGGATATCCCTCCGGCGCTGGTGTTCAATGGCTCATCTACGGGCGTTCCTGAGTCCATAGACACTATTTTGTCGTCCAAGCTGTCCA Spar.....: ACAACTCCGCCATGGTGACCACTGCAGCAGCAGCGGATATTCCTCCGGCGCTGGTGTTCAATGGCTCGTCTACGGGTGTTCCTGAGTCCATTGACACCATCTTGTCGTCCAAGCTGTCAA Smik.....: ACAAGTCCGCCATGGTGACGACCGCAACAGCTACGGACATTCCTCCCGCCCTCGTATTCAATGGGTCGTCCACGGGCGTTCCTGAGTCCATTGACACGATCTTGTCGTCTAAGCTGTCCA Sbay.....: ACAAGTCCGCCATGGTCACCACCGCTGCCGCCGCGGACATCCCTCCGGCGCTGGTGTTCAACGGCTCGTCCACGGGCGTTCCTGAGTCCATCGACTCGATCCTGTCCTCGAAGCTGTCCA consensus: **** ** ** ***** ** ** ** * ** **** ** ***** ** ** ** ***** ** ** ** ***** ************** *** * ** **** ** ******** * 1200~1320: Scer.....: ACATCTGGATGCAGAGGCAGCTCATCAAGGGTGATGCCGGTGAGACGTTGATCTTGGACGGGCTCACCGTGCGACTCGTCAACCTCTTCTCCTCCACTGGGTTCAAGGGTCTCCTGATAG Spar.....: ACATCTGGATGCAGAGGCAGCTTATCAAGGGCGATGCCGGCGAAACGTTGATCTTGGACGGGCTCACCGTGCGACTCGTTAACCTCTTCTCCTCCACCGGGTTCAAGGGTCTGCTGATAG Smik.....: ACATTTGGATGCAGAGGCAGCTCATCAAGGGCGATGCGGGCGAGACATTGATCTTGGATGGGCTCACAGTGCGACTTGTCAACCTGTTCTCCTCCACTGGATTCAAGGGGCTGTTGATAG Sbay.....: ACATCTGGCTGCAGCGCCAGCTCATCAAGGGCGACGCGGGCGAGACGTTGCTCATGGACGGGCTCACCGTTCGCCTGGTCAACCTCTTCTCCTCCACGGGGTTCAAGGGCCTGCTCATAG consensus: **** *** ***** * ***** ******** ** ** ** ** ** *** ** **** ******** ** ** ** ** ***** *********** ** ******** ** * **** 1320~1440: Scer.....: AACTGCAGGCGGACGAAGCGGGCGAG---------TTTGAGACCAAGATTGCAGGCATCGAAGGACACCTAGCTGAAATCCGGGCCAAGGAGTACAAAACCTCATCCGACT------CGT Spar.....: AACTGCAGGCAGACAAAGCGGGCAAG---------TTTGAGGCCAAGATCGCAGGCATTGAAGCGCATCTAGTTGAAATCCGGGCCAAAGATTACAAAACTTCATCCGACT------CAT Smik.....: AGTTACAAGCGGGTGAAGAGGGCGAG---------TTTAAAGCCAAGGTCGCTGGTATTGAAGCGTGTCTAACGGGAATCCACGCCAAGGACTACAAAACTTCATCTGACT------CGC Sbay.....: AGCTGCAGGCAGGCGCACCACACGAGGCCGCCGTCTTCGAGGCCAAGATCGCAGACATCGAGGCCCATCTCTCCGAGATCCACGTCAAGGACTTCAAGACCTCTTCGGACTCTTTGACGC consensus: * * ** ** * * * ** ** * ***** * ** * ** ** * ** * **** * *** ** * *** ** ** ** **** * 1440~1560: Scer.....: TGGGGCCGGACACCAGCAACGAAATATGTGATTTGGCGTACCAGTATGTTCGTGCTCTGGAGCTGTGAgttcttacgaatgctttttctttttttttttttctgtttgtatattgcggtg Spar.....: TGGGGCCGGACTCACACAATGAAATCTGTGATTTGGCATACCAGTACGTTCGCGCCCTAGAACTGTAA-ttccgatgaatattttctttttat-----------tctgtatattgtgatc Smik.....: TGTCCCCGGAAGCGCAAAACGAAATCTGTGATTTGGCATACCAGTACGTTTGTGCTCTGGAATCCTGActtt-----gataatttttccgtctgaaattgttcttttgtgtattatcgtt Sbay.....: CGGGGTCGGAGTCGGACAACTACATATGTGATCTGGCATACCAGTACGTCCGTGCCCTGGAATTCTGAgttttgtatactatcttttttatatacgtaggaaaaaata---accgtggtc consensus: * **** * ** * ** ****** **** ******** ** * ** ** ** * * ** * ** * * * * * * Scer_spli: DDDDDDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1560~1615: Scer.....: ta-tacgtatagatagatagtctaaatagtaatcttcaaccttatgtatctcggc Spar.....: ta-tacgt----atggataatttaaatagtaatctttaatcttacgtatcttggt Smik.....: tattatgt----atgtatattttgaacaataaactt-aagtatatgtacgttggc Sbay.....: tc-tacttct--atgtacttgttta------------------------------ consensus: * ** * ** * * * Smik_spli: DDDDDDDDDD DDDDDD { alias......: ['NMD2', 'IFS1', 'SUA1', 'UPF2'] chromosome.: 8 description: Highly acidic C-terminus end........: 255757 exons......: [(1, 6), (120, 3383)] gene.......: NMD2 introns....: [(7, 119)] length.....: 3383 name.......: YHR077C plength....: 1127 start......: 252375 tdist......: 252375 type.......: ORF up.........: 0 } Scer: 4 donors and 4 branches Spar: 3 donors and 2 branches Smik: 8 donors and 4 branches Sbay: 5 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 653), ('Spar', 653), ('Smik', 653), ('Sbay', 653)] ->[('Scer', 3639), ('Smik', 3639), ('Smik', 3648), ('Sbay', 3639)] ->[('Spar', 2551), ('Smik', 2560), ('Sbay', 2560)] ->[('Sbay', 757)] ->[('Sbay', 2632)] ->[('Scer', 227)] ->[('Scer', 1593)] ->[('Smik', 246)] ->[('Smik', 1051)] ->[('Smik', 1605)] ->[('Smik', 2449)] ->[('Spar', 3957)] ] [ ->[('Scer', 714), ('Spar', 714), ('Smik', 714), ('Sbay', 714)] ->[('Scer', 2654), ('Spar', 2654), ('Smik', 2654)] ->[('Sbay', 621)] ->[('Sbay', 2276)] ->[('Scer', 2103)] ->[('Scer', 2751)] ->[('Smik', 760)] ->[('Smik', 2064)] ] 0~120: Scer.....: cccgtccaccacttagtctacactcaatagtcctttctagtgcaggtcctg--gaggcaaccgccagagttgagatcttttccttttctttccctgctggtcaatttttattgt------ Spar.....: cccatatgccagttagtctatgctcaataatcctttctagtggaggtcctg-taaaacaactg-cagagtcaaggtcttttaccttcctttctctgctggtcaatttttattgt------ Smik.....: cccattcaccaattagtctattttcggtgattctttctagtacagacgccg-aaacgcaattcttaga-tgaacctctttcccctttctttctctactggacggttttcattgt------ Sbay.....: cccgttggccaatta-tctgtctacaccgtccctttctagcgcagctctggttaacacaactattgaagt-aaagtcttttcccttacttcgtctcctggtcgattttcattgttatacg consensus: *** * *** *** *** * ******** ** * * *** * * * ***** * ** *** ** **** * **** ***** 120~240: Scer.....: -tcag-gactcggtcatcgcagatatcgcaatttttcactcgtttgagtctagactgtaaa----ataaaac-----cgaatggttaagctaaaata----gactctgtatgactaagtc Spar.....: -tcag-gattcggtcatcgtagatatcgctatttttcactcgtttgagtctaaaccgtaaa----ataaaag-----ccaaccattaggctgaattg----gatttggtgaggcgaaatt Smik.....: -tcaa-gactcggtcatcgcaaatatcgctatttttttcctatatgaatctaaatcacaaattgcgtaaaacgaaagccaatgaccaagttgaaata----ggttttgtacgatgaaatc Sbay.....: ctcggttgttcggtcatcgcaaatatcgctgttttcca--cataggcctctaagttgtact----agacaac----gccaaccattgagccaagatgcagctactaaacgaagcgcaaac consensus: ** ********** * ******* **** * * **** * * ** * ** * * * * * Scer_spli: DDDDDD 240~360: Scer.....: gttcactaaagttcattatttcatgcctgaatgacctttatcttaattatgcaccatcatatagcgtttct----------atgatcactacgggatattatgatattgttagggggtta Spar.....: attaaggcaagttcattccttcatgaaaagatgaccatcat-ttgatgcttcacctttttatagccctcttgttaacactcatgatcattatagggtattatggtatattcaggtttttc Smik.....: attcgtgcatgttcattcttctttgagagaacggtcatcac-ttaatggt-ccccttcctaaacctttcttgtgaagatacgtgatcatgacagggt-tggtaacaatgttgaggttttc Sbay.....: attcagatatgctca-tgcctcgtaaaagatgcccctctctcataatgcc-tgctaatataaacctctctgatgttcttccgcgattgttttagggc-ttgttatattatataggtcttt consensus: ** * * *** * * * * ** * ** * * * *** ** * * * * * ** Smik_spli: DDDDDD 360~480: Scer.....: tattgaatatttcttagggcat-gaggatgatattagggttat-taataggtttacaattatataatttatgtgataat-------tatcacttgatacgaattgatggagcctgcttct Spar.....: ccttg-atattagttaggtcttagatggtaatattagggggtt-taaaagggatacagttgtataagttaggttattct--atttatatcactgcttacgaattaatagggttgg----- Smik.....: cttcattatattgttagggcatcatggttaacgtttttaattt-taatagg-ttactactatactacttaggttatctctataataggtggcttactaggaattcatagggttgg----- Sbay.....: ctctacgt-ttatatagggttt-gtgttttatgttcccattttagggtagggtaactgttttaaatgttaggtcttaat-aatatttatcacttggtacgaatgtatagggcttg----- consensus: * **** * * * ** * *** ** * ** *** ** * * ** ** **** ** * * * 480~600: Scer.....: ttttttttttttcactttcttggcagtcactgaaaaactgcattcgaatacaggtttgagaa-acta-atgaggcccatattactttacaatgaacagtaacaatcaacttaaatgctta Spar.....: -attttttttttcatttttctggtattcactgaaaaattatactggattacaggcttgagat-acta-ttgagaccaattttactttaccatggacagtagtgatcagtttaaatgctta Smik.....: -gtaatttttat...............................................................tatttctgctttac-attaacaatag-aattaatttaaatgctcg Sbay.....: --gagtcttttcaagttttttggca-tcagtgaaaaattatactcaattatggattagacatggctatttaaagctaattctactttgatatgagcggtagagatctatttagatgttta consensus: * *** * *** *** * *** ******* * * * * ** * * ** * *** * * * * * **** ** * ** ** *** *** * 600~720: total....: ====== ====== Scer.....: aataatctaatattgtatctgcattgataatacattggacagaaattATGGACGTATGTTTGATTTATCTTACTGTGGCCAGATCGGCCTTTCAGT---ACTTCTAAGGTTTTATACTAA Spar.....: aataagctaatattggatctgcactggtaatacattggacagaaattatggacgtatgtttggtctatattagtgaggccagatcggcctttcagt---actcctaagg-tttatactaa Smik.....: aataagccgattttggatctgcactgagaatagattagacagaaattatgaacgtatgtttgatttttatggatattgccgggtcgcccttctaat---cttcctaggattgtgtactaa Sbay.....: cataagcacataggggagctgtactaataacaaatcggatagaaactatggacgtatgtttgagttttgacattattgccagatcggcttttttttttgtctcttagggctttgtactaa consensus: **** * ** * * *** * * ** * ** ** ***** **** *********** * * * *** * *** * ** * * ** * * * ****** Scer_spli: DDDDDD BBBBBB Spar_spli: DDDDDD BBBBBB Smik_spli: DDDDDD BBBBBB Sbay_spli: BBBBBBB DDDDDD BBBBBB known....: >================================================================== 720~840: total....: = Scer.....: CTTCTTTTATTGATCGTTGTAAACTACGGTAACAATTATGTATCAACAGGATGGACGGAAAAAAGAATTGCATGATTTGAACACCCGAGCTTGGAATGGCGAAGAAGTCTTTCCCCTGAA Spar.....: ctt-ttttattgattgt--------------gagatcacatatt-acaggatggaaggaaaagagaattgcacgacttaaatacccgagcttggaatggcgaggaagtctttcccttgaa Smik.....: cttttaaaattgattttg--gaattacgataccaatcatatattaacaggatgaaaggaaaagggaactgcatgacttcaatgttcgagcttggaatggtgaggaagtcttccccttgaa Sbay.....: ctt-ctttattggttctg--agattacgatgccaattgcatgtcattaggatgaaaggaaaagggaattacacgacttgaatacgcgagcttggaatggcgaggaagtcttcccgttgaa consensus: *** **** * * ** * * ****** * ****** *** * ** ** ** ** ************** ** ******** ** **** Scer_spli: B Spar_spli: B Smik_spli: B BBBBBBB Sbay_spli: B DDDDDD known....: ===============================================>= 840~960: Scer.....: AAGTAAAAAACTGGATTCCAGTATAAAGAGAAACACTGGCTTTATAAAAAAACTAAAGAAGGGTTTTGTGAAAGGTTCAGAATCTTCATTATTGAAAGATTTAAGTGAGGCGTCCTTGGA Spar.....: aagcaaaaagctagattctagtataaagagaaacactggttttataaaaaaattaaagaagggatttgtgaaaggttcagaaccctcgttgctgaaagatttgagtgaggcctccttgga Smik.....: aagtaaaaagctagattcaagtataaagagaaacaccggttttataaaaaaattaaagaaggggtttgtaaaaggttcagaggcctcattgttgaaagatttgagtgaagcctccttgga Sbay.....: aaataagaaactagattcaagcataaagagaaacacaggttttatcaaaaaattaaagaagggatttgtgaagggttcggaagtctcattgctgaaggacttgagtgaggcttccttgga consensus: ** ** ** ** ***** ** ************** ** ***** ****** ********** ***** ** ***** ** ** ** **** ** ** ***** ** ******** 960~1080: Scer.....: AAAGTACCTATCAGAGATAATAGTGACGGTAACAGAATGTCTGCTAAATGTTTTGAATAAAAATGATGACGTAATTGCCGCTGTTGAGATCATAAGTGGACTTCATCAAAGGTTCAATGG Spar.....: aaagtacctatcagagataatagtaacagtaactgagtgtttgttaaacgttccgaataagaacgatgatgtaattgccgctgttgagatcataagtggacttcatcaaaggttcactgg Smik.....: gaagtatctctccgagattatagtcaccgtaactgaatgtctgttgaatgttcccaataagaatgatgatgtggttgccgctattgagatcgtaagtggacttcatcagaggttcaatag Sbay.....: gaagtatctttccgaaataatagtaaccgtaaccgagtgtcttttaaacgtgccaaacaaaaacgacgacgttattgccgctgttgagattataagtggacttcatcaaagattcaatag consensus: ***** ** ** ** ** ***** ** ***** ** *** * * ** ** ** ** ** ** ** ** ******** ******* **************** ** **** * * Smik_spli: DDDDDD 1080~1200: Scer.....: CCGATTTACTAGTCCGCTTTTAGGAGCTTTTTTACAAGCTTTTGAGAACCCCTCTGTTGACATTGAATCCGAAAGAGATGAGCTTCAAAGGATAACCAGAGTTAAAGGTAATCTTCGGGT Spar.....: ccggttcactggtcctcttttgggagcttttctgcagacttttgagaatccctctgtcgacatagaatccgaaagagatgagcttcaaaggataaccagaattaaaggaaatcttcgcgt Smik.....: ccggttcactggccctcttttgggctcttttttgcaaacttttgaaaatccttcagttgacattgaatctgaaagagatgagcttcaaaggataaatagaatcaaaggaaatcttcgcgt Sbay.....: ccggttcactggtcctcttttgggcgcatttctacagacttttgaaaatccttctgttgatgttgattctgaaagagatgagctgcagaggataaacaagatcaaaggcaatcttcgtgt consensus: *** ** *** * ** ***** ** * *** * ** ******* ** ** ** ** ** * ** ** ************** ** ******* * * ***** ******** ** 1200~1320: Scer.....: ATTTACCGAGCTTTATTTAGTTGGAGTTTTTAGAACATTGGATGATATTGAGTCGAAAGATGCTATTCCAAACTTCCTACAGAAGAAAACTGGGCGAAAGGATCCGTTGTTATTCAGTAT Spar.....: atttactgagctttacttagttggggttttcagaacattggatgatattgagtcgaaggacgttgttccaaatttcctacagaaaaagactggccgaaaagatccattgctattcagtat Smik.....: atttactgagctttatttggtcggcgtattcaggacattggatgatattgagtcgaaggacgccattccgaatttcctacagaagaaaattggcaaaaaagatcctttactgttcagtat Sbay.....: tttcactgagctttatttagttggtattttcagatcactgggtgacgttgaatcgaaggacgctatacctaatttcctgcagaagaaaatcagcaaaaaagaacccctactattcagtat consensus: ** ** ******** ** ** ** * ** ** ** *** *** **** ***** ** * * ** ** ***** ***** ** * * *** ** ** * * ******** 1320~1440: Scer.....: TCTCAGAGAGATTCTTAATTATAAGTTCAAATTGGGCTTTACTACCACTATTGCGACCGCATTTATTAAGAAATTTGCACCTTTGTTTCGCGACGATGATAATTCTTGGGATGATTTAAT Spar.....: cctcagagagattcttaattataaattcaaattgggttttactaccactattgcaactgcatttattaaaaaatttgcgccttttttccatgatgacgataattcttgggatgatttaat Smik.....: tctaagagagatacttaattataagttcaagttgggatttactactactatagcaactgcttttatcaaaaagttcgccccttttttccatgaggatgacgattcttgggatggcttaat Sbay.....: cctaaaggaaatactcaactacaagtttaagttgggtttcacgaccaccatcgctactgcttttatcaagaaattcacaccctttttccatgacgatgatgactcttgggatgacttgat consensus: ** * ** ** ** ** ** ** ** ** ***** ** ** ** ** ** ** ** ** ***** ** ** ** * ** ** ** * ** ** ** * ********** ** ** 1440~1560: Scer.....: ATATGACTCGAAGTTAAAAGGTGCGTTACAGTCTCTGTTTAAGAATTTTATAGACGCCACTTTTGCGAGGGCCACAGAACTGCATAAGAAGGTCAATAAACTGCAAAGAGAACATCAGAA Spar.....: atttgattcgaacctaaaatctacgttacagtctttgtttaagatttttatagaggctaccttttccagggccgcagaactgcataaaaaggtcaatagactacaaagagagcatcagaa Smik.....: atcagacacaaatttgaaatttaccttacagtctttgttcaagagttttatagacgctaccttttctagggccacagaactgcataaaaaggttagtaaacttcaaagagaacatcagaa Sbay.....: atctgacgcgaatttgaaatgtactctacagtctttgttcaagatttttgtagatgccacgttttctagagccgcagaactgcataaaaaggtgaataaactacagagagaacatcagaa consensus: ** ** * ** * *** * * ******** **** **** **** **** ** ** *** * ** *** ************* ***** * ** *** ** ***** ******** 1560~1680: Scer.....: ATGCCAAATAAGAACGGGAAAATTGAGAGATGAGTACGTAGAGGAGTACGACAAGTTACTTCCAATATTCATTAGGTTCAAGACATCTGCAATTACTTTGGGAGAATTTTTTAAGTTAGA Spar.....: atgtcaaataagaacagggaaattaagagatgagtacatagaggagtacgacaagttacttccgatatttattagattcaaaaattccgcaataacattgggggaattttttgagttaga Smik.....: atgtcaaataagaacagggaagctgagagatgagtacatagatgagtatgacaagctacttccagtatttgttaggttcaaaagttctgcgactactttgggagagttttttaaattaga Sbay.....: atgtcaaataagaacaggtaaattgcgagacgaatacatagaagagtacgacgagataatctcgatattcaataggtttaagggctccacgataactctgggagaattcttcaaactaga consensus: *** *********** ** ** * **** ** *** **** ***** *** ** ** * * **** *** ** ** ** * * ** **** ** ** ** * **** Scer_spli: DDDDDD Smik_spli: DDDDDD 1680~1800: Scer.....: AATTCCGGAGCTTGAAGGTGCCTCTAATGATGATCTGAAAGAAACAGCTTCTCCAATGATCACGAATCAGATATTGCCACCCAACCAACGATTATGGGAAAATGAAGATACAAGGAAATT Spar.....: aattcccgagcttgaaggtgcttctaatgacgatttgaaagaaactgcctctccaATGATCACGAACCAGATATTGCCACCCAATCAACGATTATGGGAAAATGAAGACACAAGGAAATT Smik.....: aactccaaaactcgaaggtgcttccaatgacgacataaaagaaatcgcttctccaATGATTACAAACCAGGTATTACCACCCAATCAAAGGTTATGGGAGAATGAAGACATGAGGAAGTT Sbay.....: aacgccagacctcgaaggcgcttctgatgaagacctggatgaagtagcttctcccATGATCACAAACCAGGTTTTACCACCCAACCAAAGATTGTGGGAAAACGAAGAAATAAGAAAATT consensus: ** ** * ** ***** ** ** **** ** * * *** ** ***** ***** ** ** *** * ** ******** *** * ** ***** ** ***** * ** ** ** 1800~1920: Scer.....: TTATGAAATCTTACCAGATATCTCAAAAACAGTAGAAGAATCACAATCTTCTAAAACAGAAAAAGATTCAAACGTTAACTCAAAAAATATCAATCTATTCTTTACGGATTTGGAAATGGC Spar.....: TTATGAGATTCTACCAGATATCTCTAAAACTGTAGAAGAATCACAATCCACCAAAACAGAAAAAGATTTAAATTTAAACTCTAAAAATATTAATTTATTCTTTACAGATTTGGAAATGGC Smik.....: TTATGAGATTTTACCCGATATCTCAAAAACTGTAGAAGAATCACAATCATCCAAATCAGAAAAGGATTCAAATGTGGCCTCGAAAAATATCAGTTCATTTTTCACAGATTTAGAAATGGC Sbay.....: TTATGAAATTTTACCAGATATTTCTAAAACTGTGGAAGAATCACTGGCCATTAAGTTAGAAAGAGACTCAAACTCAAACTCCAAGAATATTAATTTATTTTTCACAGATTTGGAAATGGC consensus: ****** ** **** ***** ** ***** ** ********** * ** ***** ** * *** *** ** ***** * * *** ** ** ***** ******** 1920~2040: Scer.....: AGATTGTAAAGATATAATCGATGACCTTTCAAATAGATATTGGTCATCATATTTGGACAACAAAGCCACAAGAAATCGAATATTGAAATTTTTCATGGAAACACAAGATTGGAGCAAACT Spar.....: TGACTCCAAAGATATAATTGACCAGCTCTCGAATAGATATTGGTTATCGCATTTGGACAACAAAGCCACAAGAAATCGAATATTGAAATTTTTCATGGAAACACAAGACTGGAGCAAACT Smik.....: AGACTCTAAAGATATAATTGATGATCTCTCAAACAAATACTGGTTATCGCATTTAGACAACAAAGCTACTAGAAACCGAATACTAAAATTTTTCATGGAGACACAAGATTGGAGCAAGTT Sbay.....: TGATTCTAAAGATATAATAGATGAGCTCTCAAATAAATACTGGTCGTCGCATTTGGACAATAAAGCCACAAGAAATCGAATATTGAAATTTTTCATGGAAACACAAGACTGGAGCAAGCT consensus: ** * *********** ** * ** ** ** * *** **** ** **** ***** ***** ** ***** ****** * ************** ******** ******** * 2040~2160: Scer.....: GCCAGTGTATTCCAGATTTATTGCAACAAATAGCAAATATATGCCGGAAATTGTTTCTGAGTTTATTAACTACCTAGACAATGGCTTCAGGAGTCAATTACATTCTAATAAGATTAACGT Spar.....: GTCGGTATATTCCAGATTTATTGCAACAAACAGTAAATATATGCCTGAAATTGTTTCTGAATTTATAAATTACCTAGATAATGGCTTTAGGAACCAGCTACACTCTAACAAGATTAACGT Smik.....: AGCGGTATATTCCAGATTCATTGCAACTAACTGCAAATATATGCCTGAAATCGTTTCGGAGTTCATCAACTACTTAGATAATGGATTTAGAAATCAATTGCATTCAAATAAGATTAATGT Sbay.....: GTCGGTATATTCTAGATTTATTGCAACAAACAGTAAATATATGCCCGAAATTGTTGCAGAATTTATTAATTACCTAGACAATGGTTTCAGAAACCAATTGCACTCAAATAAGATTAATGT consensus: * ** ***** ***** ******** ** * *********** ***** *** * ** ** ** ** *** **** ***** ** ** * ** * ** ** ** ******** ** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 2160~2280: Scer.....: TAAAAACATCATCTTCTTCAGTGAAATGATTAAATTTCAATTAATACCATCGTTTATGATTTTTCATAAGATTAGAACATTAATCATGTATATGCAAGTTCCAAATAACGTAGAAATTTT Spar.....: AAAAAACATTATCTTCTTCAGCGAAATGATCAAATTTCAACTGATACCGTCATTTATGATTTTCCATAAGATTAGGACATTAATCATGAATATGCAAGTTCCAAATAACGTAGAGATTTT Smik.....: AAAAAACGTCATCTTTTTCAGCGAAATGATCAAATTCCAATTGATACCAACATTCATGATCTTTCACAAGATTAGGACATTAATCATGAATATGCAAGTCCCAAACAACGTAGAAATTTT Sbay.....: AAAAAACATCATTTTCTTCAGTGAAATGATCAAGTTCCTATTGATACCGTCATTTATGATTTTCCATAAGATTAGAACGTTAATCATGAATATGCAAGTTCCAAATAATGTAGAAATATT consensus: ****** * ** ** ***** ******** ** ** * * * ***** * ** ***** ** ** ******** ** ********* ********** ***** ** ***** ** ** Sbay_spli: BBBB 2280~2400: Scer.....: GACGGTTTTGTTGGAGCACTCAGGGAAATTTCTGCTAAATAAGCCAGAATATAAGGAATTAATGGAAAAAATGGTCCAACTAATCAAGGATAAAAAAAATGATAGGCAATTGAACATGAA Spar.....: GACCGTTTTATTAGAACACTCAGGAAAATTCCTGCTAAATAAACCAGAATATAAGGAATTAATGGAAAAAATGGTCCAACTAATCAAGGACAAAAAAAATGATAGACAATTGAATATGAA Smik.....: GACTATTCTATTGGAGCACTCGGGAAAGTTCTTACTGAATAAACCGGAGTATAAGGAATTAATGGAAAAAATGGTCCAACTAATTAAAGAAAAAAAAAATGATAGACAATTGAACATGAA Sbay.....: AACCATTTTATTGGAACATTCAGGGAAATTTCTGCTAAATAAACCAGAATATAAGGAATTAATGGAGAAAATGGTTCAATTAATTAAAGACAAGAAAAATGACAGACAATTGAACATGAA consensus: ** ** * ** ** ** ** ** ** ** * ** ***** ** ** ***************** ******** *** **** ** ** ** ******** ** ******** ***** Sbay_spli: BBB 2400~2520: Scer.....: CATGAAAAGCGCCTTAGAAAACATAATTACTTTACTTTATCCCCCTTCTGTAAAATCATTAAATGTTACGGTAAAAACAATAACGCCTGAACAACAGTTTTATCGCATATTAATTAGAAG Spar.....: TATGAAAGGTGCCCTGGAAAACATAATCACTTTACTTTATCCCCCTTCTGTCAAGTCTTTGAACGTTTCAGTAAAAACGATAACACCCGAACAACAATTTTATCGCATTTTGATTAGAAG Smik.....: CTTGAAAGGTGCCCTGGAAAACATAATTACTTTACTTTATCCACCTACTGTTAAGTCTTTAAATGTTACGATAAAAAAAATAACACCGGAACAACAGTTCTACCGCATTTTAATTAGAAG Sbay.....: CATGAAAGGTGCCTTGGAAAACATAATCACCCTACTTTATCCACCTTCTGTCAAGTCTTTAAATGTGGCGGTAAGAACATTAACACCAGAACAACAGTTTTACCGCATCTTAATCAGAAG consensus: ***** * *** * *********** ** ********** *** **** ** ** ** ** ** * *** ** **** ** ******** ** ** ***** ** ** ***** Smik_spli: DDDDDD 2520~2640: Scer.....: TGAACTAAGTAGCCTAGACTTCAAACACATTGTCAAGTTGGTTCGGAAAGCTCACTGGGACGATGTAGCTATTCAGAAAGTGCTGTTTTCTCTGTTTTCAAAACCACATAAGATTAGCTA Spar.....: TGAACTGAATAACTTAGACTTCAAACACGTTGTTAAGTTGATTCGTAAGGCTCACTGGGGCGATTTAGCTATCCAGAAAGCGCTGTTTTCTCTTTTTTCAAAACCGCATAAGATTAGTTA Smik.....: TGAACTCAGCAACCTAGACTTCAAACACGTTGTCAAGTTAGTTCGTAAAGCACACTGGGGTGATTCAGCTATTCAGAAAACACTTTTCTCTCTCTTTTCAAAACCGCATAAGATAAGTTA Sbay.....: TGAACTTAATAACCTGGATTTCAAACACATTGTTAAGCTAGTTCGTAAAGCCCACTGGACAGATCCGGCTATCCAGAAAACACTATTTTCTCTGTTTTCAAAGCCACATAAGGTGAGTTA consensus: ****** * * * * ** ********* **** *** * **** ** ** ****** *** ***** ****** ** ** ***** ******** ** ****** * ** ** Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 2640~2760: Scer.....: TCAAAATATTCCCTTATTAACAAAAGTTCTAGGCGGTCTATACAGTTACCGCCGCGATTTCGTCATCAGATGTATAGACCAAGTACTGGAAAACATTGAGCGAGGCTTAGAAATTAACGA Spar.....: TCAAAACATTCCCCTACTAACTAAAGTTCTGGGCGGCCTATACAGCTACCGCCGCGACTTCGTTATCAGATGTATAGACCAGGTACTAGAAAATATTGAACGGGGCTTGGAAATCAATGA Smik.....: TCAAAACATTCCCCTATTAACTAAAGTTTTAGGTGGTTTATACAGTTATCACCGCGACTTTGTCATAAGATGTATAGACCAGATACTGGAAAATATTGAACGCGGCCTAGAAATTAATGA Sbay.....: TCAAAACATCCCCCTTTTAACCAAAGTTTTAGGTGGTTTATACAGTTACCATCGTGACTTTGTCATCAGATGTATAGACCAAATATTGGAGAATATTGAGCGGGGTTTAGAAGTCAACGA consensus: ****** ** *** * **** ****** * ** ** ******* ** * ** ** ** ** ** ************** ** * ** ** ***** ** ** * *** * ** ** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 2760~2880: Scer.....: TTATGGACAAAACATGCATAGAATATCAAATGTCAGATACTTAACTGAAATATTCAACTTTGAAATGATAAAATCCGATGTTTTGTTAGATACTATCTACCACATTATTCGGTTTGGTCA Spar.....: TTATGGACAAAACATGCATAGAATATCGAATGTTAGATACTTAACTGAAATATTTAACTATGAAATGATAAAGTCCGATGTTTTGTTAGATACCATTTACCACATTGTTAGATTCGGTCA Smik.....: CTATGGACAAAACATGCATAGAATTTCGAATGTGAGGTATTTAACTGAAATATTCAACTATGAAATGATAAAATCGGATGTTTTGTTAGATACTATTTATCACATTATTAGATTCGGTCA Sbay.....: TTATGGACAAAATATGCATAGAGTCTCGAACGTAAGATATTTGACCGAAATTTTCAATTATGAAATGATAAAGTCCGACGTTTTGTTAGATACAATCTATCACATTATCAGGTTTGGTCA consensus: *********** ********* * ** ** ** ** ** ** ** ***** ** ** * ************ ** ** ************** ** ** ****** * * ** ***** 2880~3000: Scer.....: TATCAACAATCAACCCAATCCATTTTATTTAAACTACTCAGATCCACCGGATAATTATTTCAGGATTCAACTAGTCACTACAATTCTGTTAAATATCAACAGGACCCCTGCAGCTTTTAC Spar.....: TATCAACAATCAGCCCAATCCTTTTTATTTGAATGATTCAGACCCGCCAGATAACTATTTCAGAATTCAGCTGGTCACCACGATTTTGTTAAATATCAAGAGAACCCCTGCTGCTTTTAC Smik.....: TATCAATAATCAGCCCAATCCTTTTTACTTGAACGATTCAGATCCACCTGATAACTATTTCAGAATTCAACTTGTCACCACAATTTTATTAAATATCAACAGGACACCTGCTGCTTTTAC Sbay.....: TATAAATAATCAGCCCAACCCTTTCTATTTGAATGATTCAGATCTACCTGATAACTATTTCAGAATTCAATTGGTTACTACGATTCTACTGAATATCAATAGAACACCAGCAGCATTTAC consensus: *** ** ***** ***** ** ** ** ** ** * ***** * ** ***** ******** ***** * ** ** ** *** * * ******** ** ** ** ** ** ***** 3000~3120: Scer.....: TAAGAAATGCAAACTTTTGCTGAGGTTTTTCGAGTATTATACTTTTATTAAAGAACAACCTTTACCCAAGGAAACAGAATTCAGAGTTTCAAGCACATTTAAAAAATATGAGAATATTTT Spar.....: TAAAAAATGCAAAGTTTTGCTGAGGTTTTTCGAGTATTATACTTTTATTAAAGAACAGCCTTTACCTAAGGAGACAGAATTTAGGGTGTCAAGCACATTCAAAAAATATGAGAGCATTTT Smik.....: TAAAAAATGCAAGGTTTTGTTAAGGTTCTTCGAATATTATATTTTTATCAAAGAGCAGCCCTTACCTAAGGAGACGCAATTCAAGGTGTCAAGTACATTCAAAAAATATGACAGTATTTT Sbay.....: TAAGAAATGCAAAGTTTTGTTAAGGTTCTTTGAATACTACATTTTTACCAAGGAACAGCCTTTGCCCAAGGAGACACAATTTAGGGTATCAAATACTTTCAAGAAATATGAAAGTATTTT consensus: *** ******** ***** * ***** ** ** ** ** * ***** ** ** ** ** ** ** ***** ** **** * ** **** ** ** ** ******** * ***** 3120~3240: Scer.....: CGGAAACACTAAATTTGAAAGGTCAGAAAATTTGGTAGAAAGTGCCTCAAGGTTGGAAAGTTTACTGAAATCATTAAACGCAATAAAAAGTAAAGACGACAGAGTGAAGGGATCTTCTGC Spar.....: CGAAAATGCTAAGTTTGAAAGGTCAGAAAACCTAGTAGAAAGTGCCTCAAGGTTGGAAAGTTTACTGAAATCATTAAACACAACAAAAAGCAAAGATAGCGAAGTGAAGGGACTTTCCTC Smik.....: CGACAATGCCAGATTTGAGAGATCAGAAACCCTGGTTGAAAGTGCCTCAAGATTGGAAAGTTTGCTGAGATCATTAA---CTACAAAAGGCAAAGAGAGCGAAGTTAAAGGAATTTCCGC Sbay.....: CGACAATTCCAAGTTTGAAAGATCGGAGAGCCTGGTGGAAAGTGCTTCAAGACTGGAAAGTTTACTGAAGTCATTAGACTCTACGAAAAGCAAAGGCAATGAGTCCGAAGGATTCGCCGC consensus: ** ** * * ***** ** ** ** * * ** ******** ***** ********** **** ****** * * *** * **** * *** * * 3240~3360: Scer.....: AAGCATTCACAACGGTAAGGAGAGTGCTGTTCCTATCGAGTCAATCACCGAAGATGATGAGGATGAAGATGATGAAAACGACGATGGTGTCGATTTACTAGGAGAAGATGAAGACGCGGA Spar.....: AAGCATTGACAATGGTAAGGAGAGCGCAGTTTCTATTGAAGTAATTGCAGAAGATGATGACGATGATGACGATGAAAATGACGATGGTGTGGATTTACTAGGAGAAGATGAAGATGTGGA Smik.....: AAGCATTGACGGTGATAATGAGAACGCAGCTTCTATTGAGGCTACTACCGGAGATGAT------GAAGATGATGAAAATGATGATGGTGTCGATTTGCTAGGAGATGATGAAGATGTGGA Sbay.....: AAGC------------AAAGTAGCCGCAGCTTCCGTCGAGGTAATTGCTGAAGATGACGAGGAGGAGGATGATGAAAATGATGATGGTGTCGATTTACTTGGAGAAGATGAAGAAGTGGA consensus: **** ** * ** * * * * ** * * * ****** ** ** ******** ** ******** ***** ** ***** ******** * *** 3360~3480: Scer.....: GATAAGTACACCGAACACAGAGTCAGCGCCAGGAAAACATCAGGCAAAGCAAGACGAAAGTGAA---------------GATGAAGACGATGAGGACGATGACGAGGATGATGACGATGA Spar.....: GACAAGCGTATTGGTCCCAGAGTCAGCACCAGAAAAAAGCCGGATAAAAGAAGACGACAGTGAA------------------------GATGATGACGAAGACGACGATGAAGACGAAGA Smik.....: GACAAGTGCACAAGTCATAGGGTCAGAGCCAGGAAAATATCAGGTGAAAAAAGATGAAAGCGAAGAGGACGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGACGACGA Sbay.....: GACAAGTGTACCAGATATTGAGTCTGCATCAGGGAAATGTGGAGAAAAACGAGAAGAAAGTGAA------------------------GATGACGATGATGAAGACGATGACGACGATGA consensus: ** *** * * *** * *** *** ** *** ** ** *** ***** ** ** ** ** ***** ***** ** 3480~3600: Scer.....: CGATGACGATGATGATGATGATGGAGAAGAAGGCGATGAGGATGATGATGAAGATGATGATGATGAGGATGATGATGATGAAGAAGAAGAAGACAGCGACTCTGATTTGGAGTATGGTGG Spar.....: TGATGATGATGAAGATGATGATGAAGAAGAAGACGATGATGATGACGATGATGATGATGATGGC------------------------GAAGACAGCGATTCTGATTTGGAGTATGGTGG Smik.....: CGACGATGACGATGACGACGACGACGATGATGATGATGATGATGATGATGATGATGATGACGATGATGATGATGACGATGATGGTGATGAAGACAGCGACTCTGATTTGGAGTATGGTGG Sbay.....: AGACGATGATGACGAGGACGATGATGATGATGACGATGACGAT---------------------------------------------GAAGAAAGCGATTCAGATATGGAGTATGGTGG consensus: ** ** ** ** ** ** ** * ** ** * ***** *** ***** ***** ** *** ************* 3600~3720: total....: ====== Scer.....: TGATCTTGACGCAGACAGAGATATTGAAATGAAACGAATGTATGAAGAGTACGAGAGAAAACTAAAGGATGAGGAAGAAAGGAAAGCGGAAGAAGAATTGGAAAGGCAATTTCAGAAAAT Spar.....: TGACCTTGACGCAGACAGAGATATTGAGATGAAACGAATGTACGAAGAATACGAGAAAAAGCTAAAAGATGAGGAAGAAAGAAAAGCGGAAGATGAGTTAGAAAGGCAATTTCAACAAAT Smik.....: TGACCTTGACGCGGATAGAGATATTGAAATGAAACGAATGTATGAGGAGTATGAGAAGAAGCTAAAAGATGAAGAGGAAAGGAAAGCGGAGGAAGAATTGGAGAGACAATTCCAACAGAT Sbay.....: TGACCTTGATGCTGATAGAGATATTGAAATGAAAAGAATGTATGAAGAGTACGAAAAGAAATTGAAGGATGAAGAAGAAAGAAAAGCGGAAGAAGAATTAGAAAGACAATTTCAACAGAT consensus: *** ***** ** ** *********** ****** ******* ** ** ** ** * ** * ** ***** ** ***** ******** ** ** ** ** ** ***** ** * ** Scer_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD 3720~3840: Scer.....: GATGCAAGAATCCATAGACGCAAGGAAAAGCGAAAAGGTTGTTGCCAGTAAAATTCCAGTAATTTCGAAGCCAGTCAGCGTTCAAAAACCTTTATTATTAAAAAAGAGTGAAGAACCTTC Spar.....: GATGCAAGAATCCATAGACGCAAGAAAAAGCGAAAAGGTTGTTGCCAGTAAAATCCCAGTAATTTCGAAGCCAGTCAGCGTTCAAAAACCTCTGGTATTGAAAAAGAGTGAGGAGCCTTC Smik.....: GATGCAAGAATCCATAGACGCGAGAAAGAGCGAAAAGGTCGTTGCTAGTAAAATACCCGTAATTTCGAAGCCAGCTATCGTTCAAAAACCTTTATTAATAAAAAGGAATGAGGAGCTTTC Sbay.....: GATGCAAGAATCCATGGACGCGAGAAAGAGTGAAAAGATTGTTGTCAACAAAATACCAGTAATATCGAAACCATTAAATGTACAAAAACCCTTATTATTGAAAAAAAATGAAGAGCCTTC consensus: *************** ***** ** ** ** ****** * **** * ***** ** ***** ***** *** * ** ******** * ** * **** * *** ** * *** 3840~3960: Scer.....: TTCAAGCAAGGAGACCTACGAAGAGTTATCCAAGCCAAAGAAGATTGCATTTACGTTCTTGACTAAAAGCGGTAAGAAGACACAATCAAGAATTTTACAATTACCAACGGATGTGAAATT Spar.....: CTCAAACAAGGAGAGTTACGAAGAATCGTCTAAGCCAAAGAAGATTGCATTCACGTTTTTGACTAAAAGTGGTAAGAAAACACAATCAAGAGTTTTACAGTTACCAACGGATGTGAAGTT Smik.....: CTCAGACATGGAGGGCTACGAAAAATTATCTAAGCCAAAAAAAATTGCGTTTACATTTTTGACTAAAAGTGGTAAGAAAACACAATCAAGAGTTTTACAGTTACCAACGGATGTCAAGTT Sbay.....: TTCAAACGTGGAAGCTGACCAAAAATCATCTAAACCAAAGAGAATTGCATTTACGTTTTTGACTAAAAGTGGTAAGAAAACACAATCAAGAGTTCTACAGTTACCAACAGATGTGAAGTT consensus: *** * *** ** ** * * ** ** ***** * ***** ** ** ** *********** ******** ************ ** **** ******** ***** ** ** Spar_spli: DDD 3960~4080: Scer.....: TGTCTCTGATGTCCTTGAAGAAGAAGAGAAACTAAAAACCGAGCGAAACAAGATTAAAAAGATTGTTTTAAAACGTTCTTTCGACTGAgattctt--ttgcgaatatagttctttaaatt Spar.....: CGTCTCTGATGTTCTTGAAGAAGAAGAGAAGCTGAAAACAGAACGAGACAAGATTAAAAAGATTGTTTTAAAACGATCTTTTGACTAAgaaattt--ttgcgaatatagttttttaaatt Smik.....: TGTTTCTGATGTCCTTGAAGAGGAAGAGAAGTTAAAAACAGAAAGAGATAAGATCAAAAAGATTGTTTTAAAACGCTCTTTTGATTGAgtaacctg-ttgcgaatatagttctttagatt Sbay.....: TGTTTCTGATGTACTTGAAGAAGAGGAAAAGTTAAAGACTGAACGAGACAAAATTAAAAGAATTGTCTTAAAGCGCTCCTTTGATTGAgagaattgcttgcgaatatagtttgtttaatt consensus: ** ******** ******** ** ** ** * ** ** ** ** * ** ** **** ***** ***** ** ** ** ** * ** * ************** ** *** Spar_spli: DDD 4080~4200: Scer.....: t-ttactatatatgcccacttatgtttggctctatt-aaatggctacgtg--tttatatagtaccgtttatgacgctgtatttttatttacactgctttccaggagattaaagagcggag Spar.....: tcttactatatatgctcacttatatttggctctatt-aaatggctttctg--cttatatagtaccgtttatggcgctgcatttttatttacattgcttcccaagagagtaaataacgccg Smik.....: t-ttactatatatgcagacttatatgtagctctattaaaatggccttgtg--ttcatatagtgttgtttatgacgctgcattcttatttacattgctcttcatgcg--tatataatgggt Sbay.....: t-ttactatatatgcacacttaatattagcattgtt-aaatagctgtttgcttttatatagtacagttgatgatgccgtaattctatttacagtacttgtaaaaaaaacgaacaacgatt consensus: * ************* ***** * ** * ** **** ** ** * ******* *** *** ** * * * ******** * ** * * * * 4200~4202: Scer.....: tg Spar.....: tg Smik.....: tg Sbay.....: cg consensus: * { alias......: [] chromosome.: 8 description: Hypothetical ORF end........: 298611 exons......: [(1, 125), (250, 1225)] gene.......: introns....: [(126, 249)] length.....: 1225 name.......: YHR097C plength....: 408 start......: 297387 tdist......: 264028 type.......: ORF up.........: 0 } Scer: 5 donors and 2 branches Spar: 6 donors and 2 branches Smik: 5 donors and 3 branches Sbay: 9 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 361), ('Spar', 361), ('Smik', 361), ('Sbay', 361)] ->[('Scer', 700), ('Spar', 700), ('Smik', 700), ('Sbay', 700)] ->[('Scer', 268), ('Spar', 268), ('Smik', 268)] ->[('Scer', 84), ('Spar', 84)] ->[('Smik', 1164), ('Sbay', 1164)] ->[('Spar', 1945), ('Smik', 1945)] ->[('Sbay', 19)] ->[('Sbay', 29)] ->[('Sbay', 55)] ->[('Sbay', 119)] ->[('Sbay', 911)] ->[('Sbay', 2460)] ->[('Scer', 2341)] ->[('Spar', 1987)] ] [ ->[('Scer', 768), ('Spar', 768), ('Smik', 768), ('Sbay', 768)] ->[('Spar', 1532), ('Smik', 1532)] ->[('Scer', 739)] ->[('Smik', 154)] ] 0~120: Scer.....: gcctcgctcaaaggagaccct----gtgcttacacgcagaaaactggaaata-acgacatattgttgtggctgtggccgatgcggttcgtatatccattactaaata-------attaaa Spar.....: ttcccactcgaa-gaggcctt----acgcgtatacgcagaaaaccggaagcgcacgaca-actgttgtggttgtggccggtgcggttcgtatatccattactaaata-------actaaa Smik.....: -acacaatttaa-gaaaccatatgcgtgcgtatatccagaaaactggaaatacacgacattctg-tgtggctgtggtcatggcgcttcgtataacgaatactaaataacaaattactaaa Sbay.....: -actca-tccaacgtagcc------gtatgtatgcgtttacggccaagaacgggcgtt-------cgtggctgtgcccggggcacctcgtatatctatttataaacta------aacaag consensus: * * * ** * ** ** * * * ** **** **** * ** ******* * * * **** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDDDDDDDDDDDD DDDDDDDDDDDDD D 120~240: Scer.....: tacgtaaatgaatgaatagactgatatgattgtgattt--------------ttacgtgttggctatattgtgcctttctgcattcacctgcgcctcctcatgtagaaaggcgttgatca Spar.....: tacgtaaatgaatgaatagactgatatgatagtga-tt--------------tgacgtggc-acactattgagcctttcttctttcacctgcgcctcctcttgtaggaaggcgttgatta Smik.....: tacgtaaatgaatgaatagactgatatgatagtgaactaacgtgttgtgggctaacgtgttggcaccattgtgcctttctccttt-acctgcgcctcctctaacaggaaggcgttgatca Sbay.....: tacgtagatgaatgaatagactgatgtgatagtgaac---------------ttacgtgctggcaccattgtgcttgtcttgattcacttgcgcc-cctttagcggaaaggcgttgatca consensus: ****** ****************** **** **** * ***** * **** ** * *** ** ** ****** *** * *********** * Smik_spli: BBBBBBB Sbay_spli: DDDDD 240~360: Scer.....: aggggaatacaggag-aagtatttttgggttcgtgttttggtggggttccagccacagaagggctctcggcagcgaaacgctgactatgctgagaatactgccaaaaaaaaaaaaaaggc Spar.....: agggg-atgcagaagaaagtatttttgggttcgtgtactggcggggttccagccacagaagggctctcggcagcgaaacgccgatgatgctgagaatactgcca----aaaaaaagaggt Smik.....: ggga--atgcaaaaggaaatgtctctgggttcgtgttttggtgggg-tccagccacagaagggctctcggcaccgaaacgccgatgattctgataaagctgcc-----aaaaaaaaaggt Sbay.....: agggg-atgtagcagaaaattcccttggttcaaggtcttggtgggg-tccagccacagaagggcttccggcagcgaaacgccgatgatgctgat-acactgccaaaaaaaaaaaagaggt consensus: ** ** * ** ** * *** * ** *** **** ****************** ***** ******** ** ** **** * ***** ******* *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 360~480: total....: ====== Scer.....: agtatgtgaaacgcaggcagagaaagggtgaaattctacataggatgagagaatctcataattacagggataaaactgtagctttgcttcctcttttatctttattttt---tcttgact Spar.....: agtatgtgaaacgcaggaagagaaagggtgaaattttacataggat--gagaatctcataataacagggataaaactgtagctttgcttcctc-tctatctttatttcttactcttgatt Smik.....: agtatgtgaaacgcagaaagagaaagggtgaattcctA--TGAGATGTCAGAATCTCATAATAATAGGGATAAAAGTTGCAGTCTGCTTTCTTCTTATCTTTTATTTCGA--TCTTAACT Sbay.....: agtatgtgaaacgcaagaagagaaagggtgaaattttacatgggctgggaaaacagcataataacagagaaagatttctgtagcttgtttctcttcaatttttattttat--tcttgatt consensus: *************** ************** * ** * * * * ** ****** * ** ** * * * * ** ** * ******* **** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 480~600: Scer.....: gtcttctggtaaatcttgcaaaattactactat--tttgtatttcagaagcgttttttccaaagaatactatatc---aaac-----agacgcaaATGAATCAAACAGGAAGGACCATAG Spar.....: -tctttcgctaattcttgcaag---aatactat--tttgtacttcacaaaca-attttcgaaagaacactatact---aaac-----aaacacaaATGAATCAAACAGGAAGAACCGTTG Smik.....: TTCTTCTACTAAATCTTGCCAGAGTAAGGATACTATTTGTACTTCAGAGACAATATTCTGAGAGAATACTATACC---AAATAACGAAGAACTCAATGAATCAAACAGGCAGAACCATTA Sbay.....: ttctctcactga-tcttgtcga---aatactat--attgtgctttaaaaaca-agcttcgagagaataccataccaagaaataaaagataacataATGAACCACTCAGGCAGAACCCTTG consensus: *** * * ***** * ** **** ** * * * * * **** ** *** *** * * ****** ** **** ** *** * 600~720: total....: ====== Scer.....: GCGGTCCTCAAAATGGCGTGAATACAGTGATTAACCCCTTCAGAGTTTCTCCTTCAGAGGACAGAGTATCAAGCAGGGATGAAACGCCCAGGAATTATAAGTATGTGTAGCTCCACTCCC Spar.....: GCGGTTCTCAAAATGGCGTGAATGCAGTGGTTAACCCCTTCAGAGTTTCGTCTTCGAACGATAGGGTACCAAGCAGAGATGAAACTCCCAGAAATTTTAGGTATGTTGAGCTACAATCCC Smik.....: GCGGTTCTCATAATGGTGCAAATACAGTGGCCAATCCCTTTAGAGTTTCGCCGTCTGATGACAGAGTCCCAAGCAGGGATGAAACCCCCAGAAATTACAAGTATGTAGAGCTACAATTCT Sbay.....: GGGGTTCTCAAAATAGGGCAAATCCCGTAGTCAATCCATTTAGAACCTCGCCTTCTGAAGATAGAGTACCAAGCAGAGACGAAACGCCCAGAAATTACAAGTATGTTGAGATAACAACCC consensus: * *** **** *** * * *** * ** ** ** ** *** ** * ** * ** ** ** ******* ** ***** ***** **** * ****** ** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >=================== 720~840: total....: ======= Scer.....: AAAATTGCACT-ACAGTGTAACTAACAGTCATGACTA---CTTCAGAATACTAACTTAACTCTTTTTCTCCTTTCAAAATCGATTGAGATAATCCATAATTATT--GCAGTAACCCATTT Spar.....: AACATTGCACTGACAGTG----TAATAGTCATGACTA---CTCCAAAATACTAAC-TAGCCTTTTTTCTCTTTCCAACATTGATTGGGATAATCCACGATTATT--GTAGCAACCCGTTC Smik.....: AACATAGGACATTCGATG----CAACAATCATGACTC---TTTCA-AATACTAAC-TGGATTTTATCTCCTTTCCATTGCGGATTTGAGCAACCGATAGCTATT--GTAGTAATCCATTT Sbay.....: AGAAGGCTACACGAGCCT---GTAGGATTTACGACTCTTTTTTCTAAATACTAA--CAGTTTTTTTTC----TCCAATGCCAGTTGGAAGAATCCATACTTGTTTCATAGCAATCCATTT consensus: * * ** * * * * **** * * ******** ** * * ** ** ** * * * ** ** ** ** ** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBBBB known....: ============================================================================================================>= 840~960: Scer.....: TTAAATGAAGATGACACTAGGAGGGCCCATAACAGTAGCGTTTCCAATTCTAGACAAGAAAGACTCCCATCATATGAAGAAGCTGCGGGGACACCGAAACAGCAAGCTCCATACCCAAAA Spar.....: TTAAATGAAGAGCATACTAGGAGGTCGCATAACAGTAGCGTATCTAGTCCTAGACAAGAAAGACTCCCATCTTATGAAGAAGCTGCTGGAACACCGAAACAGCAAGCCCCATACCCTAAA Smik.....: TTAGATGAAGAGGATAATACTAGGTCGCAAAATAGCAGTGTTCCCAATCGTAGACAAGAAAGACTCCCATCATATGAAGAAGCTGCGGGGACATTAAAACAGCAATCTTCATATCCAAAA Sbay.....: TTTAACGAGGACGAGAATACCAAGTCGCAGGATAGGAGTGTCCCCACTCATAGACAGGAAAGGCTCCCATCGTATGAAGAAGCTGCGGGGAAACAGAAACAGCAAGCTCCATATCCGAAA consensus: ** * ** ** * * ** * * * ** * ** ** ** * * * ****** ***** ******** ************** ** * * ********* * **** ** *** Sbay_spli: DDDDDD 960~1080: Scer.....: GAAAAGAAACGCAGTAGTGGTTCAAATAGTCACCAACACAACCACCACCACCATCGTCGTACATCACACGGACATAGGGACAAAGATAAGCAGAAGAGCAAAAGCAGAACCAAGGTTAAG Spar.....: GAAAAGAAACACAGTAGTGATTCAAGTAGTCACCACCACAATCACCGCCACCGCCGTT---CATCACACAGTCACAGGGATAGAGATAAGCAGAAGAGCAAAAGCAGAACTAAGGTCAAG Smik.....: GAAAAGAAGCATGGTGGTAGTTCGGGTACTCACCATCACAGTCACCACCATCGCCGTT---CCCCACATAGTCATAAGGATAGGGATAAGCAAAAGAACAAAAGCAGAGCTAAGGTTAAG Sbay.....: GAGAAGAAACACAGCAGTGGCTCGGATAGCCACCAACACGGTCACCGTCATCGTCGAT---CATCACACAATCACAGGGACAGGGACAAGCAGAAGAGTAAAAGCAGGAGTAAGGTCAAG consensus: ** ***** * * ** ** ** ***** *** **** ** * ** * **** ** * *** * ** ***** **** ******** ***** *** 1080~1200: Scer.....: CCCCCTAAAAATGTAGACACTATTGACAAGATGGATGTTACAGGATTATTTGGCGGATCTTTCCATCATGACGGCCCCTTTGATGCATGCACTCCACAGAGAAATAAGAATAATAAAGTG Spar.....: CCCCCTAAAAATGTTGACACTATTGACAAGATGGATGTTACAGGATTATTTGGTGGATCTTTCCATCATGATGGGCCCTTCGATGCATGCACTCCACAGAGAAATAAGAATAATAAAGTG Smik.....: CCCCCTAAAAATGTGGATACTATTGACAAGATGGATGTCACAGGACTATTTGGTGGCTCTTTCCATCATGATGGTCCTTTCGATGCATGTACCCCGCAAAGAAATAAGAATAATAAAGTA Sbay.....: CCCCCTAAAAATGTGGATACAATTGACAAGATGGACGTTACAGGGTTGTTTGGCGGATCTTTCCATCACGATGGTCCCTTTGACGCATGTACCCCACAAAGAAACAAGGATAACAAAGTG consensus: ************** ** ** ************** ** ***** * ***** ** *********** ** ** ** ** ** ***** ** ** ** ***** *** **** ***** Smik_spli: DDDDDD Sbay_spli: DDDDDD 1200~1320: Scer.....: GCGCCTGTACTGGCCTTCCCAGCAGATGGTCCAAATAATACAGTAGGCGGCCGCACAAGTAAGAAGTCTACCTTAGATGAGGTGTTTGGTAGGGAAACAGTAGACGACGATTCTGAGACG Spar.....: GCGCCTGTACTGGCTTTCCCAGCAGATGGTCCAAACAACACCGTAGGCGGCCGCACAAGTAAGAAGTCTACCTTAGATGAGGTATTTGGCAGGGAAACTGTAGATGATGATTCTGAGACG Smik.....: GCCCCTGTACTAGCTTTCCCAGCGGATGGCCCAAACAACACTGTAGGCGGTAGCACAAGTAAGAAGTCCACATTAGACGAGGTATTTGGTAGAGAAACACTAGACGATGATCCCGATACG Sbay.....: GCACCCGTGCTAGCGTTTCCAGCGGACGGTCCAAACAATACAGTCGGTGGTGGCACCAGTAAGAAATCTACTCTAGATGAGGTCTTCGGCAGAGAAACAGTGGACGAGGATCCTAGTAGG consensus: ** ** ** ** ** ** ***** ** ** ***** ** ** ** ** ** **** ******** ** ** **** ***** ** ** ** ***** * ** ** *** * * * 1320~1440: Scer.....: CTGAACCAACTACAAGATAGAGCATATTTATTCAATAAGGCCAATTCCAGTACTACGACTTTGGATGCGATTAAACCGAATTCAAAAAATATTACCCAGTTCGATTCCAAAATGAAAACT Spar.....: CTAAATCAACTGCAAGATAGAGCATATTTATTTAATAAGGCCAATTCCAGTACTTCAACCTTGGATGCCATTAAACCCAACTCAAAAAATATTACCCAGTTCGACTCCAAAATGAAAACT Smik.....: CTGAATAAAATGCAGGATAGAGCATACCTATTCAATAAGGCCAACTCCAGCACTTCAACTTTGGATGCGATTAAACCAAACTCAAAAAATATTACGCAATTTGACTCCAAAATGAAAACC Sbay.....: TTGAACAATCTGCAAGATAGAGCATATTTGTACAATAAGGCCAATTCCAGCACCACCACGTTGGACGCGATCAAGCCAAACAAAAAGAACATTACACAATTTGACTCTAAGATGAAAACC consensus: * ** * * ** *********** * * *********** ***** ** * ** ***** ** ** ** ** ** *** ** ***** ** ** ** ** ** ******** 1440~1560: Scer.....: GAACTAGTCCATGGGCCCATTACGATGGGTCTAGGCTCAACGACGTTCCTGGATGGCGCACCAGCGTCTTCCGCTGCCATAGAGCAAGATGTTATCAACCACGCACAAGAATCTCGTAGG Spar.....: GAACTTGTCCATGGGCCTACGACGATGGGCCTAGGTTCAACAACGTTCTTGGATGGGGCACCAGCGTCCTCCGCAGCCATAAAGCAAGACGTTATTAACCACGCACAAGAATCCCGTAGG Smik.....: GAACTTGTTCATGGACCGACTACAATGGGCTTAGGTTCAACGACGTTTTTGGATGGGGCACCAGCATCTTCCGCAGCCATAAAGCAAGATGTTATTAACCACGCACAAGAATCCCGTAGG Sbay.....: GAACTCGTTCACGGGCCCACAACGATGGGGCTAGGGTCGACGACATTCTTGGACGGAGCCCCGGCGTCGACTGCAGCCATAAGGCAAGACGTTATCAACCATGCACAAGAGTCCCGTAGG consensus: ***** ** ** ** ** * ** ***** **** ** ** ** ** **** ** ** ** ** ** * ** ****** ****** ***** ***** ******** ** ****** Spar_spli: BBBBBBB Smik_spli: BBBBBBB 1560~1680: Scer.....: AAAAACAGCATAGCAAGAAAAAAGTCTCTCCCCTCAAGAAGACATCTACAAGTGAACAACAACAATTTAAAGCTAGTGAAAACACATAGTGGACACTTGGAGCAAAAGGA---------C Spar.....: AAAAACAGCGTAGCAAGGAAAAAGTCTCTTCCCTCAAGAAGACATCTGCAGGTGAACAACAACAATTTAAAGCTAGTGAAAACACATAGTGGACACTTGGAGCAAAAGGAGCAAAAGGGC Smik.....: AAAAATAGCATATCAAGGAAAAAATCTCTTCCCTCGAGAAGACATCTACAGGTGAACAATAACAATTTAAAGCTTGTTAAAACACACAGCGGCCACTTGGAGCAAAAGGGCC------TA Sbay.....: AAAAACAGTATATCAAGGAAAAAATCGCTCC---CAAGAAGGCATTTGCAGGTCAACAATAATAATCTAAAGCTCGTCAAGACGCATAGCGGGCACCTGGAGCAAAATGA---------A consensus: ***** ** ** **** ***** ** ** * * ***** *** * ** ** ***** ** *** ******* ** ** ** ** ** ** *** ********** * 1680~1800: Scer.....: GTAGACGATAATAGAACTTCTGTTCCGGTCACTGCCACCCAAGGAAGCGGTCACGAAGATGTTGTTAAAAAGGAAAACACCGGCAACAAGCTATTAAGGAGGGTGAAAAGCTTGAAAACT Spar.....: GTAGACGATAACACTAAATCTGCTACCATCGCTGTCAATCACGGAAGCGGCCACGAAGATGTTGTCAAGAAGGAAAACACCGGAAACAAGCTACTGAGGAGGGTAAAAAGCTTGAAGACT Smik.....: AGCGGCAGTACTACAACTTCTGCTACAACCGCCTCCGATCACGTAAGCGGCCACGTCGATATTGCCAAAAAGGAAAATACTGGGAACAAGCTACTTAGAAGGGTGAAAAGCTTGAAAACT Sbay.....: ACTAGCGACAAT------CCTACTACTGCCTCCACCACCTACGGAAGCGGCTACGATGATGTCGCCAGAAATGAGAATACCGGGAACAAGTTGCTGAGAAGAGTGAAAAGTTTGAAAACC consensus: * * ** * * * * * * * ****** *** *** * * * ** ** ** ** ** ****** * * ** ** ** ***** ***** ** 1800~1920: Scer.....: AGTAAAAAGCACTGAtcaatgcttctttcttgcgttctttttg-ttgcgc--ccatatattatttta-tttattac-attcatatagcaatatttaccttattttattggtt---acttt Spar.....: AGTAAGAAGCAGTAAtctttgctt-tttcttgcttttttttagtttccgc--tcatatattactttagtttattat-atttatgtagcaaaattcactttattttatt-gtt---gcttt Smik.....: A---AGAAGGGCTGAt---tgtttgcttcttacttcttctgttcttcctctgccatatactatttaa-tttattat-aattatatcgcaaaacctcttttgttttattggttgtaacttt Sbay.....: GGTAAAAGAAACTGAtccatgtttttttgtctgttcttcctt----------ctacatactaccaccgttatttataatttacatagtattcttcgttt--atctattattt----cttt consensus: * * * ** ** ** ** * * * * *** ** ** *** * * * * * * * * **** ** **** 1920~2040: Scer.....: tctat----acgcaaaatcactacactatgttatgttaaggtctccgatacgggaatataccaatcaatacttatcacttcggattttttatgggtcttatccccactgttccattttct Spar.....: tccat----aggcaatattact-tagtatgttacgttaacgtccgtgatacgcaagtacaccgataggtatgtactactttgcttttttgac-gctcttatccccactgttacaatttct Smik.....: ttcgcaataacccgcactccctgtagtaagttatgtggaggtatctaatgagctagtgtaccaaacagtat-tgccg----ggcgttttaatagctgttatccccaccactcccatttct Sbay.....: tttgt-----------tttaatctagttcatttt----agctatc----------ataaacccgaagacaaacatca------------gatag-tggcgaccccact-------tatct consensus: * * * * * ** * * * *** * * * * ****** * *** Spar_spli: DDDDDD DDDDDD Smik_spli: DDDDDD 2040~2160: Scer.....: tgtt-taaggcatcccggaggataaactaaaaaggtggcccatcccacccgaaatgaaagtaatcatctgctagcaaaaagtaaagaaatgagagcatgct------------------- Spar.....: tgtt-taagacatcccgga-gataaatt--taaggctcgccatcccacccgaaatgaaaataatcatttgccagcaaaaagtaaagaaataaagatctgctatgttgaggaatctcactg Smik.....: tattataaggcatcccggaggataattc--tctagctagccatctaatacagatctaaagtaaatgtttgccagcaaaaggtaaagatataaggactacgatgaaaatggaaacccactg Sbay.....: agaagtgaagatttactgacaaaa------tgtaaagaaccaagacgaggggaattggaagggaaacccactgcgaggtcccggctaaatggtgatgcact------------------- consensus: * * * * ** * * *** * * * * * ** 2160~2280: Scer.....: -----------------gtgatgtactggtggacgaaattgtgacccatacccacc--gaagaaacatccgcatgacgtgttactgttacttcccggattaagggatgcattctaactct Spar.....: cgagctgtgcccaagaagcgacgcactggctga-gagaatgtaacccatacccatc--caacaaacatcctcatgacg------tgttacttcccggattaagggatgtaggctaacttc Smik.....: cgagccatacacctg--tggaggcaccggctgacgaaaacgtaacccatacccacc--catcaaacttctgcatgacg------tgttacttctcggatcaagggatgcgtatatatcat Sbay.....: -------------------ggcgta---gacaagaaggata-gacccatacccacctgcgagaaaaatctgcgtga--------tg-----tcatggattaaggggt----accggcgtt consensus: * * * * * * *********** * *** ** * *** ** ** **** ***** * 2280~2400: Scer.....: gtgcgcccttttctctgcagttgatccgcat-tccccgtggctgtgcacattagggg-acagtaagtaattcactttctgatcccgcactcatagcg-------atggaataatataccg Spar.....: gtacgcccttttctccgcagttgatccgcat-tccccgtggctgtgcacattagggg-acagtaggtaatactctttctgattccgcactcatagcg-------gcagaacaatataccg Smik.....: gtgcgtccttttctttgcagctaaccggcat-tctctatggctgtgcgcataagggg-acggctacgaata-tccttctgattccgcactcattaca--ttactctggccttttatagcg Sbay.....: gtgcacccttttctccgcagttgatccgggtcttcccgtggctgtgcaaattaggggcgcgctgaataatacccttactgattccgcactcatcgcaaattgcagtagaacatatttcaa consensus: ** * ******** **** * * * * * * * ********* ** ***** * *** * * ***** ********** * * * Scer_spli: DDDDDD 2400~2520: Scer.....: gat-ttcacaccttgttattgagtg---aagtactgcttggtg-a-aatgatatctttatgttcaatattaatggtcgtgtggatgaatatatgggcatgggt----taattagttttag Spar.....: ggt-tt-gcgctatgccattaggtg---aaataacatttgatg-atagtgatatctttaggttcaatattaatggtcgtgtgcgtga--atgtgggcatgggt----taattagatttag Smik.....: gac-tt--tgttacaagatagagga---aaatagcagtcgaaatataacgacctctctaaattcgatattgatgtcccttataatga--atataggcatgggt----taattgaatttag Sbay.....: aacactctgggcgtgtaaatgagcaattaaagacgatgggatggatggatgatggtacaagtatgatatcgataatcctgatcaagg--acatgggcatgggcatgggcatgggttaaaa consensus: * * * ** * * * * * * **** ** * * * * * ******** ** * * Sbay_spli: DDDDDD 2520~2640: Scer.....: gggcacggagtaaacaag-aaaggagggccagaatcattagtagagtacctcaagtttggtttctttttgatttcacgtataaaagagtctc--tctcttttcttttcatgctagtcgaa Spar.....: gggcacggagtaaagaagaaaagaagggccagaatcattagtatggcacttcaagtttgctttctttttgatctcatgtataaaagagtctc--actcttttcttttcttgatagtcgaa Smik.....: gggcacggagtaaagaagaaaggaatggctagactta--------gtacatcgagtttggtttctttttgatttcacatataaaagagtctctttctcttttcttttcataatgtttgaa Sbay.....: agtttaggggaaaagaagaaaggaagggcgagaact----------ggcctcacatataa---------------aagta-atgatgatctc--cttcttttcttttcgtataattcatt consensus: * ** * *** *** ** * * *** *** * ** * * * ** * * **** ************ * * 2640~2760: Scer.....: c-ggttctccctctaagaataagaaactatc-aaaagaaagagaaaagtcgattgaataatttttctatatataatatacgc-aaacaag--attcgcttt-cactttgcaattttactt Spar.....: cgggttctcctttcaagaagaagaaactattaaaaagaaagacaaaaatcgatcgaataattcacctatatataatatacgc-aagcaag--attcattttactttttgcattcttactt Smik.....: taagttctcctcttgagagaagaaaaccagcaaaagaaaagaagaagat--atcaaataattt-tctatatataattctttcaaagcaag--tttctatttcacttttgcattcttactt Sbay.....: caactattctccttctggggtggtaac-----aatagttacagc-------atcaaataattcatctatatatataaaattc-aagcaagcctttttgttttattttagcgttcttagtt consensus: * ** * *** ** * * ** ******* ********* * ** **** ** *** ** ** * *** ** 2760~2831: Scer.....: catagctttgttaaaaccagcaaaaaatattatttttctagaaaaaagaatatattagaggtaaagaaaga Spar.....: catagattttttaaaacaaacaaagaatactattttcc---ataaaaaaatatattagaggtaaaga---- Smik.....: catagctttattaaaattagcagaacagaattctctaaaagaaaagaaaatagattagagataaaga---- Sbay.....: catagc-ttatcataatagctagaaaaatcaactacaacaaaaaagaaaagatattagaga-aaaga---- consensus: ***** ** * * ** * * * * * ** * ** * ******* ***** { alias......: ['BIG1'] chromosome.: 8 description: involved in cell growth and size end........: 315970 exons......: [(1, 110), (198, 1095)] gene.......: BIG1 introns....: [(111, 197)] length.....: 1095 name.......: YHR101C plength....: 365 start......: 314876 tdist......: 246669 type.......: ORF up.........: 0 } Scer: 7 donors and 3 branches Spar: 4 donors and 1 branches Smik: 4 donors and 2 branches Sbay: 5 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 730), ('Spar', 730), ('Smik', 730), ('Sbay', 730)] ->[('Scer', 416), ('Spar', 416)] ->[('Scer', 542), ('Sbay', 550)] ->[('Scer', 912), ('Sbay', 912)] ->[('Smik', 83), ('Smik', 89)] ->[('Sbay', 233)] ->[('Sbay', 935)] ->[('Scer', 156)] ->[('Scer', 1490)] ->[('Scer', 1724)] ->[('Smik', 618)] ->[('Spar', 1568)] ->[('Spar', 1834)] ] [ ->[('Scer', 776), ('Spar', 776), ('Smik', 776), ('Sbay', 776)] ->[('Scer', 1625), ('Sbay', 1622)] ->[('Sbay', 1746)] ->[('Scer', 595)] ->[('Smik', 859)] ] 0~120: Scer.....: --tactgcctgttctctatacgtgttttgcttgccagtcgatggcg-cccaaatttatactttttgtttctttatctgtgtactgttaaaagtagtactgttaaaagtagtaagctcctt Spar.....: --tactgtctgttttctatacgtgtcttgcttgccagtttatggcgccccagagctatactttctgtttctttatctatgtactattaaaagcggca--------------aaact-ctc Smik.....: --cactattttctccctatatgtgtcttacttaccagtctattggg-ccctaagctatactttttttctgtctctttatatacgtatgtgtac-gtactatcaaaacagcagaaattcag Sbay.....: tatccactcgtttctatatgtgtgtcctgcttaccagctgatgacg--ccagagctgta--ttatgcctgtctttcaat---caggagaaggt-----------------caggcttctc consensus: * * *** **** * *** **** ** * ** * * ** ** * * * * * * * * * Smik_spli: DDDDDDDDDDDDD 120~240: Scer.....: agaaagcggttccgcctaatagttcctaacttgt-tgtatgtggcttcacgtaggacgagttgcctctgttcttctttgacttttgccacgtcggcaagctgctgctc------t-tgtt Spar.....: ggaaggcacttccgtctagtatctcct-gcttgc-tgtatatatcttcacgtaagaccggctgcctctgttc-tctttgacttttgccacgtcggcaagctgctgctc------t-tgtt Smik.....: gaaaccgtttttcgtctagtgtctgctaatttctgtgtatatggcaccacgcaatatctattacctttgtcc-tctctgacttttgccacatcagtaacctgctattcttactgt-tgtt Sbay.....: gaaaggcgactccgtgaagtatcttcc-agttgt-ggtatatgtcgatgcacgcgatcggctgcttctgtgttgctct-cctcttgccacgccagcaagttactgctgttgctgcatgtt consensus: ** * ** * * * * ** **** * * * * * * * *** ** * ** ******* * * ** * ** * **** Scer_spli: DDDDDD Sbay_spli: DDDDDD 240~360: Scer.....: gatgcctttaaagattgtcagatcggcctgagatcgacgtgtggcatgat-aatgttgctcgatgggctgtaaatagataagaaagagtgaaacgaatagagt-aacgaggccacagatg Spar.....: gatgcctttaaagattgtcagatcggcctggggtggacgtgtggcatgacaaatactgttcgatgggctatacatagatagaaaagaatgaaaagaccagagtaaatgaggccacaggtg Smik.....: gatgtctttaaagattgtcagatcggcttgggctggacgtgtggcatgacaaat-ccgtt-gatgggctaagagtgggcaagaaaggatgcaa-gagcagact-tatgaggcaacagtgg Sbay.....: aatgcctttaaagattgtcagatcggcctgcgctggacgtatggcatgac-aaggttgctcaatgggctaaaagtggtcaggacaagatgaaaagagtagcgt-aatgaggccaaagagg consensus: *** ********************** ** * * ***** ******** ** * * ******* * * * * * ** ** ** ** * * ***** * ** * 360~480: Scer.....: tggcgaaacctgggaggatatgttctaacgttatct-agagttctgatagagcattgtatgcgatagtaccgctgacatatgtgcattcttta--attatatcgatgatatcatgcaaca Spar.....: tggcgaaacttggcaggaggtgctttaccgctgtgt-ggaggtctgatagggcattgtatgcgataataccgctagcatatgtgcattcttga--attatagcgaagacatcatccaaca Smik.....: tggcaaatcttgagagaaagcaccccacgagtatttcagacgtctgatagtgcatcgtagtcaataaagcttcagtcatatgtgcattcttga--gttgtagcgtagacatcatgcaaca Sbay.....: tggcaatatttccgggaag--agcctaccagtgact-gggggtctaatggggtgttctatgtggcagaactgcgaagatacctgcttccactgccgctgcggcgac-atatcatgcagta consensus: **** * * * * * * * * *** ** * * * ** * * * *** *** * * * ** * ***** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD 480~600: Scer.....: cgggttagctctgtagtaatgtaaacctctcttaactacggccaagaatatcagcagcggaggttaagttgcagg-ttatacctatctgttttgtagttaggaaacgtaggcgcatacta Spar.....: cgggttagttttgtagtattgtaaggctttcctgattacggctaagaatgccagcagcggtggttaaattgcagg-ttttatctatttgctttctaggtgaggaacataggtatatattg Smik.....: cggg-taggtctgtggtattgtaatgctttcttgattacgactaaggatactagcagcggtcattcaattgcaagcttttatctatctattatcttggtggtgagcatagctgtgtgtta Sbay.....: cggg-tacattcagagtactataaagct-tcttgatgaccgatgcggctattaatagttgcactagtattgtatg--tgtagagtgtagttgttttgg-gaggaacatagctgtgtatta consensus: **** ** * *** * *** ** ** * * ** * * * ** * * *** * * * ** * * * * * * *** * * Scer_spli: DDDDDD BBBBB Sbay_spli: DDDDDDDD 600~720: Scer.....: attaggagtagcaaggcaagATGCAAACTGTGTTGAAATATTTGTTGCTTATTATGTGTGGAAGCTTTTGTGCTTCGGAGGAATTGCAAAACCAGACCAATGTTCCTGCAATATTCTTCT Spar.....: gttagaaatagcgaacaaagATGCATATTGTGTTGAAATATCTGCTGCTTATGGTGTGTGGAAGCTTTTGTGCTTCAGAGGAGTTGCGAAACCAGACTAATGTTCCTGCGATATTATTCT Smik.....: catagaagtagtaagagagtatgcagatagtgttaagatacctgctttttatggtgtatggaagcttttgtgcttcagaggagttgcggaaccagaccaacgttcctgcaatattattct Sbay.....: cttgagggagacaggaaaggatgcggatagtattgcgatacctgctgtttatggtatatgcgagcctatgtgcttcggaggagttggtgaaccagactaatgttccagcaataatgttct consensus: * * **** * ** ** *** ** * **** * * ** *** * ******** ***** *** ******** ** ***** ** *** * **** Scer_spli: BB Smik_spli: DDDDDD 720~840: total....: ====== ======= Scer.....: CTTACAAACTGTATGTAGAACAAGAAACATTAATCTTTAGTAACTTTCATTTTTCTTACTAACTAGATGTTATACACATATTTGTACTTT-TGGATAGAACTCCCGGTATTTTAAAGTAT Spar.....: CTTACAAACTGTATGTAAAGCAAGAGATGTTCCTCTTTAGTAACTTTCA-TTTTCTTACTAACTAGACCTTAAACGCGTGTTTGTATTTTCTGAATAGAACTCCTGGTATTTTAAAGTAT Smik.....: cctacaagctgtatgtaaagcaagcaatataaatcttcagtgactttcatttttcttactaactacattttttacacgagtttgtatttA-TGGATAGAACTCCTGGTATTTTGAGGTAT Sbay.....: cctacaaactgtatgtagagcaagaaatgtt--tgttcggtgattttcg-ttctcttactaactgagatgtgcacttgtctttgtatttt-tggatagaacgcctggcattttaaagtat consensus: * ***** ********* * **** * * * ** ** * **** ** *********** * ** ****** ** ** ******* ** ** ***** * **** Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >=====================================================================================>= 840~960: Scer.....: CAAGAGGATTATGATAGGGCTGTGACTTTACCAAGAGACACCTTTATTGAAGCGGCTGAGAAATTCTTAGGTGTATGTAATGCTGACACTTATGTGTTTATTAATCAACCAGGCCTGAGG Spar.....: CAAGAAGATTATGATATGGCTGTGACTTTACCAAGAAGCACTTTTATTGAAGCGGCTGAGAAATTCTTAGGTATATGTAATGCCAACACTTATGTGCTTATTAATCAACCAGGACTAAGG Smik.....: CAAGAAGATTATGATATGGCACTAACTCTGCCAAGAAGCACCTTCATTGAAGCCGCAGAAAATTTTTTAGGTACATGCAATGCCAACACATATGTGTTAATTAATCAACCGGGACTGAGA Sbay.....: caagagggctatgatATGGCTCTGAAGCTACCAGCGAGCGACTTTCTCGAAGCGGCAGAGAAGTTTCTGGGCGTATGCAATGCCAACACCTATGTGTTCGTTAACCAGCCGGGACTGAGG consensus: ***** * ******* *** * * * *** * ** * ***** ** ** ** ** * ** *** ***** **** ****** * **** ** ** ** ** ** Scer_spli: DDDDDD Smik_spli: BBBBBBB Sbay_spli: DDDDDD DDDDDD 960~1080: Scer.....: AAATTGGACTTCTTGGAATTTGAAACAGAGTTTGTTTCGTTACAGAGATATATAAGACGGAGTTCAACCGCGATTAAGTTCGAAAAGGTAGACCTATTGCCTCAAGATTTATACTATGAT Spar.....: AAATTGGACTTCTTGGAATTTGAAACAGAGCTCGTTTCGCTACAGAGATATATAAGACGGAGTTCAACAGCAATTAAATTCGAAAAGGTAGACTTGCTGCCCCAAGATCTATATCATAAC Smik.....: AAACTAGACTTCTTGGAATTTGAAACAGAGTTTATTTCGCTACAGAGGTATATAAAACAAAGTTCGACAGCAATTAAGTTCGAAAAAGTGGATCTACTGCCCCAAGAACTATATGATGAC Sbay.....: AGGCTAGATTTTTTGGAGTTTCAGACTGAGTTTACCTCGCTACGAAGATATGTAAGACAGAGTTCAACAGCAATTAAGTTCGAAAAAGTGGAGCTACTGTCTCAGGATTTTTACGATGAC consensus: * * ** ** ***** *** * ** *** * *** *** ** *** *** ** ***** ** ** ***** ******** ** ** * ** * ** ** * ** ** * 1080~1200: Scer.....: CTTGCAGAGTTTGTAAAGGAGTATTGTAACGTAGACCAGGTGTTGAACTTACGAGGTAATAATACAGAAGATTTCCAGCCCTTTATTGATAGCGAAAAAAGAGTGATTATAATAGAGTAC Spar.....: CTTGCAGAGTTTGTAAAGGAGTATTGTAACGTAGACCAAGTGTTGAGGTTGCGAGGTAACAATACGGAAGATTTCCAGCCCTTTATTGATAGCGAAAGAAGAGTGATTATAATAGAGTAC Smik.....: CTTTCAGAGTTTGTGAAAGAGTATTGTGATACAGCCAAAGTTTTGAGATTGCGAGGTAATCATACAGAAGATTTTCAGCCTTTCATTGATAATGAGAAAAGAGTAATCATAATTGAGTAC Sbay.....: CTTGCAGATTACTTGAAGGAGTACTGCGACGTAGGACAAGTGTTGAAACTACGAGGCAATCATACGGAGGATTTTGAGCCCTTTATTGACAGCGAGAGGAGGGTAGTCATCATCGAGTAT consensus: *** **** * * ** ***** ** * ** * ** **** * ***** ** **** ** ***** **** ** ***** * ** * ** ** * ** ** ***** 1200~1320: Scer.....: CCTAAGTTACCAGAGGACACTAATGAACGTAAAGAAGCATTCCGCCATTATGACAAGTATTTGAGGACTATACTGGCGCAGATTCCGTCGCCAGAACAAAATGTCATTTACACCTCGTTA Spar.....: CCTAAGTTACCAGAAGACACAAATGGACGTAGAGAAGCATTTCGCCATTATGACAAGTATTTAAGGACAATACTGGCGCAGATTCCGTCGCCAGAACAAAAAGTCATTTACACCTCGTTG Smik.....: CCAAGGTTACCAGAAAACACAAGTGAACGTAGAGAGGCGTTTCGCCATTATGACAGGTACTTGAGGACCATATTAGCGCAGATTCCGTCACCAGAACAAAAAATCATCTATACCTCATTG Sbay.....: CCGATGTTACCACAAGATACACATCTACGTAGGGAAGCCATCGGCCATTATGACAAGTACTTGAGATTCGTACTCGCACAGATCCCATCACCGGAACAAAAAATTATATACACCTCATTG consensus: ** * ******* * * ** * ***** ** ** * ************ *** ** ** ** * ** ***** ** ** ** ******** * ** ** ***** ** 1320~1440: Scer.....: AACCCAGGAACTACGCTGGCTCACGAGTCGATCATCCCTATCCAAATATTTCCAGATATCTTTGACATAAAATCCAGAGTGGGTGAAGTGGAACAAAATAATAGAGTTTTGGATGTGCCT Spar.....: AACCCAGGAACTGCGCTGGCTCACGAGTCGATCATCCCTGTCGAAATATTCCCAGATATCTTTGATATAAAATCCAGGGTGGGGGAAGTGGAACAAAATGATAGAGTTTTGGATGTCCCC Smik.....: AACCCTGGTACTACATTGGTTCATGAGTCGATTATACCTATCGAAATATTCCCAAGCATTTTTGACATTAAATCTAGAATGGGGGAAGTGGAAAAGAATAACAGAGTGTTGGATGTGCCT Sbay.....: AACCCAGGAACTGCCCTGGCTCACGAGTCAATCATCCCCATTGAAATCTTCCCAGACATTTTTGACATGAAATCCAGAGCTGGGGAAGTGGAACAGAATAACAGGGTGTTGGATGTTCCT consensus: ***** ** *** * *** *** ***** ** ** ** * **** ** *** ** ***** ** ***** ** ** ********* * *** * ** ** ******** ** 1440~1560: Scer.....: CGTCTGTCGTTTAATGACTATACTCCACGATTTTCAGAGCCACCTTCGGAGTATGTCTCAATATTTGATTCACAATTAATTGAGAATAACAGAGGTTTATTACAGCTGATTTTCACAATT Spar.....: CGTCTATCGTTCAATGACTACGCTCCACGGTTTTCAGAGCCTCCTTCGGAATATGTCTCAATATTTGACTCAGAATTGATTGAGGACAATAGAGGTTTATTACAGCTGATTTTCACAACA Smik.....: CGTCTACCATTCAATGACTATACTCCGCGGTTCTCAGAACCACCTTCGGAATATGTTTCAGTCTTTGACTCACACTTGATTGAAGATAACAGGGTCTTATTACAGCTGATTTTCACGATC Sbay.....: CCACTATCGTTCAATGATTACGCTCCACGGTTCTCGGAGCCTCCTTCTAAATATATTTCGATTTTTGACTCGGAATTGATCCAGGACAATAGAGTCCTATTACAACTCATCTTGACATCT consensus: * ** * ** ***** ** **** ** ** ** ** ** ***** * *** * ** * ***** ** * ** ** * * ** ** * ******* ** ** ** ** Scer_spli: DDDDDD 1560~1680: Scer.....: TTGGTTGGGTATATTCTTATTCAGTTTTTTTTCACA---AAAAAAACTATTGTAGATGAGAAGATTACTAATAAAAAGGACAACGTGAAACAGACGTCACCACAACTGCTCAAAAAAGTG Spar.....: TTGGTTGGGTTCGTTCTTTTTCAGTTCTTTTTCAGA---AAAAAAACCATTGTAGATACGAAGGCC---------AATGACAACATGAGACAGACGTCACCACAACAGTCGCAAGAACGA Smik.....: TTAGTTGGATTCGTTCTGCTTCACCTCTTTTTTACAGGTAAAGGGAATATTGTTGATAGGAAGGCCAAAAATCAAAACCACAACATAAGGCAGAAATCACAAC------CGCAAAAACGA Sbay.....: TTGATCGGATTCGTCCTCTTTCAACTCTTTGCCCCAAAGAAAAGGGATGATGCGGCTACCAAGACT---------AACACAAAGAAGAAGGGAAATTCTTCAC---CGCCACCAAAGAAA consensus: ** * ** * * ** **** * *** * *** ** * * *** ** ** * * ** ** * * Scer_spli: BBBBBBB Spar_spli: DDDDDD Sbay_spli: BBBBBBBBBBBBBBBB 1680~1800: Scer.....: CAAGAGATCCAGAAAAAGCCATCCCAGCAAGTATCTTGAttatggttcg-ttatatacatcgat--tctttgcaaaattatccatgagagacttcgcgccatgctacaattt---accaa Spar.....: CAAGAGACCGAAAAAACTTCATCCGAGTAAttgtcttgagcataatttg-ttatatgcatcgat--tcttggcaaaattatccattagaaatttcgcgccatgctacaattt---accaa Smik.....: CAAGAGGCTCAGAAAACGCCTTCTAAATAAatgt-taaactatggttcgcccgtataagccgattatatcggggacactagaagttagagttttcgcg-catcttataagtcataatcaa Sbay.....: CAAGAGGCCAAAAAAGTGGTCTCTGAGTAGctgctatgaacagagtta--ccgaatgcattgattccactaacaaaatcggcaattagagatttcgcgctaccatttttata---gctag consensus: ****** * *** ** * * * * * ** ** *** * * * *** ****** * * * * Scer_spli: DDDDDDD Sbay_spli: BBBBBBB 1800~1920: Scer.....: tgcgcatcgagaaattt-atgctatcgcatttaa-tatgatataa----------ttatccgtctgtttatatatatatatatatggggccaaactgaaaggcggcagttacattacatc Spar.....: tgcgcatcaaggaattt-atgctagcgtatataagtatgatataagtctgcatatatatatatatatatatatatgtatatatatgaaggcaaactgaaaagtggcagttgacttacatt Smik.....: tgcgcatcgaggaaatt-atgatagcgtacata-----------------------------------catatacatatatatatataagcaaagtgaagagtaacaattgagttgcgtc Sbay.....: tgcgcatcaatgaagttgatgctaatatacatacatagg-----------------------------cgtataaatatacatatagaacccaactgaaaggtagcaatttcgggccagt consensus: ******** * ** ** *** ** * ** **** **** **** * ** **** * ** ** * Spar_spli: DDDDDD 1920~1937: Scer.....: gtctcctctacctagtc Spar.....: ttct-ctccacctagtc Smik.....: ttttactccattcaagt Sbay.....: t---------------- { alias......: ['EPT1'] chromosome.: 8 description: sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase end........: 356083 exons......: [(1, 50), (142, 1267)] gene.......: EPT1 introns....: [(51, 141)] length.....: 1267 name.......: YHR123W plength....: 422 start......: 354817 tdist......: 206556 type.......: ORF up.........: 1 } Scer: 4 donors and 2 branches Spar: 4 donors and 2 branches Smik: 2 donors and 2 branches Sbay: 4 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 591), ('Spar', 591), ('Smik', 591), ('Sbay', 591)] ->[('Scer', 1147), ('Spar', 1147), ('Smik', 1147)] ->[('Scer', 2085), ('Spar', 2085), ('Sbay', 2085)] ->[('Sbay', 321)] ->[('Sbay', 887)] ->[('Scer', 334)] ->[('Spar', 68)] ] [ ->[('Scer', 646), ('Spar', 646), ('Smik', 647), ('Sbay', 647)] ->[('Scer', 2263), ('Spar', 2263)] ->[('Smik', 823)] ] 0~120: Scer.....: acgggga--ttcttctttttgcttcccttactcacgaagctatcaaaaaacatgtaaattt---aacaatgtgctctcactgtataacacagctatagctacattttattatatagtatt Spar.....: acgaggaattttttctttctccttccctctctcacgaacctatcaataa-tgtgtgaattt--tgagagtgagttcccactctacaatactgccaaagtcacatttt--tatatagtatt Smik.....: atgagaaa-ttatagcctttttttctcttatatacgaatcagttgatac-catctaaattt--tgactttaggttttcaatctacaacacttataaagttatggctt-ttatgtagtatt Sbay.....: acgaaggcttttttatgtccccttcccttattcaaggatttgtgactta-aacgtagtttcagtgtaggtgcgttttcaccttggaccccttttatgtttgtatatg-ttatatattatt consensus: * * ** * * *** ** * * * * * ** * * * ** * * * * * *** ** **** Spar_spli: DDDDDD 120~240: Scer.....: ttctccaatcgattaaataa------cggtttttacaatggtttggttcctgtatcttgtttattttg--ttcaaatggcaaaatacagaacacaggtataactttctttgt-cttcttc Spar.....: ttca--aattgattagataa------tggtttttacaagggtttggttgctgtatcttacttttttttctttcagataacaaaatacagaacatgggtatatctttttttgc-ctccttc Smik.....: ttca--aatcgaatatttaa------cgttttttcagaaaggctggttgctatttttcatttaattc---tccaagcgactagtt------------cacagtttactttgc-ctctttt Sbay.....: cctct-aatcaaatacataagaaacattgtttttacgaaagttggctctttcttcatctccttactccatttatattggttgcata-----------tatatcttttgttgcattttttc consensus: *** * ** *** ***** * * * * * * * * * * * * * ** *** * ** 240~360: Scer.....: atcaaagagtat-----cgca-tatcaaac-ctttatgtacattaacga------------------actctcgacctatagtagcctcctggcgttcgttcagtgttattctta----- Spar.....: atccatgaacat-----tggaatattaaat-atatatatacgttaatggcattcctgcttttaaaatactctctacctatagtagcgctctagcgtttgttcagtattattctta----- Smik.....: gttggggtaaat-----taaaattttaaactctttgaatacgtcaaggtcactctttgctttaaaacaccttcg---tgtggcagtattatagtgtttgccctatatcattcttagtttt Sbay.....: agcagagaactcacctgtggaattctaatc-ttccgtgtaagacattggtgctctctgttttacggctgcttctgatcacagta-tgttgtagcgt--------tgtccttctta----- consensus: * * * ** * ** * * ** * * * * ** * * ****** Scer_spli: DDDDDD Sbay_spli: DDDDDDD 360~480: Scer.....: -cgattggtctca--cttttcataaaatttcacaagcttccatatttacgcgaggaattgtgcgaaagggctggactgagcatacgtatatttgtcgagaaattacgttgtggctaagaa Spar.....: -cagatggttacagacttttcataaaatttcacaagctttcatatttacgcgaggaagtgtgcgaa-----tgggctgggcatacgcatatttgtcgagaaattacgttgtgcttaagaa Smik.....: acaaatggccttat-ttttatgaaatatttcacaagctgtcatattgacgcgaggatgtgcgcgaa-----ctggctgggcatacgtatatttgtcgagaaattacattgtgaatgagag Sbay.....: -taagtgtgctta--cttttcatga-atttcacaagccattgcatt-acgcgagaa----------------ggattcagcatacgcatatttgtcgagaaaatgctgtgtatttaagaa consensus: ** * *** * *********** *** ******* * * * ******* *************** * * *** * *** 480~600: total....: ====== Scer.....: tacaatggcatcgtagtaggaattagaagtgtagaataagaaaaacaagctaaggtataaaATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTAAAGTCATATAAGTATGTGAA Spar.....: cacaatagcatcatagtggagaatagaagtgctgaagaagaaaa-caagctaggatataaaatgggatattttgttcctgattcacatattgaaaatctaaagtcatacaagtatgtgaa Smik.....: agcatcaagatagtactaccaa-taaaagtgttgaa-aacagaaacaagttaggatataaaatgggatactttgttcctgattcacacattgaaaatctaaagtcatataagtatgtaaa Sbay.....: cataaggtgagagcaatcgtaaacgaaagtactgaa-aagaacacaagctcggagtagaaaatggggtattttgttcctgactcatctattgaaaatctaaaatcatacaagtatgtgaa consensus: * * * * * **** *** ** * * * ** ******** ** ******** ** *** ** *********** ***** ******** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >======== 600~720: total....: ======= Scer.....: GCGTCCATTGGCTGCCTTTAAAGTGCAGAAGTCAGAAGCATT--GT-TACTAACTTTCAACAATTTTT-ATTCCTTTTCATGATAGATATCAAAGTGAAGACCGCTCGCTGGTATCGAAG Spar.....: gcgtccattggctgcccttagaacacagaaatcaaaagcatt--gt-tactaaccttcaacaattttt-atttcctttcgtaatagataccaaagtgaagatcgctcgctggtgtcgaaa Smik.....: gcgcccaatggttgcattggtaggcagggagcaaagaactca--atatactaaccttcaacaattttt-gttttctctcacaacagataccaaagtgaagatcgctcgctggtgtcaaag Sbay.....: tatagcgttttttgcctt-aaattgggggaaccgaaatctctaagtatactaaccttcaacaattttttattttctttcataacaggtaccaaagtgaagatcgttcgctggtatcaaaa consensus: * * *** * * * * * * * ******* ************* ** * ** * ** ** *********** ** ******** ** ** Scer_spli: BBBBBBBB Spar_spli: BBBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ====================================================================================>= 720~840: Scer.....: TATTTCTTAAAGCCATTTTGGCAAAGATTTTGTCACATATTTCCCACGTGGATGGCGCCCAACATCATCACATTATCAGGATTTGCTTTTATAGTTATCAACGTGTTGACTGTATTCTAT Spar.....: tatttcttaaagccattttggcaaagattttgtaccatttttcccacgtggATGGCACCCAACATCATCACATTATCAGGATTTGCGTTTATTGTTATCAATGTGTTGACTGTATTCTAT Smik.....: tattttttgaagccgttttggcaaagattttgtaccatttttcccacgtggATGGCGCCTAATATCATTACATTATCAGGATTTGCATTTATTGTTACAAATGTGCTAACCGTGTTCTTT Sbay.....: tacttcttaaaaccattttggcaaaaattctgtaccattttccccacgtggATGGCACCTAATGTCGTTACATTAACCGGGTTCGCTTTCATTCTTATTAATGTGCTGACCGTATTCTAT consensus: ** ** ** ** ** ********** *** *** *** ** ************** ** ** ** * ****** * ** ** ** ** ** *** ** *** * ** ** **** * Smik_spli: BBBBBBB 840~960: Scer.....: TACGATCCAAACCTTAACACAGATACGCCTCGCTGGACATATTTTTCTTACGCTTTAGGTGTATTCCTATATCAAACGTTCGATGGATGTGATGGTGTACACGCTCGCCGTATCAATCAA Spar.....: TACGATCCAAATCTTGACATAGATACCCCTCGCTGGACGTATTTTTCTTACGCCTTGGGTGTATTCCTGTATCAAACGTTCGATGGATGTGATGGTGTGCATGCCCGCCGTATTAATCAA Smik.....: TACGACCCAAATCTTAACACTGATACGCCACACTGGACATATTTTTCTTACGCTTTAGGTGTGTTTCTATATCAAACTTTTGATGGATGTGATGGTGTGCATGCCCGTCGTATTAATCAG Sbay.....: TATGATCCAAACCTAAACGCCGACTCGCCTCGCTGGACATGTTTTTCGTATGCCTTGGGAGTTTTCCTATATCAAACATTTGACGGTTGTGATGGTGTCCACGCTCGTCGTATAAATCAA consensus: ** ** ***** ** ** ** * ** * ****** * ****** ** ** ** ** ** ** ** ******** ** ** ** *********** ** ** ** ***** ***** Sbay_spli: DDDDDD 960~1080: Scer.....: TCAGGACCCTTAGGAGAACTATTCGATCATAGTATTGATGCCATTAATTCTACTCTGTCTATTTTCATCTTCGCATCCGAAACTGGAATGGGATTTTCGTATAACTTAATGTTATCCCAA Spar.....: TCAGGACCCTTGGGAGAACTATTTGATCATAGTATTGATGCCATCAATTCCACCCTGTCTATTTTCATCTTTGCCTCAGAAACTGGAATGGGATTTTCGTATAGCCTAATGTTATCCCAG Smik.....: TCAGGACCATTGGGAGAGCTTTTCGACCATAGCATTGATGCTATCAACTCTACTCTTTCCATTTTTATTTTTGCTTCTGAGACTGGGATGGGATTCTCATATAGTCTAATGTTGTCCCAG Sbay.....: TCAGGACCATTGGGAGAATTGTTTGATCATAGTATTGATGCTATAAACTCTACTCTGTCAATTTTTATCTTTGCTTCGGTAACTGGAATGGGGTTTTCCTATAGGCTAATGTTGTCCCAG consensus: ******** ** ***** * ** ** ***** ******** ** ** ** ** ** ** ***** ** ** ** ** * ***** ***** ** ** **** ******* ***** 1080~1200: Scer.....: TTTGCGATGCTGACGAATTTTTACTTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGATA Spar.....: TTTGCAATGTTAACGAATTTCTATTTAAGTACTTGGGAAGAATACCATACACACACATTATACTTAAGTGAGTTCTCTGGGCCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTAATA Smik.....: TTTGCAATGCTGACGAATTTTTACTTGAGTACTTGGGAAGAATATCATACACACACATTATATTTAAGTGAGTTCTCTGGACCCGTCGAAGGAATTTTGATTGTCTGTGTTACGCTAATA Sbay.....: TTTGCGATGCTGACAAATTTCTACCTGAGCACCTGGGAAGAATACCACACACACACATTATACTTGAGTGAATTTTCTGGGCCCGTGGAGGGCATTCTGATCGTTTGTGTTGTGTTTGTA consensus: ***** *** * ** ***** ** * ** ** ******** ** ** ************** ** ***** ** ***** ***** ** ** ** **** ** ** *** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 1200~1320: Scer.....: CTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGT Spar.....: CTGACTGGGATATACGGAAAACAAGTAATCTGGCATACCTACTTGTTTACAATTACGGTTGGCGATAACATCATTGATGTAGACACTTTAGATATTGTTTTCTCCTTAGCTGTCTTTGGT Smik.....: TTGACGGGTATATATGGAAAACAAGTAATCTGGCATACCTATTTGTTTACCATTAGAATTGGTGATAAAGTAATTGATGTGGACACTTTGGATGTTGTGTTCTCCTTAGCTGTCTTTGGT Sbay.....: TTGACTGGCATATACGGAAAGCAGACCATTTGGCATACTTACTTGTTCACGATTACGGTTGGCGATAAGGTCATTGATGTGGACACTCTGGATGTTGTGTTCTCCTTATCTGTCTTCGGT consensus: **** ** ***** ***** ** ** ******** ** ** ** ** **** **** ***** * ******** ****** * *** **** ** *** ** **** ** *** 1320~1440: Scer.....: TTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCC Spar.....: TTGGTTATGAATGCATTGTCTGCGAAAAGAAACGTGGATAAATATTATAGAAATAGTACTTCTTCAGCTAACAACAGCACGCAAATTGAGCAAGACAGCGCTATAAAAGGTCTTTTGCCT Smik.....: TTAGTTATGAATGCATTATCTGCGAAAAGGAATGTGGATAAGTATTACAGAAATAGCACCTCTTCGGCCAATAATATTGCTCAAATTGAACAAAATAGCGCTATAAAAGGTCTTTTGCCG Sbay.....: TTGGTATTGAACGCTTTATCTGCAAAAAGAAACGTGGATAAATATTATAGAAATAGTACTTCCTCGACCAACAATATGACACAAATCGAGCAAGGAAGTGCTATAAAAGGTCTTTTGCCA consensus: ** ** **** ** ** ***** ***** ** ******** ***** ***** ** ** ** ** * ** ** * * ***** ** *** ** ******************** 1440~1560: Scer.....: TTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTT Spar.....: TTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATGCAACCAAACTTTATTACACTCGCTTTTATCCTATCCATTGGCTTCACAGGTGCATTTACCGTCGGAAGAATAATCGTT Smik.....: TTCTTTGCGTATTACGCAAGTATCGCTTTACTGGTGTGGATGCAACCGAGTTTTATTTCTCTTGCTTTTATCCTTTCCATCGGCTTCACAGGAGCATTTACGGTCGGAAGAATAATTGTT Sbay.....: TTTTTTGCCTATTTTGCAAGCATTGCTTTACTAGTGTGGATGCAGCCACGTTTTATTACACTTGCTTTTATCCTATCTATCGGTTTCACAGGAGCATTCACCGTCGGAAGGATCATTGTC consensus: ** ***** **** ***** ** ******** *********** ** ****** * ** **** ***** ** * ** ***** ** ***** ** ******** ** ** ** 1560~1680: Scer.....: TGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTC Spar.....: TGCCATTTAACTAAGCAGAGTTTTCCCATGTTCAATGCCCCTATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAGATATGTCAAGCCGTTTGGGGAATTGAGTCTAGTACAATCGTG Smik.....: TGCCATCTGACTAAGCAGAGTTTTCCTATGTTCAATGCACCTATGTTGATTCCTTTGTGCCAGATGGTTTTGTACAAGATATGTCAAAATGTTTGGAGAATTGAACCTGATAAAATTGTG Sbay.....: TGTCATTTAACTAAGCAGGATTTCCCTATGTTCAATGCGCCAATGCTAATTCCCTTGTGCCAGTTAGTTCTGTACAAGATATGCCAGGTTGCTTGGGGAATTGAAGTTGACAGAATTGTC consensus: ** *** * ********* ** ** *********** ** *** * ***** ********* * ** ******* ***** * **** ******* * * *** ** 1680~1800: Scer.....: TTTGCCCTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCACATTATGTTTATGAATGACATTATCCATGAATTTACTGAGTACCTGGACGTTTATGCTTTATCCATCAAGCGCTCC Spar.....: TTTGCCTTATCTTGGCTTGGGTTCGGTCTCTCACTAGGTGTTCATATTATGTTTATGAATGACATTATTCATGAATTTACTGAGTATCTCGATGTTTATGCTTTATCCATCAAGCGCTCC Smik.....: TTTGCTCTGTCTTGGCTCGGCTTTGGCCTCTCCCTTGGCGTTCATATCATGTTCATGAATGACATTATTCATGAATTTACTAAGTTTCTAGATGTTTACGCTTTATCCATTAAACGCTCC Sbay.....: TATGCCTTATCTTGGCTTGGGTTTGGTCTTTCATTGGGCGTTCATATCATGTTTATGAATGAAATCATTCATGAATTTACCGAATACCTGGATGTTTACGCTTTGTCCATCAAGCACTCC consensus: * *** * ******** ** ** ** ** ** * ** ***** ** ***** ******** ** ** *********** * * ** ** ***** ***** ***** ** * **** 1800~1920: Scer.....: AAGCTGACATAAa--tcgcactttgtatctacttttt---tttattc-------------gaaaacaaggcacaacaatgaatctatcgccctgtgagattttcaatctcaagtttgtgt Spar.....: AAGTTAACATAAa--tcttatttcgtatccacctttt---ccttttccttttccttttc-gaaaatcaggcacaa--atcactccatttccctgtgagattgtcaatatcaagtttgtgt Smik.....: AAGTTAACTTAAaaatcatgtttgttgtttacgcttc---tctcttttttttc---tta-ttaaacaaggtacaa--agcactctattgctccgtgagattatcaatctcaactttgtgt Sbay.....: AAGCTAACATAAaa-ccgcactttgttcacacgttttctgtttgtttgtcttccctttatttaaataaaacccaa--ttttctctattgccctgcgggacaaccggtctctagtctgtgt consensus: *** * ** **** * ** * ** ** * ** *** * *** ** ** * * * * ** * * ** * * ***** 1920~2040: Scer.....: aatagatagcgttatattatagaactataaaggtccttgaatatacatagtg-tttcattcctattactgtatatgtgactttacattgttacttccgcggctatttgacgttttctgct Spar.....: aatagatagcggtatattatagaattatagaatcatttgattgtacatagtt-tttcgttcctattacagtatacttg-cttgacattgtcacttccgcggctatttgacgttttttggt Smik.....: aatagataccgttatattatagagttatagaatccgttcgatgtacatagtg-cttcattgctgttgcagtatatgtagtttcacattgtaacttccgcggctatttgacgtttttttgt Sbay.....: aatagataacattatattatagaatgatagaaactatc-gatatgcatagtgcttttatcgctgtcgagatatatctggcctcaccttatcacttccgcggctatttgacgttttttg-t consensus: ******** * *********** *** * * * * ****** ** * ** * **** * * ** ** * ************************ * * 2040~2160: Scer.....: tcaggtgcggcttggagggcaaagtgtcagaaaatcggccaggccgtatgacacaaaagagtagaaaacgagatctcaaata---tctcgaggcctgtcctctatacaaccgcccagctc Spar.....: tcaggtgcggcttggagggcaa-gtgtcagaaaatcggccaggccgtatgacacaaaagagtagaaaccgagatctcaaagg---tctcgaggcctatcttctacccaaccgcccagctc Smik.....: ccag-tgcggcttaaaggccaaagtgtcagaaaatcggccatgccgaatgacacaaaagagtggcaaccgatatctcaaggt---tctcgaggtctattctattctgaaccgcccagctt Sbay.....: tcaagcgcggcttggacggcaaagtgtcagaaattcgcccaggctgtatgacacaaaagggcaaaaa--gagatctcaaaagccctctcgagacaagtctcttgctgaaccgccgagctc consensus: ** ******* * * *** ********** *** *** ** * ************ * ** ** ******* ******* * * ******* **** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 2160~2280: Scer.....: tctgacaaagctccagaacggttgtcttttgtttcgaaaagccaaggtcccttataattgccctccattttgtgtcacctatttaagcaaaaaattgaaagtttactaacctttcattaa Spar.....: tctgataaagctccagaacggttgtcctttgtgtcgaagagctaagatcccttatagttgcgctccattttgtgtcacctatttaagcaaaaaattgaaagtttactaacctttcattaa Smik.....: tctaaaaaaggtcaccaacagttgtcttttgtgttgacgagccaaggtctgttataactgtccgccgttttgtgtcac-tattaaaacaaaaaat-aaaagcttagtatactttcattaa Sbay.....: tctgcaaactctattggacaatcatcttttgtgttgaagaggtaacctccgttacagttgtcccccattttgtgtcatctactaaagtagaaatt-aaaagtttaataaacattcaataa consensus: *** ** * ** * ** ***** * ** ** ** ** *** * ** * ** ********** ** * ** * *** * **** *** ** * **** *** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2280~2315: Scer.....: agagaaataacaatattataaaaa-gcgcttaaa- Spar.....: agagaaataacagtaatataaaaa-gcgcttaaa- Smik.....: agagga-caacagtaatattaaaa-gcgcttaaaa Sbay.....: agagggaaaacggtaatataaaaaagcacttaaa- consensus: **** *** ** *** **** ** ****** { alias......: ['RPL42B'] chromosome.: 8 description: Ribosomal protein L42B (YL27) (L41B) (YP44) end........: 382752 exons......: [(1, 4), (446, 762)] gene.......: RPL42B introns....: [(5, 445)] length.....: 762 name.......: YHR141C plength....: 254 start......: 381991 tdist......: 179887 type.......: ORF up.........: 0 } Scer: 5 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 105)] ->[('Scer', 143)] ->[('Scer', 533)] ->[('Scer', 790)] ->[('Scer', 1769)] ] [ ->[('Scer', 22)] ->[('Scer', 1179)] ->[('Scer', 1471)] ] 0~120: Scer.....: attatatatatatcagcttttgtattaacaaaaccacaatttttgataatagttttgatgaaataaactttccacgtggagacagctttgaaaaaacagttcaaagtatgccagtgtagc consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDDDD 120~240: Scer.....: tttgactttttttaatctttttagttaagttatgcaatatgctatttttataccaaaatggatcctttttgatttcgtgtcttgtgaaactttttcaatatttaaccgttttaagaaagc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: gaagcgggcaacaccagaagaatgtcaataacttactgtaacaacataaaacatggcattttaaatagtactgccaaaatttaatgcaatggcaattagttggctatgttgctacatatt consensus: ************************************************************************************************************************ 360~480: Scer.....: attttccatagcattctctgtcacaaacttcaaaataaaagacagtgacatccgaacatccgatacacccatacatcatgaaaataaatcctgacattggaagaagtcttgatacaaaaa consensus: ************************************************************************************************************************ 480~600: Scer.....: aagatcgctgtcaaaaatgcggccagactgccgctgcatcgtaccaacagtgcgtatgttcagacggagagacgacctctagagagacgtccgtcggtgcggcaacgctgacggtttagt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 600~720: Scer.....: tgttcgacgggatgatgggttccgccagggggagggaaggctttccaccaagagaggtaaaattattcgtcgaaatgaactcagagatacatccatattgttgacaatgtatatcttaat consensus: ************************************************************************************************************************ 720~840: Scer.....: tgatgtggtattttcactgttttaacgtaaattgaaggagattaagcaaaaaaacaatcagtaataATGGGTATGTGGACGATTAGGAATAGACAAACCATGTTATTTATCTCCATTAGG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >================================================= 840~960: Scer.....: GCGTGAGAGTGTAATTAGTACACAGGTACTACTAGAATGCTAAAGAACTTTTTAAAATATCCTGAATCGTAGGGCAAATCCATGTCAAGCAAGAAACTAATAGTTATTAAACTTCATTTA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: CTTTTGAGCTAGTTAAATATTTTCATCATTTCCTAAAGTACTGAACACCTGAATGATACTTTTATTGGCCCTTTTAATAAGAACTCTGGTTAGAAAATATATTGAGGATATCATTAGTAA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1080~1200: Scer.....: TACTCATTAGATATTTGTGAATTTAGCCGTTTCCCCATTACAGAAAAAAGATACAACTAATTACATGTGCAGTCAAATTACTTTTTTTTTAAGATCAATTACTAACAATCAACTATCATG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 1200~1320: Scer.....: CTAAATTTGCTGTGATATCATTTTGAACCAGTTAACGTCCCAAAGACCAGAAAGACCTACTGTAAGGGTAAGACCTGTCGTAAGCACACTCAACACAAGGTTACTCAATACAAAGCTGGT consensus: ************************************************************************************************************************ known....: =============================>= 1320~1440: Scer.....: AAGGCTTCCTTGTTCGCTCAAGGTAAGAGACGTTATGACCGTAAACAATCTGGTTTCGGTGGTCAAACCAAGCCTGTTTTCCACAAGAAAGCTAAGACTACCAAGAAGGTTGTTTTGAGA consensus: ************************************************************************************************************************ 1440~1560: Scer.....: TTGGAATGTGTCAAATGTAAGACTAGAGCCCAATTAACCTTGAAGAGATGTAAGCACTTCGAATTGGGTGGTGAAAAGAAGCAAAAGGGTCAAGCTTTGCAATTCTGAgagttgttattg consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1560~1680: Scer.....: tttattgttttattatatttttatagttatactttgaccattaactttttgtaaattttgcatacttaactctttaatattgaaaacctgcctatttggcgtaatttttcatcctgcctt consensus: ************************************************************************************************************************ 1680~1800: Scer.....: tgaacctgttgtaaacgttcgcgttggcaaccatgataagttaacaagacacgtaggcgttcgcactaaaacacagcattgctactaaagtacgttactaagaaccagtaaaaataaata consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1800~1920: Scer.....: tgtataaataaaatgtagatacagctgattcccaatatctcatttcagaaatgatcaacaccaggcgcccagcaacgttcaatctatctacgcttcagtactactaaaagtgggaaaaac consensus: ************************************************************************************************************************ 1920~2040: Scer.....: gtgggcttttagtcattccctgcaattttaagaaaactgcatatactagtagtacattcgcgatataattatgatgttggcctttttaaaacaaaaaccaaaaggaatttgattataaca consensus: ************************************************************************************************************************ 2040~2160: Scer.....: aaactaaagaggtgtggaaaattaatacaaaccttcgactttttatagtgcggttcctacactttttttttttcccgcttaccctggtgattgattttttgggttccgttgtagggctag consensus: ************************************************************************************************************************ 2160~2246: Scer.....: cacgaaaataagaattaagtagcaaaatttgagatttgctcactttacatacaaagagcttaaatagtagtatactagtagtaatg consensus: ************************************************************************************** { alias......: ['RPS4B'] chromosome.: 8 description: Ribosomal protein S4B (YS6) (rp5) (S7B) end........: 505526 exons......: [(1, 14), (284, 1055)] gene.......: RPS4B introns....: [(15, 283)] length.....: 1055 name.......: YHR203C plength....: 351 start......: 504472 tdist......: 57113 type.......: ORF up.........: 0 } Scer: 7 donors and 3 branches Spar: 4 donors and 3 branches Smik: 5 donors and 1 branches Sbay: 4 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 880), ('Spar', 880), ('Smik', 880), ('Sbay', 880)] ->[('Scer', 1311), ('Spar', 1311), ('Smik', 1311), ('Sbay', 1311)] ->[('Scer', 1685), ('Spar', 1685), ('Smik', 1685)] ->[('Scer', 1076), ('Smik', 1076)] ->[('Scer', 2023), ('Spar', 2023)] ->[('Sbay', 328)] ->[('Sbay', 2212)] ->[('Scer', 439)] ->[('Scer', 1120)] ->[('Smik', 2196)] ] [ ->[('Scer', 1109), ('Spar', 1109), ('Smik', 1109), ('Sbay', 1109)] ->[('Scer', 199), ('Spar', 199)] ->[('Sbay', 189)] ->[('Scer', 242)] ->[('Spar', 789)] ] 0~120: Scer.....: tctatttccctgaatg-taaccaatccatggaaatatgaaattatcatggttactcttgacccattaatacatat----tcaaaaacgcgtccttctttattgcttatta-ttaatagtc Spar.....: tctatttcctcaaacgttgagcaattcatggaaatacgaccttaacatggttactcttgatccattaacatacatctcatcaaaaacgcgtcctgctttattgcttattatttaatagtc Smik.....: tctatttcctcgaacg-taatcgattcatggaattgtgaacttgtcattgttgctcttgattcatttacattcacgccatcaaaaacgcgtccttctctactgcttaaca-ttaatagtt Sbay.....: --------cctaaag--aagccagttcatgggaatgcaaactcatttttactgttcttgatccatgaacacacgt--catcaaaaacgcgtccttccttatggcttacca-ctaatagtt consensus: * ** * * ***** * * * * * * ****** *** * * *************** * ** ***** * ******* 120~240: Scer.....: gctgaaacacgcc-agaaataaatcgttacccgtcgttaaagcacaacggaaacctatcagt----ctataccaaat-gtactaatagtgtaa---ccatggtgagatagagtcgccagt Spar.....: gctgaaacatgcc-attaagaagtggttacccgtcttcaaaacacagcggaggcc-ataagt----ctataacaaat-gtactaatagtgtaa---ctatgctgaggtaggatggttagt Smik.....: aataaaacatgcc-catcgccgacaattacccgtcttcgcgacacagctaaggtctaaaaga----ctttagcaaat-gaatcaatcttgcaa---ctgtgttaaaatagtataaacggt Sbay.....: gccaagacaagccaaattataggccgttacccgccctcacaacactatagagaaccaaagttggccttgtactaattcgcaactatctcgccagtcctgagctggtatagcattatctta consensus: * *** *** ******* * * *** * * * * ** ** * * * ** * * * * * *** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 240~360: Scer.....: gaaactaacattgagcagtgcttgcttttcagcctgttttatggttat-----------tctctttaa--acaattattttcgagacaat-tatgcatccatacattt-cacccagacat Spar.....: atatccaacaatggactgtgtttactcttcagcctctttggtggttat-----------tctctcata--atcattattttcgagacaac-tatacatccacacattt-cacccaaacat Smik.....: gaaagcaatattgtactgaatttatctttcaaactgttgtgtgggtat-----------tctcttctggcatcatcctttttgagactgt-tgtacatccacacatttccccccagacat Sbay.....: caggtctattgatatttgggccaacttctataaccaccttaaggtgatctctctctctctctctctctaaaaatatatcttcgagactgcatgtacatccacacattttcacccagacat consensus: * * * * ** ** ***** * * ** ***** * * ****** ****** * **** **** Scer_spli: BBBBBBB Sbay_spli: DDDDDD 360~480: Scer.....: tttgt-----gtg-cgcgttattgcgctt-ttt-------gcag-ggcgcatctcctttttttctattttttcaggctagtcagtgtcacacagcgtttttccgt-----caaggagatt Spar.....: gtttt-----gtgttgcgccatttttcttcttt-------gcagcggagtatctccttgtt---cgattcttcgcgctagtcta-gtagcgcagagttcctctgt----ccaaggagatc Smik.....: tctttttttagtgaaacataatcgccctc-ttt-------acaacgcgaaggccctttgc----cctctttttccgccgatca--gcaacacagcgtccctctgt--------------- Sbay.....: attttttccaaagttgtgtttttcttattttttcaccacgccaaaagagaggataccttttt--cctctttttccgccgggccc-ggaaca-agcgtttctcttctccgtctaggtggtc consensus: * * * * * *** ** * * ** ** * * * ** ** ** Scer_spli: DDDDDD 480~600: Scer.....: atcctaccgcgta-------------------attttctattgttcctgggctggtctttctagcattcctcgctggcgcttcactaatccagcgtagaatccagcttcgctcttgcttc Spar.....: atcccaccgcctg-------------------actt--tactgtccctgggctggcgtttccggaattcctcgctgg-gcttcaccaatccagcctggaatccaggcccgggcttgtttt Smik.....: ------ctgttt--------------------------ctttggttttggaccggcccttccagaattcctcactgaggtttcatctacccagcctggaacgtagccgggggcttgctta Sbay.....: ctcccaccctccatggaagtcgtcgtgggcctagcctcgttagtttccaggctgctctttccggaatttcccactag-gctccaccagacctgcctgggctccaggcaggaaattgttcc consensus: * * * * * *** * *** * * ** * * ** ** ** * * ** * *** * 600~720: Scer.....: gtcacctgccccgaatggt-gaggaaagttcctcttggtcttgggatttgccaaactaagtggttgtgt---gg--aggatccatgtggtttcgttagcgcaatggcatcgtatct-tcc Spar.....: gtcacctgcccagggtggtgggggagagctccacttggtc-tggaatttgccaaaccaataggttgtatggagg--aggatctgtaccgtttcgttagcgcaatggcatcgtatcc-tcc Smik.....: gagacctttccagagtggtggaggatagcttctcggagtcctggagtttgccaaaccaatggactgtgt---ga--gagacgtgtatcgtttggttagtgcaatggcaccgttctt-cac Sbay.....: gtttccggtccgatgcagtggtggaaagtttcacctaccctcggaattcgccaaaccaatgaatggattctgggccaggttccgtatggtttcgttagcgcaatggcatcgtgtctacac consensus: * ** ** ** * *** ** * * * * ** ** ******* ** * * * * * **** ***** ********* *** * 720~840: Scer.....: ttctctaggatttggagctgcttcaagtcgctttgttttatta-tcggtagagttaa-tagtagtgatattgtaagatttagaatagtttctttttcatataacgtcgactaagtataac Spar.....: ttctctgggacttggaggtgtttgaagttgctttattttactagttggttgaataag-taatagtaatttattaacttctagagttgtctc-ttttcagatttcgtcgactaagtataac Smik.....: ttctctgagagttggaggtctttgaagttggtttattccagtagttagttgagtagt-tcttactgattaactgagaatttgctgttttcaattttcgaattaggttgactaagtacagc Sbay.....: tcgtctaggacttgatggactttgaagttgcttcatttccttggtcaatagaataagttatttggaatttgaaaaaaatttgttattgtttccttcccaattacgtcgactaagtataac consensus: * *** ** *** * ** **** * ** ** * * * ** * * * ** * * * ** * ** ** ********* * * Spar_spli: BBBBBBB 840~960: total....: ====== Scer.....: aatagatacaccactattgaggaaagATGGCTAGAGGACCGTATGTTGATTTCCACCTAAAAAAATGAAGAGTTGGCAAAACAAGATAATAGTTTTCTTTGAAGATGGGTACCCTCTCAT Spar.....: aatagatacaccactattgagaaaagatggctagaggaccgtatgttaatttatagttgagaaaatgaagagttgccaggacaggataatagttttctttgaagatgagcaccccgtcat Smik.....: aatagatacatcactattgagaaaagatggctagaggaccgtatgttgatttatagctaaagaagtgcagagtcacca-gacaggat-atgagtttctttgaagatgagcaatgtttcat Sbay.....: aatagatacaccactattgagaaaagatggctagaggaccgtatgttgattttaaactagcggaatgcgatgttgcta-tacaggatatgagttttttatgaagatgagcacagttccat consensus: ********** ********** ************************* **** * * * ** ** * *** *** *** * ******** * * *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >=============================================================================== 960~1080: Scer.....: GAT--TGGTACAAGTGATTTGCACCAAAGTGACGATGCGGACTAAAGAAAGAATATA---AGAGTTGTGTTTATCTATCTGGAAGAT--AGAATTCTGATGAGAAACTTTATCCTTGTTA Spar.....: gat--cggtattag-gaactgcaccataatgataatacagaccaaagagagaatataaagagagttgtgttcacccgtcttgaaaat--------------aggagctttatccttgtta Smik.....: tgtgcctggaccatagattt-caccgttatgattatacgaaaaaatgatagtacattaatagaattgtgttcatccctgttaagaatagagaattttagtgggaaactttatccttgtta Sbay.....: gtt--gtgcgccagggattagt-ccattgtggttatatggaggaagaaaaattc------cagtctctgttaaagaagaagaagaa--------------gagaaactccatccgcatga consensus: * * * ** ** ** ** * ** * * * **** * * * * * ** **** * * Scer_spli: DDDD Smik_spli: DDDD known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: AGTAACAGATAAGCATTGCGGGATATTTTTACTAACAAGAGTACGTTT-----------AATAATGTTAATACGATTTTTCATATAGAAAGAAGCATCTAAAGAGATTAGCAGCTCCACA Spar.....: cgtaactgataagcattccggaatgattttactaacaacattacgttt-----------aatactattaatacaatttttcatacagaaagaagcatctaaagagattagcagctccaca Smik.....: agtaacagacaaaaactttaggatatttttactaacaagagtgcgttc-----------aatactattattacgatttttcattcagaaagaagcatctaaagagattagcagctccaca Sbay.....: agcaattgataagagttcaaag----ttttactaacaagtttccgtttaatattttcgaaatattattattacgattttccatacagaaagaagcatctaaagagattagcagctccaca consensus: * ** ** ** * ************ * **** **** * *** *** ***** *** *********************************** Scer_spli: DD BBBBBBB DDDDDD Spar_spli: BBBBBBB Smik_spli: DD BBBBBBB Sbay_spli: BBBBBBB known....: =====================================================================================>= 1200~1320: total....: ====== Scer.....: CCATTGGTTATTGGACAAGTTGTCCGGTTGTTACGCCCCAAGACCATCTGCTGGTCCACACAAATTGCGTGAATCCTTGCCATTGATTGTCTTTCTAAGAAACAGATTAAAGTATGCTTT Spar.....: ccattggttattggacaagttgtccggttgttacgccccaagaccatctgctggtccacacaaattgcgtgaatccttgccattgattgtcttcctaagaaacagattaaagtatgcttt Smik.....: ccattggttattggacaagttgtccggttgttacgccccaagaccatctgctggtccacacaaattgcgtgaatccttgccattgattgtctttctaagaaacagattaaagtatgcttt Sbay.....: ccattggttattggacaagttgtccggttgttacgccccaagaccatctgctggtccacacaaattgcgtgaatctttgccattgatcgttttcttaagaaacagattaaagtatgcttt consensus: *************************************************************************** *********** ** ** ************************* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1320~1440: Scer.....: GAACGGCCGTGAAGTCAAGGCTATCTTGATGCAACGTCACGTCAAAGTTGACGGTAAGGTTAGAACTGACACCACCTACCCAGCTGGTTTCATGGACGTCATCACTCTAGATGCCACCAA Spar.....: gaacggtcgtgaagtcaaggctatcttgATGCAACGTCACGTCAAAGTTGATGGTAAGGTTAGAACCGATACCACCTACCCAGCTGGTTTCATGGATGTCATCACTCTAGATGCCACCAA Smik.....: gaatggccgtgaagtcaaggctatcttgATGCAACGTCACGTCAAAGTTGATGGTAAGGTTAGAACCGACACTACCTACCCAGCTGGTTTCATGGATGTCATCACTCTTGATGCCACCAA Sbay.....: gaacggtcgtgaagtcaaggccatcttgATGCAACGTCACGTCAAAGTCGACGGTAAGGTCAGAACCGACACCACCTACCCAGCTGGTTTCATGGATGTCATCACTCTAGATGCCACCAA consensus: *** ** ************** ************************** ** ******** ***** ** ** *********************** *********** *********** 1440~1560: Scer.....: TGAAAACTTCAGATTGGTCTACGATGTCAAGGGTAGATTCGCTGTCCACCGTATCACCGATGAAGAAGCCTCTTACAAATTGGGTAAGGTCAAGAAGGTCCAATTAGGTAAGAAGGGTGT Spar.....: CGAAAACTTCAGATTGGTCTACGACGTCAAGGGTAGATTCGCTGTTCACCGTATTACCGATGAAGAAGCTTCTTACAAATTGGGTAAGGTTAAGAAGGTCCAATTGGGTAAGAAGGGTGT Smik.....: CGAAAACTTCAGATTGGTGTACGACGTCAAGGGTAGATTCGCTGTTCACCGTATTACCGATGAAGAAGCTTCCTACAAATTGGGTAAAGTTAAGAAGGTCCAATTAGGTAAGAAGGGTGT Sbay.....: CGAAAACTTCAGATTGGTCTACGACGTCAAGGGTAGATTCGCCGTCCACCGTATCACCGAAGAAGAAGCCTCTTACAAATTGGGTAAGGTCAAGAAGGTCCAATTAGGTAAGAAGGGTGT consensus: ***************** ***** ***************** ** ******** ***** ******** ** ************** ** ************** ************** 1560~1680: Scer.....: TCCATACGTTGTTACCCACGATGGTAGAACTATCAGATACCCAGACCCAAACATCAAGGTCAATGACACTGTTAAGATTGATTTGGCCTCTGGTAAGATTACTGATTTCATCAAGTTCGA Spar.....: TCCATACGTTGTTACCCACGATGGTAGAACTATCAGATACCCGGACCCAAACATCAAGGTCAATGACACTGTTAAGATCGATTTGGCCTCTGGTAAGATTACTGATTTCATCAAGTTCGA Smik.....: TCCATATGTTGTTACCCACGATGGTAGAACTATCAGATACCCAGACCCAAACATCAAGGTCAATGACACCGTCAAGATTGATTTGGCTTCTGGTAAGATCACCGATTTCATCAGTTTCGA Sbay.....: TCCATACGTTGTCACCCACGATGGTAGAACTCTAAGATACCCAGACCCAAACATCAAGGTCAATGACACCGTCAAGATCGATTTGGCCTCTGGTAAGATCACCGACTTCATCAAGTTCGA consensus: ****** ***** ****************** * ******** ************************** ** ***** ******** *********** ** ** ******* ***** 1680~1800: Scer.....: TGCCGGTAAGTTGGTTTACGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATCGTTCACAAGGAAAGACACGATGGTGGTTTCGATTTGGTTCACATCAAGGACTCCTTGGACAA Spar.....: TGCCGGTAAGTTAGTTTACGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATCGTTCACAAGGAAAGACACGATGGTGGTTTCGATTTAGTTCACATCAAGGACTCCTTGGACAA Smik.....: TGCCGGTAAGTTAGTTTACGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATTGTTCACAAGGAAAGACACGATGGTGGTTTCGATTTAGTTCACATCAAGGACTCCTTGGACAA Sbay.....: TGCTGGTAAGCTAGTTTACGTTACCGGTGGTCGTAACTTGGGTCGTATCGGTACCATTGTTCACAAGGAAAGACACGATGGTGGTTTCGACTTGGTTCACATCAAGGACTCCTTGGACAA consensus: *** ****** * *********** ***************************** ** ******************************** ** ************************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 1800~1920: Scer.....: CACTTTCGTCACTAGATTGAACAATGTCTTCGTCATTGGTGAACAAGGTAAGCCTTACATTTCTTTGCCAAAGGGTAAGGGTATCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAG Spar.....: CACTTTCGTCACTAGATTGAACAATGTCTTCGTCATTGGTGAACAAGGTAAGCCTTACATTTCTTTGCCAAAGGGTAAGGGTATCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAG Smik.....: CACTTTCGTCACTAGATTGAACAATGTTTTCGTCATTGGTGAACAAGGTAAGCCTTACATTTCTTTGCCAAAGGGTAAGGGTATTAAGTTGTCCATTGCTGAAGAACGTGACAGAAGAAG Sbay.....: CACTTTCGTCACCAGATTAAACAACGTTTTCGTCATTGGTGAACAAGGTAAGCCATACATCTCTTTGCCAAAGGGTAAGGGTATCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAG consensus: ************ ***** ***** ** ************************** ***** *********************** ******** ************************** 1920~2040: Scer.....: AGCTCAACAAGGTTTGTAAacattttaaatattgttatctgccctctc-------ttcgtc-ttttgtttaatataaataaattctaaatcaactatatatatgtatg--------tata Spar.....: AGCCCAACAAGGTTTGTAAacattttagatattgttatctgccctttc-------ttcgtc-ttttgtttaaaataaataaattctaaatcaactatatatatgtatgtatatatatata Smik.....: AGCTCAACAAGGTTTGTAGacattctagattttgttttctgccc--tc-------ttcgtc-ttttgtttaatatgaataaattctaaatcaactatatatatgtatatatatacatata Sbay.....: AGCCCAACAAGGTTTATAAacattttaacaaatgttatctacccctcctcttcctttcgtctttttgtttaatataaataaattctaaaccaacgttatatatata----------tttg consensus: *** *********** ** ***** ** **** *** *** * ****** ********** ** ************* **** ******* ** * * Scer_spli: DDDDDDDDDDDDDD Spar_spli: DDDDDD 2040~2160: Scer.....: catata----------catatacatatatcaattat-aaaaaaagtgacaagcattatacatacaatttttctttttttttcatgaaatgtgtaaccagtgtgcctcattagagacaggg Spar.....: catata----------catatacatatatcaattataaaaaaaagtgacaagcattatacatacattcattcttcttttttatgaaaatgtgtaactaatgcgcctca------aaagag Smik.....: tatatatatgtgtgtgtatatatatatatcaactat-aaaaaaagtgacaagcattatacatacagt--------gttttccttaaaatatgtagccagttgatctta------acagag Sbay.....: c-----------------tatatatataccaattat-aaaaaaagtgacaagca-tatacatacattcat---gtatttatggaaaaacttttgaccagtacgcctta------gtaaag consensus: **** ***** *** *** ***************** ********** * *** *** * * * * * ** * * * 2160~2249: Scer.....: acgagagagc-aaaggtgcaatttccgctgcaaatgaac--ttttttaaacgatgtgcat-aaataaataaaaaaaatggcagaatact Spar.....: acgagagaac-aagactgcaatttcgggtgcaaatgaac---ttttcaaatgatatgcat-aaataaataaaaaaca-ggttgaattct Smik.....: acaaaagaac-aaaa-----------actgcaaatggta--tgcattgagtggattaaaa-aagtgattct------------------ Sbay.....: acgaaagaactaaaactgcgatcgccgatgcaaaaaatgggctttttaagtagtatgcataaaataaataataatcactgagatctc-- consensus: ** * *** * ** ****** * * * * ** * * * Smik_spli: DDDDDDDD Sbay_spli: DDDDDD { alias......: [] chromosome.: 8 description: Hypothetical ORF end........: 559920 exons......: [(1, 602), (702, 1911)] gene.......: introns....: [(603, 701)] length.....: 1911 name.......: YHR218W plength....: 637 start......: 558010 tdist......: 2719 type.......: ORF up.........: 1 } Scer: 15 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 539), ('Scer', 530)] ->[('Scer', 587), ('Scer', 581)] ->[('Scer', 58)] ->[('Scer', 140)] ->[('Scer', 272)] ->[('Scer', 407)] ->[('Scer', 508)] ->[('Scer', 649)] ->[('Scer', 754)] ->[('Scer', 1529)] ->[('Scer', 1873)] ->[('Scer', 2648)] ->[('Scer', 3725)] ] [ ->[('Scer', 1647)] ->[('Scer', 2677)] ->[('Scer', 3500)] ] 0~120: Scer.....: atgttaaaatggcatcatcaatacagtattactgatgttatgttatttagtgctgtccgtatgtcctcctgttcttttttgggctacaatttaattgatggggtgttatgtttacgatat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: ttcaattatgttaatatttagtatgtttatatcttctcattaatgaatagttaatttttacgtttaggtgattttggtggtgatttttctataatattgaaataagtgtatataaattga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: gtggttagtatatggtgaaaaagtggtataacgtatgtattaagagcatttatacggtatttgggcccgccgaatgagatatagatattaaaatgtggataatgatgggctttatgggta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 360~480: Scer.....: aatggcacagggtatagaccgctgaggcaagtgccgttaatggtgatgtgagtgcacttagtactgatttagtgagagagatgggccatggattggagtgtgagagtagggtaacttgag consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 480~600: Scer.....: agtggtatatactgtagcatccgtgtgcgtatgccataggataattaaaggtgagtatggcatgtggtgaggtggtagtgatggtgatatagagtggtagggtaagtgtatgtgcattat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD DDDDDD DDDDDDDDDDDD 600~720: Scer.....: ttacgattatttgttaacgtttcaatatggagggtagaacaacagtacagtgagtaggacatggtggatggtagggtaatagcagggtaatggtagtggagttggatatgggtaattgga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: gggtaacggttatgatgggcggtggatggtagtagtaagtagagagatggatggtggttgggagtggtatggttgagtggggcagggtaacgagtggggaggtagggtaatgtgagggta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 840~960: Scer.....: ggttaagagacaggttagatagggtggtgtgtggtgtgtgggtgtggtgtggtgtgggtgtgggtgtggtgtgtgggtgtggtgtgtgtgggtgtgggtgtggtgtgggtgtgggtgtgt consensus: ************************************************************************************************************************ 960~1080: Scer.....: gtgggtgtgtgtgtgtgggtgtgtgtgggtgtgggtgtgggtgtgggtgtggtgtgtgtatatatatgtcactgtattgcatgctggatggtgttagacaaggccgtagggacatatagc consensus: ************************************************************************************************************************ 1080~1200: Scer.....: atctaggaagtaaccttgtacgaaaataggcaatatttcctgtttaggcgattgtgacgcagattttagtccaacgatctagcgtcaaggaatttttttatagtgggacattgcaccaag consensus: ************************************************************************************************************************ 1200~1320: Scer.....: gaagtaacttgatacgtcgtgggtgaatgggtctgttttcttattcggcggggtaatacatttttgggggaagtttgtctgtctgacgcgccatatgtaggtacgccaaaaagggctcct consensus: ************************************************************************************************************************ 1320~1440: Scer.....: ctacttcgaagcgcgaggtcgtatacctaataaggaaatgtaatttataactttttattatattggtcttttcgagagcggaacgtaggtccatgtttaaagtatccaagagaatatcca consensus: ************************************************************************************************************************ 1440~1560: Scer.....: cgaagcggctgagcaacgaacagaatcctggttctcctcgactaagcagatagttaagatactgtgcaccatggaaattgaaaacgaaagtacgtaccgactactttatttttgcaggcc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1560~1680: Scer.....: ggaaatcaagcgatgaatgagacatccttctgttttctatgttgtgcttgaaggggacagacagtcgcttatcttagtgagatttcttattaactgaattttctttgctgctgctggaga consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1680~1800: Scer.....: tttgcacctgcatagcgcagattctgcttcttctcaatagagtagcttaattattacattcttagatgatgataagacggaaactggacaatcttttgtttatattgatggatttcttgt consensus: ************************************************************************************************************************ 1800~1920: Scer.....: caaaaagcatagcaatcaacatactattgttaatttcgaaacttacaaaaataaaatgaaagtttccgatagcgtaagtttgaaaaagcaaactttgacgagtttgagtcggctctaaat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1920~2040: Scer.....: aacaaaaacgacttggtacattgtccctcaataactttatttgaatcgatccccacggaagtgcggtcattctacgaagacgaaaagtctggtctaatcaaagtggtaaaattcagaact consensus: ************************************************************************************************************************ 2040~2160: Scer.....: ggtgcaATGGATAGGAAAAGGTCTTTTGAAAAAATTGTCGTTTCCGTCATGGTCGGGAAAAATGTACAAAAGTTCCTGACGTTTGTTGAAGACGAACCAGATTTCCAGGGCGGACCAATC consensus: ************************************************************************************************************************ 2160~2280: Scer.....: CCTTCAAAGTATCTTATTCCCAAGAAAATCAACTTGATGGTCTACACGTTGTTTCAAGTGCATACTTTGAAATTCAATAGAAAGGATTACGATACCCTTTCTCTTTTTTACCTCAACAGA consensus: ************************************************************************************************************************ 2280~2400: Scer.....: GGATACTATAATGAGTTGAGTTTCCGTGTCCTGGAACGTTGTTACGAAATAGCGAGTGCCAGGCCGAACGACAGCTCTACGATGCGTACTTTCACTGACTTTGTTTCTGGCACACCTATT consensus: ************************************************************************************************************************ 2400~2520: Scer.....: GTAAGGAGTCTTCAGAAAAGCACCATAAGGAAATATGGATACAATTTGGCACCCTACATGTTCTTGTTACTACACGTAGATGAGCTATCGATTTTTTCTGCATACCAAGCAAGTTTACCT consensus: ************************************************************************************************************************ 2520~2640: Scer.....: GGCGAAAAGAAAGTCGACACAGAGCGGCTGAAGCGTGATCTATGCCCACGTAAACCCACTGAGATAAAGTACTTTTCACAGATATGTAACGATATGATGAACAAAAAGGACCGATTGGGT consensus: ************************************************************************************************************************ 2640~2760: Scer.....: GATGTTTTGCATGTGTGCTGCCCAAGTTGAGAAGAGATACTAACAAAATGACCGCGGCTCTCAAAAATAATTGACGAGCTTACGGTGATACGCTTACCGTTATCCAGAGCTACAGCGCAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >================================================================================================>= 2760~2880: Scer.....: CGTATACGTCGACGATACAACAAGAACGGTTCATCGGAGCCTCGACTAAAGACGCTTGACGGACTCACTTCCGAGCGCTGGATTCAATGGTTAGGCCTTGAAAGCGACTACCATTGTTCA consensus: ************************************************************************************************************************ 2880~3000: Scer.....: TTCTCTAGTACTCGGAATGCGGAAGACGTAGTGGCAGGTGAGGCGGCGAGTTCAGATCATGATCAAAAAATTTCAAGAGTAACGCGAAAAAGGCCCCGAGAGCCCAAGAGTACAAACGAT consensus: ************************************************************************************************************************ 3000~3120: Scer.....: ATCCTCGTCGCAGGCCGGAAACTCTTTGGCAGCTCCTTTGAATTCAGGGACTTGCATCAGTTGCGCTTATGTCATGAAATATACATGGCAGACACACCCTCTGTGGCAGTACAGGCCCCA consensus: ************************************************************************************************************************ 3120~3240: Scer.....: CCGGGCTATGGTAAGACGGAGTTATTTCATCTCCCCTTGATAGCACTGGCATCTAAGGGCGACGTGAAATATGTGTCGTTTCTGTTTGTACCGTACACAGTGTTGCTTGCTAATTGCATG consensus: ************************************************************************************************************************ 3240~3360: Scer.....: ATCAGGTTGGGCCGACGCGGTTGCTTGAATGTGGCCCCTGTAAGAAACTTTATTGAAGAAGGTTGCGATGGCGTTACTGATTTATACGTGGGGATCTACGATGATCTTGCTAGCACTAAT consensus: ************************************************************************************************************************ 3360~3480: Scer.....: TTCACAGACAGGATAGCTGCGTGGGAGAATATTGTTGAGTGCACCTTTAGGACCAACAACGTAAAATTGGGTTACCTCATTGTAGATGAGTTTCACAACTTTGAAACGGAGGTCTACCGG consensus: ************************************************************************************************************************ 3480~3600: Scer.....: CAGTCGCAATTTGGGGGCATAACTAACCTTGATTTTGACGCTTTTGAGAAAGCAATCTTTTTGAGCGGCACAGCCCCTGAGGCTGTTGCTGATGCTGCGTTGCAGCGTATTGGGCTTACG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 3600~3720: Scer.....: GGACTGGCCAAGAAGTCGATGGACATCAACGAGCTCAAACGGTCGGAAGATCTCAGCAGAGGTCTATCCAGCTATCCAACACGGATGTTTAATCTAATCAAGGAGAAATCCGAGGTGCCT consensus: ************************************************************************************************************************ 3720~3840: Scer.....: TTAGGGCATGTTCATAAAATTTGGAAGAAAGTGGAATCACAGCCCGAAGAAGCACTGAAGCTTCTTTTAGCCCTCTTTGAAATTGAACCAGAGTCGAAGGCCATTGTAGTTGCAAGCACA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 3840~3960: Scer.....: ACCAACGAAGTGGAAGAATTGGCCTGCTCTTGGAGAAAGTATTTTAGGGTGGTATGGATACACGGGAAGCTTGGGTGCTGCAGAAAAGGTGTCTCGCACAAAGGAGTTTGTCACTGAcgg consensus: ************************************************************************************************************************ 3960~4080: Scer.....: tagcatgcaagttctcatcggaacgaaattagtgactgaaggaattgacattaagcaattgatgatggtgatcatgcttgataatagacttaatattattgagctcattcaaggcgtagg consensus: ************************************************************************************************************************ 4080~4200: Scer.....: gagactaagagatgggggcctctgttatctattatctagaaaaaacagttgggcggcaaggaatcgtaagggtgaattaccaccgattaaggaaggctgtataaccgaacaggtacgcga consensus: ************************************************************************************************************************ 4200~4205: Scer.....: gttct consensus: ***** { alias......: ['BET1', 'SLY12'] chromosome.: 9 description: involved in ER-Golgi transport end........: 348502 exons......: [(1, 11), (143, 560)] gene.......: BET1 introns....: [(12, 142)] length.....: 560 name.......: YIL004C plength....: 186 start......: 347943 tdist......: 91383 type.......: ORF up.........: 0 } Scer: 2 donors and 1 branches Spar: 3 donors and 2 branches Smik: 2 donors and 1 branches Sbay: 1 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 678), ('Spar', 678), ('Smik', 678), ('Sbay', 678)] ->[('Scer', 42)] ->[('Smik', 1129)] ->[('Spar', 275)] ->[('Spar', 380)] ] [ ->[('Scer', 786), ('Spar', 786), ('Smik', 786), ('Sbay', 786)] ->[('Sbay', 1256)] ->[('Spar', 416)] ] 0~120: Scer.....: gcttaattgtaatagtcgtattagttttgggtgctcctcgacgcatgtgtatagtt-ttca-----------------------ttttgatggtgtaaaacgttcatgacta----atga Spar.....: tcctacttgctatattcgtgtacggtttggattctctgtgacgcatgcgtacagtt-ttcaactttttctttcaatttgttttgtattgatggtataaaacgttgatgacta----agga Smik.....: tcttacttgttata-ttgtacaagatttgaatccttgctggcacatacgtgtagtt-ttcagcttttt---tcaagtcttcttaaattgatagtatataacgttgatgacta----agga Sbay.....: ctctacctgttattttgtttgtgtgattaatttattcgtgatgtatatgtttatctagtcaacct------tcaatttcttacaaatcaatagtggaaaactatgatgactaaagtaaga consensus: ** ** ** * * ** * * * ** ** * * *** * ** ** * *** * ******* * ** Scer_spli: DDDDDD 120~240: Scer.....: agccttccgatttctttccattttgctattac---ttgcgcgatgagccgtctaatgtgattcttccaaataatatctaataaacccatggtgt-ttactctgtgataggaaccaaagat Spar.....: agccttccgagttctttcca-tttgctattac----tgcgcgatgagccgtctaatgtgattcttctaaataatgcctactaaattcatagtat-ttatttgctgatagtagctaaag-t Smik.....: agtccttccgattctttcca-ttagctattgattgatgcgcgatgagccgtctaatgtgattcttttgaataatgcccatcaaattcatggtat-tcatttactactatttgtcaag--- Sbay.....: atctatctcaattcccttccatttagtattac----tacccgatgacccgtctaatgtga-taatcaaaataatgccaataaacaccacagtgtattagttactagaagttttcaaga-g consensus: * * *** * * ** **** * * ****** ************* * * ****** * * ** ** ** * * * * * * ** 240~360: Scer.....: cccgtaatta--tcgctttgtaattgtatttccagttatttctgtacattctaggttactgttcag---ggatatgtt-tcactcttatcgatgtggcgtgcaaaaaatttgaaggggcg Spar.....: gcctcaacgg--tcgctttataattctattttcaggtatgtccgtacattctaggttagtgttcaa---ggatatgtt-ttactcgtgatgattcgatgtgc-caaaatttgaaggtgcg Smik.....: --cacaatta---cgcactaaaataaaaatctgaggtattttcgtacattctagattactatcaaa---agatattttattacctgcatcaatttggtgtgc---aaagtaaacgaaacc Sbay.....: caagtaacgacatcactttcaagcgtttcctgcagg-agtttggtggagtctaaaatacagctaaacccgagttgctttttactcatgaccattcgatatc--aaagataaaaaaaaatt consensus: ** * * * * ** * * ** * **** ** * * ** * ** ** * * * * * Spar_spli: DDDDDD 360~480: Scer.....: acatatcagggaaagtattagtga-ttttttataatgttgcactat-ctcagatgaaatttatgcatgctaattggcggatactactctaccgttgttgcaagctacgtaggaacgttc- Spar.....: a-acagcagaaaaaacgtttgtgagtcttctatattcttgtattat-ttcaggcgaaactaacacttgttgattaatgaatactacctcatcgttggcttaagctacgtaaggagattc- Smik.....: gaacagca--aaaagtattcagaacttgtccttattcct----ttt-tttaggcaatacttattcgtattg-ctaatgagtgccggcctactattggagtaagctacgtacgagtctcg- Sbay.....: ttcaagtcaagaaattaattttgaaagctgtacactctttcataatatccagcgggcaactagttacagtttttgatgtgatacagaccaccattgatacaagttacgtgagaatttgga consensus: * *** * * * * * * * ** * * * * * * *** *** ***** * * Spar_spli: DDDDDD BBBBBBB 480~600: Scer.....: acggctctttcttccattaatttt--aaattgcgaaagtatccagtagttgttaaaaatg-gagtttttt---caactcgcgccttttgccaaggaatggtagaaaacaaacagtagttc Spar.....: atcattctttctttcatacattttccacatcacgaaagtatccagtagctgctaaagatg-gagtttttt---caactcgcgccctttgccaaggaatggtagaaaacaaacagtagttt Smik.....: acaa-tgtaccataaattatgtttttacattacaaaagtatccaacagctgcgaaagatgagagattttt---taactcgcgctttttgccaaggattggtagaaaataaacagtgaagt Sbay.....: atcggcccttttttcattagtattttccaaca-ggaactatcgaggaatggctgataatc-gagttttttcaccatctcgcgccctttgccaaggaatggtggaaaataaacatagaagt consensus: * * ** ** * ** **** * * * * ** *** ***** * ******* *********** **** ***** ***** 600~720: total....: ====== Scer.....: actt--gagac-tgtgaatgtgttagaaaatgtgattgaagagcctcacaacactaggctacacag-ATGAGTTCAAGGTATGAGAAATTATTAGACTATTCTAAAGTTAGAGTAGCGCT Spar.....: attttgaagat-gttgaatgtgttaaaagatatggttgaagaatcttacaacaccaggccacacag-atgagttcaaggtatgaaaaa---ttagact-ttctacatttagagtagccct Smik.....: attttgaggatgtgtaaatatgttggtaaggaccattgaagaattctacgacaccgggccacatag-atgagttcaaggtatgacagaatatcagcctactctacactttgagtagtctt Sbay.....: atattaagagaatgttga----atggtgctgctggttgaataaccctataagaccaagaaatacagaatgagttcaaggtatgaaaagatttcgggctattctatactt-gagtaggcct consensus: * * * * * ***** * * * ** * * * ** ***************** * * * ** **** * ** ****** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >========================================= 720~840: total....: ======= Scer.....: TTTTGTTAAACATCTACCATAACACCTCGATATTGGGAGTT--ATTGACCACGAGTGAACTTCGTTTACTAACTATAGCGT-GTGTATATAGATTTGCAGGGGGAAACGCTTATCAACGT Spar.....: tttt-ttcgacgtttactatagtacttcgatactaggaatt--attgtccacaagtgaattcgttttactaaccatagcacggtgtatacagatttgcagggggaaacacttatcaacgt Smik.....: ttt--ttcaatgtttaatatagtacttctatattaggagta--gtagtttataggtgaattttgtttactaaccatagtagggtttatatagatttgcagggggaaacgcttatcaacgt Sbay.....: ttt--tccaacattttcagcagcgtttcgacaccggggaatgggcaattcataatcgaatcgggtttactaactataatgaggattatatagatttacagggggcaacgcttatcaacgt consensus: *** * * * * * ** * * ** * *** ********* *** * **** ****** ******* *** *********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==========================================================================================>= 840~960: Scer.....: GATACTGGTAGAACACAGTTATTCGGACCGGCTGATGGATCAAATAGTCTCGATGACAATGTATCATCAGCGCTAGGGAGCACAGATAAATTAGACTACTCCCAAAGTACTTTGGCATCT Spar.....: gatactggtaggacacaattgttcggaccgcctgatggatcaaatgatctcgatgacaatggatcatcagcgctagggagtacagacaaactagattactctcaaagtactttggcatca Smik.....: gatactggtaggacacaattgttcggagggcctgatggatcaggtaatctcgatgaccgtggatcatcagcgttaggaagtacagaaaaattagattactcccaaagtactttggcatca Sbay.....: gatactggtaggacacaattgtttggaacacctgaaggttcaagtaatctcgatgacaatggctcgtcatcgtttggtagtacgggaaaattggactattctcaaagcactttagcatca consensus: *********** ***** ** ** *** **** ** *** * ********** ** ** *** ** * ** ** ** * *** * ** ** ** ***** ***** ***** 960~1080: Scer.....: CTTGAATCTCAAAGTGAGGAACAGATGGGAGCTATGGGTCAGAGAATAAAAGCACTCAAGTCATTATCGTTGAAGATGGGTGATGAGATTAGAGGCAGCAATCAAACTATTGACCAGCTT Spar.....: cttgaatctcaaagtgaagagcaaATGGGGGCTATGGGTCAGAGGATAAAGGCACTGAAGTCACTGTCATTGAAGATGGGTGATGAGATTAGAGGCAGTAATCAAACTATTGACCAGCTT Smik.....: ctagaatctcaaagtgaggagcaaATGGGAGCTATGGGTCAAAGGATAAAGGCGTTGAAGTCATTATCATTGAAGATGGGTGATGAGATTAGAGGCAGCAATCAAACTATTGACCAGCTT Sbay.....: ttggaatctcaaagtgaagagcaaATGGGAGCCATGGGTCAAAGGATAAAGGCTTTAAAATCATTATCATTAAGGATGGGTGACGAAATTAGAGGAAGTAATCATACTATTGACCAGCTT consensus: * ************** ** ** ***** ** ******** ** ***** ** * ** *** * ** ** * ********* ** ******** ** ***** *************** 1080~1200: Scer.....: GGTGATACTTTCCATAACACTTCTGTAAAACTCAAAAGGACTTTTGGAAACATGATGGAGATGGCCAGAAGATCTGGGATCAGTATAAAAACATGGTTAATAATATTTTTTATGGTAGGC Spar.....: GGTGACACTTTCCATAACACCTCCGTAAAACTCAAAAGGACTTTCGGCAACATGATGGAGATGGCCAGAAGATCTGGGATCAGTATAAAAACATGGTTAATAATATTTTTCTTTGTAGGT Smik.....: GGGGATACTTTCCACAACGCTTCTGTAAAGCTGAAAAGGACCTTCGGTAGTATGATGGAGATGGCCAGAAAATCCGGGATTAGTATAAGGACATGGTTATTGATTTTTTTCGTGGTAGGC Sbay.....: GGTGACACTTTCCACAACACTTCCGTCAAACTAAAAAAAACTTTCAGTAATATGATGGAAATGGCTAGGAGATCAGGAATCAGCATAAAAACATGGTTGATAATATTTTTCTTCGTAGGC consensus: ** ** ******** *** * ** ** ** ** **** ** ** * * ******** ***** ** * *** ** ** ** **** ******** * ** ***** * ***** Smik_spli: DDDDDD 1200~1320: Scer.....: GTGCTATTTTTTTGGGTATGGATTACATAAatatttgcatattgtacattaaacctaagtgacaaaa---taagagcgacgtttgttagatgattgtaga-tattgatacg----tgaaa Spar.....: GTGCTTTTTTTTTGGGTGTGGATTACATAAatatttgcatattgtacattaaaactaagtgacaaaa----aaaagtga--------------------------------------aaa Smik.....: ATACTTTTTTTTTGGGTGTGGATTACATAAatatttgcatattgtacattaaaactaagtgacgaaa---gaaaaccaagtttgttacgttgttataggattatttatacg----cacaa Sbay.....: TTGCTTTTCTTCTGGGTGTGGATTATATAGacatttgcat-ttgtacattaaaacaaattaacgaaatgataaaatcagtgacgttatatgagtggtaaattattaatacgtttacataa consensus: * ** ** ** ***** ******* *** * ******** ************ * ** * ** *** ** * ** Sbay_spli: BBBBBBB 1320~1389: Scer.....: ta-aaggatagttatgatagcatcataagatatcagcattctttta-tttttataactactt-aagcgt Spar.....: tg-aaagatagctatgatagcatcataagatatcgacattcttttattttttataactacct-aaacat Smik.....: tg-aaagataactataataacattataa-atatcaat-ttttttta-cttttatatttacttcgaacgt Sbay.....: tatgaaggtagctatgatagcatcataaaataccgaaaatttca---tctctgtaactattcatacagt consensus: * * * ** *** *** *** **** *** * * * * * ** ** * * { alias......: ['EST3'] chromosome.: 9 description: 181aa protein - 20.5 kD end........: 336209 exons......: [(1, 276), (278, 547)] gene.......: EST3 introns....: [(277, 277)] length.....: 547 name.......: YIL009C-A plength....: 182 start......: 335663 tdist......: 103676 type.......: ORF up.........: 0 } Scer: 11 donors and 0 branches Spar: 7 donors and 3 branches Smik: 5 donors and 4 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 2629), ('Spar', 2629)] ->[('Scer', 2774), ('Spar', 2774)] ->[('Scer', 3256), ('Spar', 3256)] ->[('Scer', 3713), ('Spar', 3713)] ->[('Scer', 4036), ('Spar', 4036)] ->[('Scer', 2758)] ->[('Scer', 4726)] ->[('Scer', 5469)] ->[('Scer', 5712)] ->[('Scer', 5852)] ->[('Scer', 7096)] ->[('Smik', 440)] ->[('Smik', 1614)] ->[('Smik', 1847)] ->[('Smik', 1985)] ->[('Smik', 2323)] ->[('Spar', 3118)] ->[('Spar', 3400)] ] [ ->[('Smik', 701)] ->[('Smik', 1085)] ->[('Smik', 2199)] ->[('Smik', 2576)] ->[('Spar', 5270)] ->[('Spar', 6458)] ->[('Spar', 6760)] ] 0~120: Smik.....: atatttggcgaaaacgtaagccatgtcccttctagtacaaatatattgtcttctggtaattaattttatctgttccatatatgagggtggactccatacggatgtagtgaaatcaacacc 120~240: Smik.....: agagtttctggcttcttcttccaataaacttaaattatcggcaattctcaccttctcataagaggattcccaaagtgcagcccagttggttgaagaacttgcctgtctttgacaggatgt 240~360: Smik.....: ccgctcgtcgaatttactggaggttgacttttctacatcatcgatttctatattggtactcccactaccaacaacgtcaataataaaatcggctggattatccatttctttatcaaaagt 360~480: Smik.....: taagcattcatcgtgagctacaaagtagtcacaggcatctgttaatgaaccaaaatagacacattcaccccctctttttagtaagtagatgttgtcaaaatagctgataacacttttgct Smik_spli: DDDDDD 480~600: Smik.....: aggttggtgaatagtacataatattgcctgcccttgcattgaaagttttttcaagaattgaacaatagtcaaagctgcttcagcatctaatcctgaagtaggttcatctaaaaataataa 600~720: Smik.....: cagagaaggtttagtaaccagttcaacaccgatagataataattttctttgagttggagataaatcggtaacaagttttcccgaaggtaattttaataggttactaacaacccctaaata Smik_spli: BBBBBBB 720~840: Smik.....: ctctttgtcaccatcacctcttagaacgcaggaaatttccaaagactcttttacagttaaaagctccaagtgtacatcttgctgctgaacgaacccgatacttcttctgaaagcatcaat 840~960: Smik.....: atctgttaatggtcggccatcgattaataattcaccagttacaacaccactttcagttctttgagataaaacatttaacaaagtcgttttaccagcaccagactcgcccattaaggcagt 960~1080: Smik.....: taacccagaacttatataaccggaagcgtcgctaattaattttttgtctccaatggtataattgatatttttccaagaaatgacgtgcttatgtgtttccatagctacggattccttagc 1080~1200: Smik.....: gtggttattaacattttcatcatcaggatgcttgatattgtaatcagtgtcgtactgatgagagacggatggtatagatgaggatgaagtggaaaaatttgctactggggacttaggaat Smik_spli: BBBBBBB 1200~1320: Smik.....: tcttattccagtatttttagcattgtaatttccttttttattcctgctacttatatagggacaatatcttttaagatagcaattccaacgtaacaagttttctctcgtgaagagaggtgt 1320~1440: Smik.....: aatatattcggcggctagcaaagaacagaatagaaagaaacacagaaacccgataataatgccgaaatttctccatacgtggttgtaactgtactttagcccactttttagataatcatg 1440~1560: Smik.....: gcctcttacgtaattgttacctagggtagcaccttgccaagcacaagctttatgactaaatgatatgttgtcataatattcacctctaggaataatgctttcgtgacagtctagctttag 1560~1680: Smik.....: gttgaacaattcgttgcttagtatagcttccattgcaaacatagcaggattcaagtatgcaatccagataaaccatgggtgcatatctttcatgtaaataacataagacgcatacatggc Smik_spli: DDDDDD 1680~1800: Smik.....: aatggctagcagtaaaattccggctaaaaggtttgccattgataaagtcggagcgatcaaagcggtcaaggcaaatagtgacaccatgcaaaagttgtagacagaaaggaatagcaaaaa 1800~1920: Smik.....: gatgaaaaacctagcggcattgtattgcaagtgagctaaaaagtaaagtatgatggtgaaaacaaccacgagtataaatttagagcagcagtcaaaaaagtttgtcgctaacgtttccac Smik_spli: DDDDDD 1920~2040: Smik.....: ccaattataataaaaatgaagttggacgtgcttacggacaacgggaagcctctgaaaggaagcaggcatgtcagccaaagaaaggaatgtaaagaacaggatggaaaaaaaagttaaaga Smik_spli: DDDDDD 2040~2160: Smik.....: tcctcttgaaaatgacccaattgttgttagtggaatattataaaaaagagacccaatcaccaaggactgtactataacagaaatcaattgagagatcaagtaatttttgtcaccaatgat 2160~2280: Smik.....: tctttggaacgctcttacagtacacgtttttagttgcgctactaatggaatgctaaaaatgggagaaatgtcatctggattgacatcctttctagtgcattcttgtattgtttttgaagt Smik_spli: BBBBBBB 2280~2400: Smik.....: ttttgtcttccagtttttatagtatggagattgaacccatagtgtatgcaaatctgtttcattattgatgttcaacgctcgattttctgctgagacaacagatggtgtatcaagaccgat Smik_spli: DDDDDD 2400~2520: Smik.....: aatggaatttttcgtttccttgaatttgaaattcaagattgatgttaaatattcgataatgcaatcgttagggtttttctttatctgcaaagtatcatggaaatggctcaaacattcgtc 2520~2640: Scer.....: ---------------------------------------------------------------------------------------------------------tgatgtatgctcatg Spar.....: ---------------------------------------------------------------------------------------------------------tgatgtatgctcatg Smik.....: tatggttccataaaatacctggaatgaatcactaagcataaggatcttgtcaaatttgctaacaattttgtcactagcttgagaaattttgacaaaattcaccgatcttgtNNgctNNNg consensus: * ************ Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: BBBBBBB 2640~2760: Scer.....: tcagc-ttc--aggaagagagggaaagt--gataaagtgttaatacgctagtctcgcttttatgcatgcagaaagcaaatagcaaaaaaaaaaaaaaaaaaaaaaaaagaggaagaatgt Spar.....: tcatc-ttt--aggaaaggagggaaagt--gataaagtgttaatgcgctagtctcgcttttatgcatgcagaaaccaaatagc--------aaaaaaaaaaaaaaaaagaggaagaatgt Smik.....: NcaNcNttcNNNgNNaNggaNagaaaNtNNNaNNNNNtgNNaNNatNNNagNctNNNNNNNaNNNNNNNNNNNNgNNNaNaNNNNNNNNNNNNaNaNNNNNNNNNNNNaNNNNNNNaNNt consensus: *** **** ******* *** ********************** **************************** ******** ***************** *********** Scer_spli: DD 2760~2880: Scer.....: cagttatgttgcgggt-taagtctatttcgattggag----ttcggggaaagat--------cgtttagagaactgaaata-tatggttttgcaa--cttcgctcgatgctgtcgtgcga Spar.....: caattgtgttgcgggt-taagtctatttcgattggag----agc-gggaaagat--------cgtttagagaattgaattc-tatag-tttgcaactcttcgctcgatgctgtcgtacga Smik.....: NNNtNNtNNNNcNgNNNNNNNNNNaNNNNNNNNgNNNNNNNNNcNNNNaNaNNNNNNNNNNNNgNNNNNNNNNNNNNNttNNNNNaNNNNNNNNNNtNtNNNNNNNaNNNNNtNNNNNNN consensus: ** ** *********************************** * **************************** **** * **** * ******* ******************* *** Scer_spli: DDDD DDDDDDD Spar_spli: DDDDDDD 2880~3000: Scer.....: gaatctaagagagaaacagaatagc-caaggcttctgccacttttaactttaaagctttgagataacgaaaagttcactcg-atgttct-----tttttttt-aggattttcgattgtcg Spar.....: gaatctaagagagaagcgaaatagc-caaggcttctgccacttttaactttaaagctttaagataacagaaagttcatttg-gtgttct-----tttttttt-atgattttcgattgtcg Smik.....: NNNNNtNNNNNaNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNtNNNNNNtNNNNNNNtNNgaNaNNNNaNNNNNNNNNNgNNNNNNNNNNNNNNNNNNNtNNaNNNNNttNNNNNNNNN consensus: *************** * ************** ************************* ******* ******** * ** ********************* *************** 3000~3120: Scer.....: gtt--ctgta---attgatgttgtgcttggttag--tttgggtcggccatttc----atctgtagccttaagcttctgcattactttcagtggccgtagaaagcttttacctgaaaaagt Spar.....: gtt--ctgta---attaatgttgtgc-tggttag--tttaagtcggccatttc----gcctctagccttgaccttctgcattactttcagtggccgtagaaagcttttacctgaaaaagt Smik.....: aNtNNNNgtaNNNNNNNNNNNNNNaNNtNNtNNNNNNNNNaNNtNNNNNNtNNNNNNNNNtNNNNNNNNNNNNNNNNNcNttNNNNNNNNNNNNNNtNNNNNNNNNNNNNNNNaaNNNgN consensus: *************** ******* * ************ ** ************* ** ******* * ************************************************ Spar_spli: DD 3120~3240: Scer.....: at--attaccaaaaact--gctggt-atcatg-cgtctgaaatctccaaa-atttcgccttgacaaagaccgtagcctatttttacgctttccgattcttgacgaaaggcacaacta--t Spar.....: at--gttaccaaaaact--gttggt-atcatg-cgtctgaaatctccaaa-atttcgccttgaaaaagaccgtagcctctttttatgctttccgattcttgacgaaaggcacaatta--t Smik.....: aNNNNtNNNNNNNaNNNNNNNNNNNNaNNNNgNNNNNNNNNaNNNNNNNaNNNtNNNNNttNNNNNNNNNNNNNNNNNNNNNtNNNNNNNNNNNNNNNNtNNNNaNNNNNNNNNNNNNNt consensus: **** *************** ****************************************** ************** ****** **************************** ***** Spar_spli: DDDDDD 3240~3360: Scer.....: gaat----tttacttcgtaagtttctgacac-tcagaggtc-gcaat-aatcacttgg---gtgcaatacgctagg---taggacc--tctagcgaaagaaaaagtggtc--caa--taa Spar.....: gaat----tttacttcgtaagtttctgacac-tcagaggtc-acaat-aatcatttgg---gtgcagtgtgctaggacttttagcg--acaaggaaaaggaaaagtggtc--caa--tag Smik.....: NNNNNNNNNNtNNNNNNNaNNNNNcNgNNNNNtNNgNNNtNNNNNNNNNNNtNtNtNNNNNgNNNNNNNNNNNaggNNNNNNNNNNNNNNNaNNNNNaNNNNaNNNNNtNNNNaNNNNNN consensus: ****************************************** ******** * ************ * ****** * * ** * ** **** ******************* Scer_spli: DDDDDD Spar_spli: DDDDDD 3360~3480: Scer.....: agatttctctttcgtatc------ttcattccgacaagtg---------gttagctgtagtgata-aaagtggtcatagca--ttccagt-ttccaaacggg-----------gaca--- Spar.....: agaat--tctttcgtagc------ttcattttgacaaaag---------gttcgtcatggtgata-aaagtggtcatagcatttttcagt-ttcccaagggg------gaactgacaaac Smik.....: NNNttNNNNNNNNNNNNNNNNNNNNNNNtNNNNNNaNNNNNNNNNNNNNNNNNNNNNNNNNNatNNNNaNNNNNNNNaNNNNNtNNNNNNNNtNNtNtNNNNNNNNNNNNNNNNNNNNNN consensus: *** * ********* ************* ***** ************* * * ********************** ** ********* * ********* **** Spar_spli: DDDDDDDDDDDDDDD 3480~3600: Scer.....: aaaatctgatgggtggttgc-ttcgctt--gctatacgttagt---taaggtatcattaatgtcattatttttgtt-tt--ttatcctggtttagttatctgtaatggtgggatcactaa Spar.....: aaaatctaatagatggttgc-ttcgctt--gctaaatgttggt---cgagat-tcattaatgttattatttttg-t-tt--tcgttctgatttcgttatctgtaacggagggatcatcaa Smik.....: NNNNNNtNNNNNNNNNNNNNNNNNNNNNNNNtNaNNNNNNNNNNNNNNNNaNNtNNNNNNtNNNNNNNNNNNtNttNNNNNNNatNNNNNNNNNNNNNNNNNNaNNNNaNNNNNNNNNNN consensus: ******* ** * ****************** ** * *** ***** ** * ********** ********** ******* * *** *** *********** ** ******* ** 3600~3720: Scer.....: aatgcaaaggaa--att------ccagatataaaaaaaatttcttgtc--ttatttattta----gtttacgt---acccttccaaatgggtgcttgcctgtaaacaatgatggttcgtt Spar.....: accgttaaggaa--atg------ccagatac--aaaatatttcttgtc--ttatttattta----gtttacat---atcttttt-gatggggacttgcctgtaaacattgatggttcgtt Smik.....: NNNNNNNNNgaaNNaNNNNNNNNNNNNatNNNNNaNNNaNNNNttNNcNNNNNtttaNNNNNNNNNNtNNNaNNNNNNNNNNNNNaatNNNNNNNNNNNNNNNNaNNNNNNNaNNNNNNN consensus: * * ********** ************* **** ********************************* ***** * ** ***** ************** **** ******* Scer_spli: DDDDDD Spar_spli: DDDDDD 3720~3840: Scer.....: ccggtaaacttttggcgctctattgttgagctatttctaatattttgttgggcgtttgatatta-tatg---atgatttagtctgggcgttggcgtcagcgccttagatgtagtgttttc Spar.....: ccggtaaacttttggcgttatattgttgagctatttatgatattttgttgggcgtttgatgtta-tgtg---ataatttagtctaggcgttggcatcagcgccttagatgtagcattttc Smik.....: NNgNNNNNNNNNNNNNggNNNaNtNNNNNNNNNNtNNNNaNNNNNNNNNNNNNNtNNNNNNNNNNNNNNNNNatNNNNNNNNNNaNNNgNNNNNNNNNNNNNNNtNgNtgNNNNNNNNNN consensus: ***************** * **************** * ********************* ***** ******* ********* ********* ****************** ***** 3840~3960: Scer.....: aaagcagagctgcag-tgaagaaagaaaaaaaaaatgcttattatggcatagtacatcgttaggggagagtaaaaacaatcatcta---cga--tggtccgggtatttaacgaa--atct Spar.....: aaggcagaactgcag-tgaacaaaaaaaa-------gcttatgatggcatagaacatgctaaagggagagt-aaaacaatgatcta---cgaggttgtccgggtatttagtgaa--atct Smik.....: NNNNNNNNNNNgNNNNNNNNNNNNNNNaaNNNNNNNNNNtNNNNNNNNaNNNtNNNtNNNNNNNNNNaNNtNNNNNNNNNNNNcNaNNNNNaNNatNtNNNNNNaNNNaNNNNNNNaNNt consensus: ** ***** *********** *** **** ****** ********* **** * * **** *** ******** *********** ************* ********* 3960~4080: Scer.....: --gagcagaacccttttaagggcgtcggtcgttccttggataga-tcatg---ctatgtatagaatcatcttaagggttaagt-tattcgtttgtttacctctttccttccatcgggatt Spar.....: --taacaaaacccttttaagggtgt-ggtcgttcctttaatagatttatg---cgaagtgtagaattattttaagggttaagt-tattccgttgcttacctctttgcttttatcgaggtc Smik.....: NNNNNNNNNNNNNNNNNNaNNNNNNNNNtNNNtNNNtgNNNNNNNNNNNNNNNNNNNgNNtNNaNNNNNNtNaNNNNNNNNgtNNNNNNNNNNNNtNNNNNNNttNNNNNNNNNNgNNNt consensus: ** * ** ************** ** *********** ***** * ******* * ** ****** ** ******************* *** ********** *** **** * * Scer_spli: DDDDDD Spar_spli: DDDDDD 4080~4200: Scer.....: ac-------taaga--tctcaagattctttaaaggcgctgatttgatctta-aatcggactttactggt--acctgacatg-tccttt-tctt-gctagtcaccg---ttt-attcttaa Spar.....: ac-------taggatgtcctgagtttcttcaaagatgc-gattcgatctta-aatcggattttattggt--atcccaaatgagtactt-tttt-ggtagtctccgcttctt-cttcttac Smik.....: aNNNNNNNNtNNNNNNNNNNNNNNttNNNNNNNNNNNNNNNNNcNNNNNNNNaaNNNNNNNNNNNtgNNNNNNcNNNNNtagNNNNNNNNNNNNNNNNgNNNNNNNNNNttNNNNNtNNN consensus: *********** ** ** ** ***** **** ** **** *************** **** ******* * * ** **** **** ***** *** *** ****** 4200~4320: Scer.....: t--caagaatgtcaccaa-ttttctgcgataatcca-aaacaaaaaagcgtt-tagcgtagctttttggaggcttccgttttctgatgaaagtgatactgttggctagaaagagca-tgc Spar.....: t--aaagaatgtaactaa-gtttttgcaacatttga-aaccaaaagagcgtt-tagtatagttgtt--ggggtttcca-tttctcataaaagtggtactgctagctataaaaaata-tac Smik.....: NNNNNNNNaNNNNNNNNNNNNtNNtNNNaNaNNtNaNNNNNNNNNNNNNNttNNNNNNNNNNNNNtNNNNNNNNNNNNNNNtNNNNNNaNNNNNNNNNNNttNNNNaNNNNNNNNNNNNc consensus: *** ******** ** *** *** *** * * * **** ***** ********** *** * ** * ** **** ***** ** ****** ***** * **** *** * *** * 4320~4440: Scer.....: taagaatcctcccatcgggagccctccgaagggaattaatggc----cttgtat-tgtct-ttaaatac-gtctgtgttcggtccatagattatctatt-----------attcattatt Spar.....: taggagtcctcctatcggaacgtcacaagaaggaatcaaaaacaacttttaaat-agtatattgaatac-gtctatcctcggtccgtaggttatcgtttcatctcactacgttttccatc Smik.....: tNNNNNNtcNNNNNtNNNNaNNNNNNNNNNNNNNNNNaNNNNNNNNNtNNNNNNNNNNNNNNtNNNNNNNNNctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNtNtt consensus: ** ** * **** ***** * * * * ***** ** * ** *** ** * ** ********** * ******* *** ***** ** ** ** 4440~4560: Scer.....: tcactacgccttcaaatccttgtg-----ctttag-ttcccctaaaaatgata-gcctttg-atttcattttttcactccgattattttacgtcatgaccta-aaggccatgaatta--t Spar.....: tcactaccttttcaatccctggcg-----ctttagtttcccctaaatttgata-atctctgaacttcatttttctgatctgatta--ttacgtcatgtttca-ataaccgcagattc--t Smik.....: NNNNtNNNNNNNNNNNNNNNNNNaNNNNNNNtNNgNNNNcNcNNNNNNNNNNNNaNNNNNNgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNNNNNNtNNNt consensus: ******* ***** *** * *********** ********** ****** ** ** * ********* ** ***** **** ***** *** ** *** *** 4560~4680: Scer.....: aacaaaacaggtgataaccgtgatcctgttatg---ctaatgatcgaagcgctcctgccccaggactgcgtataatgc-ctgtaatttt-tcaaggaaaagagtgg-------------- Spar.....: agcaacacgaataataatcttcatcatatcata---cttatgaccagcgtgttcttgtccccggaatacgtataatat-ttccatttttctcaaaaaaaaatataaaatatcattgtaaa Smik.....: NNNNNNNNNNNNNNNNaNNNNNaNNNNNNNNtNNNNcNNNtNNNNaNNNNNtNNNNNNNNNNNgNNNNNaNaNNNNNtNttNNNNNtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: * *** ** * **** * * *** * * ** ***** **** * * * ** ** *** *** * * ****** * * * **** **** **** * 4680~4800: Scer.....: --------------tccaaaactataacataagt---------tgagttcgtcaccaaccgtccctcgacgtgttg--atagtgaggatcatcaaatatacaaggacctcgttacctcct Spar.....: attttctactggtttccaagctgcccacatggat---------taaggtcgttaccatcagtctctcaacgtgctg--atgatgagaataatctaatata-gagcacgtcattgccatct Smik.....: NNNNNNNNNNNNNcNNNNNNNNNNNNacNNNNNtNNNNNNNNNNNNNNNNgNNNNNNNcNNNNNNtcNNtNNgtNNNNNNNNNNNNNNtNNNNNNNNaNNNNNNNaNNtcNNNNNNaNct consensus: ***** **** *********** ** **** **** * *** *** * *** ****** **** ** *** ****** ** ** ** ** ** ** Scer_spli: DDDDDD 4800~4920: Scer.....: tatatag-acgatgactcgcgtgc-----caaatagaattgaca-tcatc--ccagaaaataaatttgttacgtaagacaaagaaataaaataaacg-atagattttt-tgcaga-ggtc Spar.....: tgaatgg-atgatggctcgcgtgt-----cagatatagttgac---tatc--ccaggaaattattttgttatgtaaggcaaagaagtaaattaaacgtgtaaattcctgtaccga-gatc Smik.....: NNNNNgNNNtNaNNNNNNNNNtNNNNNNNNNNatNNNNNNNNcaNNNaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNaNNNNatNNNNNNNNNNacNNNNNNtN consensus: * ** *** **** ******** ******* *** * ***** * ********* **** * ******* ***** ******* **** ****** ** *** * * * **** ** 4920~5040: Scer.....: aggggatttcttcaattgaataagggcttttaagccgtctcctctcttt-gatattttt------tttgttttcctttagcacttcgtgatgaattttttgatgggagggatgaaacagg Spar.....: cagagatttctatgaatgga-aagagcttttaagctttctcttgtcaat-gttcctctttggtacttcgttttccgttagcatttggggaggca-tccttggtgaaaggaatgaaacaag Smik.....: NNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNNNNcNNNNNNtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtNcNNN consensus: * ******* * ** * ** ********** **** * ** *** * * ** ** ******* ****** ** * ** * * * *** ** *** **** *** * 5040~5160: Scer.....: caaaaattacactagcatgaaaataacggcacgttccatgcttcaa---agacaaaggtttga------acttgggc---caaattgtgag-----cagctgttttgaatt----aatca Spar.....: cagtgattatgcagatatgagaataacgg-atgtcccttacaatagtctagactagaaagtaatatatcactccaacgtataaattactaagtcttcatctatcatggattatgaaccca Smik.....: NNNNNNNNNNNNtNNNNNNNNtNNaaNNNNNNNtNNNNNNNNNNNNNNNNNNNNNNNNNNcNNNNNNNNNNNNNNNNNNNNNNNNtNNNNNNNNNNcNNNNNNNNNNNNNNNN-NNNNNN consensus: ** **** * **** ******* * ** ** * * * **** * * *** * ***** * ** ** * ** *** * ** 5160~5280: Scer.....: aacagctc------------atggttttt---------cagttctt--ta--tgttcgaa---------ctgggttgtggtc-catatcatgcctcgcctgcaacttacgc-attaacct Spar.....: agcacctttgaagatgttcgatgcttttttgccaatagtagccgct--caagttttcgaagacttctttcaaggaaaagatcacgtacgagagccattccaaaatctaatt-attaacat Smik.....: NNcNNNNNN--NNNNNNNNNNtNNNtNNNNNNNNNNNNNNNNNNNtNNtNNNNNNtNNaNNNNNNNNNNNNNNNNNNNNNNNNNNtNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNcNN consensus: * ** ** *** ***** ** *** * * ****** * ** * ** * ** * * * ** ** ******* * Spar_spli: BBBBBBBB 5280~5400: Scer.....: tcatcacggtatagcggaggcaaagatat----ataacttgcaaattattg-----aaaaacg-------aacatgaaaagtagtagaaaaatcagctaata-gaatctat-cagattag Spar.....: tcgtaacacattcattaatatttaggtat-ttgagaaaccctaagtggcta-----aaaagtg--ttggaaccaggaatgccaagaaaagaagtgggttata-aaatacatacaatatag Smik.....: NNaNNNNNNNNNNNNNNNNNNNNaNaNNNNNNNNtNNNtNtNNNNNNNNNNNNNNNNNNaNtNNNNNNNNNgNNNNNNNNNNNNNNtNNNNNNNNNNtNNNgNNNgNNNNNNNNNNNNNg consensus: ** * ** * * ** **** * ** ** * * ********* *** * ** *** * * ** ** * * ** * * * ** ** *** 5400~5520: Scer.....: gca------tatccattttaaaatgaaaatttatttacg-tata---tcgactagtattcatactactagcatgttaccatatatgctataaaaagat--------gacagaaagattga Spar.....: ttacttatctgttcatttcagtattatcactgtataaag-tatagctacaactgctgcgggagcgacagaaatacgaaaagaagaaccgtagagaaattagttaccgagaacactgttaa Smik.....: NNNNtNNNNNNNNNNtNNNNNNNtNNNNNNNNNNNNNNNNtNNNNNNtNNaNNNNtNtNNgtaNNNNNNNNNtNNNNNNNNNtNNNNNaNNNgNaNNNtNNNNNNNNNNNNNNNNNNNtN consensus: * * * ***** * ** * * * * * ****** * *** * * ** ** * * * * ** * ** ** * * ** * Scer_spli: DDDDDD 5520~5640: Scer.....: gatgtacccatcagat----ttaatgaatgctc--------aaatgcaag---------------tattggtaatg-tataggataatgaaacatataaaaagaaaaagaa-attac-aa Spar.....: agtgaactgattgaatatgctcattttatactcttcttacatagtgtaagatagtctgcgttagtcttcgataataccacagcctaatgtttccacaagaaagcgtaaaag-acagcaaa Smik.....: gNtNNNNNNaNNNNaNNNNNNNNNNNNgNNNtNNNN-NNNNNNNtNNNNNNNNNNNNNNNNNNNNNNNtgNNNNtNNNNNNaNNNNNNNNNNNNNNNNNaNaNNNNaNNNNNNNNNNNNN consensus: ** ** ** ** * * * * *** * ** *** * * **** * * ***** * * **** ** * ** * ** 5640~5760: Scer.....: tattattatgaggaaatatcgtttcccttttgtgga---tatatttccaaggtaa-acttccgcta-attttgtatgcctattac----tatagccttc----aacagcaacgg------ Spar.....: aattccttggacctgacatcattttgttggaatgaaatctatatcctcgaggaga-acttctagtatattctgtatacctaatattgtatatagccttt----agtaacaatggaatccc Smik.....: NNNNNNNNNNNNgtaNNNNNNNNNNNNNNNNNNNNaNNNNaNNNNNNNNNNNNNNNNNNNNNNNNaNNNNtNtNNaNNNNNNNNNNNNNNNNNgNNNNNNNNNNNNaaNaNtNNNNNNNN consensus: *** * ** * *** *** * ** * ***** * *** ******* ** *** * ** **** ** ********* ***** * *** ** Scer_spli: DDDDDD 5760~5880: Scer.....: ------tat-ccaac--agttttacaaa-acttacg-----------------aatttctcaatag----------------------ttgtgtgagtact-----------agtcgacg Spar.....: aacgattat-ctaat--tattctccaaattctcacatttaacggtcgataagtagcttttctacaggaaaacgacatgagaatcacactgacctgaatactttttgcaattggattcgtg Smik.....: NNNNNNNNNNNNNNNNNaNNNNtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNaNN consensus: ***** ** ** ** * **** ** ** * ** ** * ** * *** **** * * Scer_spli: DDDDDD 5880~6000: Scer.....: gatgatagttgg-------tact-tattt--caaca---------------------------------------aatgatacgttttaaactgc------------------------- Spar.....: tattttcgtcgggaacaaatactgtattt--caagatgagatactgttggaatgaaattctaatatcatctatttaatagtatattataatatgcggtgcaagaggatggcataaagatt Smik.....: NNNNNNNNNNNNNNNNNNNNNNtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNaNNtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: ** * ** ** **** ********** * *** ** ** *** *** 6000~6120: Scer.....: ------tagttatc-------------------------------------------------------------------------------------aacact--------------- Spar.....: gagaaacagtcatccaatctaatggaagctgaaatgcaaggattgataatgtaataggataatgaatgacaacatataaaaggaaagaagataaagtttaacactatgtagaactatcga Smik.....: NNN-NNNaNNNaNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNN consensus: *** *** ****** 6120~6240: Scer.....: -----------------------------------tttctaccagattct----------catt-----ata--ttttaaaaaaa----------------------------------- Spar.....: ttcccttttgtggattcctatatcctcgaggagaacttctagtatattctatatacctaatatt-----atagcctttagtaaca--atggaatcccaacaattatctaattattcacat Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttNNNNNtNNNNNNNNNNNNNNNNNcNNNNNNNNNNNNNNNNcagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: ***** * ***** *********** ** * ** *** 6240~6360: Scer.....: ------catatact---------------atacaaata----aacgaaattt--tcata-----------------------gaaacaaa------------------------tccgtg Spar.....: aattctcagatacctcattcgtagctgagttacaaatatatcaacgtggttt--tcaaa------acacccggcattactaggacacaaagaacaagaaaactgtatcttacattccgtg Smik.....: NNNNNNNNNNtNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNagNNNNNNNcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: ** **** ** ***** **** ******** ******* ** ***** ****** 6360~6480: Scer.....: atagt-ttaatg--gtcagaatgggcg-cttgtcgcgtgcc----ag-atcggggttcaattccccgtcgcggagatt-tttttaccataactg--atgacta-----cagttggt-gaa Spar.....: atagt-ttaatg--gtcagaatgggcg-cttgtcgcgtgcc----ag-atcggggttcaattccccgtcgcggagatt-ttttttgctattctgtcgtgacta-acagcagctgatggaa Smik.....: NNaNNNNNNaNNNNNNNNNNNNNNaNNNNNNNNNNNNtNcNNNNNaNNNNcNNaNNNNNNNNNNNNNNNNNNNNNNtNNNNtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaNNNNcN consensus: ************************ **************************** ****************************** * *** ******* *** * * * * Spar_spli: BBBBBBBB 6480~6600: Scer.....: acggtagcgagtaaatatgaaactagacagcaaaag--ttgaccatagataatgaatta--aaagctgtaaatcctggg-tacaaatcgggataacaagtaaacaATGCCGAAAGTAATT Spar.....: gtggtaacaagtagatatgaaagtaaacagcaaaag--ttgaacacaaacaatgtaata--taagctgttgatccc-gg-taagagtccggatactaagttaacaATGCCAAGAGTAATT Smik.....: NNNNtNNNNNNNNNNNNcgNNNNNagNNagNNNaNNNNNNNNNNNNNNNNaNtNNNNNaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: **** * **** *** **** ** **************** ** * * **** * **** ******* **** ***** * ** ***** **** ********* * ******* 6600~6720: Scer.....: CTGGAGTCTCATTCAAAGCCAACAGACTCAGTTTTTCTACAACCATGGATAAAGGCATTAATTGAAGACAACTCGGAGCATGATCAATATCATCCCTCTGGCCATGTAATTCCTAGCTTG Spar.....: CTCGAGTCTCATTCAAAGCCGGCAGACTCTGTTTTTCTACAACCATGGATAAAAGCATTAATTGAAAACAATTCGGAGCATAATCAACATCATCCTTCTGATCATGTAATTCCTATCCTG consensus: ** ***************** ******* *********************** ************ **** ********* ***** ******* **** ************* * ** 6720~6840: Scer.....: ACCAAGCAGGACTTAGCGCTACCGCATATGAGCCCGACAATTTTAACCAATCCGTGCCATTTCGCCAAAATTACAAAATTTTATAACGTTTGC-GACTACAAGGTATACGCATCGATAAG Spar.....: ACCAAGCAGGACTTGGCGCTACCGCACATGAGCCCCAAAATATTAACCAACCCATGCCACTTCGCCAAAATTACAAGATTTTATAACGTTTGC-GATTATAAGGTGTGTGCATCTATAAG consensus: ************** *********** ******** * *** ******** ** ***** **************** ******************* ** ***** * ***** ***** Spar_spli: BBBBBBB 6840~6960: Scer.....: AGATTCCTCACACCAAATACTTAGTTGAGTTTTCCCAAGAGTGTGTATCTAATTTTGAAAGGACTCATAATTGCAGGATCACATCTGAGACGACCAATTGCTTAATGATCATTGGCGATG Spar.....: AGATTCCACGCACCAAATACTTAGTTGAGTTTTCTCAAGAGTGTGTATCCAATTTTGAAAGGACTCATAATTGTAGGATCACATCTGAGACAACCAATTGCTTAATGATCATTGGCGATG consensus: ******* * ************************ ************** *********************** ***************** **************************** known....: >>= 6960~7080: Scer.....: CTGACTTAGTCTACGTAACAAATTCTCGAGCAATGTCTCACTTCAAAATTTGCCTAAGCAACATTTCGTCCAAAGAAATAGTGCCCGTTCTCAATGTAAACCAGGCCACGATATTTGATA Spar.....: CTGACTTAGTCTATGTAACAAGTACTAAAGCAATGTCTCACTTCAAAATTCGCCTAAGCAACATCTCATCCAGAGAAATAGTGCCTGTTCTTAATATCAATCAAGCCACAATATTCGATA Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTACCTGTTCTTCAAATCAATCAAGTCACGATATTTGATA consensus: ************* ******* * ** ********************** ************* ** **** ********* ** ***** * * ** ** * *** ***** **** 7080~7200: Scer.....: TTGATCAAGTCGGATCGTTAAGTACTTTCCCATTTGTATATAAATATTTATGAc-------cttctgcaggctcg-atattttataag---tgtgagagagttagaatatcttcgtttat Spar.....: TTGATCAAGTCGGATCCTTAAGTTCTTTCCCATTCGTATATAAGTATTTATGAc-------attttgtaggctca-attttttatagaatcgctgacagagttcgaatatatttgtttat Smik.....: TTGATCAAGTCGGATCCTTGAGTGCTTTCCCATTTGTATACAAATATTTATAActtttgaggtttcaaagtctcgtgtacttcatgtactacatgacaaagttcggatatattagtttat consensus: **************** ** *** ********** ***** ** ******* ** ** ** *** * ** ** *** * **** * **** ** ****** Scer_spli: DDDDDD 7200~7289: Scer.....: ----ctacatatataaagggaagggtttggaatattttaccgataagtactcctc-tagagaaacaaaaagggggttattaaact---- Spar.....: ----ttacatatataaacggaaaagtttggggagttt--acgataatcggatctg-tagtgaaagaaaaa-aggtttgtaaaatc---- Smik.....: ctagctacatacgcaaagaaaagaaattgacgggattcaccgatagtcacttctgatagtaaaccaggaaggaattattttaattttgt consensus: ****** *** ** *** ** ***** ** *** ** * ** * * ** { alias......: ['RPL2B', 'RPL5A'] chromosome.: 9 description: Ribosomal protein L2B (L5B) (rp8) (YL6) end........: 317930 exons......: [(1, 4), (405, 1165)] gene.......: RPL2B introns....: [(5, 404)] length.....: 1165 name.......: YIL018W plength....: 388 start......: 316766 tdist......: 121955 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 3 donors and 2 branches Smik: 2 donors and 3 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 655), ('Spar', 655), ('Smik', 655), ('Sbay', 655)] ->[('Scer', 919), ('Spar', 919)] ->[('Sbay', 197)] ->[('Scer', 812)] ->[('Smik', 22)] ->[('Spar', 2033)] ] [ ->[('Scer', 1039), ('Spar', 1039), ('Smik', 1039), ('Sbay', 1042)] ->[('Scer', 1304), ('Spar', 1304), ('Smik', 1304)] ->[('Smik', 415)] ] 0~120: Scer.....: atcaattgtgattccatg-aactcacaaacaa--ctcgcctaagaaactgtctaaattttt-atgcactaaataga-ccacaaatgagaacgtaaagagaagcttttatcattttatttc Spar.....: attacctataatcgcagg-accgcataaacga--c-cgcctacgaaactctctacttttct-attcactagataaaactacagatgaaaacgtacaggagacatattataattttttttt Smik.....: gtaggttattactccagg-agcgtatgaacag--c-tggccacagagccatgcagatttct-gttcactaggtagg-ctatagatgaaaacgtacaagtgac---tcattatttcttttc Sbay.....: gctagctacgacgtcaagcagtgcacaaaaaaatcctggccacgaaacaattcggttttcccactcgctagatata-atataaatgaaaacgtagataca---------tattttttctc consensus: * * ** * * * ** * * * * * * * *** * *** ** * * **** ****** * **** * * Smik_spli: DDDDDD 120~240: Scer.....: tcttctccttaggaggaaatacaaatatcttttctacatttaattcaatctgacagtcaa-agttatacatata-cattataccgattaccaagttttcagactagaacccatacattat Spar.....: gaccttctcta--aagagatggaagcaccttttctacatgtaatcgaatatgatagt-aa-agttatacatatttcattatatcgattaacaacttttcagactagcacccgtaccttat Smik.....: ---tgtctctaa-aaggaacggaaataccttttctacatttaattgaatatgacagtaaagagttctacataattcactaggtcgataactaagtcctcggactagcgcccgtacat--g Sbay.....: t-ctctctttgg-ggagaacagatgttcttcttttg-gtataattgaacatgacagcaaatgcttgta-ataat--ggtatgcctgtgttcaac-------atccgtacccccaggt--- consensus: ** * * * * ** * * **** ** *** ** ** ** ** *** ** * * ** * * *** * * Sbay_spli: DDDDDD 240~360: Scer.....: tttacaaacccagacagtacactataca-aaaacccaagcaattgcaatcaatttttttgcacgaaaattttattcgaaatcgccaacccgctagggagaaaaagaaggaattctcaaag Spar.....: catataaacccagacaatacattatttt-aaaacccaaacacctgatgtt--ttcccttgaagaaaatatgtcctcctagttgtcagctcgctcgagagaaaaagaaggaattttcaga- Smik.....: ttaaagaacccataccgta-attctgta-agcacccaaacattttttaca---cctgaagaaaattgatacttttttcaacctccagctcgctagagagaaaaaaaagaagtctcgaag- Sbay.....: --gtagaacccaaacattacactaagtgcaaaacccaagcaagcgccttttcatcattccccgaaagaaatat------agaactattctatccgaaaaaaagcgaagagttctctaag- consensus: ****** ** ** * * * ****** ** * * * *** *** * * 360~480: Scer.....: gagaggctggacagagaggtcgtcccagtctaccgccta-cgagtaatgtt-ggatactaagcagttcccagcctgaacgctctgctg--gatgggtggagatttccctccaggcgggaa Spar.....: ---agttgggacggggagatggcctcggtttccagcctaaccagtaaggcaaggacaccaaccagcttcca-ttgcaacactccgctg--ggcaggtgaacttttccctccaggcagtaa Smik.....: ----gcagagatggagagaaaggccccagtttcagcctagcccacaatgtgcagggactaaccaatttcc---tgtgaaactcacttt--gcagagcggagagcccccctcaggtaacaa Sbay.....: ----ggctgggcggagaggcaggtctg--tttgagcctagccggtagcctc-agatgccag--gatcccca-gtgagacgccctcttgctgaacggagaggtttcccttccaggcagcaa consensus: * * * *** * * ***** * * * * * ** * * * * * * * ** **** ** Smik_spli: BBBBBBB 480~600: Scer.....: cactcctggtggattctgctctggaaactatgct-gtg-catgctacaggtttcaataatctttcatacttgacaaaagtagatatacatattttaaaagattgagttactattgataa- Spar.....: ctctccaggtgggttctgctccggaaactatgcttgcgacatactgcaggtttcaataatctttcattcttgacaaaagtagatatagataaattataagattg--ttactattgttaa- Smik.....: atctctaggcggactcggcttcggaaactatgctcacagcatagtgtaggtttcaataatctttcatacttgacaaaagtagatatagataatttgtaagactgtattagtattgttac- Sbay.....: ctctctaggcggacattactctggaaactctgtttgcagcatcgtgcag-tttgaataatctttcacacttgacaaaagtagttatacatattctataagactatattgttattatcaac consensus: *** ** ** ** ******* ** * *** * ** *** ************ ************** **** *** * **** * ** **** * 600~720: total....: ====== Scer.....: atctactatttgtca-ta-aactcaccaagaaaccacaaagttattgaacaATGGGTATGTTTTTATTATATCGCATAATTATGGCAAATGTTATGAAGGATTCCTCTATGACTTAGATG Spar.....: atctgctatttatca-ta-aagataccaagaaaccacaaagttattgaacaatgggtatgtttttattatagcacacgatcatggcaacaattagaaaggactactctaagaattagatg Smik.....: atatagtattttgca-tacagatcaccaagaaaccacaaagttattaaacaatgggtatgtttctcttataatacacgatcatggcagatattggtaaagattacaattagattttgatg Sbay.....: atctgctattttcaaacaaaaattatcaagaaaccacaaagttattgaacaatgggtatgtcaatattatgatacacgattatggcagatacaaggaa-gactatcatcagaattagacg consensus: ** * ***** * * * * ******************** ************** * **** ** ** ****** ** ** * * ** ** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >================================================================ 720~840: Scer.....: TTTT-GAATCGGTACATTTTATTTTCAGTATCCTTCTGCATATTACAAG-GCAACATAG--CAGCGGACA------AGAAAGCTTTTTTGATGTTCGTCTTCGAAACGATTAC-T----A Spar.....: tttt-gaatcagtacattttattttca--acccttctacag--tacaag-gcagcatag--cagcgaaca------aggatgcttgc--aatgacagttccacaaatgattac-t----a Smik.....: tttt-gaattggtacaggctattttca--acctttctgaatatcacagg-ccaatatga--tagcgaaca------gagaaacttgc--aatgactacctcgcaaataatcac-tgtaca Sbay.....: tttttaaactggtacacttaatatttcacccttttctacataccaaaagaggaacaaagagtagcagacatcacacacgactgttacaaggtaaagactacacaccttacgatgtcctaa consensus: **** ** ***** ** ** **** * * * * * * *** *** * ** * * * * * * Scer_spli: DDDDDD known....: ======================================================================================================================== 840~960: Scer.....: TCAGGGTCTTTTAAATGCTATATCGGGACTTATTGA--AATTGACATATTACACTTA-TGAATGACGTTGGCTATCAAAGTATGAGAATAAGCCTTTCCTACTA----TTTTGTATCATG Spar.....: cgaggttcttttaaacattatatggggacttattgacaaattgtgatattacacttt-tgagtgacattggccgtttaagtatgaaaataaatccttc-tgtta----ttttgaatcata Smik.....: tcatgttcttttaaaca--gtattgggaaaggtcga------------ttacacttt-t-agtgacgctgacaatacaaacacg---atataaccctc-tgtca----ttttgaatcatg Sbay.....: acaaacccaaacgtagcgtacatgggtaatctatgaccactactgaacttttgatgaataattcacgttgacagtatacatgtgaggagaaaatatcattatttgtactttctgatcggg consensus: * * * ** ** * ** ** * * * * ** ** * * * * * * * *** *** Scer_spli: DDDDDD Spar_spli: DDDDDD known....: ======================================================================================================================== 960~1080: total....: ======= Scer.....: ACAACAGGGTTCTGT-CGCTTTGAATGCGGCCTTTTACTTTGCCATATTTTGATAATGAAAAAACTTTCGAGAAATATTTACTAACAGGATCGAGAATTTTTTTCCTCATTTAAACAGGT Spar.....: actacgaatttcaaaactctttgaatgcagtcttttaatttgccatattctggaaatgaaaaagctttcgagaaatatttactaacaatattgaaa--ttttttcctcattttaacaggt Smik.....: acagtatatttcaaaacactttcaacacgaccttttattttgccatcttttaaaattgggaaa-ctctcgagaaaaatttactaacaagatttac---tatttttcttattttttcaggt Sbay.....: atggtgcgttt-aaaacgttaagaacctg---cttcattttgctat-ttttgagaataaaaa--ttttgaagaaattttttttactaacatgaATGTTTTTTTATCTTATTTTCACAGGT consensus: * ** * * ** ** * ***** ** ** * * * ** * * ***** *** ** * ** * * *** ** **** ***** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ====================================================================================================================>= 1080~1200: Scer.....: AGAGTTATTCGTAACCAAAGAAAGGGTGCTGGTTCTATCTTCACCTCTCACACCAGATTAAGACAAGGTGCTGCCAAGTTGAGAACTTTGGACTATGCTGAACGTCATGGTTACATCCGT Spar.....: agagttattcgtaaccaaagaaagggtgctggttctatcttcacttctcacaccagattaagacaaggtgctgccaagttgagaactttggattatgctgaacgtcatggttacatccgt Smik.....: agagttattcgtaaccaaagaaagggtgctggttctatcttcacctctcacaccagattaagacaaggtgctgccaagttgagaactttggattatgctgaacgtcatgggtacatccgt Sbay.....: AGAGTTATTCGTAACCAAAGAAAGGGTGCTGGTTCTATCTTCACCTCTCACACCAGATTAAGACAAGGTGCTGCCAAGTTGAGAACTTTGGATTATGCTGAACGTCACGGTTACATCCGT consensus: ******************************************** *********************************************** ************** ** ********* 1200~1320: Scer.....: GGTATCGTTAAGCAAATTGTCCACGACTCCGGTAGAGGTGCTCCATTGGCCAAGGTTGTTTTCCGTGACCCATACAAGTACAGATTACGTGAAGAAATCTTCATTGCTAACGAAGGTGTT Spar.....: ggtatcgttaagcaaattgtccacgactccggtagaggtgctccattagccaaggttgttttccgtgacccatacaagtacagattacgtgaagaaatcttcattgctaacgaaggtgtc Smik.....: ggtatcgttaagcaaattgtccacgactccggtagaggtgctccattggccaaggttgttttccgtgacccatacaagtacagattgcgtgaagaaatcttcattgctaacgaaggtgtc Sbay.....: GGTATCGTGAAGCAAATTGTCCATGACTCCGGTAGAGGTGCTCCATTGGCCAAGGTTGTTTTCCGTGACCCATACAAGTACAGATTACGTGAAGAAATCTTCATTGCCAACGAAGGTGTC consensus: ******** ************** *********************** ************************************** ******************** *********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 1320~1440: Scer.....: CACACTGGTCAATTCATTTACGCTGGTAAAAAGGCTTCTTTGAACGTCGGTAACGTCTTGCCATTGGGTTCTGTCCCAGAAGGTACCATTGTCTCCAACGTTGAAGAAAAGCCAGGTGAC Spar.....: cacactggtcaattcatttacgccggtaagaaggcttctttgaacgtcggtaacgtcttgccattgggttccgtcccagaaggtaccattgtctccaacgttgaagaaaagccaggtgac Smik.....: cacactggtcaattcatttacgccggtaagaaggcttctttgaacgtcggtaatgttttaccattgggttccgtcccagaaggtaccattgtttccaacgttgaagaaaaacctggtgac Sbay.....: CACACTGGTCAATTCATTTACGCCGGTAAGAAGGCTTCTTTGAACGTCGGTAACGTCTTGCCATTGGGTGTCGTCCCAGAAGGTACCATTGTTTCCAACGTTGAAGAAAAACCAGGTGAC consensus: *********************** ***** *********************** ** ** ********* ******************** ***************** ** ****** 1440~1560: Scer.....: AGAGGTGCCCTAGCCAGAGCTTCTGGTAACTACGTTATCATCATTGGTCACAACCCAGATGAAAACAAAACCAGAGTCAGATTACCATCCGGTGCCAAGAAGGTTATCTCTTCTGACGCC Spar.....: agaggtgctctagccagagcttctggtaactacgttatcatcatcggtcacaacccagatgaaaacaagaccagagtcagattaccatccggtgccaagaaggttatctcttctgacgcc Smik.....: agaggtgctctagctagagcttctggtaactacgttattatcattggtcacaacccagatgaaaacaagaccagagtcagattaccatccggtgccaagaaggttatttcttctgacgct Sbay.....: AGAGGTGCTCTAGCTAGATCCTCTGGTAACTACGTTATCATCATTGGTCACAACCCAGATGAAAACAAGACCAGAGTCAGATTACCATCCGGTGCCAAGAAGGTCATTTCTTCTGATGCC consensus: ******** ***** *** * ***************** ***** *********************** *********************************** ** ******** ** 1560~1680: Scer.....: AGAGGTGTCATCGGTGTCATTGCCGGTGGTGGTAGAGTTGACAAACCATTGTTGAAGGCTGGTCGTGCTTTCCACAAGTACAGATTGAAGAGAAACTCTTGGCCAAAGACCCGTGGTGTT Spar.....: agaggtgtcatcggtgtcattgccggtggtggtagagttgacaagccattgttgaaggctggtcgtgctttccacaagtacagattgaagagaaactcttggccaaagacccgtggtgtt Smik.....: agaggtgtcattggtgtcattgccggtggtggtagagttgacaagccattgttgaaggctggtcgtgctttccacaagtacagattgaagagaaactcttggccaaagacccgtggtgtt Sbay.....: AGAGGTGTCATCGGTGTCATTGCCGGTGGTGGTAGAGTTGACAAACCATTGTTGAAGGCTGGTCGTGCTTTCCACAAGTACAGATTGAAGAGAAACTCCTGGCCAAAGACTCGTGGTGTT consensus: *********** ******************************** ***************************************************** *********** ********* 1680~1800: Scer.....: GCCATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGA Spar.....: gccATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGA Smik.....: gccATGAATCCAGTTGATCACCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATCTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAGAAGA Sbay.....: GCCATGAATCCAGTTGACCATCCTCACGGTGGTGGTAACCATCAACATATTGGTAAGGCTTCTACTATTTCTAGAGGTGCCGTTTCTGGTCAAAAGGCTGGTTTGATTGCTGCCAAAAAA consensus: ***************** ** *********************************************** ********************************************** ** * 1800~1920: Scer.....: ACCGGTTTACTACGTGGTTCTCAAAAGACCCAAGATTAAtctttttaattttggtttcttccttctgtcatattattttatcaattttctt-aaatattatata--atttaatccgaaac Spar.....: ACCGGTTTACTACGTGGTTCTCAAAAGACCCAAGATTAAtctttttagttttggtttcttccttctgtcatattattttatcaattttctttaaatattatata--atttaatccgaaac Smik.....: ACCGGTTTGCTACGTGGTTCTCAAAAGACCCAAGATTAAtctttttaattttggtttcttccttctgtcatattattttatcaattttctttaaatattacata--atttaatccgaaac Sbay.....: ACCGGTTTACTACGTGGTTCTCAAAAGACCCAAGATTAAtttctttaatcttggtttcttccttctgtcatattattttatcaattttctttaaatattatatataatttaatccgaaac consensus: ******** ******************************* * **** * ***************************************** ******** *** ************** 1920~2040: Scer.....: gttccttataaagtgatatttctatgcatacttttttttctt-tgacatgagaataaattcagccagc-------------tacttcctatcac--agaaattttagttaaacgtaagct Spar.....: gttccttataaagtgatatttccatgcatacttttttt--tt-tgacatggtgttgaatatgctcagt-------------ccctccggatcacgcagacattttagcaaagcgtatgtt Smik.....: gttccttataaagtggtattttcatgcatactttttttacat-tggtgggtagttgcttctttttggcgatgttaaatgatcgctcccactcac--agacatcaaaggaaaacgtagatg Sbay.....: gttccttataaagtgatatttccatgcatacttttttttaacatggtttcctacagtttttcttcattttggctttg-atttcccaatcctctcgaaacgttttctgtaaatcatagata consensus: *************** ***** *************** ** * * ** * * * * ** * ** Spar_spli: DDDDDD 2040~2133: Scer.....: tgcagttatggattcttctgcgaaaatactattt-a-aaaaactatagcataaattaattgtag-gaaatacta-cgagttctgtgcat---- Spar.....: tgcagttatgaatgcttctgagatagtactattt-a-gaaagctaaatcatatattttttgtag-aaattactg-cgagtctggcacac---- Smik.....: tgcagttagaaatgtttttgtaatag-agtattt-atgaaaactataccata-gctatctttaa-aaactactggtaagccaacagtat---- Sbay.....: t-cattaaaaaatatgtaagcgttgtgagcgcttcaattatatagtattcaaaattatacttgacgaacttcgactggggatattgggcacct consensus: * ** * * ** * * * ** * * * * * * ** * * * { alias......: ['RPL34B'] chromosome.: 9 description: Ribosomal protein L34B end........: 257061 exons......: [(1, 37), (510, 838)] gene.......: RPL34B introns....: [(38, 509)] length.....: 838 name.......: YIL052C plength....: 279 start......: 256224 tdist......: 182824 type.......: ORF up.........: 0 } Scer: 4 donors and 1 branches Spar: 4 donors and 1 branches Smik: 3 donors and 1 branches Sbay: 0 donors and 0 branches INTRON SPLICING FOUND!! [ ->[('Scer', 841), ('Spar', 841), ('Smik', 841)] ->[('Scer', 635), ('Spar', 635)] ->[('Scer', 691), ('Spar', 691)] ->[('Scer', 559)] ->[('Smik', 220)] ->[('Smik', 331)] ->[('Spar', 170)] ] [ ->[('Scer', 1277), ('Spar', 1277), ('Smik', 1277)] ] 0~120: Scer.....: aggattgaaacttctttactgccttttttccacttgcgataccgaggagtgtacatttataaacattttagtagcattctttagcgtatataagattttaactaagaaaagaaa---cga Spar.....: aggtttgaaac--ccttgcttgccctttttcgtctgtgatactgagaagtgtac-ttttcatacattttattagcattctttagcgtatataaga-tataactaagaaaagaaa-atgaa Smik.....: aggttttcaat--ttttccccccttcttttcacctgtagtactaaagaatatac-tttttatatatgacggtggtattctttagcctatgtaaga-tataactaagaatggcaacacaaa consensus: *** ** ** ** * * *** * ** *** * * * *** *** * * ** * * ********** *** ***** * ********** * ** * 120~240: Scer.....: atttacggagtttcagaatcagtttcttgccgttgtaga-aaatgtgaggggagtttccctctacttgtatcaatgttacaagacaggggtagaaacctattacgtgttggaacttattt Spar.....: actgacgtagtttcaaaacccgtttcttatcattgtaga-aaatgaaaaggcatgttttctttacttccaccaatgtgtcaaataagggtaggtaacctaata--taatgcaactta-tt Smik.....: agtggtgtagtttcaagaccaggctcctaacattgtgaacaaatgagaggatgatttgctttattttgctcgaatttcccagaataa----aatagtgtcgtacgtaacataagaca--- consensus: * * * ******* * * * ** * * **** * ***** * * ** * ** *** * ** * * * ** * ** * Spar_spli: DDDDDD Smik_spli: DDDDDD 240~360: Scer.....: tcttgaacactctaatcataaattct------aaaaaactgtgactgtgttttcgtcacaactttgcggtgtacagatgtcgtcacataccgtgtgttgtttgggtgttttcctttcagc Spar.....: catcatacactttaagcgtaacttctataatgaaagaacaatgactgctttttccagaagactctgtggtgtacatatctcaatatatgttatgcgcggtttgggtgttttccttccagg Smik.....: tacgagatattttaaatatatgtttca-----acgcaacttccaacaagacagtgaaactattgactgcgttttccatttaaatctgtggtgtacgtatttcatgtgtattcctgtag-- consensus: * * * *** ** ** * *** * * * * * * ** * * * * ** **** ***** Smik_spli: DDDDDD 360~480: Scer.....: tttttttttttttgaatttttgaatttttactttcatttgctttcggaggtcccgcttccgacaatagtccgcttcatttgtcccttcccatgaaagttcattc--ctttgggcagagag Spar.....: --attttttttttgaaatttt----tttactttccatttgttttcggagcttctgttcatggcattagtacgcttcattggtctcttctcggggaagtgcattcctctctgggcagagaa Smik.....: -------tgtttgggtgtttt----gtttttttttatttattttttaatatcatctacacaacggtatcgcccattat--gtcgc----caggaaacaccttcgctccctaggtagagat consensus: * *** * **** ** ** **** *** * * * ** * * * ** *** * * * ** * * * * ** ***** 480~600: Scer.....: accgtccttctgggag-gagatggaattgacgcct---gggggaggagccagt-aacaattctaactcttcctcttcctgtcagtggccccagcacc----cgttcagacggtatggtaa Spar.....: aacttccctccaggagagagatgtcattgatcttccagggaggggaagccggt-gacaat-----ctctt-ttcctcctgccagcggcctgagcaccgtctcgctcaggcggtacggtag Smik.....: aatttccttctgggaa-gaaat-tcattgatgctt--agggggagcagctggtgggcggtccc--ttcactttccccctaccggcgaccttagtagctcattactgagaccgagtcgcag consensus: * *** ** *** ** ** ***** ** ** * *** ** * * ** ** *** * * * ** ** * * * ** * * * * Scer_spli: DDDDDD 600~720: Scer.....: cgggctctcaggagccgtttcatcgcagctggtgggtaagtttggaatgtttcaatagcattctacgtaaaagttgatgaacttattagttgtaagtagtaaataacgggtagtacatag Spar.....: cgggctctcgggagccgtttcatggcagctagtgggtaagtttggaatgtttcaatggcattctacgtaaaaattgatgaacttattagttgtaagtagtaaataacgggtagtacaca- Smik.....: cgagctttcgggaactgtttcatcacttccggtggttaggcttggaatgtttcaatggcatt-tacgtaaaaattgatgaacatattagttacaattagtaaataacggttagtgtaga- consensus: ** *** ** *** * ******* * * **** ** * *************** ***** ********* ********* ******** ** ************* **** * * Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD DDDDDD 720~840: Scer.....: tatt--tggcacttgttatatt-cttttgattcaatttactttgattgaaactgagaatagattagcaacgaacaaccctaaaaATGGCTCAACGTGTTACTTTCAGAAGAAGAAATCCA Spar.....: tattagtggtacttat--tatt-cttttaattcaatttacttcgattgaaactgagaatagattagcaacgaacaaccctaaaaatggctcaacgtgttactttcagaagaagaaatcca Smik.....: tattagcggtattagttacattatcttcgttttaaattattctgtttaaacttgagattagattagcaacgaacaaccctaaaaatggctcaacgtgttactttcagaagaagaaatcca consensus: **** ** * * * *** ** ** ** *** * * ** ** ***** ************************************************************** 840~960: Scer.....: TGTATGTTACTGAACTATTTTTTTGAGTTTTCATGAAAACTTATTATGAACTTATTATGAACTTATTTTGAACTTTCATTGTGGGAAAATGAGGTTAAAAGGCGAACGAGTGCTATTTAG Spar.....: tgtatgttattaaactatttttttgagtttttataagaacttactatgaactt---------ctattgtg------------gaaaaaatgaggctaggaggcgca----------ataa Smik.....: tgtatgttattgaac-atcttttaagatttttataagaacttatcatgaact--------attgattgtgg-----------aaaaaagttaggaggaacaatgacgga----tatgcaa consensus: ********* * *** ** **** **** ** * ****** ******* *** ** *** * *** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: >====================================================================================================================== 960~1080: Scer.....: AGAAGCGTACCACTTAGAAATAGGAAGAACCAGATCATCGATAGGGGAATCAACTATGCAAGAACTTTCAAATATATT-GGCATGACATTAAAACATTAGACAG-CATGAACGAACAGTA Spar.....: acaagcatactg-gtagaggaagaatggactagattatcgaca-------cgcttatgcaagaaccttggattatcccagagatgatgttacaatattaaacag-ca-aaccgaagagta Smik.....: atgagcacactgtttagagtgaatatgaactacattatcaatgcaggagctgtctatgcagacaccctgaacaattctaag---gatattaagatattaaacagtcaaaatcgaacag-a consensus: * *** ** **** * * * ** * ** *** * ****** ** * * ** ** *** * **** **** ** * **** ** * known....: ======================================================================================================================== 1080~1200: Scer.....: TCCAGTAATGTGGACAGCAATAAGTTGACTTCAGTTTCTAAGTGGAAGACCTT-GGTCGACCCAAATGGAAAATGAATTTTTCTCCGCTGTTGAAAGATTGAAATGAGATAATATTCATT Spar.....: cctaataatgtagatagcaacaagtttgttctagcgcataagtggaaaacctcaggtcaatcaaattggtaaatgaattttac-ctggtattgcaagattgaagtaagaaaatatccact Smik.....: acaagtagtatgggagtcgagaagtcgactttattgtattcgt-gaaaaccttacgggaatgaaaacgaaatatgatttat---ctaatactccaatattgaagtaaggaaa-atatgtt consensus: * * ** * * * * * **** * * * ** *** **** * * ** * * **** ** * * * * ** ****** * ** ** ** * known....: ======================================================================================================================== 1200~1320: Scer.....: CAGCAACGCCGAAATACTTTTCATATGGAGCAA-TCCCACTCAAGTTCTTAAATCATAGGATAATAAAGAAGTG-ATTACTAACATTAATG----GGAAAATTTTCTCTTTACTACGTAC Spar.....: catcaacgccgagatactttttatatgaaacaattcccacttaagttcttgatccataagataatgaagaagtg-cttactaacataaATGAAAAAAAAAAAATTCTCTTTATTACGTAC Smik.....: taacaatactgagatgctttttattcagaacaatttaagctcaagttcttgaaccataaaattATGAATGTGTGTTTTACTAACA-AATTG---AAAACAAAACTTTTTTTATTACATAT consensus: * *** * ** ** ***** ** * *** * ** ******** * **** ** ** ** *** ********* * ** * ** * * **** *** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 1320~1440: Scer.....: AGACAACACCCGTTCTAACAAAATCAAGGTTGTTAAGACCCCAGGTGGTATCTTGCGTGCCCAACACGTTAAGAAGTTGGCTACTAGACCAAAGTGTGGTGACTGTGGTAGTGCTCTACA Spar.....: AGACAACACCCGTTCTAACAAAATCAAGGTTGTTAAAACCCCAGGTGGTATCTTGCGTGCCCAACACGTTAAGAAGTTGGCTACCAGACCAAAATGTGGTGACTGTGGTAACGCTCTACA Smik.....: AGACAACACCCGTTCTAACAAAATCAAGGTTGTTAAGACCCCAGGTGGTATCTTACGTGCCCAACATGTTAAGAAGTTGGCTACCAGACCAAAGTGTGGTGACTGTGGTAACGCGCTACA consensus: ************************************ ***************** *********** ***************** ******** **************** ** ***** known....: >= 1440~1560: Scer.....: AGGTATTTCCACTTTGAGACCAAGACAATACGCTACTGTCTCCAAGACCCACAAGACTGTTTCCAGAGCTTACGGTGGTTCCAGATGTGCCAACTGTGTCAAGGAAAGAATCGTCAGAGC Spar.....: AGGTATTTCCACTTTGAGACCAAGACAATACGCTACTGTCTCCAAGACCCACAAGACTGTTTCCAGAGCTTACGGTGGTTCCAGATGTGCCAACTGTGTCAAGGAAAGAATTGTCAGAGC Smik.....: AGGTATTTCTACTTTGAGACCAAGACAATATGCTACTGTCTCCAAGACCCATAAGACTGTTTCCAGAGCTTACGGTGGTTCCAGATGTGCCAACTGTGTCAAGGAAAGAATTGTCAGAGC consensus: ********* ******************** ******************** *********************************************************** ******** 1560~1680: Scer.....: TTTCTTGATTGAAGAACAAAAGATTGTTAAGAAGGTCGTTAAGGAACAAACTGAGGCTGCTAAGAAGTCTGAAAAGAAGTCTAAGAAATAAatttaaataagcattccttttataattac Spar.....: TTTCTTGATCGAAGAACAAAAGATTGTTAAGAAGGTTGTTAAGGAACAAACTGAAGCTGCTAAGAAGTCTGAAAAGAAGGCTAAGAAATAAatttaaataagcattccttttataattac Smik.....: TTTCTTGATCGAAGAACAAAAGATTGTTAAGAAGGTCGTCAAGGAACAAACCGAAGCTGCTAAGAAGTCAGAAAAGAAGGCTAAGAAATAAatttaaataagcattccttttataatcac consensus: ********* ************************** ** *********** ** ************** ********* ************************************* ** 1680~1800: Scer.....: tctaacttctcgtcgtactaaaaaaaaacacttttatagtaagata-taaaacaaaaacgaagattgaatcttccttttttat-ttctgtgttaaattctctaaaccagcttgatttgcg Spar.....: tttaacttctcgtcgtactaa---aaaacacttttatagtaagata-taaaacaaaaacgaagattgaatctttatatttctt-ctct-cgctaagtcttc-aattcagtttgatttgcg Smik.....: tttaacttctcgtcgtactaa-aaaaaacacttttatagtaagatagaaaaactagaacaaagattgaaccttttttttttctattccttacttagtttttctactcag-ttaatctgcg consensus: * ******************* ********************** ***** * *** ********* *** * *** * ** * * * * * *** ** ** **** 1800~1920: Scer.....: cgaaccacct--gtcacggcagatcatccgaagacgacaaagaaaaggatgcattacatcggtttaaatttttctattcgtattttataagtat---tatattatattattaagtcatgc Spar.....: cgaaccttctcaatcacagcagagcatccgaaggcgacgaagaaaagaatacattacatcggtttaaa-tttcgtattcgtattttaaatttataagtatattatattattaagtcatgc Smik.....: cgtatcgtttacactaccaagaaagatctgggg--------caaactaatgcatcataataatctgaattttagtattcgtattttataagtat---tatattatattattaagtcatgc consensus: ** * * * ** * *** * * *** ** *** * * * * ** *** ************* * *** *********************** 1920~2019: Scer.....: agatataaaattatacaattggtcggaaatggagggaaatcatacatttttatttta--tttttagcgtagtag-ttttatcaaaaaaataaaagaaaa Spar.....: agatataaaattatacaattggtcagagatggagggaaatcatacatttttatttta--tttttagcgtagtggtttttatcaaaaaaataaagaaaa- Smik.....: agatataaaattatacaattggtcgaaaatggagggaaatcatacatttttattttatttttttagcgcagtagtttttatcaaaaatagaaaa----- consensus: ************************ * ***************************** ********* *** * ************ * *** { alias......: ['RPS24B', 'RPS24EB'] chromosome.: 9 description: 40S ribosomal protein S24B end........: 232366 exons......: [(1, 3), (413, 817)] gene.......: RPS24B introns....: [(4, 412)] length.....: 817 name.......: YIL069C plength....: 272 start......: 231550 tdist......: 207519 type.......: ORF up.........: 0 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 361)] ->[('Scer', 690)] ] [ ->[('Scer', 1036)] ->[('Scer', 1965)] ] 0~120: Scer.....: cgatatacaagaaaaaaaaaaagttcactgattacatataacatagtatagttttcccttcattcgtgtattgttattatttaacaatcttatgaatatcactgctgttgacagttgatt consensus: ************************************************************************************************************************ 120~240: Scer.....: aaatctgctaaagcatcagcaataaataaggtactagctgtgccttcagtaggaatgatgtccatagacttttttttgatcaactacatctgtacatattttattcctttttcgggaaac consensus: ************************************************************************************************************************ 240~360: Scer.....: tgaataactaaaattcgaaactttctcttccgaaaaaatttccaggcagtattcccgtctagttaatcactcggaaggaaacaacgagtgaggtttcgtgtcattctctagacggagccc consensus: ************************************************************************************************************************ 360~480: Scer.....: agtgagtctacgtccgtttgggcagcctgatccttttgttagcttggtagcaatggctagctggcgcactcagttcgcgaaatttcgaaattcacggtagagagtgaccctagtcgtggc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 480~600: Scer.....: ggtaacaaccacatccactgccttgtgtgtacccatctgagtgatcccagacattctctagtgattggcctgctctttggatgtcaagcaagttagtagctaaacagttgtagtgatgag consensus: ************************************************************************************************************************ 600~720: Scer.....: acaatggcgtaagctagttgtttttcttaagccatcttattcgaagctcactgcaaacgctaaggtacctacagaagatcaataaaaATGGTATGTCGAACTTGTACTGAACCAGCAGAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================= 720~840: Scer.....: ATTGAAACAGACTGCAAGTAAGCTCTATTCCGGTTATAGCATTATGGGTGGCTGTATAAATACAATACAATCACGGGAGAAATTTCCAACAAAAAAGATCTAGTGATACGTTTGGTGCCA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: CAAGTTTAAAATACAAATTGGTTAAAGGACTTTACGGCTAAAACACAAGAATTGCAATAATGCTAATATTTATTCTGTGTATTCCTCAGTAACGTAAGATCAGCGAGAACAAATTCCCAG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: GGTTGGAAAGAATAAAAAAAAAAGTACTGCTGTAATGTTTCTGGATTATTTTTCTGATTAATTGTTCTGTTTAGATTACTAACGTATTCTGCTAAAAATGACTGGTGAGCTTTGCTTCCA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 1080~1200: Scer.....: TTCATTTTATTTTTTATAGTCTGACGCTGTCACTATTCGTACCAGAAAGGTTATCTCCAACCCATTGTTGGCCAGAAAGCAATTCGTTGTTGACGTCTTGCACCCAAACAGAGCTAATGT consensus: ************************************************************************************************************************ known....: =================>= 1200~1320: Scer.....: CTCCAAGGATGAATTACGTGAAAAATTAGCTGAAGTCTACAAGGCTGAAAAGGACGCTGTCTCCGTTTTCGGTTTCAGAACCCAATTTGGTGGTGGTAAATCTGTTGGTTTCGGTTTGGT consensus: ************************************************************************************************************************ 1320~1440: Scer.....: CTACAACTCTGTTGCCGAAGCTAAGAAGTTCGAACCAACTTACAGATTAGTCAGATACGGTTTGGCTGAAAAGGTTGAAAAGGCTTCCAGACAACAAAGAAAGCAAAAGAAGAACAGAGA consensus: ************************************************************************************************************************ 1440~1560: Scer.....: CAAGAAGATCTTTGGTACTGGTAAAAGATTGGCCAAAAAGGTTGCTCGTCGTAACGCTGATTAAgaagttctcaagtatacacatatttgtatcggttatgtccccgactattttttttt consensus: ************************************************************************************************************************ 1560~1680: Scer.....: gacgttcatcttgtcctttttatttcctcatcatcgaacccttcataatataattcatatttctatgtaggttgtacagctacgtaaacaattttttttgcataattataaagcaaaaac consensus: ************************************************************************************************************************ 1680~1800: Scer.....: ctcaaaacttcaaaaagagtaatcgtatcatgtattaagattaagaagtgggtggaagagcgaatgaatgttgttaaattattttatattactattgcgattcctgttatacacttttta consensus: ************************************************************************************************************************ 1800~1920: Scer.....: ccaatacccggcggtgcttcaattttccagtaaaataaaaccaacgcgaattggatatttagcacaacaatccggagcattttagttgatagggatcgattttgttaacacattatttta consensus: ************************************************************************************************************************ 1920~1984: Scer.....: gtaaaggttaacttcatttaccaaagatacataaactatcacatatactaacaaataacaaata consensus: **************************************************************** Scer_spli: BBBBBBB { alias......: ['MOB1'] chromosome.: 9 description: (putative) transcriptional regulator involved in mitosis end........: 167441 exons......: [(1, 20), (106, 1030)] gene.......: MOB1 introns....: [(21, 105)] length.....: 1030 name.......: YIL106W plength....: 343 start......: 166412 tdist......: 166412 type.......: ORF up.........: 1 } Scer: 6 donors and 3 branches Spar: 6 donors and 3 branches Smik: 7 donors and 2 branches Sbay: 10 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 756), ('Spar', 756), ('Smik', 756), ('Sbay', 756)] ->[('Scer', 1445), ('Spar', 1445), ('Smik', 1445), ('Sbay', 1445)] ->[('Scer', 278), ('Spar', 278), ('Smik', 278)] ->[('Scer', 358), ('Spar', 358), ('Smik', 363)] ->[('Spar', 1399), ('Smik', 1399), ('Sbay', 1399)] ->[('Sbay', 425), ('Sbay', 420)] ->[('Scer', 1459), ('Sbay', 1459)] ->[('Spar', 160), ('Smik', 160)] ->[('Sbay', 174)] ->[('Sbay', 187)] ->[('Sbay', 467)] ->[('Sbay', 1790)] ->[('Scer', 820)] ->[('Smik', 95)] ] [ ->[('Scer', 805), ('Spar', 805), ('Smik', 805), ('Sbay', 805)] ->[('Scer', 961), ('Spar', 961)] ->[('Scer', 991), ('Spar', 991)] ->[('Smik', 898)] ] 0~120: Scer.....: gagcttttattcctcttgc--ctttgttcccttgaataaacccttcttctacgcctcttgttattatttttactcttttagcttatggcacaaaagtacacaaatagatactaaaaggcg Spar.....: gagccttt-ttactcctgc--ctttgttcttttgaataaactttttttctacacctct---tattatttttactcttttagcttatggcacaaaagtacacaaatagatactagaaggcg Smik.....: gagtctttgttcctgctgctgccttgttattttgaataaactttctttctacgcctct---ttttatttt-acttttttagcttatggcacaaaagtatgcaaacagataatagaaaacg Sbay.....: tagtttttagtccttcttc---tttgctatttttagtaaactttctttctactcttta---tattttttg----atatcagcttcttgcacaaaagcacgcacgtagacaacagaaaaaa consensus: ** *** * ** * * *** * ** * ***** * ****** * * * ** *** * * ***** * ********* * ** *** * * ** Smik_spli: DDDDDD 120~240: Scer.....: aaatttatttcacttgatttacccgtaactgaatacttgagtttgt----ctatatatatat---atgtatacctttt-attgt-taaaaaaagaatatgccaacaaaatctataataaa Spar.....: aaatttatttcacttgatttacccgtaactgaatacttgagtatgt----ctatatatatat---acgtatatctttttattatctaaagaaaatacatgtcaacagttaccataagaaa Smik.....: aaagttaattcactttgtttacccgtgactgaatacttgagtatgt----ttatatatat-----acgtatacctctttaatgttgaaagaa---atatgttaacaatttctgtaagaaa Sbay.....: gaaagcaatt-attttgtttaccagtaacggaatcctttaatatgctctactatgtatgtatataatgtatgtgtatttatagtctaaaata-gtacacgcctacaaccctactactaaa consensus: ** * ** * ** ****** ** ** **** *** * * ** *** *** * * **** * ** * * *** * * * * *** ** *** Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 240~360: Scer.....: -tagtccatgtactccactataaatt-aatttgctattgtcag-taatggcgcgattaaaaataaa---taggaaaagaaatctctcctcaaaaaatctta--tgtcccctaatttccgt Spar.....: -cgatccatgtactccactataaattcaatttactattgtcag-taaaggcgcgattaaaaataaaa-ttaggaaaagaaatctctcctcaaaaaatctga--tgtcccctaaattacgt Smik.....: -tgattcatgtactccactataaatt-agtttactattgtcag-taaaggcgcgattaaaaataaaaactaggaaaagaaactcctcctcaaaaattgttt--tgtcccctaaaaatcgt Sbay.....: ataatttatgcactccactataaaat-cattaactattgtcaggtaaaggcgcgattaaaaatgaaa-acaaaaataggaatctctcctcaaaaaaaccaaattgtcccctaattgacgt consensus: * *** ************* * ** ********** *** *************** ** * ** ** ** *********** ********** *** Scer_spli: DDDDDDD DD Spar_spli: DDDDDDD DD Smik_spli: DDDDDDD 360~480: Scer.....: atgttgtgatt---ttggtattcaga-gatgatcacgtga----------------------tataaacgtg---------------attattattatcggtcgggta-tcccactcgta Spar.....: atgttgtgataa--ttcaaattcaga-aactggcacgtga----------------------tatacacgtg---------------actgttgctgtcagacgggtaataatattcgta Smik.....: acggtatgatag--tttatattcata-ta-aaccacgtga----------------------ccagcacgtg---------------ataattattgc--gtggggtaatgct-ctcgta Sbay.....: ataacatgatcaacatgctaagcacgtgaaagtcacgtggatgtatctaccaggcgggtagttaagtacgtttatagtgatattaatattcttatttctcaaagcgggtaagtcctcgta consensus: * **** * * ** * ****** **** * ** * * * ***** Scer_spli: DDDD Spar_spli: DDDD Smik_spli: DDDDDD Sbay_spli: DDDDDDDDDDD DDDDDD 480~600: Scer.....: taatatgacaaatacgttcgatc-aaaagaagggtaatactacttcccaaaatggaaatatcaaaacgttagaagaattacaattatagctttggta-------------acattactga Spar.....: ttatatgataataatattttatttaaaagaagggtaatactacttcccaaaatggaaatatcaaaacgttagaaaaattacagtaatagctgtgata-------------acattattga Smik.....: ttttatgataaatat-tcgtcttagaaagaagggtaacctaatttcccaaaaaggaaataccaaaacgttagaaaaattacaatgatagctgtagttgttagccgtaactatattactga Sbay.....: ttagatgacagg-attctaagtgcgaaaaaagggtaacgtaaattcccaaataggaaatatcaaaacgtttgaaaaactacaatgataatggcaata--------------tactagtga consensus: * **** * * * *** ******** * ******** ******* ********* *** ** **** * *** * * ** *** 600~720: Scer.....: tctaaaagagccttagctcagcccgtttgagctgtatagatattt---ttttagtttattcg-agagaaaaccggtttttttgttagtatcttcaacaaaattttccta-attcaataag Spar.....: tc-aaaagagccttagcgcagcccgtttgagttgtatggatattt---tttgaatt-atatc-agaaagaactgagtcgtttattagcatcatcaaccattttttccca-gccctataag Smik.....: ttcaagaaaagcattattctagcagcttacgttgtttaggtggttatttctaaacttgatca-gcataaacttgagttgtttgccagcatttttaaccgatttttccga-agcatctaag Sbay.....: tctaatggaggct------ggataactttcacaaaacaggtatat---ttttgatatgtttgtaaagcaggcttggttctcagcaacagttttttaccttatatttttacagcgcataaa consensus: * ** * * ** * * * * * * * * * * * ** * ** * *** 720~840: total....: ====== ======= Scer.....: gacttcaa---tttccATGTCTTTTCTACAAAATTTGTATGTTGCTATT--TTCTTTTCTACTTCAAGTATTATTGTTCATCTTTTATTAACAA-ACTGGGTATGAGTTACCTTTTGAAA Spar.....: gattacaaa--ttttcatgtcttttctacagaatttgtatgttaccatc--tttgtttttacctcatatat---tgttcatcttttattaacaa-acagggtgcaagttaccttttgaaa Smik.....: gatttcaaaagttctaatgtcctttttacaaaatttgtatgctcctatga-tttgtctttattatatctagagatgttcatcttttactaacag-acagggtattttctacctctcaaaa Sbay.....: aatttcaag--tctacatgtctttcctacaaaatttgtacgttattgtctttttgttttcatctcattcct-attgtttactttttactaacaggagaacgtgcccgttgc-tcttaaaa consensus: * * *** * ***** ** **** ******** * * * ** * * * * **** * ***** ***** * ** * * * * *** Scer_spli: DDDDDD BBBBBBB DDDDDD Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >=================================================================================== 840~960: Scer.....: GCAGTCATATAAGTCCCGGCCAAACAATAAGATCTACTAGAGGTTTCAAGTGGAATACTGCCAATGCAGCTAATAATGCAGGCTCTGTATCGCCTACTAAGGCAACTCCCCATAACAATA Spar.....: gcagtcatataagtcctggccaaacaataagatccaccaggggtttcaaatggaatactgccaatgccgctaataatacaggctctgtatcacctaccaagccaaatccccagaacaatg Smik.....: acagtcacataagtcccggtcaaacaataagatctaccagaggtttcaaatggaacactgctaacaccggtagtaacacaggctctgtaccaccttccaaggtaaatccccataacaata Sbay.....: acagtcatataagtcccggtcaaactataagatctaccagaggtttcaagtggaatacggccaatgctgctaataatacgggctctctatcaccctccaagctaaatccggataataatg consensus: ****** ******** ** ***** ******** ** ** ******** ***** ** ** ** * * ** *** * ****** ** * ** * *** ** *** * ** *** Smik_spli: BBBBBBB known....: ==>= 960~1080: Scer.....: CTATTAACGGCAATAATAATAATGCCAATACTATTAACAATAGAGCAGATTTTACAAACAATCCAGTAAACGGATATAATGAAAGCGACCATGGAAGGATGTCTCCCGTCCTCACTACGC Spar.....: atattaac---aacagcaataatgtcaatacaattaacagtaggacagatttcacaaacacaccagtaaatgaatataagggaggcgaccatggaaggATGTCTCCCATTCTTACTACGC Smik.....: atgttaac---aataataataat------------aataataaggcggaatttttcaatactccagtgaatgaatataatgaaagtgaacatggaaggATGTCCCCAATTCTTACTACGC Sbay.....: ataccaat---aatggtaataatatcaataatattagtaataggccagctttcttcaatactccagcaaacgactacaatgaaggcgatcatggaaggATGTCTCCCCTTCTTACTACAC consensus: * ** ** ****** * * ** * * ** ** * **** ** * ** ** * * * ** ************** ** * ** ***** * Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB BBBBBBB 1080~1200: Scer.....: CAAAGAGGCACGCCCCTCCGCCTGAACAATTACAAAATGTAACGGACTTTAACTATACACCATCGCATCAGAAGCCGTTTCTACAACCGCAAGCAGGTACGACAGTTACAACACATCAAG Spar.....: CAAAGAGGCACGCTCCTCCGCCTGAACAACTACAAAATGTAACGGATTTCAATTATACTCCATCGCATCAGAAGCCATTCTTACAACCACAAGCAGGTACGACAGTTACAACACATCAAG Smik.....: CAAAGAGGCACGTCGCTCCACCTGAGCAAGTACAAAATGTAACCGATTTCAATTATACTCCATCGCATCAGAAGCCGTTTCTACAACCACAAGCAGGCACTACAGTGACAACACATCAAG Sbay.....: CAAAGAGGCATGCCCCCCCACCTGAACAATTACAGAATGTAACTGATTTCAATTATACTCCATCGCATCAAAAACCATTCTTACAACCACAAGCAGGAACTACAGTAACGACACACCAAG consensus: ********** * * ** ***** *** **** ******** ** ** ** ***** *********** ** ** ** ******* ******** ** ***** ** ***** **** 1200~1320: Scer.....: ACATCAAGCAAATTGTGGAGATGACACTGGGGTCTGAGGGAGTCCTTAACCAAGCTGTGAAGTTACCGCGTGGTGAGGATGAGAATGAATGGCTAGCGGTTCATTGCGTGGATTTTTACA Spar.....: ACATCAAGCAAATTGTGGAAATGACGTTAGGATCTGAAGGAGTACTCAACCAAGCTGTGAAGTTACCGCGTGGTGAGGACGAGAATGAATGGCTAGCGGTTCATTGTGTGGATTTTTACA Smik.....: ATATCAAACAAATCGTGGAAATGACGCTAGGATCTGAAGGGGTACTCAACCAAGCTGTGAAATTACCACGTGGTGAGGATGAAAATGAATGGCTAGCAGTTCATTGTGTGGATTTTTATA Sbay.....: ATATCAAGCAGATTGTGGAAATGACGCTGGGATCTGAAGGGGTACTCAACCAAGCTGTGAAATTGCCGCGTGGTGAAGATGAAAATGAATGGCTAGCCGTTCATTGCGTAGATTTCTATA consensus: * ***** ** ** ***** ***** * ** ***** ** ** ** ************** ** ** ******** ** ** ************** ******** ** ***** ** * 1320~1440: Scer.....: ATCAGATTAATATGTTATACGGGTCCATCACAGAATTTTGCTCCCCACAAACATGCCCGAGGATGATAGCGACGAACGAATATGAATATCTTTGGGCATTTCAAAAGGGTCAGCCCCCCG Spar.....: ATCAGATTAATATGTTATACGGGTCCATCACAGAATTTTGCTCTCCACAAACATGCCCAAGGATGATAGCGACGAATGAGTATGAATATCTTTGGGCTTTTCAAAAGGGTCAGCCTCCTG Smik.....: ATCAAATAAATATGCTATACGGGTCTATCACAGAATTTTGCTCTCCACAAACATGCCCAAGAATGATAGCGACAAACGAGTATGAATATCTTTGGGCGTTTCAAAAGGGTCAACCTCCCG Sbay.....: ATCAAATTAATATGTTGTACGGGTCCATCACAGAGTTCTGTTCTCCACAAACTTGCCCCAGGATGATAGCGACGAACGAGTATGAATACCTTTGGGCTTTCCAGAAGGGCCAGCCTCCTG consensus: **** ** ****** * ******** ******** ** ** ** ******** ***** ** *********** ** ** ******** ******** ** ** ***** ** ** ** * Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1440~1560: total....: ====== Scer.....: TTTCGGTAAGTGCCCCTAAGTATGTGGAATGTTTGATGAGGTGGTGTCAAGACCAATTTGATGACGAATCTCTTTTTCCTTCCAAAGTCACCGGTACCTTCCCGGAGGGATTCATCCAAC Spar.....: TTTCAGTAAGTGCTCCCAAATATGTGGAATGTTTAATGAGATGGTGTCAAGACCAATTTGACGACGAATCACTTTTTCCCGCCAAAGTTACAGGTACCTTCCCGGAAGGATTTATCCAAC Smik.....: TTTCAGTAAGTGCCCCCAAATACGTGGAATGTTTAATGAGATGGTGTCAAGACCAATTCGATGACGAATCTCTTTTTCCCTCGAAAGTCACTGGAACGTTCCCGGAGGGATTTATCCAAC Sbay.....: TTTCAGTGAGTGCGCCCAAGTACGTGGAATGTCTAATGAGGTGGTGTCAAGACCAATTTGACGATGAATCTCTCTTCCCCTCGAAAGTAAACGGCAATTTTCCCGAGGGGTTTATTCAAC consensus: **** ** ***** ** ** ** ********* * ***** ***************** ** ** ***** ** ** ** * ***** * ** * ** ** ** ** ** ** **** Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 1560~1680: Scer.....: GAGTAATTCAACCAATTCTAAGGCGATTATTCAGAGTTTATGCGCATATTTACTGTCATCATTTTAATGAAATTCTTGAACTAAATTTACAAACCGTACTAAACACAAGTTTTAGACATT Spar.....: GAGTTATTCAGCCAATTCTAAGGCGATTATTCAGGGTTTATGCGCATATCTACTGTCACCATTTCAATGAAATCCTTGAACTGAATTTACAAACTGTACTAAATACAAGTTTTAGACATT Smik.....: GAGTTATTCAACCGATCCTTAGACGATTATTCAGAGTTTATGCGCATATCTACTGCCATCATTTCAATGAGATCCTGGAACTAAATCTACAAACAGTGTTAAATACAAGCTTCAGACATT Sbay.....: GTGTTATTCAACCTATCCTGAGGCGACTGTTCAGGGTTTATGCTCACATTTACTGCCACCATTTCAATGAGATTTTAGAACTGAATCTACAAACGGTGTTGAATACAAGTTTTAGACACT consensus: * ** ***** ** ** ** ** *** * ***** ******** ** ** ***** ** ***** ***** ** * ***** *** ******* ** * ** ***** ** ***** * 1680~1800: Scer.....: TTTGTCTTTTTGCACAAGAGTTCGAACTACTAAGACCGGCTGATTTTGGTCCGCTGTTAGAATTAGTGATGGAGTTGAGGGATAGGTAGtattgtatatttatataagtc-----tgctt Spar.....: TTTGCCTATTTGCTCAAGAGTTCGAACTACTAAGACCGGCAGATTTTGGTCCGCTGTTAGAATTAGTGATGGAGTTGAGGGATAGGTAGtgttgtatatttatatacgtc-----tactt Smik.....: TTTGCCTCTTTGCTCAAGAGTTCGAGCTACTGAGACCGGCCGATTTTGGTCCGCTGTTAGAATTAGTGATGGAATTAAGGGATAGGTAGtattgtatatttatatacgcc-----tgctt Sbay.....: TTTGCCTTTTCGCTCAAGAATTCCATCTATTAAGACCGGCCGATTTCGGCCCATTGTTAGAATTAGTGACAGAGTTAAGGGATAGGTAGtgttgtatatttatatatattgtacgtgctt consensus: **** ** ** ** ***** *** * *** * ******** ***** ** ** *************** ** ** ************* *************** * *** Sbay_spli: DDDDDD 1800~1910: Scer.....: gtaggttgtattcttccatgcatgggacacaaaaacaaaaatacggaaacatattaatataacatatggatggaaggaaataaaaacattctagtttactatacttgtat Spar.....: ataggttgttttctttcatgcatgggacacaaaaacaaaaatgcggagacatattaataaaat-tgtgaacggaaggaaataaaaacaatttagtgtaccgtatttgtat Smik.....: atacgttgctttcttccacacgcgggacataaaacaaagaatgcgagaaaatatcaatactag-tatggatagaaggaaataaaaacattttagtgtactatatttgtat Sbay.....: atatgtt--tatcttctagatatgggacacaaatc---aaattcggagaagtattaattacat-tgggggtggggacaaagaaaaactgtttaatatattatatttttat consensus: ** *** **** * ****** *** *** ** * *** *** * * * * *** ****** * ** * ** ** ** *** { alias......: ['COX5B'] chromosome.: 9 description: Cytochrome-c oxidase chain Vb end........: 155762 exons......: [(1, 1), (90, 544)] gene.......: COX5B introns....: [(2, 89)] length.....: 544 name.......: YIL111W plength....: 181 start......: 155219 tdist......: 155219 type.......: ORF up.........: 1 } Scer: 1 donors and 1 branches Spar: 0 donors and 1 branches Smik: 3 donors and 1 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 408), ('Smik', 408), ('Sbay', 408)] ->[('Sbay', 1084)] ->[('Smik', 22)] ->[('Smik', 1020)] ] [ ->[('Scer', 462), ('Spar', 462), ('Smik', 462)] ->[('Sbay', 1191)] ] 0~120: Scer.....: aacaattcatcggtccgttggcatatgctcatacatagttgcattttcga-ttcattaaatactattcatgttaacataattccatataatcgtactgttttgtcattattat------- Spar.....: aacggttcgcagatccattggcatatgttcatacatatttccgttctgga-tgcattaaatattattcacgttaatatatttccacgcaattgtactattttgttattattatt------ Smik.....: agagatttatcgacttactggtgcatgtctatacacacttctgttttcca-tacatcagttattgtttacgttcatgtg--tctgcacaattgtactattttgttattattattattatt Sbay.....: ------accctcatctattcgctcccactcatttatacttacgttttccaatgcattagatattattttaatttatatatcttcacccagttgtaatattttat-atcattatcgg---t consensus: * * ** * * ** ** * * * *** * ** * ** ** * * * * * *** * **** * ** ***** Smik_spli: DDDDDD 120~240: Scer.....: atcggcatgacactcaccaatttctttttttgatttt----gtattgttcgataaggcaacgaacgagtactcgaaaaaatgtcatggaccccttaaaattac-tgaggggttcagaaaa Spar.....: attattatcagtattat--attcatcatttt--tttt----ctattgttcgataacgta-------------------tatgtcatggaccccttgaatttac-tgaggggttcagaaaa Smik.....: attattattattattaccgatttttatattcagtttttttcctattatttgatatatgactag--tgcttgaaaagtatttgtcaaaaaccccttaaaaatgcctgaggggtttagaaaa Sbay.....: actctcattgctaccac--aagaatattttc------------attgtgcgacaaaaca-------------------tccttgaccggcccct-gaaatcgc-cgagtagctcagaaaa consensus: * ** * * * ** *** * ** * * * * ***** ** * *** * * ****** 240~360: Scer.....: taccgtgcaaaagacgaaaaa-agacgaat-ttcatttgatttata-ttttataaatgactgttgcattaaacaatagaccaattatttc--aatttaatattctttgcag--------- Spar.....: taccgtgcaaaagacgaaaaatggacgaat-ttcctcaagtataaa-atttataaattactgttgcattgaacaatag-ccagttatttc--tttttaatattccttgcag--------- Smik.....: taccgtgcaaaagacgaaaaacaatagagtattccttaaataagaagccttatatattattgttgcatcaaacaataggttcattattcccttttttattattccttgcag--------- Sbay.....: taccgtggaagagatgaaagacaatagatctttttttaatttttaa--tctatatattactgct---ttaaacaataggcctattgtttc-tttcttgat-ttctttgcagctaccttaa consensus: ******* ** *** **** * ** ** * * * **** ** * ** * * ******** ** ** * ** * *** ****** 360~480: Scer.....: -----gaaactttcacaatggaataacgccacatattcattgtaaagAGCATGTATAACAAACACT-GATTTTTGTTTTGAGTTTTA-AA-AGATATCCATTTACTAACATTCGAGGT-G Spar.....: -----gaaatttctacaatggaataacgtcatagattcatcacaaa-agcacgtataacaagtattcaatttatgttttgaattgtg-aagagatgtccatttactaacattcgaggt-g Smik.....: -----gaaatatctacaatgggataacgtcatagattcactacgaaaagtatgtgta--aattgcttagttcat-tttcgactagtgcaagtattatttgtttactaacgt-cagggt-t Sbay.....: tcatggaagtttctacaatacaatatcatcttacactcaaaacaaa-agtatgtata-caatagctacgtttttga--aggaatgtataaaagaaattc-tttactgacactcaaggaag consensus: *** * ***** *** * * * * *** ** ** * ** ** ** * ** * * * ** * ****** ** * ** Scer_spli: DDDDDD BBBBBBB Spar_spli: BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD known....: >======================================================================= 480~600: Scer.....: TACAAGCACAAGTTTTGCAGTGTTGCGTACTTCTCTTACTAAAGGGGCACGGCTAACTGGGACAAGATTTGTTCAAACAAAGGCCCTTTCGAAGGCAACATTGACAGATCTGCCCGAAAG Spar.....: tataagcaccggttt-gcagtgttacgtacttcttttaccaatggggtgcggctaactgggacaagattcgttcaaacaaaagccctttctaaagcgacattgacagatctgccagaaag Smik.....: tacaaaaaccagttt-gcagtgttgcgtacttcttttgtcaatgggacacggctaattggaacaagatttattcaaacaaaggctctttctaaagcagcattgacagatttgcccgaaag Sbay.....: tttaaccacaagctt-acagtgttgcgtatttcctttagtaatgtggaaagaataggtggagcacggtttgttcagacaaaagctctttccaacgcagcattggctgacctacccaaaag consensus: * ** ** * ** ******* **** *** ** ** * * * ** *** ** * ** **** ***** ** ***** ** ** ***** * ** * ** **** known....: ==================>= 600~720: Scer.....: ATGGGAAAATATGCCAAACTTAGAACAGAAAGAGATTGCAGATAATTTGACAGAACGTCAAAAGCTTCCATGGAAAACTCTCAATAACGAGGAAATCAAAGCAGCTTGGTACATATCCTA Spar.....: atgggaaaacATGCCAAACTTAGAACAGAAAGAGATTGCAGATAACTTGATAGAACGTCAAAAGCTTCCTTGGAAAACCCTTAATAACGAGGAAATTAAAGCGGCTTGGTATATATCGTA Smik.....: atgggaaaatATGCCAAACTTGGAACAGAAAGAGATTGCTGATAACTTAATAGAACGTCAAAAGCTTCCCTGGAAAAGCCTTAATAAGGATGAAATTAAAGCGGCCTGGTATATATCTTA Sbay.....: gtgggaaaatATGCCTAGTTTAGAACAACAAGATATTGCTGATAATTTAATGGAGCGTCAAAAGCTTCCCTGGAAGAAATTAAATAGCGGTGAAATAAAAGCTGCTTGGCATATATCTTA consensus: ******** ***** * ** ***** **** ***** ***** ** * ** ************** ***** * * **** * ***** ***** ** *** * ***** ** 720~840: Scer.....: CGGCGAGTGGGGACCTAGAAGACCTGTACACGGAAAAGGCGATGTTGCATTTATAACTAAAGGAGTATTTTTAGGGTTAGGAATCTCATTTGGGCTCTTTGGTTTAGTGAGACTATTAGC Spar.....: TGGCGAATGGGGGCCTAGAAGACCTGTACACGGAAAAGGCGATGTTGCATTTATAACCAAGGGGGTTTTTTTGGGGCTGGGAATTTCATTCGGCCTCTTTGGTTTGGTAAGACTACTGGC Smik.....: TGGTGAATGGGGACCTAGGAGACCCGTGCATGGTAAAGGTGATGTTGCGTTTATAACTAAAGGGGTTTTTCTAGGGTTAGGAATCTCGTTTGGCCTCTTTGCTTTGGTAAGATTATTAGC Sbay.....: TGGTGAATGGGGACCCAGAAGGGCTGTGCATGGAGGGGGTGACGTTGAGTTTATTACCAAGGGAGTTTTTTGGGGGTTGGGCATCTCCTTGGGTCTTTTCAGTTTAATAAGATTATTGGC consensus: ** ** ***** ** ** ** * ** ** ** ** ** **** ***** ** ** ** ** *** *** * ** ** ** ** ** ** ** *** * *** ** * ** 840~960: Scer.....: CAATCCTGAAACTCCAAAGACTATGAACAGGGAATGGCAGTTGAAATCAGACGAGTATCTGAAGTCAAAAAATGCCAATCCTTGGGGAGGTTATTCTCAAGTTCAATCTAAATAAgtaga Spar.....: TAATCCTGAAACTCCAAAGACCATGAACAGAGAATGGCAGTTAAAGTCAGATGAGTATCTGAAGTCAAAAAATGCTAATCCTTGGGGAGGTTATTCTCAAGTTCAATCTAAATAAgtaga Smik.....: TAACCCTGAGACCGCAAAAACCATGAACAGGGAATGGCAATTGAAATCAGACGAATATTTGAAGTCCAAAAATGCGAATCCATGGGGAGGTTATTCTCAAGTTCAATCTAAATAAgtaga Sbay.....: TAACCCCGATCCTCCAAAGACAATGAACAGAGAATGGCAATTGAAGTCCGATGAATATTTAAAATCAAAAAACGCTAATCCATGGGGCGGTTATTCTCAAGTTCAATCTAAATAAataga consensus: ** ** ** * **** ** ******** ******** ** ** ** ** ** *** * ** ** ***** ** ***** ***** *************************** **** 960~1080: Scer.....: cgaggaaaataaaattgtttcgtatattccgtgtttggggtata-agtagattgttttca----tatatacgca-tt--------tggtc-----ttagt--tcagtaggttgatt---a Spar.....: cgaggaaaatataattgtttcatatattccgtacttggggtata-ggtagattgttttca----tatatacgcaatt--------tgatc-----ttagt--tcagtagtttgattt--a Smik.....: caaaatgaataacattatctcatatatttcatgttcggggtgta-ataaaatgatttttag---tatgtatagatccgtaggcgatgcat-----ttatc--ttaatactttgttttaga Sbay.....: ctaaaaagataaaattgtctcataaaatccatgtattgggcgcagaacatatagttttcatttgtatacatctacttctcttatctagttgcgcattcgtgatcgatcgtttgtttaaag consensus: * * *** *** * ** ** * * * * *** * * ** **** * *** * * * ** * * *** ** Smik_spli: DDDDDDDDD 1080~1200: Scer.....: cttagttccttgtacc-ttcttctgcaaata--tcat-tcattgttacttcgaagaagaaaaaaaataatcatggaaaattggaaaaaaaa--aaagtccaatctaaaaaataaaaatgt Spar.....: ctcgattctttgtagcatttttcagcaaaca--cga-----tcactgcctcgaaggaaaaaaaaatcga------------agtgaaaaat--acaatccaa---aaaaagaaaaagtgc Smik.....: gttacttgtttttatggagcttcaaaatatgatcgat-gtgatgataccttgaaaaaaaaataaacctaaa----------agtgaaaaat--tgattccaa----agaaaaaaaaat-- Sbay.....: atcagttcgtggtctggtgactactttcactcgctatattactgtcatcttgaaatacacgattctgatatacgtcttctctgaaaaaaatgaaaattttgaaaaatgaaaaactaacgt consensus: * ** * * * * * * *** * * * ***** * * * ** * * Sbay_spli: DDDDDD BBBBBBB 1200~1299: Scer.....: tcaagtcat-cgattctatggggaggaaaaggacaatcagaacc------gaagtgttgtgtagctaaaat---------------------------- Spar.....: ataagtcat-cgattttatggagaaagagaagatggtcagaacc------gaagcattgtgtcactaaagt---------------------------- Smik.....: tcaaatcat-cggttt-------aagaaaaagagagcta-agct------gaagttctgtgtagctgaaaa---------------------------- Sbay.....: tgaaaaaaagtgctcttaaatagtatagtcatcgaattaatacacatttggaactagtgcggaaatacaacgactaggacttaatttaccgcccaagac consensus: ** * * * * * *** ** * * * { alias......: ['RPL16A', 'RPL13'] chromosome.: 9 description: Ribosomal protein L16A (L21A) (rp22) (YL15) end........: 99416 exons......: [(1, 31), (322, 890)] gene.......: RPL16A introns....: [(32, 321)] length.....: 890 name.......: YIL133C plength....: 296 start......: 98527 tdist......: 98527 type.......: ORF up.........: 0 } Scer: 2 donors and 1 branches Spar: 2 donors and 2 branches Smik: 6 donors and 2 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 509), ('Spar', 509), ('Smik', 509), ('Sbay', 509)] ->[('Scer', 1203), ('Spar', 1203), ('Smik', 1203)] ->[('Sbay', 290)] ->[('Sbay', 584)] ->[('Sbay', 604)] ->[('Sbay', 1545)] ->[('Smik', 264)] ->[('Smik', 416)] ->[('Smik', 430)] ->[('Smik', 921)] ] [ ->[('Scer', 753), ('Spar', 753), ('Smik', 753), ('Sbay', 753)] ->[('Spar', 1327), ('Smik', 1333)] ] 0~120: Scer.....: ---------------ctacataag-tgcaatta--aagcatcggtacaccatgtaacaccagtaca-tttattcatgaaacattaaa-t-ttttctgcgtcgggccgagagattattttc Spar.....: ---------------ctacatgcg-tacattta--aagcatcggtacaccctaatacacctgtaca--ttatttatggaatattgaatt-ttttccgcgtcgggccgagagaattagttt Smik.....: ---------------ttttataagatgacctcaccaagcatctgtacacctactagcacctgtacattttatttgaaatatatgaatta-ttttccgcgtcgcgccgtgtacgatggttt Sbay.....: aagcaacttaaatgactgcttta--tgaaattg--aaacatcggtacaccc-gaagaacctgtaca---tattcaagagctcttgaattgtatttcgcgtcctatcggaagcgttggccc consensus: * * * * ** **** ******* *** ***** **** * * * ** ***** ** 120~240: Scer.....: atgatacttcggcctag--ctatgctcctacgcccgccaatgcagaacaaatcctgcccgggaaaactaccccgatgctagacttctccctctgtatccatgcccggcaac-agaga-cc Spar.....: actatacttcggcttgggtctgggcagctacatcgattcaggaagaaattgttctgcctgggcaaactaccttcatgatacacttcccctccggcgtccatgcccggcagc-agagagcc Smik.....: attgtaatatggcctgaggttaggccattagatcgttctaggaaaaatatgttctgcctggaccgactacctttacgcgaaacttctgctcctgtattcatactggactgctagtgggcc Sbay.....: gctgtgct-cggccgggggttaggcgcattcaataatccagacagagcaaatcctgtctgggcgaataattcccgggctgggtttctgttcgcagacccgagctgggaacggcgagagtc consensus: * * *** * ** * * * * * *** * ** * * * *** * * * * * * 240~360: Scer.....: cttggctaagcccgatgcgcaatagtac-ctgtagt-gca--ctccccgagcttatgcctgagaatatgctattgcaatgggtcaatgtaggtactgcaggga-aattcaatcttgggct Spar.....: cttcgccaaacccgatgggtaattgtgc-cagtagtaaaa--ctctccaagcttatgcctgagaatctgctattgcaatgggtcaatgtaggttgtgcaggac-agttcaatcttgggct Smik.....: tctctcccggccttctagccaattgtatgtagtagtgaaaccctctctaagcacaagcctgagaatctgctattgcaatgggtcaacgtaggttgtgcaggga-cgggcaatcttgggct Sbay.....: -tactccaggctcattgcgcaactgtag-tggtagggaaa---tctccaagcatgtgcttggaaatttactattgcaatgggccaacgtagattgtacaggaataggtcaattttgggct consensus: * * * ** ** **** * ** * *** ** ** *** * ************* *** **** * * **** **** ******* Smik_spli: DDDDDD Sbay_spli: DDDDDD 360~480: Scer.....: gctgtgtaataataattaaattagcaatttagtaatcacactgta-taattgcacgctatcgttatacatat-tatttctct--ttgaaaacggaaggtgaagaacaaatcgag-aaaAT Spar.....: gctgtg---taataattatattagccatttagtaactacacaatattatttgcactatatctttatacgttt-tatttttcttgttgaagacgtaaggtgaagaacaaatcgagaaaaat Smik.....: gctacgtagtagtaattatattcatcatttactaagtataatatattgattgcagtgtatgattgaacatg--tatgttttatcttgaagacataaggtgaagaacaaatcgag-aagat Sbay.....: atcatg---taataattatattagccatttactacgtacatcatattaattgcattacactaatattcatttgtattttttcttttgaagacagaaggtgaagaatcaatcgag-aaaat consensus: * ** ****** *** ***** ** * * ** * ***** * * * * *** * * ***** ** *********** ******* ** ** Smik_spli: DDDDDD DDDDDDDD 480~600: total....: ====== Scer.....: GTCTGTTGAACCAGTTGTTGTCATTGATGGTACGTAAGATTTTGCACTAATAATTGAATGTGTTTTCCTTT-CCCAGCCGCAGGATTTGCTCATAGTGCACAGCGTTTACGA-GT--CCC Spar.....: gtctgttgaaccagttgttgtaattgatggtacgtaacattttgcactaataattgaatgtg--ttctttc-cccagccacaagatcagtttatagtacacagcatttacaattt--ccc Smik.....: gtctgttgaaccagttgttgtcattgatggtacgtaacatttatca-aatttattgagtgttttttcctttgtccaaccacgagattggtccatagttcaaaccatatacaattccaccc Sbay.....: gtctgttgaaccagttgttgtcattgatggtacgttagatttttta-tttttattgagtgtg--ttccttcctcccacttcatggtctattt-tattacacaatgtatg-aatct--ccc consensus: ********************* ************* * **** * * ***** *** *** ** ** * * * * ** * ** * * * * *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDDD known....: >========================================================================================== 600~720: Scer.....: CAAGGAATATGATAAAAATATTACA---GCCG-CAGAAGGGTGGAATACAGAAGGGTCTTCGTAGATTGTGTATAC-GCTAAAACATGGAGATAGAGA---GAGATGGGAATTATGAACG Spar.....: ccaaaaatgtgacaaaaatattata---accg-aaggagaa-gagatatactgagggcttagtagatcatgtgcac-gttaaaacataaagattgagacacaagattgaaatcatgagca Smik.....: ctcagaagatattaaagatattttacacacta-gaagaaggagaggtgaactgagtacccaacagaatgtgtacactcccaaagcacggagatggacc-gcaagatggaagtcatgagca Sbay.....: cagggtatgatataaaaccgtcaacggaaccataaaaagagaaagatttctcgaaaacctgatagaatacatgcat-gctgaaacctggaggtatcat-ataaaatggaggcagtagaaa consensus: * * *** * * * * * * *** * * ** * ** * * ** * * Sbay_spli: DDDDDD known....: ======================================================================================================================== 720~840: total....: ======= Scer.....: GGAAAAACA----GGTTTTATTTAAAGGA-TAATACTAACAAATCCA-T--TTTTTTGAATGAGCATCCATTCATTCATCAATAATAATCTTCAACCAGGTAAGGGTCATTTAGTAGGTC Spar.....: ggaagaacat-aggtttttttttaaaggagtattactaacgaatccatt--ttttttgaATGAGTATCTATTCATTCATCAATAATAATCTTCAACCAGGTAAGGGTCATTTAGTAGGTC Smik.....: ggaagaacgt-acgcttttttttgtaggatcattactaacaaatttatttattttttgaatgag----tattcattcataaatgataatctttgatcaggtaagggtcatttagtaggtc Sbay.....: ggaatcacatcgctgttttttccaaaggcgttttactaacagacctatt--ttttttggatgaatgaatattcattcatcaataatgaattttaatcaggtaagggtcatttagtaggtc consensus: **** ** **** * *** ******* * * * ******* **** ********** *** ** * ** * ************************ Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =================================================================================================>= 840~960: Scer.....: GTTTAGCTTCCGTTGTTGCTAAGCAATTATTAAACGGTCAAAAAATCGTTGTTGTTAGAGCTGAAGAATTAAACATTTCTGGTGAATTTTTCAGAAACAAATTAAAGTACCATGATTTCT Spar.....: GTTTAGCTTCCGTTGTTGCTAAGCAATTATTAAACGGTCAAAAAATCGTTGTTGTTAGAGCTGAAGAATTAAACATCTCTGGTGAATTTTTCAGAAACAAATTAAAGTACCATGATTTCT Smik.....: gtttagcttccgttgttgctaaacaattgttaaacggtcaaaaaattgttattgttagagctgaagagttaaacatttctggtgagtttttcagaaacaaattaaagtaccatgatttct Sbay.....: gtttagcttccgttgttgctaaacaattattaaacggtcaaaaaatcgttgttgttagagctgaagaattgaacatctctggtgaatttttcagaaacaaattaaagtaccatgacttct consensus: ********************** ***** ***************** *** **************** ** ***** ******** ***************************** **** Smik_spli: DDDDDD 960~1080: Scer.....: TGAGAAAGGCTACCGCTTTCAATAAGACCCGTGGTCCATTCCATTTCAGAGCCCCATCTAGAATCTTCTACAAAGCTCTTCGTGGTATGGTTTCTCACAAGACTGCTCGTGGTAAGGCCG Spar.....: TGAGAAAGGCTACTGCTTTCAACAAGACCCGTGGTCCATTCCATTTCAGAGCCCCATCTAGAATCTTCTACAAAGCTCTTCGTGGTATGGTTTCTCACAAGACTGCTCGTGGTAAGGCCG Smik.....: tgagaaaggctactgctttcaacaagacccgtggtccattccactttagagccccatctagaatcttctacaaggctcttcgtggtATGGTTTCCCACAAGACAGCTCGTGGTAAGGCTG Sbay.....: taagaaaggctactcgtttcaacaagacccgtggtccattccatttcagagctccatctagaatcttctacaaagctcttcgtggtATGGTTTCTCACAAGACTGCTCGTGGTAAGGCTG consensus: * *********** ****** ******************** ** ***** ******************** ******************** ******** ************** * 1080~1200: Scer.....: CTTTGGAACGTTTAAAGGTCTTTGAAGGTATCCCACCTCCATACGATAAGAAGAAGAGAGTTGTTGTCCCACAAGCATTGAGAGTTTTGAGATTGAAGCCAGGTAGAAAGTACACCACCT Spar.....: CCTTGGAACGTTTAAAGGTCTTTGAAGGTATCCCACCTCCATATGATAAGAAGAAGAGAGTTGTTGTCCCACAAGCATTGAGAGTTTTGAGATTGAAGCCAGGTAGAAAGTACACCACCT Smik.....: CCTTAGAACGTTTAAAGGTTTTCGAGGGTATCCCACCTCCATATGATAAGAAGAAGAGAGTTGTTGTTCCACAAGCATTAAGAGTTTTGAGATTGAAGCCAGGTAGAAAATACACTACTT Sbay.....: CCTTGGAACGTTTAAAGGTCTTCGAAGGTATCCCACCTCCATATGACAAGAAGAAGAGAGTTGTTGTCCCACAAGCATTGAGAGTTTTAAGATTAAAACCAGGTAGAAAGTACACTACTT consensus: * ** ************** ** ** ***************** ** ******************** *********** ******** ***** ** *********** ***** ** * 1200~1320: Scer.....: TGGGTAAGTTGTCTACTTCCGTTGGTTGGAAATACGAAGATGTTGTTGCCAAATTGGAAGCAAAGAGAAAGGTTTCATCCGCTGAATACTATGCCAAGAAGAGAGCTTTCACCAAGAAAG Spar.....: TGGGTAAGTTGTCTACTTCCGTTGGTTGGAAATACGAAGATGTTGTTGCTAAATTGGAAGCAAAGAGAAAGGTTTCATCTGCTGAATACTATGCCAAGAAGAGAGCTTTCACCAAGAAGG Smik.....: TAGGTAAGTTATCTACTTCCGTTGGTTGGAAATACGAAGATGTTGTTGCTAAATTGGAAGCAAAGAGAAAGGTTTCATCTGCCGAATACTATGCCAAGAAGAGGGCTTTCACCAAGAAGG Sbay.....: TAGCTAAATTATCCTCTTCTGTTGGTTGGAAATACGAAGATATTGTTGCTAAATTGGAAGCTAAGAGAAAGGTTTCATCAGCTGAATACTACGCTAAGAAGAGAGCTTTCACCAAGAAGG consensus: * * *** ** ** **** ********************* ******* *********** ***************** ** ******** ** ******** ************** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 1320~1440: Scer.....: TTGCCTCTGCTAATGCTACTGCTGCTGAATCTGATGTTGCTAAACAATTAGCCGCTTTGGGTTACTAAgaaattaaaaatagtttttctttaatactttacattttgtaatataatcaca Spar.....: TCGCCTCTGCTAACGCTACCGCTGCTGAATCTGATGTTGCTAAACAATTAGCTGCTTTGGGTTACTAAgaaatttaaaatagtttttctttaatactttacattttgtaatataatcaca Smik.....: TCACCTCTGCTAATGCTAACGCTGCTGAATCTGATGTTGCTAAACAATTAGCTGCTCTAGGTTACTAAgaaatttagaatagtttttctttaatactttacattttgtaatataatcaca Sbay.....: TCACCTCTGCTAATGCTACCGTTGCTGAATCTGATGTTGCTAAACAATTAGCTGCTTTGGGTTACTAAaaaattttaaaatagttttctttaacactttacattttgtaatataatcaca consensus: * ********** **** * ****************************** *** * ********* ***** ** ********** ************************** Spar_spli: BBBBBBB Smik_spli: BBBBBBB 1440~1560: Scer.....: aatattttttagaaataat-aaaaaccaaagaaaccattcct-ccccgttacagtttagattacctcccctttttctttc-gtactttttatatt--tttatcgtttgatatttacaaga Spar.....: gatattttttagaaataataaaaaaccgaagaaaccatccctccccctttactatttaaattatctttcttttttttccctatattttctatttttgtttatcctttgatatttacaaga Smik.....: aatattttccagaaataat-taaaataaaataaaaaaaaccg-tccctccacaactt-------------cttttctctc--tatttttcattct--tctatctttcggtatttacacgg Sbay.....: aatattttttagaaataataaaaaacca---aaaccatccct-cacagtatcctcttatcaagtttgtcatttttttcttctttatattcacaaaagtgtgttat---gtacgtatataa consensus: ******* ********* **** *** * ** * * ** **** * * * * * * * * * ** ** * Sbay_spli: DDDDDDDDD 1560~1590: Scer.....: aattaaatctatcat-atagcctttattta Spar.....: aactaaatttataat-atacgcttta---- Smik.....: aactaaacttagtataatatgctcca---- Sbay.....: tattacgcccg------------------- consensus: * ** { alias......: ['RPL40A', 'CEP52A'] chromosome.: 9 description: Ribosomal protein L40A end........: 69528 exons......: [(1, 8), (443, 821)] gene.......: RPL40A introns....: [(9, 442)] length.....: 821 name.......: YIL148W plength....: 273 start......: 68708 tdist......: 68708 type.......: ORF up.........: 1 } Scer: 2 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 2 donors and 2 branches [ ->[('Scer', 681), ('Sbay', 681)] ->[('Sbay', 1002)] ->[('Scer', 1435)] ] [ ->[('Scer', 1108), ('Sbay', 1108)] ->[('Sbay', 188)] ] 0~120: Scer.....: tgccggtttgcttccgcccagtgttctttcgccttaaatttcttttggtaaacttccactagaaaaagaaaagccaccagagaaataagcgcttgcaatttaacgccgatattgttttct Sbay.....: --tatttttaagaatagtcgattttgctcagtatattctcgcctttaacgaccgtctcctagaaaaaagcaagcccc---aataataagtgtctgtcacta------ggtatcacctt-- consensus: *** * * ** * * * * * *** * * ** ********* ***** * * ****** * ** * * * *** ** 120~240: Scer.....: tcttctattatcttcaattatcgatcaactctatccaacaattctataatatccactgttcatta-acgaatattggt-ctttttcccttatggtgaagtaaattttccatgcaata--- Sbay.....: ---tctgttgttttcaattctcaatcggcgttttccaatgatttccaaatactgaatactgaatacactactaatagtgccttttcccttata-tggcgtaaatttttcaagaaacaaag consensus: *** ** * ******* ** *** * * ***** *** **** * * * * ** ** * ** * ** * *********** ** ********* ** * ** * Sbay_spli: BBBBBBB 240~360: Scer.....: --tccgggtaagctatcgacaagtttattgactgcaatttgagtttattacatccgtacattactaag---atgtatggtttttctatttttgtgctcc-------------gtgtcgat Sbay.....: actccgtccgggttatatatttttttaaaatccaaaagttgaagtttttgaatccgtacattaactggtgtatgggtgcttttattttttttatcatcttcttcattcgcctgttttgaa consensus: **** * *** * **** * ** **** ** ** ************ * *** ** **** * ***** * ** ** * ** 360~480: Scer.....: atttcgtggagcaaaccagaaaagatgcggaacctcttagcactcc-gcctggacataggcggagcatattcctcctatgggatgggttttg-ttgtactcttttctctctagacaggac Sbay.....: gtttcgttgcccatgcctgtaaggacgcacagtcttggtgcgcttctgcctagaggtaggcagaggattctccctcttgacagtggaagcaggctgaataattctatctccaggcagctt consensus: ****** * ** ** * ** ** ** * ** ** ** * **** ** ***** *** ** *** ** *** * ** * ** * **** ** *** 480~600: Scer.....: ctccgattgcctc-cctgagggtgagatggtttccggcctcaggacggccttctccagtttctagcgaggcatacattccaaccaaaggtgtatcaagaatatctgaaattaaaggtagt Sbay.....: tcttgtttctcccgcctgagggaaaggcggct----------------ccttctcca---tccagtaaggtaagcattgctaaggaatcggtatcaacaatttcagaaattaaaggtagt consensus: * ** * * ******** ** ** * ********* ** ** *** * **** * * ** ******* *** ** *************** 600~720: Scer.....: tgaatctctatttgttg-------ttgttattaccgcttattatcccatagttgagacgaccaagattcaaacATGCAAATGTATGCACCATATCCATTCTAAACATAGTTTTTCGAACG Sbay.....: tgaaggtctatttcgtaactgcatttaacattgttgattattagtgcaatattaagacgaccaagattcaaacatgcaaatgtatgcacaatatccatttcagatatagattttcaaacg consensus: **** ******* * ** *** * ****** ** ** *********************************** ********* * * **** ***** **** Scer_spli: DDDDDD Sbay_spli: DDDDDD known....: >====================================== 720~840: Scer.....: TTCAGAGCTTAAAGGGACAATTATTTTAGAAACTGAATTTTTACCCA-GTGGAATAACATCGTATCT---------------GTAAAGTCTACAAAATTTTTTAT--CCATCAAAAATTA Sbay.....: ttcactagacaaggagacaattatttatgagattaaagttttgaccatgtggaaggacgtcttccccccccccagatcctgaattaaatttgagaaagtttacatgcccaacaatagcta consensus: **** ** * *********** ** * * ** **** *** ****** ** ** * * * ** * * *** *** ** *** *** * ** known....: ======================================================================================================================== 840~960: Scer.....: AA-ACAAAGAAAA----CTGCCAAA--CTGAATATGAGGAACTTTCCTCTCTAGGAATGACTTAGTGAATGTACAGTGACTTGTGGAAA---ATATGATTAGATTTTGAGCGGGTGATG- Sbay.....: gagataaaggaaaggagtcgccagtgtttggatgtgacgtgctccttttaagaggaatc-ttgagcgaacatatgatatggaaggtaaaccaatataataaaagaataataatacacttt consensus: * * **** *** **** ** ** *** * ** * ****** * ** *** ** * * *** **** ** * * * * * known....: ======================================================================================================================== 960~1080: Scer.....: CGACTTAACAGTCTCATTGCCTAAGAAATATCCAAATTTGTGGTTCATGCTCTCCCCCAA-GATATGACGA----TGAGAGCTCGTTTAAAATTTTGTCTTCTTCCGAACAGTTATGAAA Sbay.....: caaatctgtgatacaaacacatcataatggcaatggatgggggcatgtaatgtccgccagcgaaaagacgacgcttgcgggttcatctaaatttttgtttcctctctgaatgtct----g consensus: * * * * * * * * ** * * ** * * *** *** ** * ***** ** * * ** * **** ****** * ** * * ** Sbay_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: Scer.....: AAACTATTACGTGTTTTTATGATATCCTTACTAACTT--GTCATTTT--TTTATAAAATTATTTTTTT-AACAGTTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAA Sbay.....: atactattatatttcccgATGAAATTTTTACTAACTTTTATCATTTTGTTTTTTAACATTATTTCTTTCGACAGTTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAA consensus: * ******* * * **** ** ********** ******* *** *** ******* *** ************* ************************************ Scer_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ========================================================================>= 1200~1320: Scer.....: TCTTCTGACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGAC Sbay.....: TCTTCTGACACTATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGAC consensus: ******************************************************** ***************** ********************************************* 1320~1440: Scer.....: TACAACATTCAAAAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTATCATTGAACCATCTTTGAAAGCTTTGGCTTCCAAGTACAACTGTGACAAATCTGTTTGCCGTAAG Sbay.....: TACAACATCCAAAAGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCATTGAACCATCTTTGAAAGCTTTGGCTTCCAAATACAACTGTGACAAATCTGTTTGCCGTAAA consensus: ******** ***** *********** ** *********************************************************** ***************************** Scer_spli: DDDDD 1440~1560: Scer.....: TGTTATGCTAGATTGCCACCAAGAGCTACCAACTGTAGAAAGAGAAAGTGTGGTCACACCAACCAATTGCGTCCAAAGAAGAAGTTAAAATGAtctgtttcgcccaatcaatctatacat Sbay.....: TGTTACGCTAGATTGCCACCAAGAGCTACCAACTGTAGAAAGAGAAAGTGTGGTCACACCAACCAATTGCGTCCAAAGAAGAAGTTGAAATAAtctgtttcgcccaatcattctatacat consensus: ***** ******************************************************************************** **** ****************** ********* Scer_spli: D 1560~1680: Scer.....: ttatttactgtatactttaatgtacatcttcttttatcatacctactgttaaaatcataatattaattcatacaatatacttaagaaaacaatatacttttcttagtttcataactttgg Sbay.....: ttatttactgtatactttaatgtacatcttcttttatcatacctattattaaaatcataataatacttattataatatgtcaaacata----tatgctttccttagtgtta-aaatttgg consensus: ********************************************* * ************** ** ** ** ***** ** * * *** **** ****** * * ** ***** 1680~1800: Scer.....: aatctataatgttgtttttttttttttaagtatatttgtatat-----tatgcatataagtcaacgcgtagcgg----tggtattacgcgcaagcttttgatttctcttactattcttgg Sbay.....: gatctataaagt-gtttttgataaagaatatatatatacatacatttataaatatataagaaaatatataatgaatgacaatatcataccctggtccatgtttaatatgtttattgtttt consensus: ******** ** ****** * * ***** * *** ** ******* ** ** * *** * * * * ** ** * * **** ** 1800~1805: Scer.....: ttgt- Sbay.....: atttg consensus: * * { alias......: ['PRE3', 'CRL21'] chromosome.: 10 description: Subunit of 20S proteasome end........: 435618 exons......: [(1, 65), (182, 764)] gene.......: PRE3 introns....: [(66, 181)] length.....: 764 name.......: YJL001W plength....: 254 start......: 434855 tdist......: 309822 type.......: ORF up.........: 1 } Scer: 3 donors and 3 branches Spar: 5 donors and 4 branches Smik: 7 donors and 6 branches Sbay: 6 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 614), ('Spar', 614), ('Smik', 614), ('Sbay', 614)] ->[('Scer', 594), ('Smik', 594), ('Sbay', 594)] ->[('Spar', 1303), ('Smik', 1303)] ->[('Sbay', 3)] ->[('Sbay', 1030)] ->[('Sbay', 1412)] ->[('Sbay', 1648)] ->[('Scer', 1564)] ->[('Smik', 159)] ->[('Smik', 309)] ->[('Smik', 1337)] ->[('Smik', 1914)] ->[('Spar', 23)] ->[('Spar', 243)] ->[('Spar', 1633)] ] [ ->[('Scer', 695), ('Spar', 695), ('Smik', 695), ('Sbay', 695)] ->[('Scer', 825), ('Spar', 825), ('Smik', 825), ('Sbay', 825)] ->[('Spar', 805), ('Smik', 805), ('Sbay', 805)] ->[('Scer', 192)] ->[('Smik', 357)] ->[('Smik', 1406)] ->[('Smik', 1988)] ->[('Spar', 1917)] ] 0~120: Scer.....: tttttcagcaccaatattttgtagtttgcgtcttgttccgagctaaagaagc-aatcgggtacttgtcaaagaagtagcttgcttaataaaaagcaaacattaatttgttctgcatactt Spar.....: -ttttcagcaccaatgtcttatagtatgtgtctggttctgagataaagaaac-aatcgggtgcttgtcaatgaagtttattacttcataaatagcaattactactatgttctgcttcctt Smik.....: -ttttcagcaccagcggtttatactatgtatctgattctgagatagaaaaaccaattggttgcctgttgatgaagattctcacatcctaagtatcgatttttactgtgctcagcttgctt Sbay.....: --tgtcagtaccagcttctagt-gtatatgtctggctccaagatgaagaaaa-aatcgaacacctttgaatgaagcgtttcaccttatacagaacgttcatctatctaccttgctcactt consensus: * **** **** * * * * *** ** ** * * ** *** * * * * * **** * * * ** * * * * ** *** Spar_spli: DDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: -----tgaa--cctttcagaaaataaaaaac-attacgcgcatacttaccctgctc-gcgaag-aagagtaacactaacgcatt-ctatgggcaattgaagacagtattcagtacaagac Spar.....: ctt--taaa--tctttcagaaaacaaaaaac-attacgcgcatacttaccctgttc-gcgagg-atgagatacattaatgtgtt-ctatggtcaatcgaagacaggctcaagtacaagac Smik.....: ctc--taaa--tcttccaggaaa---aaagc-actacgcgtatgcttaccctgttt-gtgaag-aaggg--acgcaatagtatt-ctatgggcaattgaagacagcctcatgtacaagat Sbay.....: cttcttaaacttcttgcaaagaacgaaaaaccactacgcgcctacttaccctgtcccgtaaaggaagagctgcaatggcgtattactataggtaattggaaactagtctatgtacaagaa consensus: * ** *** ** ** *** * * ****** * ********* * * * * * * * * ** **** * *** * * ** ******** Scer_spli: BBBBBBB Smik_spli: DDDDDD 240~360: Scer.....: atagtccgtttccttgag-----tcaattcctatagcattatgaact-agccgcctttaagagtgccaagctcttcaacac----cgatcatttttgatgatttggcgtttttgttatat Spar.....: gtcgtcagtcgctttgcg-----tcgacttctatatcattgtggact-agcc--cttgagaagtgccaagtttatcca-aca---cgaccatccctgatgatttgctgtttccgctccac Smik.....: atgagcgccagactttag-----tcaaattatctatcatagagtacttagctggcctgaagagcgtcatgtcagttcatataacatggccctttccaattatttgccgtctctgctctac Sbay.....: aaggcaagttgatccggggacaattggttcatatattataattgctt---cttgcctgaagaccataaatttactttattcaacatgatctttgct-attatgtgcggtttctacctcat consensus: * * * * ** ** * * * * * * * * * * * * ** ** ** ** * * Spar_spli: DDDDDD Smik_spli: DDDDDD BBB 360~480: Scer.....: tgatagatttcttttgaattttgtcattttcacttttccactcgcaacgg-----aatccggtggcaaaaaagggaaaagcattgaaatgcaatctttaacagtattttaaacaagttgc Spar.....: taattgattcctttcgaattttgtcgttttcg-ttttccactcgcaacgg-----gattcggtggcaaaaaggg-aaaagcattgaaatgcaatctt-aacattattttaaacaa---ca Smik.....: taattgatttcttctcgattttgtcatcttcg-ttttccacacgcaacgggattcaattcggtggcaaaaagggaaaaagaactgaaatataatgtt--acaccagacttaataagtagc Sbay.....: taatagatttccttacaaatttgtcgttttca-------actcgcagcgg-----aattcggtggcaaaaaggg--aaagc-tttaaatgcgat-ttaaacacagtatatataaagtagc consensus: * ** **** * * * ****** * *** ** **** *** ** ************ ** **** * **** ** ** *** * ** Smik_spli: BBBB 480~600: Scer.....: gagacggtgtacaa--------ttacgataagaattgctacttcaaag--tacacacagaaag-ttaacATGAATGGAATTCAAGTGGACATCAATCGTTTGAAAAAGGGCGAAGTCAGT Spar.....: aaattagtatacaa--------gtaggcaaaaaatttccattcaagaa--tatagacagaaag-ttaacatgaatggaattcaagtggatatcaatcgtttgaaaaagggcgaagtcagc Smik.....: aatacca-gtacgg--------atagactacaaactgcatttttagagaatacaaatagcgat-ccaagatgaatggaatacaggtagacattaatcgtttgaaaaaaggtgaagtcagt Sbay.....: aggataa-atacagtaaaagatatagtcaaacaaacctcttttccaagaaaactagccgcaatatcaacatgaatgggattcaagtggatatcaatcgtttgaaaaagggtgaggtcagt consensus: *** ** * ** * * * * * ** ******** ** ** ** ** ** ************** ** ** ***** Scer_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 600~720: total....: ====== ======= Scer.....: TTAGGTACCTCAATGTATGTATATAAGAATTTTTCCTCCCA-CTTTATTGTTTCTAAAAGTTCAATGAAGTAAA-GTCTCAATT-GGC--CTTATTACTAACTAATAGGTA-TCTTATAA Spar.....: ttaggcacctcaatgtatgtatataagaattttttctccct-ctttactgtttttaaaagtacaatgaagtaaagtcttcgattgacc--tcaattactaactaatcggttatcgtacaa Smik.....: ttgggtacctcaatgtatgtatataagggttttttcttccatctttatcatttcttaaaaa-caatgaggcaac-tcttaaattcggt--tcaattactaactagcaggt--tctcatac Sbay.....: ttaggtacctcaatgtatgtata-aagggtttttttcttca--tttattgttctttgttgaatagtaaagaaac-tcttaaaatagacactcaattactaactagtgggttgttttttca consensus: ** ** ***************** *** ***** * **** ** * * * * * ** * * * *********** *** * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >========================================================================================================= 720~840: total....: ======= Scer.....: TCACCTAATAAAATAGTATGGCCGTGACATTTAAGGATGGTGTGATACTAGGTGCTGATTCACGTACCACCACTGGTGCGTACATAGCTAACCGTGTGACAGATAAATTAACGAGAGTAC Spar.....: ccacctgataaaatagtATGGCCGTGACATTTAAGGATGGTGTGATACTAGGTGCCGATTCACGTACCACCACTGGTGCGTACATTGCTAACCGTGTGACAGATAAATTAACGAGAGTGC Smik.....: aaccataatacaatagtATGGCTGTGACATTTAAGGACGGTGTGATACTAGGTGCTGATTCACGTACTACCACTGGTGCGTATATTGCTAACCGTGTGACAGACAAATTAACCAGGGTGC Sbay.....: actaatc-taaaatagtATGGCCGTAACATTCAAGGACGGTGTAATATTAGGTGCCGATTCACGTACCACTACTGGTTCCTACATTGCTAACCGTGTAACAGATAAATTAACGAGGGTCC consensus: * ** *********** ** ***** ***** ***** *** ******* *********** ** ****** * ** ** *********** ***** ******** ** ** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB BBBBBBB Smik_spli: BBBBBBB BBBBBBB Sbay_spli: BBBBBBB BBBBBBB known....: ==============>= 840~960: Scer.....: ATGACAAAATTTGGTGTTGTAGGTCCGGTTCTGCAGCAGACACGCAGGCGATTGCCGACATTGTTCAGTACCATTTGGAATTATATACTTCTCAATATGGTACCCCCTCCACAGAGACTG Spar.....: ATGACAAAATTTGGTGCTGTAGATCGGGCTCTGCAGCGGACACGCAAGCGATTGCCGACATTGTTCAGTATCATTTAGAATTATATACCTCTCAATATGGTACTCCCTCTACAGAGACTG Smik.....: ATGATAAAATTTGGTGTTGCAGATCCGGATCTGCAGCAGATACGCAAGCAATTGCTGACATTGTTCAATATCATTTAGAATTATATACCTCTCAATATGGTACCCCCTCCACAGAGACTG Sbay.....: ACGACAAAATTTGGTGTTGTAGATCTGGTTCTGCAGCAGATACGCAAGCAGTTGCTGACATTGTTCAATATCATTTAGAATTGTATACCTCTCAATATGGAACTCCTTCCACGGAGACAG consensus: * ** *********** ** ** ** ** ******** ** ***** ** **** *********** ** ***** ***** ***** *********** ** ** ** ** ***** * 960~1080: Scer.....: CTGCCTCGGTGTTCAAAGAATTATGTTACGAAAATAAAGATAACCTTACTGCTGGTATAATTGTGGCTGGTTATGATGACAAAAACAAAGGGGAAGTATATACTATTCCATTGGGTGGCT Spar.....: CAGCCTCAGTATTCAAAGAACTATGCTACGAAAATAAAGATAACCTCACTGCCGGTATAATTGTGGCTGGATATGATGACAAAAACAAAGGAGAAGTATATACTATCCCGCTAGGCGGCT Smik.....: CGGCCTCCGTATTCAAAGAACTATGCTATGAGAATAAGGATAACCTGACTGCCGGTATAATCGTGGCTGGATATGATGACAAAAATAAAGGAGAAGTATACACCATTCCAATAGGTGGTT Sbay.....: CAGCAGCCATATTTAAAGAATTATGCTATGAAAATAAAGATAACCTAACAGCCGGTATAATTGTTGCTGGGTATGATGATAAGAATAAAGGAGAAGTATACACCATCCCGTTAGGTGGTT consensus: * ** * * ** ****** **** ** ** ***** ******** ** ** ******** ** ***** ******** ** ** ***** ******** ** ** ** * ** ** * Sbay_spli: DDDDDD 1080~1200: Scer.....: CCGTCCATAAGCTGCCTTATGCGATAGCAGGATCTGGCTCTACTTTCATATATGGGTATTGTGATAAAAACTTTAGAGAAAATATGTCAAAGGAAGAAACCGTAGATTTCATAAAGCATT Spar.....: CTGTCCATAAGCTGCCTTACGCCATAGCAGGGTCGGGGTCTACTTTCATATACGGGTATTGTGATAAAAACTTCAGAGAAAATATGTCAAAAGAGGAAACCGTAGATTTTATAAAGCATT Smik.....: CAGTACATAAACTACCTTATGCGATAGCAGGCTCCGGATCCACTTTTATATATGGGTATTGTGATAAAAATTTTAGAGATAATATGTCAAAAGAGGAAACCGTAAATTTTATAAAGCATT Sbay.....: CTGTCCATAAACTACCATACGCCATCGCAGGTTCTGGGTCCACCTTCATATATGGGTATTGTGATAAGAACTTTAGAGAAAATATGTCAAAGGAAGAAACGGTAGATTTCATAAAGCATT consensus: * ** ***** ** ** ** ** ** ***** ** ** ** ** ** ***** ************** ** ** ***** *********** ** ***** *** **** ********** 1200~1320: Scer.....: CGCTATCGCAAGCCATTAAATGGGACGGATCTTCCGGTGGTGTTATAAGAATGGTTGTTTTGACAGCTGCTGGTGTGGAACGTTTGATATTCTACCCTGATGAATATGAACAACTATAAt Spar.....: CGCTATCGCAAGCTATTAAATGGGATGGCTCTTCTGGTGGTGTTATAAGAATGGTTATTTTGACAGCAGCTGGTGTGGAGCGGTTGATATTCTACCCCGACGAGTATGAACAACTATAAt Smik.....: CGCTCTCGCAAGCTATCAAATGGGATGGTTCTTCAGGTGGAGTCATAAGAATGGTTGTTTTAACAGCAGCTGGTGTGGAACGTTTGGTATTCTACCCCGATGAGTATGAACAACTACAAT Sbay.....: CGCTATCGCAAGCTATCAAATGGGACGGCTCTTCTGGCGGTGTCATCAGAATGGTTGTTTTGACAGAAGCTGGTGTGGAACGTTTGATATTCTACCCAGATGAGTACGAAAGACTATAGa consensus: **** ******** ** ******** ** ***** ** ** ** ** ********* **** **** *********** ** *** ********** ** ** ** *** **** * Spar_spli: DDDDDD Smik_spli: DDDDDD 1320~1440: Scer.....: agaccccaaaagaacaaattctgagtgattacttctctttatatttgttaacaaatgcctctggatctacactgatata--acatataatag-tctataacctctttctctttttctct- Spar.....: agac-cagaaaaaaagaatttttaccaatttcttcactcagtatttgttaataaatgcctatgaatttacacagatata--acgtatatcaagtctataatctcttcgtctttctttat- Smik.....: AAtctcaggaaaatctggtac---gtt-ttccttcgctctgtatttgttaataaatacctatgagtgtacatagatata--acgtatattaactctataacctctctgtctttctctat- Sbay.....: acaaaaaaacagatgtctttct-attcctcttttcagcctcgttttgtttataa-tgcatatgaatttacacacatatataagatatattaagtacgtaacttacatgcctttctttcta consensus: * * * * * *** ****** * ** * * * ** * **** ***** * **** * * *** * **** * * * Smik_spli: DDDDDDDDD BBBBBBB Sbay_spli: DDDDDD 1440~1560: Scer.....: ----------tcgcttta--cgcttttttctctaactgt-tagaacgacaaagtatctcagaagggaatttcgtaagcaagatattttacgac-----taatcatttttttgttgtataa Spar.....: ----------tcactatt--tttttttttttcgaattgtattataaggccaaagaattccaagggaaattttgtaggcagaactctttaggacgctcataacgtttcttgtactgtaaaa Smik.....: ----------ta--tttg--tgctattat------------------gcagattgtgtcaca------tatcatagccagggtgg--------------------------gatatccaa Sbay.....: tgcacacatgtcgttttgatcgttttctttccaaattcatctaagttggcatgcataaccaattagaatactgaacttgagatgtcgttaaagaaaacatgcattattctagccagagag consensus: * * * * * * * * * * * 1560~1680: Scer.....: aaacgtatg-----------t---gagattgattcactaattcttcggagtcctggaaggcttac---cttatctatgcattcgtacagtt-gtgtgcaatgttaaaaatggtgactgta Spar.....: aaacgtacgaagaacatacgt---gggattcaattggtaatttgtgcgcgttctgtaaaatttcttctctcgtgtatgtattcatagaatt-ataggtgatgtattaaatggcgacctca Smik.....: ggacggac-----------------aacttg--------------------ccaggcagg-----------atct-----------cagta-atatgcaaagc--------------ata Sbay.....: ttacctgcattccgtacaacttgagagatatgtaattacttgttttccagaataattaggctcattcttgtaaaaccatttgaaataggtacgtttgttaatataacagttagttctcta consensus: ** * * * * * * * Scer_spli: DDDDDDDDDDDDDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 1680~1800: Scer.....: tctacgt------------atctataaaaaaaggttaactaccggaaaat------catttcttctcgtaaagtgtatatttaggttcgga---aatcataaacattgtttttttgt--g Spar.....: tagatgt------------accttgagaaaaaaaatagt--cttgaaaac------cttttttat----aaagcgcatattttgcttcgga---aatcatatacattaaaaaataga--a Smik.....: ttt-cat------------ggcgaaaaaagaaa-----------gagaat------aagtgcatc-----aaactcatttacaaattcgtg---at------acattgtcta--gat--g Sbay.....: tattcatttcggatttataggctataaatgaaactgaatactttgaacgcttacccaaattgatctttataaacgtacaatgctctttgaagaaatctctatacttcgtgtgaaaattaa consensus: * * * * * ** ** * ** * ** * * ** * 1800~1920: Scer.....: ttttttatt-----------------------tt-taaataaaaagaa-------taaatattttatattaaaaa----ataaattttaaagtaaattaattatttaacacgtgattaag Spar.....: aatatttta-----------------------tgttaaaaaatga-aa-------taattattttataataataa----aataatacctttttattttatttatattacacgtgattaat Smik.....: ctctatatt-----------------------ttacaaatggtgatct-------tacttatgt-atcttgaaaa----aaacggactacagtaaattg-----ttaa----tggttaag Sbay.....: ttttctgttcggagcgcatacccaatgaatatttgtaaaagtaaataaatatttttgtttatattgttttgaaaataataaaaaaataaaacataattataaaataaagcacgtgatatg consensus: * * * *** * * *** * * * * ** * ** * ** Spar_spli: BBB Smik_spli: DDDDDD 1920~2040: Scer.....: ttactctaatataatcctatttaataattag-tagagttgttgagaacgagtataatattattttttttttatttttttgtaggttctttggccatcctaaatagaataagcatccacaa Spar.....: taac---aatcacttccttatttctctttat-gttgttttcagttattgtatttcgaa---tatttgattcttttttttttaagtc--atcccgaatagaagaaggaaa--catacttaa Smik.....: ttc------tgtattgctttttaaacataac-tttactttcggaaatcaaaaccagtaattttttaaaaattaactttttaaagtttggtattaattttaa-tagaaa----ataaaaaa Sbay.....: acgaaatcatcaaatgctattgcaaggttatattcgaatctgaatatggaggacagcccttttttgcatttgtagtattttt--tctaaaacctcctacgaatagacaaattcttgacca consensus: * * ** * * * * * * ** * ** * * ** * * Spar_spli: BBBB Smik_spli: BBBBBBB 2040~2160: Scer.....: caactaaactggt---attttgtt-atacacaacgcgtcttggttaggcatctgttttgttttagctattgttcatcgcgtttttttttttcttatctcttttaccgaggggcgaaaata Spar.....: caaccaaactggt---atttttttcatgcttaacgcgtgttgtttaggcatttgttttgtgtgagc--ttgatcgcgctcttttttttttccttatctcttgtcccgaggggtgaaa-ta Smik.....: aaataaaaattct---attt--tt-aattaaagcacgt---gattagttatttattt--tttcaataacatgtca--acaatttttttattcttatcttctgtcccgaggggtggaa-ta Sbay.....: taattgaaatatttgaagtcacgtcataattgacgcgtttttgttagccctttgtttcatttcgaggtcgtaacttttttttttcttatctatgctccgcgttgtggattagtgaga--a consensus: ** ** * * * * * * * *** **** * * *** * * * *** ** * ** * ** * * * * 2160~2280: Scer.....: gcgatagat-cgagaatataaataaataaaatattgttgtgttgtgtagttctaaagaaaaatttt---acagtgaaaaggtaacaccggggagtcattacgtagacttacgtattctgt Spar.....: gtgatagattcgagaatataaataattaagtgaaggattt----------tatttgtaaaaatttt---acagggaaaa-gtgcta-aacagactcattacgtgaacttacgtattccgt Smik.....: gcaatagat-cgagaatataaata--------------------------ttccactaaaatcttt---aaaggaaaaatgtg----tgcagtgctattacgtagagatatgtactccat Sbay.....: agagtgaatataaataattaagtgagaaattgaagaatctcgaagaagtgttcaaatgaaggtcttctgaaaaaaataaagtagcatacagtagttatcatatagcattagccgctccgc consensus: * ** * * *** * * ** ** * * * ** ** ** * * ** ** 2280~2303: Scer.....: ataactga--ttccgagacgcaa Spar.....: at-attgc--ttccgagacgcaa Smik.....: attattga--ttccgaagcgcaa Sbay.....: at-attgaaactccaagacctag consensus: ** * ** *** * * * { alias......: ['APS3', 'YKS7'] chromosome.: 10 description: similar to Aps1p and mammalian small subunit (sigma-2 adaptin) of plasma membrane-associated clathrin assembly complex (AP-2) end........: 396288 exons......: [(1, 22), (100, 662)] gene.......: APS3 introns....: [(23, 99)] length.....: 662 name.......: YJL024C plength....: 220 start......: 395627 tdist......: 349152 type.......: ORF up.........: 0 } Scer: 7 donors and 2 branches Spar: 4 donors and 1 branches Smik: 3 donors and 1 branches Sbay: 3 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 802), ('Spar', 802), ('Spar', 806), ('Smik', 802), ('Sbay', 802)] ->[('Scer', 1650), ('Spar', 1650)] ->[('Scer', 1868), ('Spar', 1868)] ->[('Sbay', 208)] ->[('Sbay', 1544)] ->[('Scer', 272)] ->[('Scer', 326)] ->[('Scer', 536)] ->[('Scer', 1483)] ->[('Smik', 85)] ->[('Smik', 445)] ] [ ->[('Scer', 849), ('Smik', 849), ('Sbay', 849)] ->[('Scer', 1369)] ->[('Spar', 1716)] ] 0~120: Scer.....: gaaatgggccaaccatgcatctctcttgctgtccactatgtatctacatatacgttttaaatatttatcatcgaatgtgcaaatacaagaacgtcactttcgagtctaagtggtt-gtca Smik.....: .................................................ggaaggttaaacttgttcttttcttactatcactacgtaagtcatcctttatattttcaagtatttcatgg Smik_spli: DDDDDD 120~240: Scer.....: ctcatgtttcgtgataaaagaaatatttacaacccgggattttgaaccgttgcatggtcat--actcgaggagtattagaatcaagccattatgatctgctatatatcttaatggtaaga Smik.....: caccgaataaataaaaagaggttacttcaaaactcagctgtgcttaccctttgctcttcctggaggaaaagagcactgaatccctacattttaagtctgttacatggtcctcttttacga Sbay.....: ----------------------------------------------------------------------------tagcctgaaactgttcgtacttcttttctatttctcc------a consensus: * * ** * * * * Sbay_spli: DDDDDD 240~360: Scer.....: tcacaatataaatggatagcaataacttttgagtatgaggagttccactttcataaatgttatagatatggaaagcttacgctgatgtaagtaatgagtaatcacaaaacgaggtaagaa Smik.....: --agaacaaacttaatgagtaaaagtcatcgaa---------------gttagcggaagct-gaaacacaggga-ttgataatgaaatagg--ataatgaatgacaacatttaaaacaag Sbay.....: tctatgcgtgaattatcgtcaactatctttaaa-----------ccttgtttatatgtatt-taaata--------ttcccacaacttctgcaaccactagttg-aaagctacaaatcag consensus: * ** * * ** * * * * * * * * * * * * ** * * Scer_spli: DDDDDD DDDDDD 360~480: Scer.....: aggccaagcgaaaataaagtcatatattttaggcaaaaaaaaaaagtctcaagtaattct----ctataaggcaataaaaaaatagttctcattcagtctt-ttttctttctttttgaat Spar.....: ...................................................................................................tt-cctata---------aaa Smik.....: agagtaaataagtacaa---cattgtgtaaaactgtcgattcccttttttagattcctatatcccgaggaggactctagtacattgtatgcatataattttccttaaatcgataatggat Sbay.....: ccgtcaagctaaaatata--tatccgttatagac-cttacttattgtccgccgcatctcttgaattaaatgacaatgaatgaacag-gcccatccagggtt-catatat---------at consensus: ** * * * ** * * * * * * * * * * * *** * ** * * Smik_spli: DDDDDD 480~600: Scer.....: acgatggctcgattaaggttcttcatttcaaaaaatatcttgcttattaatattgagtatgaatgaaagattcatatcaa-aagtaagcgcaagtggtttagtggtaaaatccaacgttg Spar.....: caaataacttcttt-----------------gtaattactgacatatttatatttctcgaatataaaatactcatatcaattagttagcgcaagtggtttagtggtaaaatccaacgttg Smik.....: tctgagtacttgtaggaatattatgatt---atagttaaatgattgatagcaaccataaaacaaaacattagca-actgt-taaacagcgcaagtggtttagtggtaaaatccaacgttg Sbay.....: gcattaacct---------------------aaagtattatgattcttatcatcaattaagaatgata-------acaaa-taactagcgcaagtggtttagtggtaaaatccaacgttg consensus: * * * * * * * * * * ********************************** Scer_spli: DDDDDD 600~720: Scer.....: ccatcgttgggcccccggttcgattccgggcttgcgca--tttcttttttatatttcttctcttacgttgtaggagtatattttttt-taaatagtccactggaa--caatatcatttct Spar.....: ccatcgttgggcccccggttcgattccgggcttgcgcaatttgattttttaagcttcttacctgatactgtagtag-atactttttt-taaatgttccactagat--tgaaatcatacct Smik.....: ccatcgttgggcccccggttcgattccgggcttgcgca------ttttttacatcatatcctgattactacgatagggtacttttttttcttcagtccacttaaa--atgaatggcatct Sbay.....: ccatcgttgggcccccggttcgattccgggcttgcgca--tttattttttacttcattttttcaatttcgcagaagcatatttttttgccttttgctcatttaaagctgaaatcacaact consensus: ************************************** ******* * ** ** ****** ** * * ** ** 720~840: Scer.....: gttgtaactataccagat----ctgggttacagaggccagaacacatataacgttacacaATGATTCATGCAGTTCTAATATGTATGTAAGATTTCTCAAGGGTCTTTTCTTCTGCCAAA Spar.....: ggtgtaactatacaagat----ctgagctacaaaggccacggcataaacaacgttacacgatgattcatgcagttttaatatgtatgtatgatttctcaagaaccttccNNNNNgcNaaN Smik.....: gatgtaaccataagaggt----tcgagttacggagctcacagcatagacgagattatacaatgattcatgctgttctgatatgtatgtataatctttcaaaccattttttt-----tgaa Sbay.....: aatcaacctctaccacctgacgctgaattagaaagcccactcagtacgataaactgcacaatgattcatgctgttttaatatgtatgtacattgtcttaagtttcttttttatagccaag consensus: * * * ** * * * ** ** ** * * * ** *********** *** * *********** * * * ** ** * * Scer_spli: DDDDDD Spar_spli: DDDDDDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >===================================== 840~960: Scer.....: ATTATACATTACTAACATAATTCATCATTTTTGGTATAGTCAATAAGAAATGCCAACCAAGATTAGTGAAAT-TCTACACGCCGG-TCGACCTTCCAAAGCAAAAACTGCTATTAGAGCA Spar.....: NttNcatNtNNctNNNNNNNNtNaNcNNNNNNN--ataNNtNNNNaNaaNtNtNaNNNaNNNttNNtgNaatNtNtaNacNcNNgNNNgNNNNtNcNaNNcNNNaNNtNctNtNaNNNNN Smik.....: tttacac-ctactaacaggattttatcatacata-atagtcaataaaaaatgccaaccaaggttagtgaaat-tttacacgcctg-tagatctgcctaagcaaaaactgctattggagca Sbay.....: tatacccgttactaacagaaatctactataccaa-atagtcaataagaagtgccaaccaagattagtgaagt-tctacacgcctg-tggagctccccaagcaaaaactgctgctggaaca consensus: ** ******** * * * ***** ***** ** ** ******** ******** *** ******** *** ** ** ** ************** * ** ** Scer_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =====================================>= 960~1080: Scer.....: AGTATATGAATTGATTTCTCAAAGGAATAGCGATTTTCAAAGTTCTTTTTTAGTCACGCCACCATCGCTTCTG--TTAAGCAATGAAAATAATAATGATGAGGTAAACAATGAAGATATT Spar.....: NgtNtNtgaaNNNaNNNcNNaNNNNNaNNNcgNNNttNNaagNtNttNtNNNgtcNNNNNNNNNNNNcNtNNgNNttaagNNatNaNagtNNNaNNNatNaNNtNaacaNtNaNNNtaNN Smik.....: agtatatgaactgatttcccaaaggaatagcgattttcaaagttcttttttagtcacaccgccatcgctttta--ctcaataatgaaagtaataatgttgaggtaaacaatgaggacatt Sbay.....: agtttatgaattaatttcccaaaggaatagcgattttcagagttctttcttagtcacaccaccatccctttta--ttga---atgagagtaatagtgatgatataaacaacgaggatatt consensus: *** ****** * ***** ******************** ******** ******** ** ***** *** * ** * * **** * ***** ** *** ******* ** ** *** 1080~1200: Scer.....: CAAATCATCTATAAAAACTACGCTACACTATATTTCACTTTCATCGTGGATGATCAAGAATCAGAACTGGCCATATTAGATCTGATCCAAACTTTTGTGGAATCATTGGACCGTTGTTTT Spar.....: NNNatNaNNNNNNaaNNNtaNgNNNcNNNgtNNtNtaNNNNcNNNgtNNaNNNtNaagaatNgNNactNgNNNNattaNaNNtgaNNNNNacNtNtgtNNNNNNaNNNNNNNNNNgttNN Smik.....: cagatcatctacaaaaactacgctacattgtNtttcaNtNNNNtNNtNNatgNNNNaNaatcagaactagctatattagatctaatccaaacttttgtagaatcacttgaccgttgtttt Sbay.....: cagatcatcttcaaaaactacgctacattgtatttcacttttattgtggacgaccaagaatcagaactagccatattagacttgatccaaaccttcgttgaatcattggaccgttgtttc consensus: ** ******* *************** * ***** ***** ** ***** ** ******** ***** ** ******** * ******** ** ** ****** * *********** 1200~1320: Scer.....: ACTGAAGTCAATGAACTTGATTTGATTTTTAACTGGCAAACTTTGGAAAGTGTATTAGA-AGAAATCGTGCAGGGGGGCATGGTCATTGAAACAAATGTGAACAGAATAGT--TGCTTCT Spar.....: aNtNaaNNtaNNgNaNNtgatNtNaNNNNNaNNNNgNNNNNNNtNNNNagtNtNtNNNaNNgNNNtNNtNcaNNNtNNtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Smik.....: actgaagtcaatgaacttgatttgattttcaactggcaaactttagaaagtgtgttgga-agaaattgtacagggcggtATGGTCATTGAAACAAATGTAAACAGGATAGT--TGCTTCT Sbay.....: actgaagtcaacgaacttgatttgattttcaattggcaaactttgcagagtatattgga-agaaattgtacagggagggATGGTCATTGAAACCAACGTAAACAAGATCGT--GGCTTCC consensus: ******** ** ***************** ** *********** * *** * ** ********* ** ***** ** ************** ** ** **** ** **** ***** 1320~1440: Scer.....: GTTGACGAACTCAACAAAGCTGCCGAGTCCACAGATAGTAAAATTGGAAGACTAACGTCCACTGGATTTGGAAGCGCACTACAAGCGTTTGCTCAAGGCGGATTTGCACAATGGGCAACG Smik.....: GTTGACGAACTTAACAAAGCTGCTGAATCTACAGACAGTAAAATAGGAAGACTGTCGTCTACTGGTTTCGGGAGTGCACTACAAGCTTTTGCTCAAGGTGGATTTGAACAATGGGCTACT Sbay.....: GTTGACGAACTAAACAAAGCTGCTGAGTCCACAGATAGTAAAATAGGAAGGCTATCATCGACTGGATTCGGGAGCGCACTACAAGCGTTTGCTCAAGGTGGATTTGCTCAATGGGCCACC consensus: *********** *********** ** ** ***** ******** ***** ** * ** ***** ** ** ** *********** *********** ******* ******** ** Scer_spli: BBBBBBB 1440~1560: Scer.....: GGGCAATAAacaaacaaattaatcggatgatggttatttt--cgttcgtcaa---gatctgcacg------taaaaccggcttgaag-----aaaattagctgagccgggcatttcccag Spar.....: NNNNNNNNNNNNNNcNNtttNNacNNNNNNtNNNNattNctttgatttttcaa--gatcagcgca------tgaaatggagttgaag------aaatcagttggaccgggcatcttccag Smik.....: GGACAATGAatt............................-............................................................................... Sbay.....: GGACAGTAAaaaatgtaattccaggaatagttgcagtttc-aagatcaacgaaccaatgggcacggtgcaatcagccgagcctccagctgccccagttctgttagtatgatatcgtacaa consensus: ** ** * ** * * ** * ** * * *** * * * ** ** * * * * ** * * * * ** ** Scer_spli: DDDDDD Sbay_spli: DDDDDD 1560~1680: Scer.....: c--ttttttaatatataatacaaaattaggcaccctccctttaaaattctgtttaa-aactagatctggtcataaaacatagataatattgtacgtacaatatggtcacacc---gttag Spar.....: c--ttttttaatgtatagtgcaacatcaatctccttttctttttaattctattttgtgactggatctggtcatagaatatagata--atcgtatgtacaatatagtggcactcttaaaag Sbay.....: caacttccccactggtaaagtaatgctaatcttcttttcctttggttcttgtttta-ccattgatcaggtagctaactactgat-tcaccgtatatagactatagtgatattttgattaa consensus: * ** * ** ** * * * * * ** * * *** * **** *** * * *** * *** ** * *** ** * * Scer_spli: DDDDDD Spar_spli: DDDDDD 1680~1800: Scer.....: gaaaagtaagatctcgctgt----gtctagagaatgagtt----ttctttctttttgacaggaaaaaaataagttctgataatgtaaaagttatagaaac-----------aatgtaa-- Spar.....: ttagattgtcattgtatt-tagagaatgagtttcccaattaaccatcccctttatttgacagagaaaaacaagttctagtaatgtgaaagttattgaaac-----------aatacaact Sbay.....: gtaaattac--tcacgctgttacggtctactggacttattcaaactgttgtttttttgtctgagaatgagacgtcggtaatgtgagaaagtcttggcatcacaattgcataaatgtaatg consensus: * * * * * * * ** * ** ** ** ** * * ** ** ***** * * * * *** ** Spar_spli: BBBBBBB 1800~1920: Scer.....: aataggatacatttctatatta-atatgtacctataatatatgcagattggtatatgtaattcaaggagtatgc-atagaaatagcaatccagcgagaataatttaaaaggag------- Spar.....: aa--ggatatatttccatgatg-atatgtatctatgataaatgcaggttggtatatgttatttaagtagtatgc-atagaaatagcagtccagtgaaaa-aataaagaaggg........ Sbay.....: aatacaataaagtatactcttatgagtgtacatttaataaatgcgggtaggtatatatattgtttgaagtacataatacatgtagtaaaaaaaaaataatgcttaaatagtggtggcgat consensus: ** *** * * * * **** * * *** **** * * ******* * * * **** *** * *** * * * ** * * ** * Scer_spli: DDDDDD Spar_spli: DDDDDD 1920~1942: Sbay.....: agtacactggagcagcgacaaa { alias......: ['NSP1'] chromosome.: 10 description: nuclear pore protein end........: 368069 exons......: [(1, 1), (120, 2590)] gene.......: NSP1 introns....: [(2, 119)] length.....: 2590 name.......: YJL041W plength....: 863 start......: 365480 tdist......: 365480 type.......: ORF up.........: 1 } Scer: 4 donors and 9 branches Spar: 3 donors and 3 branches Smik: 5 donors and 5 branches Sbay: 2 donors and 4 branches INTRON SPLICING FOUND!! [ ->[('Scer', 96), ('Spar', 96), ('Smik', 96), ('Sbay', 96)] ->[('Scer', 349), ('Spar', 349), ('Smik', 350), ('Sbay', 349)] ->[('Scer', 2674)] ->[('Scer', 3396)] ->[('Smik', 1030)] ->[('Smik', 2958)] ->[('Smik', 3195)] ->[('Spar', 922)] ] [ ->[('Scer', 464), ('Spar', 464), ('Smik', 464), ('Sbay', 464)] ->[('Scer', 2584), ('Scer', 2576), ('Spar', 2584), ('Smik', 2576)] ->[('Scer', 1043), ('Sbay', 1034)] ->[('Scer', 1115), ('Smik', 1115)] ->[('Sbay', 1475)] ->[('Sbay', 3234)] ->[('Scer', 947)] ->[('Scer', 1298)] ->[('Scer', 1421)] ->[('Scer', 2981)] ->[('Smik', 2165)] ->[('Smik', 2948)] ->[('Spar', 3529)] ] 0~120: total....: ====== Scer.....: taagggatttctcttaattttttaa-tctcttttttgtattgg-gtttcgaaaatataataagga--gccc-tcagacatttacgtatcctttcatgtatgattattttaagtat-ttt- Spar.....: taaaggatctctttcaattttttt--tctctcttttgtattggagttctgaaaatacagcaaggg--gcccctcagacatttacgtatcctttcatgtatgattattttaagtatattt- Smik.....: taagggattttgttcatttttttagttcccctttctttactggagtgctgtaaacatattaatgtttgaccctctgacatttacgtattctttcatgtatgattattctaaatatttttc Sbay.....: tgaaggatttctttctttctttt--------------cattggagctcagagatcatatcgcatgctatctctcaggcgtttacgaatccttttatgtatgattattttatgtatttttt consensus: * * **** * * * **** * *** * * * * * * ** * * ****** ** **** ************* ** *** *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: gtattttttattattattaatgtaagcataatgcttttgtagaa--cttgagacaacccggacgggtccgatgagtttttttcttcaaacttttatagaaaataataaatggtgttagca Spar.....: gtattttttattatt---aatgtaagc-taaccgctctgtagaa--cttaagacaacccggacgggtccgatgagattttttttccaaaccttttaagagaattataaatcgtgttagca Smik.....: gtatttatcattttt---aatgtaaccttattccttttgtacaaagtctagaacaacccggacgagtccgatgagtttttttttc--aacttttagaaagaataataacttttgttagct Sbay.....: ataattttcattttt--caatttaagcttattgctttttgtaagagcgtagcacaacccggacgggtccgatg---ttttttttttcaacctctaaagaatataatgaattgttttagct consensus: ** ** * *** ** *** *** * ** * * * * ************ ******** ****** * *** * * * * ** ** * * * ***** 240~360: total....: ====== Scer.....: ccactcagatgtgatatttgacgtgtcgattgtgatacctgaagacgctattggagagccattgcaa-cgcacagtccaacagtaataagctctgatcgttttgaaaaA-GTATGTTTCT Spar.....: tcattcagatgtgatatttgacgtgtcgatggtgataccttaagacctcattggagagccattgcaa-cgcatagtcgaacaataataggctctgatcaatttgaaaaa-gtatgttccc Smik.....: ccactctgatgtgatgtttgatgtgataatttaaatttcggaataaaccattagagtaccattgaaa-cgcatagccaaacgataacaatccctgatcgttttgaaaaaagtatgtcttc Sbay.....: ccagttagatgtg-tggttgatatacaaattatgaaccctataaacatcatcggagaacaattgcaggtgtatactcgaacaacaacaagctcggatcgttttgaaaaa-gtatgttttt consensus: ** * ****** * **** * ** * * * * ** *** * **** * * * * * *** ** * * * **** ********* ****** Scer_spli: DDDDDDD Spar_spli: DDDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDDD known....: >========== 360~480: total....: ======= Scer.....: TTCCATTGGACGGTTGTCTTCCG-ATCAAAATTTT-ATCTCCTAT----------------------ACAATTTCTTCCT---------------------ATTTACTAACGAAAACCTG Spar.....: ttccattggacgcttgctttccctatcaaaatttttatctcccaccttcacc---------gatataacaacgtctttc----------------------atttactaacaaaaacctg Smik.....: ttccattggacgcttgctctt---atcaaaaattctatctttcgtcccgtgcagggcataggattaaatgagattttttttagtgatattcaatgtctttaatttactaacacaaat-tg Sbay.....: cttcattggacgctttcctctcctttcaagttttttttcttcctgtgtaagaa----atatgattgaatgagacttttta--acagtacgaaatgattttcatttactaaca-gaaccca consensus: * ********* ** **** ** *** * * ** ********** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 480~600: Scer.....: CGAACCTGTAAACTACATGATTTTT-AATATTAGTGAACTTCAATACACCTCAACAAAACAAAACGCCCTTTTCGTTCGGGACTGCCAACAATAACTCTAACACCACCAATCAGAATTCC Spar.....: caaacatatgaactacgcaaccttcgaaaatcagtgaacttcaatacacctcaacagaacaaaacgcccttctcgttcggggctgccaataatagctttaacaccacaaatcagaacacc Smik.....: tgcaactgtgaagcatacgactttc-aaaattagtgaatttcaatacacctcaacagaacaaaacgcctttttcgttcgggactgccaacaataacgctaacgccaccacccagaacaca Sbay.....: tgaaca-actccttctaccactttc-aaaatcagtgaacttcaatacgcctcaacagaacaaacaacctttttcgttcggtgctgcaaataataacgctaatgccaccaaccaaaataac consensus: * * ** ** ** ****** ******** ******** ****** ** ** ******** **** ** **** * *** **** * ** ** known....: ================================>= 600~720: Scer.....: TCTACTGGTGCGGGCGCCTTCGGAACAGGTCAATCAACATTTGGTTTCAACAATTCTGCGCCAAATAACACGAACAATGCAAACTCTTCAATCACACCTGCATTTGG------------- Spar.....: tctactggtgcaggcgccttcggaacaggtcaaccaacattcggttttaacaatcaagcggcaaataacacgaacaacgcaaactcttcaaccacacccgcatttgg------------- Smik.....: tctactggtggaggtgcctttggtacgggacaaccaacattcaattttaacaatccagtagcaaataatgtaaacaacacaaactcttcaaccacacccgcttttgg------------- Sbay.....: tct---ggtgcaggtgcctttggaacaggccaacctgcatttagttttaatagtgcagcaaccaataatttgaacaaccaaaacacttcagccacacctgcctttggcagtagttccgga consensus: *** **** ** ***** ** ** ** *** * **** *** ** * * * * ***** ***** **** ***** ****** ** ***** 720~840: Scer.....: --------------TAGCAATAACACTGGTA---ATAC---------TGCATTCGGTAACAGTAACCCCACAAGTAACGTTTTTGGCAGCAACAATTCTACGACTAATACATTTGGTAGT Spar.....: --------------taacaataatactggta---atac---------tgcatttggtaacagcaaccctacaagcaacgtatttggcagcaacaattctacgactaattcgtttggtagc Smik.....: --------------tagcaacaatactgaca---atgc---------tgcatttggtaacggcaacccttcaagcaacg------------------------------catttggtagt Sbay.....: accaatgcgttcggtagcaacaatgctagcaccaatgcgggcaccaatgcattcggcagcagcaatcctacagcgaacacatttggcagcaataattcgacaactaatgcatttggtagc consensus: ** *** ** ** * ** * ****** ** * * * ** ** ** *** * ******** 840~960: Scer.....: AATAGTGCAGGGACATCCCTTTTTGGATCTTCCAGTGCTCAACAAACGAAGAGCAATGGAACTGCTGGAGGAAATACATTTGGTTCTTCATCCTTATTCAATAACAGTA----------- Spar.....: aatagcgccggaacatccctttttggatcttctggtgctcaacaaacagaaggcaatgggaacgtcggaggaaatacatttggttcgtcatccttattcaataacggca----------- Smik.....: aacagtactggaacatccctctttggatcttc------tcaacaaactaaaaataatgg---------aggaaattcatttgcgtcttcatccctattcaataacaacggaagtaacaat Sbay.....: aacaatgctggaacatctcttttcggctcttctggtgctaccaagacaaacggcgaaggaaataccggagctaatacattcggttcctcgtccttattcaataacaata----------- consensus: ** * * ** ***** ** ** ** ***** * * ** * * ** ** *** **** * ** ** *** *********** Scer_spli: BBBBBBBBBBBBB Spar_spli: DDDDDD 960~1080: Scer.....: -CTAATAGCAATACGACAAAACCTGCGTTCGGCGGTTTGAATTTTGGCGGCGGCAATAACACAACTCCTAGCTCGACCGGTAATGCTAACACAAGTAATAACTTATTTGGCGCTACCGCA Spar.....: -ctaataataatgctacaaaacccgcctttggcggtttgaactttggcggcgacagtaatacaactcccagctcgaccagtaatgctaccacgagtaataacttatttggcgccactgca Smik.....: gccaataacaataccacgaaacccgcgtttgggggtttgaattttggtagcaatagtaacacaactcctagtATGACTGGTAATGCTCCCCCAAGTAATAACTTATTTGGCGCTACTACA Sbay.....: -ccaatgataatgccacgaaaccggcctttggcggtttgaattttggcggtaatagtaatgtcactcctgcgtccactaacaatgcagctccaagtaatagcttattcaatagtaccgca consensus: * *** *** * ** ***** ** ** ** ******** ***** * * *** ***** ** ***** * ******* ****** ** ** Scer_spli: BBBBBB BBBBBBB Smik_spli: DDDDDD Sbay_spli: BBBBBBB 1080~1200: Scer.....: AATGCGAATAAGCCAGCCTTTTCCTTTGGTGCAACCACTAACGACGATAAAAAAACAGAACCAGACAAGCCTGCTTTCTCCTTTAATTCAAGTGTCGGTAATAAGACAGACGCTCAAGCT Spar.....: aatgcgaacaaaccagccttttcccttggcgcaaccactaatgacgataaaaaaacagaaccgtccaagcctgctttctcctttaattcaggtttcggtaataagacagaaggtcaagct Smik.....: AATGCGAACAAACCTGCCTTTTCCTTTGGCGCAACTACTAACGGCAATGGAAATGCTGAACCTTCTAAGTCTGCCTTCTCCTTTAATTCAAATTTCGGTAATAAAACAGAGGGTCAAGCT Sbay.....: aatgcaaacaagcccgccttttcttttggtgtaaattctaacgacaaaaaggaacctgagccagctaagaatgctttctccttcaactcaaatttaggtaataaggcagaaggccaagct consensus: ***** ** ** ** ******** **** * ** **** * * * * * ** ** *** *** ******** ** *** * * ******** **** * ****** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 1200~1320: Scer.....: CCCACTACAGGATTTTCCTTTGGTTCACAACTAGGTGGAAACAAAACGGTTAACGAGGCTGCAAAGCCTTCCCTTTCATTTGGTTCAGGATCAGCTGGTGCTAACCCAGCTGGAGCTTCG Spar.....: cccactactgggttttcctttagttcacaactaggcgggaacaaaaccggcagcgaagctgcaaagccttctccttcttttggttcagaatctgccgccagtaaaccagctggggcttcg Smik.....: CCCACGACAGCATTTTCCCTAGGTTCACAATTAGATGGGGACAAAGCTGACAGTGAAGCTGCTAAACCTTCTCTCTCTTTTGCTTCGGAACCAACGGGCAGTAAACCAGATGGAGTTTCG Sbay.....: cccactccgggggtttctttaggtacacagttaggtgggagtgaaactgccagcgaagctgccaagccggcattttcttttggctcgcaattgaatgacagtaaaccagcagtaaattct consensus: ***** * * **** * ** **** *** ** ** * * * ** ***** ** ** * ** **** ** * * *** **** * *** Scer_spli: BBBBBBB 1320~1440: Scer.....: CAACCCGAACCTACAACTAA---------------------------TGAACCAGCAAAACCAGCCCTCTCTTTTGGTACTGCAACATCCGACAATAAGACAACTAACACAACCCCAAGT Spar.....: caaccaaaattctc--ct-----------------------------tgggc--gctacac------------------ctgcagaatctaaagttaacgaaac-agcgaaaccaccg-- Smik.....: CAGCCGAAACTTTCTTTTGGTGCTACACCTTCAGAATCTAAAGTCGGTGAAACAGCTAAACCTGCGTTTTCCTTTGGTACTACAACAACCCATAGTAAGACAACCAATACAACGCCGAAT Sbay.....: cagccaacactctctttt-------------------------------ggc--actaaac------------------ctgcagaaacaaaggccaacgacac-atcaaagccggca-- consensus: ** ** * * * * * ** ** ** * * * ** ** * * * Scer_spli: BBBBBBB 1440~1560: Scer.....: TTTTCGTTTGGTGCTAAATCGGATGAAAATAAAGCTGGTGCTACTTCTAAGCCTGCCTTCTCATTCGGTGCTAAGCCAGAAGAAAAGAAGGATGATAATTCCTCAAAACCAGCTTTCTCA Spar.....: ttttcctttggcactacaacagcagaagataagacaactaatacagct---ccaagtttttcattcggtgctaagccagaagaaaagaaggacggcgattcctctaagcctgccttctca Smik.....: TTTTCACTCAGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCACCAAAGCCTGCCTTCTCGTTCGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCATCAAAACCTGCCTTCTCG Sbay.....: ttttcctttggtgctacaacagcggaaaacaatacgactaacataacg---ccaagcctctcatttggcgccaagcctgccgaaaataaggatggggaagcttctaaacctgcgttctcg consensus: ***** * * *** * * * *** * ** * ** * ** ** ** ** ** ** * ***** ** ** * * * ** ** ** ** ***** Sbay_spli: BBBBBBB 1560~1680: Scer.....: TTTGGTGCCAAATCAAATGAAGACAAGCAAGATGGAACGGCTAAGCCAGCATTTTCCTTTGGTGCCAAGCCCGCGGAGAAGAATAACAATGAAACCTCCAAGCCGGCATTCTCTTTTGGA Spar.....: ttcggtgctaagccagaagaa---------------------------------------------------------aagaaggacggcgattcctctaagcctgccttctcattcggt Smik.....: TTTGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCATCAAAACCTGCCTTCTCGTTCGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCATCAAAACCTGCCTTCTTGTTTGGT Sbay.....: ttcggtgctaagcctgatgaa---------------------------------------------------------aagaaggatgctgaagcttctaagcctgcattctcgttcggt consensus: ** ***** ** * * *** ***** * ** * ** ** ** ** **** ** ** 1680~1800: Scer.....: GCAAAGTCTGATGAGAAAAAGGATGGTGATGCCTCTAAACCTGCCTTCTCTTTTGGCGCTAAACCGGATGAAAATAAAGCTAGTGCTACTTCTAAGCCTGCCTTCTCATTCGGCGCTAAG Spar.....: gctaagccagatgaaaagaaggataatgattcttccaaaccggccttctcatttggcgctaaatcaaatgaagacgagcaagatggtactgctaaaccagcattttcatttggcactaag Smik.....: GCTAAACCAGATGAAAAGAAAGAAGGAGATGCATCAAAACCTGCCTTCTCGTTTGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCATCAAAACCTGCCCTCTCATTTGGTGCTAAA Sbay.....: gctaagccagaagcaaataagcaagatggacctactaagccagcattttcgtttggtgcaactactgcggagagcaagcctgctagcacacaagcgccaactctttcatttggcgcgaaa consensus: ** ** * ** * ** ** * * * * ** ** ** ** ** ***** ** * * ** * * ** * * ***** ** * ** 1800~1920: Scer.....: CCAGAAGAAAAGAAGGATGATAATTCCTCAAAACCAGCTTTCTCATTTGGTGCCAAATCAAATGAAGACAAGCAAGATGGAACGGCTAAGCCAGCATTTTCCTTTGGTGCCAAGCCCGCG Spar.....: cctgtggataagaaggacaatgaaaccgctaagccggcattctcttttggagcaaagtctgatgagaaaaaagatagtgattcctctaaagctgccttctcattcggtgctaagccagaa Smik.....: CCAGATGAAAAGAAAGAAGGAGATGCACCAAAACCTGCCTTCTCGTTTGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCACCAAAACCTGCCTTCTCATTTGGTGCTAAACCAGAT Sbay.....: cctgcggaaaagaaacaacatgaggcttctaaacaagcattttcatttggt---------------------------------------------------tctgtccctaagcctgaa consensus: ** * ** ***** * * * * ** * ** ** ** ***** * * * ** ** * 1920~2040: Scer.....: GAAAAGAATAACAATGAAACTTCCAAGCCGGCATTCTCTTTTGGAGCAAAGTCCGATGAGAAAAAGGATGGCGATGCCTCTAAACCTGCCTTCTCATTTGGTGCTAAATCGGATG----- Spar.....: gaaaagaagaatggtgattcctctaagcctgccttctcattcggtgctaagccagaagaaaagaaggacggtgattcctctaagcctgtcttctcatttggcgctaaatcaaatg----- Smik.....: GAAAAGAAAGAAGGAGATGCACCAAAGCCTGCCTTCTCATTTGGTGCTAAACCAGATGAAAAGAAAGAAGGAGATGCACCAAAACCTGCGTTCTCGTTCGGTTCTAAGCCGGACGCAAAT Sbay.....: gaaaagaagacggctaacataacc---ccaagcctttcatttggctccaagcccgtggaaaaggtagatgctgaagcctccaaacccgctttttcatttggtgcgaacccaga------- consensus: ******** * * ** * ** ** ** * ** * * ** ** ** * ** * * ** ** * ** ** ** ** * ** * * 2040~2160: Scer.....: -------------------------------------------------AAAAAAAGGACAGTGATTCTTCGAAGCCTGCCTTCTCATTTGGTACTAAATCGAATGAAAAAAAGGACAGT Spar.....: -------------------------------------------------aagacaagcaagatggtactgctaaaccagcattttcatttggcactaagcctgtggataagaaggacaat Smik.....: AAATCTACTAGTACAGAATCAAGCATTTCTTTTGGCACCAAGCCTGTGGAAAAGAAGGACAGTGAGACCACCAAACCAACATTCTCATTTGGAGCAAAATCTGAAGAGAAAAAGAATGAA Sbay.....: --------------------------------------------------------------------------------------------------------agaaaagaagaaagat consensus: ** ** *** * 2160~2280: Scer.....: GGTTCTTCGAAGCCTGCCTTCTCATTCGGTGCTAAACCCGATGAAAAGAAGAATGATGAAGTCTCCAAGCCTGCCTTCTCATTCGGAGCAAAGGCTAACGAAAAGAAAGAAAGTGATGAA Spar.....: gaaaccgctaagccggcattctcttttggagcaaagtctgatgagaaaaaggatggtgatgcctccaaagctgccccttcattcgatgctaagccagaagaaaagaagaatggtgattcc Smik.....: AAAGCTACTAATCCGACGTTTTCTTTTGATTCTAAACCTGAGGAAAAGAAGGATGGTGATGCTTCCAAACCCGCGTTTTCATTTGGAGCCAAAACTAATGACAGGAAAGAAGGTGATGCA Sbay.....: ggagc---------agcattctcgtttggttctaagcctgatgaaaaaaagaatgatgaagccgccaaaccagccttctcatttggaaccaaaactggtgtaaagaaagacgatgatgca consensus: * * ** ** ** * * ** * ** ** ** *** *** *** * **** * ** ***** * * ** * * * *** * **** Smik_spli: BBBBBBB 2280~2400: Scer.....: TCAAAATCAGCCTTTTCATTTGGTTCTAAGCCTACAGGAAAGGAGGAAGGCGATGGGGCGAAGGCTGCCATTTCCTTTGGTGCTAAACCCGAAGAACAGAAATCCAGTGATACGAGCAAG Spar.....: tctaagcctgccttctcatttggatctaaacctatagaaaagaaggaaagtgatggagcgaaaacccccatttcctttggtgctaaacccgaaggacaaaaaggcagtgatacagacaag Smik.....: TCAAAAACTGCTTTTTCTTTTGGATCTAAACCTTTGGAAAAAAA---AGGTGATGGGGCAAAGCCTGCCCTTTCTTTTGGTACAAAACCCGAAGAACAAAAAGGCGATGATACAGATAAA Sbay.....: gcaaaacctgccttttcatttggttccaagcctacagaaaaaaaggaaggtgacgcaacaaagcctaccctttcttttggtgctaaacctcaagaaaagaaagacagtgatgtagccaag consensus: * ** * ** ** ** ***** ** ** *** * *** * * * ** * * ** * ** **** ****** * ***** *** * * *** * **** ** 2400~2520: Scer.....: CCAGCGTTTACTTTTGGTGCTCAAAAAGATAATGAGAAGAAAACAGAGGAATCTTCTACGGGGAAGTCAACCGCAGATGTCAAATCAAGTGATAGCTTGAAATTAAATTCTAAACCAGTA Spar.....: ccagcatttgcttttggtactcaaaaggataatgacaagaaaacagaggattcctccgcagggaagtcaactgcagatgttaaatcaagtaatagcttgaaactaaattcgaaatcagtg Smik.....: TCAGCGTTTACATTTGGTTCTCAAAAAGATAATGAAAAAAAGACTGAGGTTCCTTCTTCCGGAAAGTCAATTGCAGATACTAAATCAAGTGATAACTTGAAACTAAACTCGAAATTAGTG Sbay.....: ccaggattctcgtttggctctcaaaaggacgacgataaaaaaccaATGGATTCCTCGGCAACTAAAACGACCACAGATGCTAATTCTAGTGATAACCTGAAATTAAATGCAAAGCCGGTA consensus: *** ** * ***** ******* ** * ** ** ** * ** * ** * ** * * ***** ** ** *** *** * ***** **** * ** ** 2520~2640: total....: ======= ======= Scer.....: GAATTGAAGCCAGTTTCTCTCGACAATAAAACACTGGACGATTTAGTAACGAAATGGACTAACCAACTAACAGAATCGGCCTCTCATTTTGAACAGTATACCAAAAAAATTAATAGTTGG Spar.....: gaattgaagccagtttctcttgacaacaaaacactcgatgatttagtaacgaaatggaccaatcaactaacagaatccgcctcccattttgaacagtatacaaaaaaaatcaatagttgg Smik.....: GAATTGAAGCCAGTTTCTCTTGATAATAAAACTCTCGATGACTTGGTAACGAAATGGACTAACCAGTTAACAGAATCCGCTTCTCATTTTGAACAGTATACGAAAAAAGTCAATAGTTGG Sbay.....: GAACTAAAGCCAGTTTCTCTTGACAATAAAACACTTGACGATTTAGTAACGAAATGGACCAACCAAGTGACCGAATCAGCTTCTCATTTTGAACAATACACAAAGAAGATTAATAGTTGG consensus: *** * ************** ** ** ***** ** ** ** ** ************** ** ** * ** ***** ** ** *********** ** ** ** ** * ********* Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB 2640~2760: Scer.....: GATCAGGTACTAGTGAAAGGAGGTGAACAAATTAGTCAGTTATACTCAGATGCTGTGATGGCGGAACATAGTCAAAACAAAATAGATCAATCTCTACAATATATCGAGAGGCAACAGGAT Spar.....: gatcaggtattagtgaagggaggtgaacaaattagtcaattatactccgatgctgtgATGGCGGAACATAGTCAAAACAAAATAGATCAATCTCTACAATATATTGAAAGGCAACAAGAC Smik.....: GATCAAGTGTTAGTAAAGGGAGGCGAACAAATTGGTCAGCTATACTCTGATGCTGTAATGGCCGAACATAGCCAGAACAAAATAGACCAATCTCTACAATATATTGAAAGGCAACAAGAC Sbay.....: GACCAAGTATTGGTAAAGGGAGGTGAACAGATTAGTCAGCTATACTCTGATGCTGTGATGGCCGAACATAGTCAAAACAAAATAGATCAATCTTTACAATACATTGAAAGGCAACAAGAC consensus: ** ** ** * ** ** ***** ***** *** **** ******* ******** ***** ******** ** *********** ****** ******* ** ** ******** ** Scer_spli: DDDDDD 2760~2880: Scer.....: GAATTAGAAAACTTCTTAGACAATTTTGAAACCAAGACAGAGGCACTTCTGTCCGATGTTGTGTCTACAAGTTCAGGTGCTGCGGCCAACAATAATGACCAAAAAAGACAACAGGCCTAT Spar.....: GAATTAGAAAACTTCTTAGACAATTTTGAAACCAAGACCGAGGCTCTTCTGTCCGATGTCGTATCTACAAGTTCGGGCGCTGCGGCAAACAATAATGATCAAAAAAGACAGCAGGCCTAT Smik.....: GAATTAGAGAACTTTTTAGACAATTTTGAAACTAAAACAGAAGCTCTTTTGTCTGATGTCGTATCCACAAGTTCAGGTGCTGCAGCCAACAATAATGATCAAAAAAGGCAGCAAGCATAT Sbay.....: GAATTGGAGAACTTTTTAGACAACTTTGAAACGAAAACGGAAGCTCTCCTGTCTGATGTTGTATCGACAAGTTCCGGTGCAGCTGCCAATAACAATGATCAAAAGAGGCAACAAGCTTAT consensus: ***** ** ***** ******** ******** ** ** ** ** ** **** ***** ** ** ******** ** ** ** ** ** ** ***** ***** ** ** ** ** *** 2880~3000: Scer.....: AAGACAGCCCAGACTTTGGACGAAAATTTAAACTCGTTGTCATCCAATCTTTCTTCTCTAATAGTAGAAATCAACAATGTTAGTAATACATTCAACAAAACCACTAACATCGATATAAAC Spar.....: AAGACAGCCCAAACTTTGGACGAAAATTTGAACTCATTATCATCAAATCTTTCTTCTCTAATAGTAGAAATCAACAATGTCAGCAATACGTTCAACAAAACCACTAATATCGATATAAAC Smik.....: AAGACGGCTCAAACTTTGGATGAAAATTTAAATTCATTATCATCTAATCTGTCATCTCTGATCACAGAAATTAACAATGTAAGTAACACATTCAACAAAACCACCACTATCGATATGAAC Sbay.....: AAGACAGCCCAAACTTTGGACGAAAACTTAAATTCATTATCATCTAACCTATCTTCTCTAATCACGGAGATTAACAACGTGAGCAATACATTCAACAAAACCGCTAATATCGATACAAAC consensus: ***** ** ** ******** ***** ** ** ** ** ***** ** ** ** ***** ** ** ** ***** ** ** ** ** ************ * * ******* *** Scer_spli: BBBBBBB Smik_spli: BBBBBBB DDDDDD 3000~3120: Scer.....: AATGAAGACGAAAATATTCAACTAATCAAAATCTTGAATTCACATTTCGACGCTTTAAGGTCACTAGACGATAACTCCACCTCTCTGGAAAAACAAATCAACTCGATAAAGAAATGAtct Spar.....: AATGAAGACGAAAACGTTCAACTAATCAAGATTTTAAATTCACATTTCGACGCTTTAAGGTCATTAGATGATAACTCCTCGTCTTTGGAAAAAAAAATCAACTCGATAAAGAAATAAttg Smik.....: AATGAAGATGAAAATATTCAATTAATAAAAATTTTGAATTCACATTTCGATGCTTTAAGGTCATTAGATGACAACTCCTCCACTTTGGAAAGAAAGATCAATTCCATAAAAAACTGAttg Sbay.....: AATGAGGACGAAAACATTCAACTAATTAAGATTTTGAATTCACATTTCGATGCATTAAGGTCACTGGACGATAGCTCCTCTTCCCTAGAAAAAAAGATAAGTTTGATAAAGAAATGAt-- consensus: ***** ** ***** ***** **** ** ** ** ************** ** ********* * ** ** * **** * * * **** * * ** * * ***** ** * ** 3120~3240: Scer.....: aaaagaaaa-aattcc-ctctattctacacttatt---tgacataggatgtgctatattaaataattatatataggtatcaaaatgta-cgcgatgg-----ttcagaacctgcaattaa Spar.....: aagagaaaagaattccactcagttctcgacttatt---cgacatgggctgtgctatattaaataattatatataagaatcaaaattta-cacaaagggttcattcagaacctgcaattaa Smik.....: caaaaaataaacttcc---ttcttctcaaaataat---tgacatagtttgtgctatattaagtaattatgtacacgtatgaaaatgtaacgcaaagg-----tttagaacctgcatttaa Sbay.....: ----gaaaagccttct--ttctttcttgacttaatctctaacatgtatcgcgctcgattaa-taattatgtacac-------aatata-cgtaaagat----ttgaaggcccctaattaa consensus: ** * *** **** * ** * **** * *** ***** ******* ** * *** ** * * * ** * ** * **** Smik_spli: DDDDDD Sbay_spli: BBBBBB 3240~3360: Scer.....: tttaacacctc--------aatcatacttgtttt----tttcctttttcaagaagtttttgtaatgtgtcgtgccgatctgtaaacgacctggatttttatttcattagacagt-aaata Spar.....: tttaaccccctcccctcctaatcatacttgttttg---tttgctgtttaatgaagtgtttataat-tgctacgttgatccgtaagcgaactagattatgattgcgttagatatttgaata Smik.....: tttaaactctctc------aacaatacttgtgtaacaatttactatttcatgaagtgtt-atgacttgttacacttatctgtgagcaagcctgatttt-actgagataaaaatt-gaatc Sbay.....: ctaaatttccctc------aactgca-ttatgtgcc--ttaaaagttttaatatcattttattctcctttgt-ctggtcta-agccaagccagatact------ggtcgagatt-aaacc consensus: * ** * ** * ** * * ** *** * * ** * ** * * * *** * * * * * ** Sbay_spli: B 3360~3480: Scer.....: cgcaccaaatcagaaccaaagaaaggcttctgtagtgtatgaaactaaaagccacttt--ttgtgatagtttcttcttag-tacttagt---acacaaccaaatattttgcaaaatgaaa Spar.....: tgaaccac-ccatttcca---------ttatctaatatacgtcactaggagccacttt--c-atgatagcttcttcctaa-tatgttgctaaaaacagtcgatttctaagcgcaaaaata Smik.....: aacgccttcttgcactggatg---ggcgtttctaattcaaaagactaaaattcactctgtttgtgagagctttctctttg-tacataat--aaaacacctatatgtt--gctaattttga Sbay.....: cgaacaattccgcatcag--------tacaagagaaataacttattcgtaatcacttcattttacatagtatacaattaaatatattgcaaaattcattaaatttct------ggtgtta consensus: * * * * * **** * ** * * ** * * ** * * * Scer_spli: DDDDDD 3480~3549: Scer.....: tcgattcctaaaagtaattcttaaaa---gtgataatgaatgac------------------------- Spar.....: acgatt--tagtcgtcattttgatatcctgttaatgtgcataacatcacaattaacttcaccatttcgt Smik.....: ccgattcctaattggaaagaagaaagc------------------------------------------ Sbay.....: ccgcttcctagcaagctgtt------------------------------------------------- consensus: ** ** ** Spar_spli: BBBBBBB { alias......: ['RPS21B'] chromosome.: 10 description: Ribosomal protein S21B (S26B) (YS25) end........: 156971 exons......: [(1, 24), (485, 724)] gene.......: RPS21B introns....: [(25, 484)] length.....: 724 name.......: YJL136C plength....: 241 start......: 156248 tdist......: 156248 type.......: ORF up.........: 0 } Scer: 3 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 70)] ->[('Scer', 938)] ->[('Scer', 1042)] ] [ ->[('Scer', 1366)] ] 0~120: Scer.....: tttttatctatacaaatggcttgtgtccgctggtctggtaggtttgaagaatttcctctacgtgatggttgtatgtaaacaaactttcttaaactctgctttttcttactgcccttataa consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: tgtgacgacaactttagcgcaaggtgagggaaaaacaaaacagccaagcgtagttcagtcacatgataaaggcagtagttcaatttggtactaagaaacattttttgcaacatttttgcc consensus: ************************************************************************************************************************ 240~360: Scer.....: ttgttattcgtgaaatgaatatctggcgatattttgcacatatttggttccaacaatagctggttgaacatacatctacttaagttctctcttctttttttttctctttcacttttctac consensus: ************************************************************************************************************************ 360~480: Scer.....: atatgtactgttgccatagtaacgtaaattatgtaaaatacttatccgcatcagggactgagagtccaaaacgtaggcttgaaaaaccaaaaataatgcaacaagtagcataataaaatg consensus: ************************************************************************************************************************ 480~600: Scer.....: ggacaaagaaagcactatcgaggttgtatccgtgtttctatataggagtgaaaacttctggggagattaccttttgacgacaatgtgtttacacccgtacactttatacatccatacatc consensus: ************************************************************************************************************************ 600~720: Scer.....: tccataacttttaaggaatgaaataaatgctttatgtttcgccgcgtctctcgccgggagctggtgggcacgcttcgagcgagttcgctagtgagaccactgcctttattctggttctct consensus: ************************************************************************************************************************ 720~840: Scer.....: tcatcggtggtgggaaccataccagctggctagtgggtccgtttgaagcgaatctcggctctgtataatgtaagaactagtaattgaggattataggattgaaagttttataaacattgt consensus: ************************************************************************************************************************ 840~960: Scer.....: taacgaatttgactttaaaggggaatttcagttaaaaatctgataaaaaaataaaagaatatcaataagccaaaATGGAAAACGATAAGGGTCAATTAGTACGTAAATTATAGCAGATGA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >===================== 960~1080: Scer.....: TGGCGCGCAAAGGAAGAAAGAAGAGGACTGAGTAAGCGTGGACAGACAAGGGAGCATCGACAGAAAAATAAAATTATAATAAGTTAAGTGTGCAAGATTAGTGGTACAAATAGGGTGGGA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: Scer.....: CCAACATGGGTTTATAATCATATTGGTTAGTAATACATCAAATTCAAGAAAATGCAAATAACCCATTTAAATTGGCACAAGTGTTACCTGATACTTTATCATGTGTGGTCTAAGTACACA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1200~1320: Scer.....: TCTCTAAGAAATGTGGCGTTTTAACGACAAAATTGGAATCCCAAGAGAGATATGCTGAAAAGACATCATAATTCCGAATTAGTGGGTTTCCATATTCCAGAACTACTCTTAGAACTTTTC consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1320~1440: Scer.....: TTTCATTCATGTGCAGAATAATTTTACAAGAATATAAGCGCAAATGTACTAACATTGAATAATTTCTTTTTTTACTAGGTTGAATTATATGTTCCAAGAAAGTGTTCTGCTACCAACAGA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ============================================================================>= 1440~1560: Scer.....: ATCATCAAAGCCGATGACCACGCTTCTGTTCAAATCAACGTTGCCAAGGTTGATGAAGAAGGCCGCGCCATTCCAGGTGAATACATCACTTACGCTTTGTCCGGTTACGTTAGATCCAGA consensus: ************************************************************************************************************************ 1560~1680: Scer.....: GGTGAATCCGATGACTCTTTGAACCGTTTGGCTCAAAACGATGGTTTGTTGAAGAACGTTTGGTCTTACTCCCGTTAAaaagataaatattgaataaaaagaagaggggaagtcgtttat consensus: ************************************************************************************************************************ 1680~1800: Scer.....: tcaacgtttccctatcatttattttctattatattatcaatatttaatctatatataacttacgtacatgcaacaactacaataacaaaagaacaataaaaaaagaacatatatcaagag consensus: ************************************************************************************************************************ 1800~1920: Scer.....: gcaaagacggaaaataaggcactgatgtgccaatctaggtagatttttcgttatccttgaaatagcactgttcgaaaacaaaatcgcattgattcgtcaccgcgcggtagccgttaaggg consensus: ************************************************************************************************************************ 1920~2040: Scer.....: ttttgtttacacttactatgacatataaagatgaggggagtagatcaaggatagcgcatccacctccaaaagcatttttttacttatacatcgtgtcatttttttgaatatctatcagaa consensus: ************************************************************************************************************************ 2040~2060: Scer.....: gtaaggtttgttacggagct consensus: ******************** { alias......: ['RPL17B'] chromosome.: 10 description: Ribosomal protein L17B (L20B) (YL17) end........: 91654 exons......: [(1, 309), (627, 872)] gene.......: RPL17B introns....: [(310, 626)] length.....: 872 name.......: YJL177W plength....: 290 start......: 90783 tdist......: 90783 type.......: ORF up.........: 1 } Scer: 4 donors and 6 branches Spar: 4 donors and 4 branches Smik: 5 donors and 2 branches Sbay: 6 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1250), ('Scer', 1245), ('Spar', 1250), ('Spar', 1245), ('Smik', 1250), ('Smik', 1245), ('Sbay', 1250), ('Sbay', 1245)] ->[('Scer', 1293), ('Spar', 1293), ('Smik', 1293), ('Sbay', 1293)] ->[('Scer', 1663), ('Spar', 1663)] ->[('Sbay', 227)] ->[('Sbay', 824)] ->[('Sbay', 1411)] ->[('Smik', 301)] ->[('Smik', 1353)] ] [ ->[('Scer', 1941), ('Spar', 1941), ('Smik', 1941), ('Sbay', 1941)] ->[('Scer', 1594), ('Spar', 1594), ('Smik', 1594)] ->[('Scer', 303), ('Spar', 303)] ->[('Scer', 2268), ('Spar', 2268)] ->[('Sbay', 1581)] ->[('Sbay', 1606)] ->[('Scer', 959)] ->[('Scer', 1439)] ] 0~120: Scer.....: gtcattttttttacattcttcagaggttctacgttatgctcttcgcaaacgtttatccaccacttttcaatagttgtgcttggcggagtatccctttccgtagaagttagtgagctaaat 120~240: Scer.....: tttcccacctgatactttttcaatacatcatgcttctcgcaggacaaggcctgtaccactgtaattatactgatgaagccacatatccaagtcttcgataccatcgtgaaagc-tttcct Spar.....: --------------------------------------------------------------------------------------------------------cttgtaaac-tttcct Smik.....: --------------------------------------------------------------------------------------------------------cgtatagat-ttttct Sbay.....: --------------------------------------------------------------------------------------------------------cttgtcagtgtttcct consensus: * * *** ** Sbay_spli: DDDDDD 240~360: Scer.....: tacctttatctatcgcatcgattgaagatctcagatataaatctaca-gcaga-ctaatatgccactaacctcttgaaaacccgtcgcttacgaaaaagaaggaagacggaaaaaggacg Spar.....: tgccgttatctatcgtatcggt-gcacacctcagatatgaatctaca-gcacagctaatatgctactaacctcttgaaaacccgtcccttacgaaaaaagaagaagctatgaaaaggact Smik.....: tgtctttatctatcctaccgactcaccatctctggtattaatcttta-acacaactaccatgtcagtatcatcttaaaaacccgtcccttacgagaaaag-gaagaatataaaaaagaca Sbay.....: ctttgttacctatccgattgagggcccatctcctactaaaatctacctgtacacct--tatgccactattctcttgacaaaccgtcccttacggaaaaaatagaaacaaaaaaaagaccg consensus: *** ***** * * * *** ***** * * ** *** * ** **** * ** ***** ****** *** * **** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: DDDDDD 360~480: Scer.....: gcatccttttcaatttgcacctggacattctca-cccatacatggc-----ctt-gttttttttttaactgaaacttttttggccgt-ttttgaggatatgatatttcta--tgt----- Spar.....: gca-ccttcattgtttgcacctggacatt--ca-cccaaacatgtt-----ctcagctttttttttaactgaaacttttttgatagt-ttctgggtagatgatcttttca--tgc----- Smik.....: gctttctttacaatttg-acccagacatttaga-cccagacattcta----ttttagtatttcttttactgaaactttttcctcgacgttttaggcaagtgatatctcca--tgc----- Sbay.....: gca---ttttggttttacacctgaacatcctcaacccaaacataatactttttttattattttggtgcctgaatttttcgtctggaatatttccgcgggtgatgttaccagttgcgtttc consensus: ** ** *** *** **** * **** **** * * *** * ***** *** * * * **** * * ** 480~600: Scer.....: ---cggagaacaaa--agtaggcgtgggaa--gtgaagatcttt-cgctctttctgtgatgatctccttccagctaggctcggt-tcgaccctgaggtctgcccctagctccttcctatt Spar.....: ---cgcgaaatgaa--agtaggcgtggcagc-gagaaggtcttt-ctctcttcctgtgatattctccttctagcgatgcgcatcctctgccctgaggtctggcccaagcttctttctatt Smik.....: ---cacggaggaaa--ggtaggcgggccgag-caggaggccactgcgctcttccgatgacaatctccttccaaggagat------tccaccatagg------cctaagcatcggcctgtt Sbay.....: ttacgctaagggaaccatcgtgcacgcagagaatggataccagttccaggctctagtgcgcatcctctctgggcagaacacctctctgggctggtgcttctgtccaaggatttcgctttc consensus: * * ** ** * * * * * * * ** ** ** * * * ** ** * 600~720: Scer.....: ccaaacggaataccaaatgtccagcccgtgacaatgcagcagggtggctaatttttcatccagagtt------------tgcaga---atgttgg--ttctcacaa----actcagagag Spar.....: ccaagcagaataccaagtgttcagcctatgcc----------ggtggctaatttttcattcagactt------------tgctga---attttgg--ttctcacaa----actcagagag Smik.....: acaagcagaattcgaggagttcggcctacgcaaacgcagc---atggctattttttcatcaagcgttgtaacgatgccgtgcagag-gatgttgg--ctcccacac----actcagagag Sbay.....: ccaggcagaaacacaacggtgtaacctgtgccgat--cgcagtgtggctaattttcgttggaactttgtagtgatggcatgcagagagatgctggaatgcttgcaacaccgcttcgagag consensus: ** * *** * ** ** * ****** **** * * ** *** ** ** *** * ** ** ***** 720~840: Scer.....: aattggcggatgatgggtaactgtg-agaggaagtgtctggatttgatcgt---------atttgttaaattcatcaacaccttttatgcagaggtgtagtagtgtag-gtagcccttag Spar.....: aattggtggatgatgggtaactgtg-agcggtagagtgtaggtttgatcgt---------atttgtaaaattcatcaacatcttt-atgcagaggtgtagtaatgtag-gtagcgcttag Smik.....: aattgatggatgttgggtaactgtg-agcagtagattgtgggttcaattgt---------atttgttaaatttatcaacatcttc-acgtaaaggtgtggtaacaaggtgtagcccttag Sbay.....: aatcgatggatgatgggtaactgcacggcatctgagtgtgggtttggttgtggtattggtatttgtcaattttgtatacaccttg-atgtagtagcgaattgatgtga-gtagcccttag consensus: *** * ***** ********** * * * * * ** * ** ****** ** ** * *** *** * * * * * * ***** ***** Sbay_spli: DDDDDDD 840~960: Scer.....: taattggtgtttattattgtctatatagaa-atttctttt-tagtgtagcttgtactctttccctgc---att---attt---ttgttttattgactttt-gtcttggt-gaatcaaaaa Spar.....: tagttattggttattattgtttatagagaa-atttctttt-tagtgcagattgtactctttccttgc---att---agtt---ttgtcttattgactttttgtcttggt-gaattaaaag Smik.....: taattagtgattattgttgt-tattgagaa-gtttctctt-tagtgtcatttgtactcttttcttgattaatttggattt---tagtttgattgtcctttttgtatttt-atatcaaaag Sbay.....: tagttgattgtagttgttgtttatagtaattatttcttttgtatcgtagtttgt-ctctttccttagcttactttattttagttagttctttttgctttcttttatagtcaaatcaatag consensus: ** ** * * ** **** *** * ***** ** ** * **** ****** * * * * ** * ** ** * ** * * ** ** * Scer_spli: B 960~1080: Scer.....: attaacgaaacgaacaaatttaaaATGGCAAGATACGGTGCTACTTCAACCAACCCAGCTAAATCTGCGTCAGCTCGTGGTTCTTATTTGCGTGTTTCTTTCAAGAACACCAGGGAAACT Spar.....: attaacgaaacaaacaaatttaaaATGGCAAGATACGGTGCTACTTCGACCAACCCAGCTAAATCTGCATCAGCTCGTGGTTCTTATTTGCGTGTTTCTTTCAAGAACACCAGAGAAACT Smik.....: attaacgaaacgaacaaattcaaaATGGCAAGATACGGTGCTACTTCAACCAATCCAGCTAAATCTGCATCAGCTCGTGGGTCTTACTTGCGTGTTTCTTTCAAGAACACCAGAGAAACC Sbay.....: atcaacgaaacgaacaaatttaaaATGGCAAGATACGGTGCTACTTCAACCAATCCAGCTAAATCTGCATCTGCTCGTGGTTCTTACTTGCGTGTTTCTTTCAAGAACACCAGAGAAACC consensus: ** ******** ******** ************************** ***** ************** ** ******** ***** ************************** ***** Scer_spli: BBBBBB 1080~1200: Scer.....: GCTCAAGCCATTAATGGTTGGGAATTGACTAAGGCTCAAAAATACTTGGACCAAGTTTTGGACCACCAAAGAGCCATCCCATTCAGAAGATTTAACTCCTCTATTGGTAGAACTGCCCAA Spar.....: GCTCAAGCCATTAACGGTTGGGAATTGACTAAGGCTCAAAAATACTTGGACCAGGTTTTGGACCACCAAAGAGCCATCCCATTTAGAAGATTCAACTCCTCTATCGGTAGAACTGCCCAA Smik.....: GCTCAAGCTATTAATGGTTGGGAATTGACCAAGGCTCAAAAATACTTGGACCAAGTTTTGGACCACCAAAGAGCCATTCCATTCAGAAGATTTAACTCCTCTATTGGTAGAACTGCCCAA Sbay.....: GCTCAAGCCATCAATGGTTGGGAATTGACCAAGGCTCAAAAGTACTTGGACCAAGTTTTGGACCACCAAAGAGCTATCCCATTCAGAAGATTTAACTCCTCTATTGGTAGAACCGCTCAA consensus: ******** ** ** ************** *********** *********** ******************** ** ***** ******** *********** ******** ** *** 1200~1320: total....: ====== Scer.....: GGTAAGGAATTTGGTGTCACCAAGGCTAGATGGCCAGCTAAATCTGTTAAGTTCGTTCAAGGTTTGTTGCAAAACGCCGCTGCCAATGCTGAAGTATGTTTAAAATGAAAATAT----GA Spar.....: GGTAAGGAATTCGGTGTCACCAAGGCTAGATGGCCAGCTAAATCTGTTAAGTTCGTTCAAGGTTTGCTGCAAAACGCTGCTGCCAATGCTGAAGTATGTTTGGAATGAtattgt----ga Smik.....: GGTAAGGAATTTGGTGTCACCAAAGCCAGATGGCCAGCTAAATCTGTTAAGTTCGTTCAAGGTTTGTTGCAAAACGCTGCTGCCAATGCTGAAGTATGTTTAAAATGAtattgt----gt Sbay.....: GGTAAGGAATTCGGTGTCACCAAGGCTAGATGGCCAGCTAAGTCTGTTAAGTTCGTTCAAGGTTTGTTGCAAAACGCAGCTGCCAACGCTGAAGTATGTTTAAAATGAtattatcgtgga consensus: *********** *********** ** ************** ************************ ********** ******** ************** ***** * * * * Scer_spli: DDDDDDDDDDD DDDDDD Spar_spli: DDDDDDDDDDD DDDDDD Smik_spli: DDDDDDDDDDD DDDDDD Sbay_spli: DDDDDDDDDDD DDDDDD known....: >========================== 1320~1440: Scer.....: AAAATAAGATTGAAAAATAATAATGATGTGTTGACGGGAGATGATAAAGTATTAGAATATG----TTCATATGTGTTGCATCCTATTTTCTGCATGAATGCACGATTCGAAAGAGCTAAA Spar.....: aaattaagatattgaaaaaataatgatgtgccaa----------taacgtattagactgag----tttacacgtgttacatcctacat-ctgcgtgaattca-ggtgtgaaaaagctaaa Smik.....: aaaacaagactatgaaaaaattactctgtgccag----------ttaagtgttaagatgggatcactcacacgtggtgcctcc-atgt-ctgtaagaatataggatctgaaaaatttgat Sbay.....: aatatgatatgaaaaaaaaaaaatagtgcgccaa----------taaaatattgaactgag----tttccatgtgctacatcc-atgc-gtgtatgaatcctgcattgaggaagtaaaaa consensus: ** * * *** ** * ** * * * * ** * * * * *** * * *** * ** **** * * * Scer_spli: B Smik_spli: DDDDDDDDDDDDDDDD Sbay_spli: DDDDDD known....: ======================================================================================================================== 1440~1560: Scer.....: ATTAACAGTTTTCCAAATGAAAGAGAAAAGAAATAAA--GAAGAAATGGGACATGCAAAAAGGAA-CTATGG--ATACCTATTAAGCGTATAG-------CATAGTGTTTTCTAATCTTA Spar.....: tttcgcagttatg-----gaaagagagagagaataga--aaggaaa-gggatatgcaa--agaaa-ttatgg--atttccactaagagtataataa----cacagtgtcttctaatctta Smik.....: tctcagggctaaatcattgaaacagaacaaaaataaacagaaagaagggaaagcgcatgcagaaaactaagg--acttccgata-gagcatcgta-----cagagtttttttta-tctca Sbay.....: tcccaaaatcaactattgaaaataacccagagacaat--gacgaaacgttagaattttgtggaatcctgttatagcactggatacagtcacctgtttctctatcttatttctttttttca consensus: *** * * * * ** * * * * * ** * * * * * * * * * Scer_spli: BBBBBB known....: ======================================================================================================================== 1560~1680: Scer.....: TTTTTTCTTACACTACGACTTTAA----AATTTTTACTAACAATGA-ATTACTATTA--ATTTTCTTTTTAAAACAGGCTAAGGGTCTAGATGCTACCAAGTTGTACGTTTCTCACATCC Spar.....: ttttttcttacactatgaatttgc----aatttttactaacaagat-attattatta--attttttttttaa--caggctaagggtctagatgctaccaagttgtacgtttctcacatcc Smik.....: ttt--tcttacattatgccattgc----aatttttactaactggat-attattttttt-attttttttttaa--caggctaagggtctagatgccaccaagctatacgtttctcacatcc Sbay.....: ccatgcatgacattacaagattactaacaagattttataatattattactaatattattattatttttctta--caggctaagggtctagatggtaccaaactatacgtttctcacatcc consensus: * *** ** ** ** *** *** * ** * ** *** * *** * * ******************* ***** * **************** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Smik_spli: BBBBBBB Sbay_spli: BBBBBBB BBBBBBB known....: ===========================================================================>= 1680~1800: Scer.....: AAGTTAACCAAGCACCAAAGCAAAGAAGAAGAACTTACAGAGCCCACGGTAGAATCAACAAGTACGAATCTTCTCCATCTCACATTGAATTGGTTGTTACCGAAAAGGAAGAAGCTGTCG Spar.....: aagttaaccaagctccaaagcaaagaagaagaacttacagagcccacggtagaatcaacaaatacgaatcttctccatctcacattgaattagttgtcactgaaaaggaagaagctgtct Smik.....: aagttaaccaagctccaaagcaaagaagaagaacttacagagcccatggtagaatcaacaagtacgaatcttctccatcccacattgaattagttgtcacggaaaaggaagaagctgtcg Sbay.....: aagttaaccaagctccaaagcaaagaagaagaactttcagagcccacggtagaatcaacaagtacgaatcttctccatctcacattgaattagttgtcactgaaaaggaagaagctgttg consensus: ************* ********************** ********* ************** ***************** *********** ***** ** ***************** 1800~1920: Scer.....: CCAAGGCTGCTGAAAAGAAGGTTGTCAGATTGACTTCTAGACAAAGAGGTAGAATTGCTGCCCAAAAACGTATCTCTGCTTAAatgcttttttaattttaaaatcttttaaagtgaatat Spar.....: ccaaggctgctgaaaagaaggttgtcagattgacttctagacaaagaggtagaattgctgcccaaaaacgtatctctgcttaaacgcttttt-aattttgaaatcttttaaaatgaatat Smik.....: ccaaggctgctgaaaagaaggttatcagattgacttctagacaaagaggtagaattgctgcccaaaaacgtatctctgcttaaacgtttttttaatttgagaatcttttaaagtgaatat Sbay.....: ccaaggccgctgaaaagaaggccgtcagattaacttctagacaaagaggtagaatcgctgcccaaaaacgtatctccgcttaaatgcttttt----------accttttaaaatgaatat consensus: ******* ************* ******* *********************** ******************** ******* * ***** * ******** ******* 1920~2040: total....: ======= Scer.....: ttgattt-atatactactatatactaatttgtttaggccaatacacagaatcaaaa-tcaaactaagaacaacacag--aacaagaaaaat-------aacttttgataaaggctcttt- Spar.....: ttgattttatatactactttatactaatttatttagaccaatacacagaatcaaaaatcaaactaagaacaacgtagcaaacagcaaaaat-------aatctttgacaaaggtttcatg Smik.....: ttgattttatatactattatatactaatttttttagaccaatacacagaatcaaaa-tcaaactaggaataaaatagcgaacaggaaaattccccc-aagtctttaacaagtttcctttc Sbay.....: ttgattttatatattattatatactaatttctttagaccaatacacaaaatcagaa-ttaaatcaaaaataacacaataaacagctcagtggtttctggatatataatgtaggtttcata consensus: ******* ***** ** * *********** ***** ********** ***** ** * *** * ** ** * **** * * * * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB 2040~2160: Scer.....: --taa-ataaaaaaaatagaaaaaatagaaaataacacaattatag----atatata--------tctacatgtacata-------acatgtctagtcgaatctagagaaatgggataaa Spar.....: tgtaa-aaaagaaaagaggaataaataaaaaataacacaattatag----atatatacgtatatatctacatgtacata-------acatatccagtcgaatctacagaaatgggataaa Smik.....: --aaa-gtaaaagagaaatgtcgcctagaaaataacacaattataggtatatatatatatatatatctacatgtacacg-------acgtatctagttacaactagaggagagggataaa Sbay.....: ggtaacaaaagataaacagaaaattttagaaaagaagtaaaaataacacaat-tataaacacatatctacatgtacatatatttatacagatctagtgaaatctagacaagtaagataaa consensus: ** ** * * * *** * ** *** ** **** ************ ** ** *** * *** * * ****** 2160~2280: Scer.....: aatcagagagaagccaagtcaagtgacgcaccatt--------aaagaaatgaacctagaagaaagaaaataagcaaaaatatagagcgaaacaaa-atagaaagtgttactaatgaaga Spar.....: aatcagagagaagccaagtcgagtgacgcaccatt--------aaagaaataaacccagaaaaaagaaaataaaaaaaaatatagagtaaaacaaa-atagaaagcattactaatgaaga Smik.....: tatcagagaaaatccaaatcaagtgacacgccatt--------aaagaaac---ccaaaaaaaatgataataa--aaaaatatagagtaaagcaaacatagaaagtattagtaatgaagg Sbay.....: agt---aaagaagccgagttgaacgatatatcattcctatactaaagaaataaccccaggaaaaaagaaataa----agtgataaagtaaaatgaa-ataaaaagtattaccaatgaaga consensus: * * * ** ** * * * ** **** ******* ** * * ** ***** * *** ** ** ** *** **** *** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2280~2323: Scer.....: ataattacaacaaaaacaaaaa-tgatctccatgtgtcattg- Spar.....: ataattacaacaacaacaaaaaatggcctccatgtgtcattt- Smik.....: ataattacaaca---acgaaa--tggcatcaatgtattattt- Sbay.....: agaattgcaaca---acaaaaa-cggcttttttgtgatcccgt consensus: * **** ***** ** *** * * *** { alias......: ['RPL39', 'PUB2', 'RPL46', 'SPB2'] chromosome.: 10 description: Ribosomal protein L39 (L46) (YL40) end........: 76473 exons......: [(1, 6), (393, 542)] gene.......: RPL39 introns....: [(7, 392)] length.....: 542 name.......: YJL189W plength....: 180 start......: 75932 tdist......: 75932 type.......: ORF up.........: 1 } Scer: 5 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 9)] ->[('Scer', 251)] ->[('Scer', 636)] ->[('Scer', 990)] ->[('Scer', 1465)] ] [ ->[('Scer', 113)] ->[('Scer', 467)] ->[('Scer', 961)] ] 0~120: Scer.....: cttggatatgtatgttggtcttgttttataaaaaatactagaactgaaaggccattaaaaaaccttacaatttaagaattgaatagtcgattaagattatttagattgaaattgactaac consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB 120~240: Scer.....: tgcaaacccatattcaagaattatttcacatcttccagcgagtaaacatgccgctggtaatcgcgcgtcctcaatatttgagtttttcaaatagtgaggtgtggatgtatagaggaatta consensus: ************************************************************************************************************************ 240~360: Scer.....: cacacttttaagtatgtgatgtatgggcgcacagtaccaatttaactttttttttttttcattttttagcttgattttcaaaaaacttatgggcgttttaggctccggctcaaactacca consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 360~480: Scer.....: ccaccacgcggcaggccgaggcaaacagtacgccttggcggggacgccgaagcgactccttctgttccaagctcaatggtccttgcgtttacgctcgcgcgtgggctaactaacgcaatt consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 480~600: Scer.....: cggcttttgggctgtcgagaaccgagaattattcttcgccttgatagatactttaaaacttctacttaatatactttctacaatttttggtacattcatattatactgaaaattcgaaaa consensus: ************************************************************************************************************************ 600~720: Scer.....: agacaagcaaataaacacagatagatcaacATGGCTGTATGTTAGAAAGATATTATAAATCCCAGTTAGATGCTGAACTGATCAATAGCAAATTATAAACCACATCCATCTAAATGACCT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >=================================================================================== 720~840: Scer.....: TACCACCTACAATTTGGATTTGAAATAGAAGCAATGTGTAAAATATAGGGAAAGGATTAGGAGTGTTAACCATACTAAAATTTTTCTTATCCGAAACAGAAATCTAAAGTCGCCACTACG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 840~960: Scer.....: CAGATTAAAATATGGTCATAAACTGCTTATTCTGAGAACTTTTGGTGGTCCAGCGTGGTTTATGTCAGGTGGTATTGCCTTGGATCCGTGAATGCATCATATTGATGAGTTTGAACATTG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 960~1080: Scer.....: TTACTAACATTTTTTACAATTGTACACTTCGTATGTGCACGATATGTTTCCCTTTTAATTAGGCTCAAAAGTCTTTCAGAATCAAGCAAAAAATGGCTAAGGCTAAGAAGCAAAACAGAC consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB DDDDDD known....: ============================================================>= 1080~1200: Scer.....: CATTGCCACAATGGATCAGATTGAGAACCAACAACACTATCCGTTACAACGCTAAGAGAAGAAACTGGAGAAGAACCAAGATGAACATCTAAgcgaagaacatatttatgcttcaaactt consensus: ************************************************************************************************************************ 1200~1320: Scer.....: tttgtcatttgtcttccatccttcccttattctcaatatatatgtaatacgtcgtatttgatatatatatatatatatatataatataatttaacggttgttatctgctacatctgtaaa consensus: ************************************************************************************************************************ 1320~1440: Scer.....: ataaaaataaaaatgcttgaagcggctgtacttaaaataaactcatctaaggttttacatggtattactaccggactgcaattacactctttttcgttattggattatttatacaatgcg consensus: ************************************************************************************************************************ 1440~1500: Scer.....: gcccataagcacgtgtgggaaaaaagtatgtaaataaaacaaggttttttgttccattta consensus: ************************************************************ Scer_spli: DDDDDD { alias......: ['RPS14B', 'CRY2'] chromosome.: 10 description: Ribosomal protein S14B (rp59B) end........: 74610 exons......: [(1, 10), (419, 825)] gene.......: RPS14B introns....: [(11, 418)] length.....: 825 name.......: YJL191W plength....: 275 start......: 73786 tdist......: 73786 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 7 donors and 1 branches Smik: 4 donors and 2 branches Sbay: 3 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 402), ('Spar', 402), ('Smik', 402), ('Sbay', 402)] ->[('Scer', 956), ('Spar', 956), ('Smik', 956), ('Sbay', 956)] ->[('Spar', 1472), ('Smik', 1472)] ->[('Sbay', 1027)] ->[('Scer', 317)] ->[('Smik', 1340)] ->[('Spar', 479)] ->[('Spar', 1262)] ->[('Spar', 1390)] ->[('Spar', 1498)] ] [ ->[('Scer', 799), ('Spar', 799), ('Smik', 799), ('Sbay', 799)] ->[('Sbay', 353)] ->[('Scer', 1255)] ->[('Smik', 51)] ] 0~120: Scer.....: cgtcacactgctctttcacttgttgatcaaatttact---ttgatgatatttaatggcttgacaaattcgttcatcttaatttcatacataatttcatcctgaaatcctcgatcatttt- Spar.....: ttttgcactgctctcttaattgttaatcgagtttacc---ttcatattgtttaatgacttgataaattcgttgatcttaatttcatacataatttcatcctaaaatcctcgatcattttt Smik.....: ctctattgcgcttgcttaatcggtgttcgaaatcactgtcttagaaatgtaaattaacttcatgttttcgctaatcttaccttcatacataatttcatactagaatcctcgatcttttt- Sbay.....: ttcagtagcgctttcttgaatgttcctcgaa-ttgcttcttcaggactctctagtgacttcatttattcgttgatctcaatttccttcataatttaatctcaaaaacctcgatgttttt- consensus: *** * * * ** * * * * * * * * *** * **** * **** * *** * ******** ** ** ******* **** Smik_spli: BBBBBBB 120~240: Scer.....: cgagactgtttttcgagctt--gattttatatgtggtgtaaacacatcattgtacatccttgcaccacactgaaaa-gaatatggaaaaaatttcaaactttttaatgggtgatagactt Spar.....: cgagactgtttctc-aattt--gttttcatgtgtggtgtaaacgcaacattttaaatcctttcaccacactataac-ttatatgaagaaaatcctgttttttttttgggggcactcacgt Smik.....: -tagactgttttcatcatttccaatttaaaatgtggtgtaaaagctacaaattaaatccttgcaccacaccatatg-tcttaacgcaataatttta---cttttacagtttaacata--- Sbay.....: caagactgttttcaacaatcg-agtttagtgcgtggtgtaaaactggcactatccatcctttcaccacactgtaaacgcttaatacaaaaatgtatttttttttatggaagctttgagtt consensus: ********* * *** ********** ** * ****** ******** * ** * *** **** * * 240~360: Scer.....: gaaaaacaaaacggaataaaagatatagtcgcaagaact-tgccttctacgagtataaaagcggtactattccttctgtat-gcatcttcatcgcaagag----------agaaaaagac Spar.....: agaaaatgaaacggaatagaa-atatggttgcaacaattctgtcctctcc--gtatataagaagcaatgtttcttcagcac-gcatcaggatcacagcagtccagcaattacaaaacaat Smik.....: agaaaatggacaggattagaacgcatgatagcaatgatt---cgttctgagcgtatataagaagtgccgtttcttcagtattgaagtctaaaacctacagtc--ataagtgaaaagtaaa Sbay.....: gtaaaaaaga------tacaacgcacaattgcggtgatt---tggtcttggcctatataagaagctattgatttttaaaat--cgactcacactttagatctt----aaaaataactaac consensus: **** * ** ** * * ** * * *** **** *** * ** * * ** * Scer_spli: DDDDDDD Sbay_spli: BBBBBBB 360~480: total....: ====== Scer.....: tgaaatcaacaactc-ccaataacaattaagaATGGCTAACGGTACGTGAAAGGGGTGATATCCTGTTTAAAACCATTTAGTTATTCTTTTTTTCAGATGGAGACTGTGATCGGGTAGCG Spar.....: tgtaatcaaaaactcatcgataacaattaagaatggctaacggtacgtgaaaggggtgatatcctgtttaaaaccatttagttattctttttctcagatgcggactgtaattgggcgacg Smik.....: cagacactagaactcatcaacaacaaataagaatggctaacggtacgtgaaaggggtgatatcctgtttaaaaccatttagttattcttttt-tcagatgcagactatcattgagggaca Sbay.....: taaaagctataactcatcgataataattaagaatggctaacggtacgtgaaaggggtgatatcctgtttaaaaccatttagttattcttttt-tcagatgcagactagaaatgtacggcg consensus: * * * ***** * * ** ** ***************************************************************** ******* **** * * * Scer_spli: DDDDDD Spar_spli: DDDDDD D Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >============================================================================= 480~600: Scer.....: CATGATGTTATTATTGGAATTTTATTTTTTTTGCAACTTTGAAGCACTCCTAACTATATTGCAATAGTGTTATGAGATGCTACTTATGTTTGTAAGGCCATGAAATTCTGTAATACGGAG Spar.....: tatgatgttatcattggaattct--catttttacaactttgaagccttcctagctatctagtaatagcgttaagaggcgccgataatgtttgtaatact-tgaagttctgtggtacagag Smik.....: cgcaacgttattatcagaatttt-cattttttgcaactttagggtacttctaggtacctcgtaagagtgttgaatgatgctacttgtg---gtaatgacatgaaatttcg-agcgcaaac Sbay.....: cgtgttgt-gttactgtagttttggggtttttttggatatgaaatactatt-gctatcttttaagaa-gcaaagtagctttgctcatatccattgatcc-tgaacttttgtgatgttaaa consensus: ** * * * ** * ***** * * * * ** * ** * * * * * **** ** * * Spar_spli: DDDDD known....: ======================================================================================================================== 600~720: Scer.....: T-------TAAAATTTCTGCAATAAAGC--ACTTCAATGCTATTGTGTTATAGAGGCTCTGCGCTC-ACCCTTAATACTGTATCATCTGTAATAAAGAATGTTTATCTTAAAAGGATTGT Spar.....: tat-----taatttttttgagatgtaat--atttcaatcacattgtattctagaaagtcggcgttttgtctttagtgctgtatggtctgtaacaaagaatgttcatcttaaaaggattgt Smik.....: tat-----tca---ttttgaaataaca---attccaatgacattgc---caagaaactcatcgtctcctctatagtactgtatcttttgtaataaaggattactatcttaaaagaattgt Sbay.....: taccattctgagctaacgagtgtgaaatacacctcgacggctcagtattctaagaacccaccgttttcatttcagtactgtattatctgtaattaagaatatttatcttaaaaagattgt consensus: * * * * * * * * * * ** * * ****** * ***** *** ** ********* ***** known....: ======================================================================================================================== 720~840: total....: ======= Scer.....: AACTAAATGGTTGTTAGATAGTGACT---CATTCGTTTATT--TTTTAATAATCGAAAA-AGCAGAA----GTTCTGTTTACTAACAACTATACCTCTTATCATGTATAGACCTTGTTCA Spar.....: aactaaatggttgttagacagtgact---cattcgtttatt--ttataataatcggaaa-actagaa----acttcgtttactaacaactatacctcttatcatgtatagaccttgttca Smik.....: aactaaatggttgttag---gtggct---ctttcgtttatt--tt-caataatcggaaa-ctaagaatttcgttttctttactaacaattatatttcttatcatgtatagaccttgttca Sbay.....: aactaaatggttgttagatagtgacttttcgttcgcttattattttcaataatcggaaatcgaaggaatttcatttttttactaacaactatacctcttatcatgtatagaccttgttca consensus: ***************** *** ** * **** ***** ** ******** *** ** * * *********** **** ************************* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ============================================================================================================>= 840~960: total....: ==== Scer.....: AGCTCGCGATAACTCTCAAGTCTTTGGTGTTGCCAGAATCTACGCCTCCTTTAACGATACCTTTGTACATGTTACCGATTTATCTGGTAAGGAAACTATCGCCAGAGTTACTGGTGGTAT Spar.....: agctcgcgataactcccaagtctttggtgttgccagaatctacgcctcctttaacgatacctttgtccacgttaccgacttatctggtaaggaaactatcgccagagttactggtggtAT Smik.....: agctcgtgataactcccaagttttcggtgtcgctagaatctacgcctccttcaacgatactttcgtccatgttaccgatctgtctggtaaggaaaccatcgccagggttactggtggtAT Sbay.....: agctcgtgacaattcccaagtttttggtgttgctagaatctttgcttctttcaacgatactttcgtccatgttaccgatctatctggtaaggaaaccatcgccagagttactggtggtAT consensus: ****** ** ** ** ***** ** ***** ** ******* ** ** ** ******** ** ** ** ******** * ************** ******** ************** Scer_spli: DDDD Spar_spli: DDDD Smik_spli: DDDD Sbay_spli: DDDD 960~1080: total....: == Scer.....: GAAAGTCAAGGCCGACAGAGACGAATCATCTCCATACGCTGCTATGTTGGCTGCCCAAGATGTTGCCGCTAAGTGTAAGGAAGTCGGTATCACTGCCGTTCACGTTAAGATCAGAGCTAC Spar.....: GAAGGTCAAGGCCGACAGAGACGAATCATCTCCATATGCTGCTATGTTGGCCGCACAAGATGTTGCAGCCAAGTGTAAGGAAGTTGGCATTACCGCTGTCCATGTTAAAATCAGAGCTAC Smik.....: GAAAGTGAAGGCAGACAGAGATGAATCTTCTCCATACGCAGCTATGTTGGCTGCTCAAGATGTTGCCGCTAAGTGTAAGGAAGTTGGTATCACTGCTGTTCACGTTAAAATTAGAGCTAC Sbay.....: GAAGGTCAAGGCTGACAGAGATGAATCTTCTCCATACGCTGCTATGTTGGCTGCCCAAGATGTCGCTGTTAAGTGTAAGGAAGTCGGTATCACTGCCGTCCACGTCAAAATCAGAGCTAC consensus: *** ** ***** ******** ***** ******** ** *********** ** ******** ** * ************** ** ** ** ** ** ** ** ** ** ******** Scer_spli: DD Spar_spli: DD Smik_spli: DD Sbay_spli: DD DDDDDD 1080~1200: Scer.....: TGGTGGTACCAGAACCAAGACCCCAGGACCAGGTGGTCAAGCCGCTTTGAGAGCTTTGGCCAGATCTGGTTTGAGGATTGGCCGTATCGAAGACGTTACTCCAGTCCCATCAGACTCCAC Spar.....: TGGTGGTACCAGAACCAAGACCCCAGGCCCAGGTGGTCAAGCCGCTTTGAGAGCCTTGGCTAGATCTGGTTTGAGAATCGGTCGTATCGAAGACGTTACTCCAGTTCCATCTGACTCCAC Smik.....: CGGTGGTACTAGAACCAAGACTCCAGGTCCAGGTGGCCAAGCCGCTTTGAGAGCTTTGGCCAGATCTGGTTTAAGAATTGGACGTATCGAAGATGTTACCCCAGTTCCATCTGACTCTAC Sbay.....: TGGTGGTACTAGAACCAAGACTCCAGGTCCAGGTGGTCAAGCTGCTTTGAGAGCTTTGGCTAGATCCGGTTTGAGAATTGGTCGTATCGAGGATGTTACCCCAGTTCCATCTGACTCCAC consensus: ******** *********** ***** ******** ***** *********** ***** ***** ***** ** ** ** ******** ** ***** ***** ***** ***** ** 1200~1320: Scer.....: CAGAAAGAAGGGTGGTAGAAGAGGTAGAAGATTATGAtttcttttttttttactctattaacgca---tggaaat-acggctttaccttctcacat-aaatatagtttgtttaattaata Spar.....: CAGAAAGAAGGGTGGTAGAAGGGGTAGAAGATTATGAttt-tcttttcgctgctctatcaacgca---tgtaatc-atatctttgctttctcacat-aaatatagtttgtttaattaata Smik.....: CAGAAAGAAGGGTGGTAGAAGAGGTAGAAGATTATAAtct-----tttgcagttctatcaacacactatggaatc-at-ttttccctttctcatat-acgcatagtttgtataattaatt Sbay.....: CAGAAAGAAGGGTGGTAGAAGAGGTAGAAGATTATGAttt--gctcttgctgctttgttcacgcaatatagaatccatatctctgcttattcattttaaatatcatt-gtataattaata consensus: ********************* ************* ** * * * * * ** ** * ** * * * * *** * * ** ** ** ******** Scer_spli: BBBBBBB Spar_spli: DDDDDDDDD 1320~1440: Scer.....: aagcca--atataaacattt-gcatattcgacttcgtgcatgcagaaatgcggcagataaattcatttctgtc--taatctttt-gaacagttttaaa-gtacaaatatattagtattta Spar.....: aggcca--atataaacattt-gcattttggaactcctgcatttaccaatatagcagacaaaatc-tgcgtgtcagtaatctttttgaacagttttaaaagtacaaatatattagtattta Smik.....: aggcca--ataatagcatta-gcatgttccaacttgaacgtatatacctgtgatgccgaaaagc-tgcgttcctgtaatctttttgaacgattttaaaagtacaaatatattagtattta Sbay.....: aaaccacaatacaagcattttgcatatccaaacttgtgcattgttaaattaagcgaaca------ttgctttccttaattttttttaacaattttaaaagtacaaatat--tagtattta consensus: * *** *** * **** **** * * * * * * * * * * **** **** *** ******* ********** ********* Spar_spli: DDDDDD Smik_spli: DDDDDDD 1440~1553: Scer.....: acaggaaaactaaaaaaa-tgtataataagaaat---gagtaaagttatgaggctatcttgtgtttattatagtatataaa-gctaccgaaaaggttgttgtaacaag-tagc Spar.....: acaggaaaactaaaaaaaatgtataataatacgt---gagtaaaattatgaggctatggtgagtttattatattatataaa-gctactgaagaagttgttgtaacaaa-tagc Smik.....: acaggaaaactaaaaaa--tgtataataatacgt---gagtaaaattatgaggctatggtgtgtttattatattatataaa-gttactgagaaggttactgcaacaaaatagc Sbay.....: gtaggaaaactaaaaaa--tgtataatattacgtatggggtaaaattatgagactatggtttgtttgttatgttatataaaagttattgaaaaagtaattttaacgaa-tagc consensus: *************** ********* * * * ***** ******* **** * **** **** ******** * ** ** * ** * *** * **** Spar_spli: DDDDDDDDD DDDDDD Smik_spli: DDDDDDDDD { alias......: ['NCE101', 'YJL206C-A'] chromosome.: 10 description: (putative) ubiquitin-protein ligase end........: 50443 exons......: [(1, 32), (176, 305)] gene.......: NCE101 introns....: [(33, 175)] length.....: 305 name.......: YJL205C-A plength....: 101 start......: 50139 tdist......: 50139 type.......: ORF up.........: 0 } Scer: 2 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 36)] ->[('Scer', 217)] ] [ ->[('Scer', 272)] ] 0~120: Scer.....: attcctatcaatgattaattatattactctatataggtatgaagtgcggaaataaaagactgttcacatattagattattcaagattacgcgggctctatttttccctgttagccacacg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: cacacaaggggcatacaaatgttcactccatttataagaggattccacacaagatcatcgataacATGGTTCAGTACGCTCCCTTTCTATTAGGAAAGTATGTTCATTCTTCATACGCTA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >====================== 240~360: Scer.....: TTCTATTTTTTTTTTTTTCACACTTATTCTTTTACTAACGCATAGTTAACCATTTGCTGTTTCGAAGAGGCAACATCAAACAAGTCGATGTGCTCTTTCCCAAGCTGGTCTCTATTGCAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================>= 360~480: Scer.....: ATTTTCTGATCCGTTATTGGCAATTATGGTAGGCTGTCTCAGCTACTATGTGTACGAAAGGAAAATGGGGCGTCCACAAGGTCATCATTTACACGAGCTCATAAAGAAGCGATGGGACGA consensus: ************************************************************************************************************************ 480~600: Scer.....: TCGCAAATAAtaatccggcgtgaggggagtatatataagtttctggcgatatgtaaataccataataattaatcctaggatctacctttatacgcatttatcctataaaaacccaatctt consensus: ************************************************************************************************************************ 600~693: Scer.....: tcagatccacagtatttttatatgtgtgatttccttgattgtctcaatttaaagagtaatacatacaacttagaccaaagaattattcaatag consensus: ********************************************************************************************* { alias......: ['REC107', 'MER2'] chromosome.: 10 description: ds break formation complex subunit end........: 469271 exons......: [(1, 316), (397, 1025)] gene.......: REC107 introns....: [(317, 396)] length.....: 1025 name.......: YJR021C plength....: 341 start......: 468247 tdist......: 276169 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 4 donors and 2 branches Smik: 2 donors and 1 branches Sbay: 2 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 534), ('Spar', 534), ('Smik', 534)] ->[('Spar', 218), ('Smik', 218)] ->[('Sbay', 1326)] ->[('Sbay', 1508)] ->[('Spar', 29)] ->[('Spar', 114)] ] [ ->[('Scer', 602), ('Spar', 602), ('Smik', 602), ('Sbay', 602)] ->[('Scer', 804), ('Spar', 804)] ->[('Sbay', 71)] ] 0~120: Scer.....: ----------------------------------------------------cttataagaac-cacgtaagattag---------tttttttttttccctttacgccatga----tagt Spar.....: ggtgcgcgacagcgtgttcttcttgtattgtgagtggcttgtttgcccatcttttataacaaa-cacgtaagattagcaatttttatttttttttttccctttacgccataacagtcagt Smik.....: ggaacacgatggcttactcttttcgtgttgtaaattgtttgttggctca-ctcttataacaga-cacgtaagatt-----------tttttttttttctctttcacgcatag----tagt Sbay.....: ......tgggcgcggtgtcttgtcttgtcttgtcttgtctttccctgcagcctgcgtatgggctcatctaaaactaacacgaaaggtcggtctttttttctttaag-cataataaataac consensus: ** ** *** * * * * ***** **** *** * Spar_spli: DDDDDD DDDDDD Sbay_spli: BBBBBBB 120~240: Scer.....: attttcaggacttaaaggg--aaaatcaacaagaacagaaagaaggaaaacaagcaaaacaaggatactgcagacgtgtagaaacatttagtaaaATGGTCGCTAGAGGTAGAACAGACG Spar.....: gttttcATGATTAAAAGGG--AAAATCAACAAGAACAGCAAG---------AGGCAATAGAAGGGTACTGCAGACGTGTAGAAACAGTTAGTAAAATGGTCAGTAGAGGTAGAACAGACG Smik.....: gtttctatgatttcaagggatagaatcaacaataacaacaag---------agccagaagaagtgtaccacagacgtgtagaaacaatcaatataATGGTCAGTCGAGGTAGAACAGATG Sbay.....: attct-ataattcaaaggga-aaaatcaacaag-acaacaaga--------aagcaaaagcaagg----acaga-------agacaggcggcaaaATGGACACTCGGACCAGAACAGACG consensus: ** * * * ***** * ********* *** *** * ** * * **** * *** * ***** * * * ******** * Spar_spli: DDDDDD Smik_spli: DDDDDD 240~360: Scer.....: AGATATCTACAGATGTTTCAGAGGCTAATTCTGAACACTCGTTGATGATTACAGAAACATCATCACCGTTCAGATCTATATTCTCCCACAGTGGGAAAGTAGCG---AATGCAGGCGCTT Spar.....: AAGTGTCTACAGATGTCTCAGAGACTAATTCTGAGCGCTCTTTGATGATTACGGAAACATCATCACCGTTCAGATCTATATTCTCTCGCACTGGGAAGGTAACG---AATACAGGTACCT Smik.....: AGGTATCCACAGATGTCTCGGAGACTAATTCCGATCGGTCGTTGATGATTACAGAAACATCATCACCGTTCAGATCTATATTCTCCCGTAGTGGGAAGATAACG---AATACTGGTGTTT Sbay.....: AGGCATCCACGGACATCTCGGAGACGAATTCCGAGCGGTCGCTGATGATCACGGAGACATCTTCACCGTTCAGATCCATATTCTCCCACAATGGGAAAGTGGCGACCACCACCGCTGTCC consensus: * ** ** ** * ** *** * ***** ** * ** ******* ** ** ***** ************** ******** * * ****** * ** * * * 360~480: Scer.....: TAGAGGAATCGGACAAGCAGATACTGGAATGGGCAGGTAAACTGGAATTGGAGAGTATGGAGCTGAGGGAAAACTCTGACAAGCTAATTAAAGTTTTAAATGAAAATTCTAAGACATTAT Spar.....: TAGAGGAATCAGACAAGCAAATATTGGAATGGGCAGGTAAATTGGAACTGGAGAGTATGGAACTGAGGGAAAACTCTGATAAGCTAATTAAAGTTTTAAATGAAAATTCCAAGACATTAT Smik.....: TGGAGGAATCTGACAAACAGATACTAGAATGGGCAGGCAAGCTCGAGTTGGAGAGTATGGAACTAAGGGAAAGCTCTGATAAACTGATTAAAGTCTTAAATGAGAATTCCAAGACATTAT Sbay.....: TGGAAGAGTCGGACAAGCAGATACTGGAATGGGCAGGTAAGCTGGAGCTGGAGAGCATGGAGCTAAGAGAAAACTCGGGCAAACTGATCAAGGTTCTGAACGACAACTCCAAGACGCTGT consensus: * ** ** ** ***** ** *** * *********** ** * ** ******* ***** ** ** **** *** * ** ** ** ** ** * ** ** ** ** ***** * * 480~600: Scer.....: GTAAATCGCTAAACAAGTTTAACCAGCTACTGGAACAAGATGCTGCTACGAACGGTTCGTACC-AACA------CAGTGCATACCCTCAAGTTTTTTATTCATTTTCTTC-CAAAACACA Spar.....: GTAAATCGCTAAACAAGTTTAACCAGTTGTTGGAACAAGATGCTGCTAGAAACGGTTCGTATC-AAGA------ATGTGCATACCCTCAAGTTATTTATTCATTTCCTTC-CGAGATGCA Smik.....: GTAAATCGCTAAGCAGATTTAACCAGCTATGGGAACAGGATGCTGCAAGGAACGGTTCGTATCGAACA----TTATATGCATACCCTTAAGTTATCTATATATCTACATT-AGATATTCA Sbay.....: GCAAATCGCTAAGCAAGTTCAACCAGCTACTAGAGCAAGATACCGCTACGAACGGTTTGTATCGGACAGACAGAATGTGCACACCTTTAGGTTACTTACTTATTTCCGTCGAGGAACACA consensus: * ********** ** ** ****** * ** ** *** * ** * ******* *** * * * **** *** * * *** ** ** * * * * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: >================================================================= 600~720: total....: ======= Scer.....: TTTACTAACAACTGTAGTAT-AGGAAACGTGAAAACCTTAATAAAGGATTTGGCTTCCCAGATTGAAAACCAACTGGACAAAGTGTCAACAGCAATGTTATCGAAAGGCGACG--AGA-- Spar.....: TCTACTAACAATTCTAGTTT-AGGAAACGTGAAAACCTTAATAAAGGACTTGACTTCCCAAATCGAAAGCCAGTTGGACAAAGTGTTGACATCGACGTTATCCAAAAG---CG--AGG-- Smik.....: GTTACTAACAACTGTGG--T-AGGAAACACGAAAACGCTAATAAAGGACCTGGCCTCCCGAATTGAAAGCCAACTGGACAAAGTGTCGGCAACAATGCTGTCAAAAAGCGATG--AGA-- Sbay.....: CATACTAACAACGCTAGTTTCAGGAAACGTGAAGAAACTGATAAACGATCTGGGCGCCCAGATGGAGGCCCAGCTGGGCAAACTATCAGCATCATCGCCACCGAAGAGCGACGCCAGACC consensus: ********* * * * ******* *** * * ***** ** ** *** ** ** *** *** **** * * ** * * * ** * * ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =====================>= 720~840: Scer.....: --AGAAGACAAAGTCGGATTCCAGCTACAGGCAGGTATTAGTCGAAGAAATAAGCAGGTATAATTCCAAGATAACGCGACACGTAACTAACAAGCAGCATGAGACGGAAAAGTCGATGAG Spar.....: --AGAAAACAAAGCCTGATTCCAGCTACAGACACGTATTAGTCGAAGAAATAAGCAGATATAATTCCAAGATAACGCGACATGTCACTAACAAGCAGCATGAGACAGAAAAGTCGATGAG Smik.....: --AGAGGACGAAGCCTGACTTCAACTTCCGGCAACCGTTGGTTGAAGAACTAAGCAGGTACAATTCCAAGATAACGCGACACGTCACTAATAAGCAGCATGAGACGGAAAAGTCGATGAG Sbay.....: GCACACGGCAAAGCCAGACCCCGGCTACAGACAAGCGCTGGTCGATGAGCTGAGCAGGTATAACTCCAAGATCACGCGGCACGTCACCAACAAGCAGCATGAGACGGAGAAGTCGATGAG consensus: * * * *** * ** * ** * * ** * ** ** ** * ***** ** ** ******** ***** ** ** ** ** ************** ** *********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 840~960: Scer.....: GTGCACCCAGGAGATGCTCTTCAACGTCGGCAGCCAACTGGAGGACGTGCATAAAGTGCTCCTGTCTCTATCCAAAGACATGCACAGTCTACAAACCCGCCAGACTGCTCTAGAGATGGC Spar.....: GTGCACTCAGGAGATGCTCTTCAACGTCGGCAGCCAACTGGAGGACGTACAGAATGTGCTCATGTCTCTATCCAAAGACATGCACGTGTTACAAACCCGCCAGAGTGCCCTGGAGATGGC Smik.....: GTGCACCCAGGAGATGCTTTTCAACGTCGGCAGCCAACTGGAGGACGTACAAAAGGTGCTTCTTTCTCTTTCTAAAGACATGCAAGTTTTACAAACCCGTCAGGCTTCCCTGGAGGTGGC Sbay.....: GTGCACGCAGGAGATGCTGTTCAACGTCGGCAGCCAGATGGAGGACGTGCAGAAGGTGCTGGTGTCGCTGTCCAAAGACATGCACGCCCTGCAGGCCCGCCAGGCTTCTCTGGAGACGGC consensus: ****** *********** ***************** ********** ** ** ***** * ** ** ** *********** * ** **** *** * * ** *** *** 960~1080: Scer.....: GTTTCGAGAAAAGGCAGATCACGCCTACGATCGCCCGGA------TGTGTCTCTGAATGGCACCACACTCCTGCACGATATGGACGAAGCCCACGATAAGCAGCGTAAGAAGTCCGTGCC Spar.....: ATTTCGAGAAAAGGCAGATCATGCCTACGATCGGCCGGA------TGCTTCTTTGAATGGCACCACTCTCCTGCACGATACAGACGACGCCCATAATAAGCAACGTAAGAAGTCCGTGCC Smik.....: ATTGCGAGAAAAGACAGATCACGTCTACGACCGCCGTGA------CACGTCTTTGAATGGCACCACACTCTTGCATGATACGGACGAAATCCACGATAAGCAGCACAAGAAGTCCGTGCC Sbay.....: CTTCCGAGAGCGGGCAGCCCACGTCTGCGACCCACAAGACGTCGCCGCCTCCTTGAATGGCACCACCCTCCTGCACGACTCCGACGACGACCAC---------CACAAGAGGTCTACGCC consensus: ** ***** * *** ** * ** *** * * ** ** ************* *** **** ** ***** *** * **** *** *** 1080~1200: Scer.....: GCCACCAAGAATGATGGTCACAAGGTCCATGAAACGCAGAAGATCCAGCTCCCCAACCCTATCCACCAGCCAAAACCACAATAGCGAAGA---CAATGATGACGCTAGCCATCGGCTGAA Spar.....: GCCGCCAAGAATGATGGTCACAAGGTCCATGAAACGGAGAAGGTCCAGCTCCCCAACCTTATCCACCAGCCAAAACCACAATAGCGACGA---TGATGATAATGCCAGCCATCGGCTGAA Smik.....: ACCACCTAGAATGATGGTCACAAGGTCCATGAAACGAGGAAGGTCCACCTCACCCACCATATCCACCAGTCAAGAGCACAACGGTGACGAGCTTGATGACGATGCTAGCCATCGCCTGAA Sbay.....: CCCACCAAGAACAATGGTCACGAGATCCATGAAACGCGACAGGTCCACTTCCCCCACCGTATCCACCAGCCAAGACGACAACGACGACGACac........................... consensus: ** ** **** ******** ** *********** ** **** ** ** *** ********** *** * **** ** ** **** * ** ******** ***** 1200~1320: Scer.....: GCGTGCGGCCAGGACCATTATTCCCTGGGAGGAACTAAGACCCGACACTCTGGAATCTGAGCTGTGAaacgggcgtcctgc---tttttcattcta-cacaggcatatgtaacagcagtg Spar.....: GCGTGCGGCCAGAACCATTATTCCCTGGGAGGAACTAAGACCCGACACTCTGGAATCTGAGCTGTAAaaccggcgtcctgc---tttttcgttcta-cataggcatatgtaacagcagag Smik.....: GCGTGCGGCCAGAACCATTATCCCCTGGGAGGAACTAAGACCCGACACTCTGGAATCCGAGCTGTGAgatcggtgtcttgc---tcctttcatcta-catacacatatgtaacagcagaa Sbay.....: ...........gacccatcattccctgggaggaactaaggcccgacacgctggagtccgaactgtgaagcc-acaccctgcctgctccccgacctatcgtagtcatgtat-ataccagca consensus: ************ **** ** ***************** ******** ***** ** ** **** * * *** *** * * *** * * * * *** 1320~1440: Scer.....: tataggctatgtaaatcggcccaatcaaca--aacaagcgttgcttattggacttgctactaccccaacaaaggagagagcctttgattgcat-cc-tcggaagagacggcataaacacc Spar.....: tataggctatgtaaatcggtccaatcaaca--aacaagcgttgctcatcggacctgtaactaccccaacagaggaaagagcc-ttgatagcatccc-ccggaagagacggcataaacacc Smik.....: tatgctctacgtaaatcggcccaatcaaca--aacaagcgttgctcatcggatttcaaactaccccaacagagaagatagtc-ttgatagtatcccaccggaagagacggaataaacacc Sbay.....: cataacgtacgt-actcgacccaaccaccaacaacaggccttgctcattccacctcgaactaccccaacacagagcg------ttatt--cttccctccggaagagacggcctaag-acc consensus: ** ** ** * *** **** ** ** **** ** ***** ** * * ************ ** ** * * ** ************ *** *** Sbay_spli: DDDDDD 1440~1560: Scer.....: gagcctc-atcctacaatga--aaaaccacgccagttggatataaaccag-----aaaagggtttcaattcagt------atccaccatgagcaagacaagataagacaagattgcataa Spar.....: gagcctc-attctgcaatga--aaaaccacgccagctggatataaaccag-----aaaagggttttaacccagt------gttcatcatgggtaagacaagacaaggcaagattgcgcaa Smik.....: gaactta-tttctgtaataa--aaaaccacgccagctagatataaagcag-----aaaagggttccag-tcgat------gttcaccacgaccaagacaagacaagactagactagataa Sbay.....: gagctttgagcctaacacaacgaaaaccgctccagctggatataaagctgctgccattcgggcactgagtgagtgggtgggctcaccac-agcagagcaagacagaacacacacacacag consensus: ** * * ** * * ****** * **** * ******** * * * *** * ** ** * ***** * * * Sbay_spli: DDDDDD 1560~1579: Scer.....: aa----------------- Spar.....: cg----------------- Smik.....: ag----------------- Sbay.....: ggcaggacaaagaccaaca { alias......: ['RPL43B'] chromosome.: 10 description: Ribosomal protein L43B end........: 608553 exons......: [(1, 2), (278, 554)] gene.......: RPL43B introns....: [(3, 277)] length.....: 554 name.......: YJR094W-A plength....: 184 start......: 608000 tdist......: 136887 type.......: ORF up.........: 1 } Scer: 6 donors and 3 branches Spar: 0 donors and 0 branches Smik: 7 donors and 3 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1000), ('Smik', 1000)] ->[('Scer', 2720), ('Smik', 2720)] ->[('Scer', 904)] ->[('Scer', 1590)] ->[('Scer', 2004)] ->[('Scer', 3692)] ->[('Smik', 458)] ->[('Smik', 2429)] ->[('Smik', 3052)] ->[('Smik', 3707)] ->[('Smik', 4205)] ] [ ->[('Scer', 2969), ('Smik', 2970)] ->[('Scer', 576)] ->[('Scer', 3659)] ->[('Smik', 98)] ->[('Smik', 3926)] ] 0~120: Scer.....: tttgtttgtggggagaggaatagaaaagcttttcttttattatttttttcctttttcaccagtaatgggtgccagtaggaatttgtttctctgtaggtgactaatgacag-tagtatatt Smik.....: ----tatgtttggatatgaataaaagtgtatctttttacttgacctttttccttttaataaataa--actaggaaaaagaatta--tcctgtgaaaacaactaacgataaatgttttaac consensus: * *** *** * ***** ** * * * *** ** **** * **** * * *** * * * ***** * ** ** * ***** ** * * * ** Smik_spli: BBBBBBB 120~240: Scer.....: atgcttttaatctttaacaatactactggtcgatttataatatgataatgtaaaataaatcgtaataggatagtcgatgtttgtatctacttcacgaaacagttatggtatacggtagtt Smik.....: ttaattttagattgtaaaaataccactgatttatttgtaatattggaatattaaataaatcgtattgatatatctgat-tgtatttctatttcacgaaattgctatgttggacgaaagtt consensus: * ***** * *** ***** **** * **** ****** *** * ************ * *** *** * * * **** ********* * **** * *** **** 240~360: Scer.....: taaatatctgaagaagcaaaaataccgaactacaagggaagcattttgagaaaaatattaagatcaaaagataattaatttaccttaaatacataaaagaggaaaagtaatatacaaggt Smik.....: caaacacaggaaaaagggataatacagaactataagagaaagattcttaagaaaataaaatgaataaaagattaccgactggctttaaatacataagagag---aatttatatctatggc consensus: *** * *** *** * ***** ****** *** *** *** * * ****** * ** ******* * * * * ************ **** ** * **** * ** 360~480: Scer.....: aaacaacaggcaaggaacaagatcaaaaacgtccgaccccaatttagtagtaaattacagtaagagaaaaaggtattggggctgatacatattaatt-gtgcgttgttgttgttgtttaa Smik.....: aaa---caggcaagatataagattgaaaataactgaccccaatttagtagtgaattacaacgatcaaaaatggtattggggatacggtatattaatttgtacgttgttgttgtttgttta consensus: *** ******** * ***** **** * ***************** ******* * **** ********** * ********* ** ************* ** * Smik_spli: DDDDDD 480~600: Scer.....: ttttagattggctattatgagtacacacaaaacgttgtaaacgcaatcacccatggataagcgctccctttaaaatgcactacgaaatcattgatctactaactttaaaccggacttaaa Smik.....: atttaaactcactactatgagtacacgcacaaggttatagacgcaaac-tccatgg-taaaacctccctttaaaatgcactacgaaatcattgatctcctaactttaaattggcaatata consensus: **** * * *** *********** ** ** *** ** ****** * ****** *** ********************************** *********** ** ** * Scer_spli: BBBBBBB 600~720: Scer.....: ccatcaaagggtgctctagatctcatcgatgtattctgatgcagccaaaattgcgcaatcaatcacgtttcccgatatagaaaactaattggctgtgttacgtggctgggggttctgtaa Smik.....: tcatcaatacgtgtgctaaatcttatcgatgtattattctgcggtcaaatatgcgcaatcaatcacatttcctgatctagaaaagtaattggctgtgttatatgg-tgggggtcgtgcga consensus: ****** *** *** **** *********** * *** * **** *************** ***** *** ******* *************** *** ******* ** * 720~840: Scer.....: ttcctttcttccccggtgaatcatcaagattgggctaagcgcctttgatcctttccctcgaagacggaaatggggccgcaggataaaaaatggtgtgtctgtaattccgattttttgctt Smik.....: ttcctttcttccacagtgaatcattattcatgggctaaccgccattgatccttcccctcgaagacagaag-ggggccgtagga-aaaaaatggagtgtctttaattccggttttttgctt consensus: ************ * ********* * ******** **** ********* *********** *** ******* **** ********* ****** ******** ********** 840~960: Scer.....: atgtaatcatgtaactttcttctagtccctttgcagacatgcatgacacttccttacccgaatagtgagttagatctgtgtta-ggatgcaggatgggcagttcaaaggcttttcttatc Smik.....: atgtaatccggtg-ttttttgcctgtctttttgcagacatgcatgacagtttgttatcttaacgttacgttggatctgtgttatgggtccaatatgggctgtttatat-catcctttggt consensus: ******** ** *** * * *** ******************* ** *** * ** * *** *********** ** * ** ****** *** * * * * ** Scer_spli: DDDDDD 960~1080: Scer.....: gtatctttaccttttcctgtaactaagaaggtttttgagtgcatgtaaaggcacataaatgaaactttaattccctgcgtatttaagaccc----aagaagccaccatgacgc----ttc Smik.....: actccgttacctttttctagtaatcaacaggtttttgcgtgcatgtgaaggcacatatgataaaccttaattgcctgcgtgcggaagacgccccaaagaagccaccataccgcagcatta consensus: * ********* ** * * * ********* ******** ********** **** ****** ******* ***** * ************* *** ** Scer_spli: DDDDDD Smik_spli: DDDDDD 1080~1200: Scer.....: cttgatgttgtatctacccccaatcctggcgccccctcctgcgggcacgc----atgcgcctttgatccttcccc----tcgaagacgaaaagtaaacaaagatacgcactttttttctc Smik.....: tttgttgtgtattccacccccaagtatggcgccccctgctgcgggcgcgtgatgatgcatatgcgagttttcttcaactccgaggacgaaaagtaaacaagcatacacacattttttctc consensus: *** *** ** ******** *********** ******** ** **** * ** *** * *** **************** **** *** ********* 1200~1320: Scer.....: caacgcagtattgaaggtaccatcacatgcttac---tcactttgcggctgctataacaccgtggcagtgtaacgttt-taccgtttgtcct-ttgctaccgcattttaaagtggtacaa Smik.....: caatgcagcacgagaagcggtgtcacatgcctacctttctacttactgcgactataatgccgtagaaacataaagtttataactcttgtcttgttattgcttaattttacagctgtttac consensus: *** **** * * * ******** *** ** ** * ** ****** **** * * *** **** ** * ***** * ** * * ****** ** ** * 1320~1440: Scer.....: gatgttgagagaaaagatttcctgcagccatgattaggagaggtaatagcggatga-catcaacgaataagctttatccagcggcttgtatagttctgtgtacacaattactgccgggct Smik.....: gagattgagagaggag-cagcctgcggctattcttagaagagataatattggatgaatatcaatgc-taaactttatctatcgacttgtacagt--tgcatgcacatctactgccacgca consensus: ** ******** ** ***** ** ** **** **** ***** ****** ***** * *** ******* * ** ****** *** ** * **** ******* ** 1440~1560: Scer.....: ctctgagcatttgcgtttctcgggctagcttcattactt--agtaacttcaaattaatgaaatattt-aattatcatgat--tccaaacaaa--actactttaatttcaatcacattt-t Smik.....: ctctatgcatttctgtttcttgctttgggtccattttttttataaaaaccaaactaataggatattttagtcatgataaccctccaatccaataattacgtcaactctaacgaaatttct consensus: **** ****** ****** * * * * **** ** * ** **** **** ****** * * ** ** * ***** * ** * *** * ** * ** * **** * 1560~1680: Scer.....: tgttatctgcctgaaacgatagctgtacgggtacgttcttgataaataaaactcagtgtttaaaactctctttttacatctgttcgccgatgattgcttgctcggaggtactagtcatcg Smik.....: tgttatctgcgtgacatgggagcaataagggtaca--------aaaaaaaacatggcgt-------tctcttttggtatttgctggctgaggatcccttgcgcggaggaactgttatcaa consensus: ********** *** * * *** ** ****** *** ***** * ** ******** ** ** * ** ** *** ***** ****** *** * Scer_spli: DDDDDD 1680~1800: Scer.....: gaattgaggaaattccttttctcctttgttttctctttatccccgcgtaaatacgcggaatgccaataatcaagtacacattctttctccaagttggccaaaaaatagttcaaattcttt Smik.....: aaatagagaaaaatactttt-----ttggttcctcgttgccattgtg-gtgtacccagagcgcccatattcaatcagacattctt-ctataagttggctaataagtaactgtaatttttt consensus: *** *** *** * ***** *** ** *** ** * * * *** * ** *** *** **** * ******** ** ******** ** ** ** * **** *** 1800~1920: Scer.....: aaactaagcgctattaattattattaattatataagtttgaaaatatcaatgcaggaccctatttcttcacgagggtgtatccagaaacggtttcttatatagtgttggcgctcactttt Smik.....: gaagtaggagttgtgggacgttgttgatggtaaagcttttacgaagagaat--aggcctatttctttttacaagcaaattttgagaaatggttacttatatagcgtttatgttcactttt consensus: ** ** * * * * ** ** ** ** * *** * * *** *** * * * * ** ** ** * * ***** **** ********* *** * ******** 1920~2040: Scer.....: ttcctacccacgtct-atatatgcaacgcctacttgttttaatcaacatcacaattttatgcttttgaggtacagcagttagccgtacgttttcggcagtcgctaaaaatgtaagcgcgg Smik.....: t-cctacccacgtttcgtatatggagttactacgtatttcgattaatattgttgttttatgcttttgaggtacaggaattagccgtacgatttcgcgagactctgaaaacgcgagcgcgg consensus: * *********** * ****** * **** * *** ** ** ** ********************* * *********** ***** ** * ** **** * ******* Scer_spli: DDDDDD 2040~2160: Scer.....: catttactgccatttagtggacttcttgaggttcttttgacatccgcattctt--gcagcaaatacacccccacccttcttttattgagaatatctactgaacctccgtgagggaataca Smik.....: gatttaatatcattaagtggacttcttgaggttctttagatatccgcattcttttgctgcaaacgtgaatac-cccctattttattga--ctatctattgagcaaccgcgaaagaacgcg consensus: ***** * **** ********************** ** ************ ** ***** * *** * ********* ****** *** * *** ** *** * 2160~2280: Scer.....: ttaatcaaattactccaacaccatacgggccgtggcgga----aagaacagcat-----gatatagataatatatgatatgaattgatttttttttctttttttcttgcggctggtatgg Smik.....: aaatcaatgttactccaac-ctatacgggccgtggcaaataagaagaaggggaacaagagatatagatagaatatattatacgtag--ttttgtttctttttttct--cggctaataaga consensus: * * ********** * ************** * ***** * * ********** **** *** * * **** ************* ***** ** * 2280~2400: Scer.....: tattgtaaggatgata--gtgcattctatga--------gtgatttttgtgacggtgacgtacgatctctatacctttttagccgcccatcttctgcctttcatttttatgccaaccctc Smik.....: cactttactctcgatataggacgtttcatagatcgcgaggttatcctctttttgtaatcgtttgctgtttttttctcattagccgcccaagtcctgt-tttcattcttgttcca-----c consensus: * * ** **** * * ** ** ** ** * * * *** * * * * * ** *********** * *** ******* ** * *** * 2400~2520: Scer.....: catccatacatcctttttaacccatacatatcatttagattattgttttttaattttttttttatcagatgttgttcatcgcgaaatttataatctttcgattgaatcgcac-ttgtcgt Smik.....: catccatacatc-tttttaacccatacatgtcagtt----catggc-----gctttttttcttagctgacgcagttgactgtccggttcaaaatatcttacttgaatttcacactatcgt consensus: ************ **************** *** ** ** * ******* *** * ** * *** * * ** * *** * * ****** *** * **** Smik_spli: DDDDDD 2520~2640: Scer.....: gcataatgataaataccttc-cggagagaaaactcagacccactggga----agttcctacctgccgagtaagaccagcttgaaaaatttgaaatttcaactgagaatcagaatatatta Smik.....: gtattatgataaacttgctcaccgaagaaaaatttaggcatagggagaggagagttcccacctgcgtcggaccattaggttgaaaaatctgaaatttcaattaaaaattcatctataata consensus: * ** ******** ** * ** **** * ** * * * ** ****** ****** * * * ** ********* *********** * * *** **** ** 2640~2760: Scer.....: ctgcccttcgtgttgtagggttattcattaactatat----acgatattataaacagcatagataatcaaacaaaaaaATGTATGCATATAA--TAGAGGAATTGGATGACTAAATGTTC Smik.....: ctgccataccctttgtgggattttttacttcctgtgctaaaaagagcctaaggataggatagataatcaagaagaaaaatgtatgcaaagaacatagaggaattggatgattaaatgtta consensus: ***** * * **** ** ** ** * * ** * * ** ** * ** ************ * ************* * ** **************** ******** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >======================================= 2760~2880: Scer.....: TTATATTGGAGTTAGTGGAGATGCGTGGTAGATTTGAATTAAATAGAAAGTGCTGGGGTTGATAAACCACGAAATATCGCAGTTGAGGAGAATGATAAGC-CAGGAT--AGATGGTAGC- Smik.....: ttatattgaagttagcaagaatgtgtgatagatttaagtccgaatttaactgctggagttaccaaatcatgaaatgtcgcagtggagggaaatgaaacacacaatgtctaattagtatct consensus: ******** ****** *** *** ******* * * * ** ****** *** *** ** ***** ******* **** ***** * * ** * * * *** * known....: ======================================================================================================================== 2880~3000: Scer.....: -------GCATTTTTGGGGCAATCTCACTGTAGGTCCACCACAACTCAATATGACTACATCGAATCAGTTATAAGGCAAGTTTTTAGTTT-ACTAACAAATATTTCCATCTTATTTTTTT Smik.....: ttgggtggcgttaatgtgttaacttcgccacctgctctccaaaattcaatATGACTACATCAAATCAATCGTTGAGCAAGTTTTTAGTTTTACTAACAGAAA-----ATAACATTTTTTT consensus: ** ** ** * ** ** * * * *** ** **************** ***** * * *************** ******* * * ** ******** Scer_spli: BBBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 3000~3120: Scer.....: TTTTTGCAGGGCTAAGAGAACAAAGAAGGTCGGTATCACAGGTAAATACGGTGTCCGTTATGGTTCATCATTGAGAAGACAAGTTAAGAAGCTTGAAATTCAACAACATGCCAGATATGA Smik.....: TTTTTACAGGGCTAAGAGAACAAAGAAAGTCGGTATCACAGGTAAATATGGTGTTCGTTATGGTTCATCATTAAGAAGACAAGTTAAGAAGTTGGAAATCCAACAACATGCCAGATATGA consensus: ***** ********************* ******************** ***** ***************** ****************** * ***** ******************** Smik_spli: DDDDDD known....: =======>= 3120~3240: Scer.....: CTGTTCCTTCTGTGGTAAGAAGACTGTTAAGAGAGGTGCAGCTGGTATTTGGACTTGTTCCTGTTGTAAGAAGACCGTTGCCGGTGGTGCTTATACTGTTTCTACTGCAGCTGCCGCTAC Smik.....: CTGTTCATTCTGCGGTAAGAAGACCGTCAAGAGAGGTGCTGCTGGTATCTGGTCTTGTTCTTCTTGTAAGAAGACTGTGGCCGGTGGTGCTTATACTGTTTCTACTGCAGCTGCCGCTAC consensus: ****** ***** *********** ** *********** ******** *** ******* * ************ ** ***************************************** 3240~3360: Scer.....: TGTTAGATCTACCATCAGAAGATTAAGAGAAATGGTTGAAGCTTAAacttctttcattcattttctcttggctttcactaggtatatctattccataacgactatgttttgtatttgtta Smik.....: TGTTAGATCTACCATCAGAAGATTAAGAGAAATGGTGGAAGCCTAAg-tgtttctatatattcttttttggccttacactggtatatctattccataacgactatgttttatattttcaa consensus: ************************************ ***** *** * ** ** *** * * ***** ** ****************************** ***** * 3360~3480: Scer.....: atttacataaaaccatatcagtacatcaacgaactgtaaaaaagaaactttagcataattattgcggatattt--aaactcacttgcaggtaagagcaaaaggcgattgatttccagtcc Smik.....: atttacataaaaccatatcggtacatcaacgaactgtaaaaa---aactttagcataatttctgcaataaactcaaaactcaatttaaaccca---tataaaatagtttatttgccaatt consensus: ******************* ********************** *************** *** * * ******* ** * * * ** ** **** * 3480~3600: Scer.....: gcctcttgtcacgtgatttagtaagaaattttgacagcaccctcggtttaatggaaaaga-ggggcgtttttcgatgaacccgaggggagactagagaatcatctcggttgaatggagca Smik.....: tcctct-atcacgtgattcagtttgaaattgtg-tagaatcctcggctcaatggaaaagaaggggtacccttcgatggacc--gggggagactcaggactcacctcggttgaatggag-a consensus: ***** ********** *** ****** ** ** * ****** * *********** **** ******* *** ********* ** *** *************** * 3600~3720: Scer.....: ttatttttttagtagcgcccgcccggagaaatggacgttggcgaatgagcc--atgaattattaaccgcccatgtctaccagataccacatcgtatgacagtaccagcctagtcccggta Smik.....: ttttttcctcagtagcacccgcccggagaaatggatgctattgaaatggttcaaggaatgaataaccgcccacctctaacagatac---atcgtacaacagtactaggtcagtcccggta consensus: ** *** * ****** ****************** * * *** * * **** * ********** **** ******* ****** ******* ** ********** Scer_spli: BBBBBBB DDDDDD Smik_spli: DDDDDD 3720~3840: Scer.....: aaccgcaaacggaccttaattgtgacg--aagggcccaaatttgatgggtcggtgttaatgattagtcctcattgtcataataaagtgtgatgatggaggcaatgatgatatacggtagt Smik.....: aaccgcaaacggactttatttgtgacgggaagggctcaaaattgatgggtcggtgttaactattaatccttgtagtcatagggaagtgtgatgatggaggtaatgatgatatac---agt consensus: ************** *** ******** ****** **** ****************** **** **** * ****** ***************** ************* *** 3840~3960: Scer.....: actactgctcgaggtgctatcttttaaccaatcctttgagattcttgtcgccacggagttactaccttttacaaaccgtaatgtc------acattttgcatatat-----cttatgtat Smik.....: atggctgctcgaggtaccatctactagccaatcctttgagattcttgtcgccacggagttaccat-ttttacaaactacaatattttactaacattctgtacacgtacatacatatgtat consensus: * *********** * **** ** *********************************** * ********** *** * ***** ** * * * * ******* Smik_spli: BBBBBBB 3960~4080: Scer.....: aaatatatagttcacttactacttgttctcg-ttttgttaactttc-ttgttgtagttcttcttgttcttggcgtttccccctttgttttctatctgcttcataagtaaagtgcaaagca Smik.....: aaatatataatttagttgtaggttcaacttgattttgttaattcttgttgttgtagttcttcttattcttggaattttgcacttc-ctttctgtttgtctcatacaaaaagcgctaatca consensus: ********* ** * ** ** ** * ********* * * ***************** ******* *** * *** ***** * ** ***** **** ** ** ** 4080~4200: Scer.....: tttt-ggaagatattat--------caattgagtcattgaaagaaacttggcatcttccctattactaaaactaagaatacttgattcaagaaagaagtttatattagttttagccgtaa Smik.....: tttttgaaagatattataaatttatcaattgagttattaaaagaggtttgaaatcttccc--atacttcagccaagaatatttgacttgagaaagtgtgttgaattataataaagcaaaa consensus: **** * ********** ********* *** ***** *** ******** **** * * ******* **** * ****** ** **** * * * ** 4200~4266: Scer.....: gataa------------cataacaaagaagaagaaagaaaa------------------------- Smik.....: gagaagtgagttatctttttgacttataaggtaaaaaaaatattaaacaaaaaagaagaaatcaag consensus: ** ** * ** * *** *** *** Smik_spli: DDDDDD { alias......: ['RPS4A'] chromosome.: 10 description: Ribosomal protein S4A (YS6) (rp5) (S7A) end........: 702761 exons......: [(1, 14), (271, 1042)] gene.......: RPS4A introns....: [(15, 270)] length.....: 1042 name.......: YJR145C plength....: 347 start......: 701720 tdist......: 42679 type.......: ORF up.........: 0 } Scer: 6 donors and 1 branches Spar: 5 donors and 2 branches Smik: 5 donors and 1 branches Sbay: 7 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1326), ('Spar', 1326), ('Smik', 1326), ('Sbay', 1326)] ->[('Scer', 1828), ('Spar', 1828), ('Smik', 1828), ('Sbay', 1828)] ->[('Scer', 2202), ('Spar', 2202), ('Smik', 2202)] ->[('Smik', 1638), ('Sbay', 1642)] ->[('Spar', 2634), ('Spar', 2638)] ->[('Sbay', 109)] ->[('Sbay', 649)] ->[('Sbay', 1550)] ->[('Sbay', 1597)] ->[('Scer', 1100)] ->[('Scer', 2697)] ->[('Scer', 2741)] ->[('Smik', 1387)] ] [ ->[('Scer', 1565), ('Spar', 1565), ('Smik', 1565), ('Sbay', 1565)] ->[('Spar', 1001)] ] 0~120: Scer.....: ------------------------------------gtctgacgtgcgtcgctacac-gaaagagacacac-ttggcgactgccctgactggcaatatatacagtccgcaaatg-tcgcg Spar.....: ------------------------------------gtctgacgtgcgtcgctacac-gaaagagacacac-ttggggaccgccctgaatggtaatatatacagtgtgtaaata-tcacg Smik.....: ---------------------------------------------gcgttgctacac-cagagagaaactc-ttggtcaccggattgactggcaatatatacagcccgcggcat-ccgtg Sbay.....: cgtcgaggttgcgtccgtggctctatgcgtagccacgcgcctcagacacagacacacacaaacaaacacacactggcctccaacttacctgccaatatatacaaaccgcgcatgttcgcg consensus: * * **** * * * * ** * *** * * ** ********** * * * Sbay_spli: DDDDDD 120~240: Scer.....: gactgatg-cgtccacttactcttcctatata--ccacctgggtgaagaggagaagtgagcccgttctggagatatatgtccaaatatttgcagatccag---------ttttgtcatta Spar.....: cactgatg-cgtccacttactcgtcctatatattccatctgggtaaagagaagaagtgagcccgctctggagatatatgtccaaatgtttgtagatccagttttgtcatttttgtcatta Smik.....: gaattatgacggccacttagtcatcctttata--ccacctggtcgaagaggagaggagaacccgttctggagatatatgtccaaatatttgcagatccagtcttgtcatttttatgatta Sbay.....: gaccgtcagcgctgacctgcctgtcctatata--cttcccacgcgaagaggagaacagaacccgttctagagatatatgtcccaagatttgcagatccag---------ctttgacattg consensus: * ** ** * **** **** * * ***** *** ** **** *** ************* ** **** ******** *** *** 240~360: Scer.....: ta--atgagatgcc-ttttgggcgacaaagttcgggtaaaag---------------------aaggacgggtccaggaaggccgtggccacagaacaatgcgcaga-gaagatttccgg Spar.....: ta--atgagatgcc-ttttaggcgacaaagtttgggtagaag----------------------aggacgggtccgggaaggccgtagccatagaa-aatgcgcaga-ggccatttccgg Smik.....: ta--aagagatgcc-ttttaagcgacaaacctcgggtccgag----------------------cagatgggtcggggaaggccgtggccaaagaaacacgcgcaggcctcgatttccgg Sbay.....: tgttgtgtgacgcctttttcagcgacaaagtttgggctggagaagtcgaacaaacaccaaagcatgcgcggctccggacgggccgtagct-tacaaatgcctgcaccacccgttttccgg consensus: * * ** *** **** ******** * *** ** ** ** * ****** ** * ** *** ******* 360~480: Scer.....: tttctttttggctttt--ccgactttc-------------atcttttagaactaaagatt-----tcctgcatcgg----taaaccttagcaatgtttc--tctagagggtttttgcaca Spar.....: tttctttttgactttt--gcaactttc-------------atcttttagaact-aagatt-----tcctgcatcgg----taaacccaggcaagttttc--tctggagag-ttttgcacg Smik.....: tttctttttgactttt---caactttt-------------atcttctggaactctagctt-----tcctgcatcgg----caagcttactctatgtttc--ttaagaggcttttcgcagg Sbay.....: ttttttttacgcttttttcccaccctcttctctgttgcgaagctttttgggccactgttcttctgttctgcatcgggcgacagacaggtcccaatcctcgagcaagagactcgctgcagg consensus: *** **** ***** * ** * * *** * * * * * * ********* * * * * ** *** *** 480~600: Scer.....: cca-----gacacgtcgcacg---tgctctt----------------gcagagactgctgcgctttcgtttacactcagataacatagtctagctagcttgctgtcgttcggcacgagat Spar.....: cca------acaccttgcacg---tgctctt--------------aaacaaagactgctgcgctttcgtttacactcagataacatattcttgctagcgtgctgtcgttcggcacga-at Smik.....: cc--------tacgtggcacg---tgctct----------------agtagaaactgctgcgcattcgtttac----------------------agcgtgctatcgtctggcacgaagt Sbay.....: ccgcgttctgcacttgttgcgggctgcctttcccggcgggtcacccggcagccactgcagtgcggtcgtttaca-gcacgcctttcacgtgttattctttgtcagcgggcggc-cgccgc consensus: ** ** * ** *** * * ***** * ** ******** ** ** *** ** 600~720: Scer.....: ctaatccttctcctggcctaccgtctgtgcaaccattagtcatgattacgtgtgttgcgccttat-------------cttgtcattatggcagcatacttttcgtagtcct-----ttc Spar.....: ctagtccatctactgacctaccgtctgtgcaaccattagtcatgattacgtgtgttgcgccttat-------------cttgtcaatatggcagcatacctttcatactttt-----ttc Smik.....: ccattttgtctgatgtcccacaattcgtgcaaccattagtcatggttacgtgtattgcgcattat-------------cttgcggttacggcagcatgctacgcata------------- Sbay.....: cctgcggccctgcgggcctgctgtcgacacatccattagtcatgatgacgtgagttatacctcgtggtctggtcttggtctgccttggcggtagtaagctatccgtggttttttttattt consensus: * ** * ** * * ** ************ * ***** ** * * * ** ** ** * * * * Sbay_spli: DDDDDD 720~840: Scer.....: ctgcgcagcttgtccattttcgtcattacgtaaaaagtcctaatggag-agctgggtactgcattttttcgatgttttcaa-tattcagttcagcaggaaataaacaaataaacaaacat Spar.....: cttctcagcttgtccattttcgtcattatgtaaaaagtcctagttgag-agctgggtaccgcattttttcgatgttttaaatttttcagttcagcagaaaataaacaagtaaacaaataa Smik.....: ---cgctgcttctccatttccgtcattatgt-gagattcttagaaaagctgctgggcattgcgtttcttcagtgttttcatttttccagtgcaacagaa-------gaagaaaaaaacga Sbay.....: tttcacagtgctgcttgtcttgtccgccttgaaaaagtcctggttg------cgggtcttttttttttttttcgttatctcttgttccgttcagcagaaaataaacaacgctgttttttc consensus: * * * * * *** * * ** * *** *** ** *** * * * * ** ** *** * * 840~960: Scer.....: taaaatatcctgg---tttt---ttttcccagagacgcgtggaagcacccatgcatccactatttatttttaa-acagccgtacattctgtaattttgcttcctttttc---ttcctgcg Spar.....: acaaacagtagagaaattttgtatttttcaaaagacgcgttaaaccacccatacatccacagtttgtgtat-a-gcatccatacatttttaagttct--ttgctttttt---tt--tgcg Smik.....: agcagcatc----------------------------------agcacccatacaccgactattccgggacagtacatccgtacattttgttatatgatttttctttttctatttttgcg Sbay.....: gcgggtttcgaaga-------------cgggggcgcgagggggtccacccatacctccgctgtctgtgtg--gtgcatccgtacattctg---cgtagttttttttttt--gcttttgct consensus: ******* * * * * ** ** ****** * ** **** * *** 960~1080: Scer.....: ttc--tttttttcttgaactgtcgttttccgttatttttttcggtgacatcag-ttgaaagtagcagcggcctaggccgggaggccgtgt---agctctttgtagtcgtggtaagg---g Spar.....: ttc--tttttttccgtgaacgttatttactgttgattttttcactaacatcagcccgaaagcagcagtgacctaggccgggatatcgcgt---agttcttggtagtcgtggtggggggag Smik.....: ttcatttctcttcggttgttttcttttttttttttttctgttggtggaaccag-ccggcaggaggggtgggctacgcctggccgttgtctgaggaatctctgtgatggtgg-gaggttta Sbay.....: t----ttctttttttttttggtttttcgccgttgccgtacctcggaggaggagggggagaggtggaaaga---aggtccg............aaaactcgtacagcaagaaaaggattgg consensus: * ** * ** * ** ** * ** * ** * * * * * ** * * * Spar_spli: BBBBBBB 1080~1200: Scer.....: ggagt-agcaattcac-ttagtacg---tggtcttggagttaggctggctcggactggccctggcaagtcctgttctgtgtg-gtagtattgaaatttcagagattgtcg---------- Spar.....: ggagc-agcagtttgc-ttagtttg----ggtcgctgagttgggccggctctggctggctcggccaagtcctgttctgtgca-acagtattgaaatttcagagattgtcg---------- Smik.....: gccgt-tgttgctggc-tgatggcgatttggttaggctattatgtctgttccagctagttccggtaaggcttgctctttgta-ggagaattgaaatttcagagtgcgtcg---------- Sbay.....: aggataaaaagcacgcaacaaagggccagggttacccaacggaaacaaggccttaaaacccagccccgctcc-ccgtgtgtaggcggtgttgaaatttcaaaggatgtctcgccaggatt consensus: * * * *** * * * * * ** * *********** ** *** Scer_spli: DDDDDDDDD 1200~1320: Scer.....: ---gcaatactagtatattaaaaattatactataatttaatctagtgtt-gaaatactttcttatatagcgatttttctgcccaaaacaaaccaaagaatcaatacgcaaagATGGCTAG Spar.....: ---tcaatactagtatattaaaaattatactataatttaatttagcgtt-gaaacactttcttgtatagcgatttttttgcccaaaacaaaccaaagaatcaatacgcaaagatggctag Smik.....: cgctacacaccggtatatt-aaaattatactatatttcaatctagtgtt-agaacagtttcttgcatagtgaattttctgcccaaaataaaccaaagaatcgatacgcaaagatggctag Sbay.....: cgtgctacagtagtatattaaaaattatactataattcaatctatcgttaaaaacactttcttgcacactgacttttcttccccaaacaaaccaaagaatctatacgcaaagatggctag consensus: * * ******* ************** ** *** ** *** ** * ****** * * ** **** * *** *** ************* ****************** 1320~1440: total....: ====== Scer.....: AGGACCGTATGTTTGACTATAGA-C-TTTGATTATAATTA-----CGCAAGGATG---AGAAGAATGATAGACAAGAAACAAGTGGAG----------TCTTAACCAAACGAAT------ Spar.....: aggaccgtatgtttgactatagagt-tttcactacaatta-----tacagggatg---ggaagaatgatagacaagaaacaaacagag----------tcttaaccaaacgaaa------ Smik.....: aggaccgtatgtttgactatagact-tttaattacaatta-----cgcaaggatg---agaaggatggtatgcaaggagcaaacagag----------tcttgacaaaacgaaa------ Sbay.....: aggaccgtatgtttgactatcaactattttactacgaccaccacccgccaggatgtaagaaagcacacgaagcatggaccaaggaaagggaaataacaaaataacaaaataaaataacat consensus: ******************** * *** * ** * * * ***** *** * * ** * * *** ** * ** *** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD known....: >================================================================================================================= 1440~1560: Scer.....: --------------AGGAACAAC-AATGA-----------------------------ACCAGTTTATGTCCATTTAATTTTAGATCATCCTGGGATTGTA-CAAATATTTTACGAGTAA Spar.....: --------------agaaataacaaatga-----------------------------atcagtttatatccatataattttagatcatcccgggattgtaccagatgtcctATGAACAA Smik.....: -----gagagagagagaagtagctaagga-----------------------------atcagtgtacctctatttcattttgtatcatcccgggattgtatcagatgtcctatgatcaa Sbay.....: aatgaactactacgcggactgataagagaggcttcccctccccacccactgcaacgatactgtctttttttctcttcctatcggaacatccccgggttgtactgattattgtATGAGCAA consensus: * * * ** * * * * * * * ***** ** ***** * * ** ** ** Sbay_spli: DDDDDD known....: ======================================================================================================================== 1560~1680: total....: ======= Scer.....: TGATTTACTAACGAGCACAATGAAAA--------AA-ATAAAATGTCTGTATCTTCAT-------------------TATACATTCATTTTTGCCCTTTTTTCTCA---TTTTTTTCCGT Spar.....: CGATTTACTAACGAGTACAATGAAAAAAAAAAACAA-ACAAAATGTCTGTATTTTCAC----------------C-ATGTACATTCATTTTGCCCTTTTTCTCTCA----ATTTTTCCAC Smik.....: tgatttactaacaagcacaacgaaaaaaccacaaaatgtaatgtatctgcattttatt----------------taatgtacgttcattttgtcctttttat-tca----ttttttccac Sbay.....: TGATTTACTAACAAGCACTATGAAAAAATCGCAAAATGT-ACGTATCTGTATTATCACGGCCCCCCTGCATAATACGTACACGTACGTTTTGTCCTTTTATTTTCATTTTTTTTTTCCAC consensus: *********** ** ** * ***** ** * * **** ** * * ** * * **** ** *** * *** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB DDDDDD Sbay_spli: BBBBBBB DDDDDDD DDDDDD known....: ======================================================================================================================== 1680~1800: Scer.....: ACAGAAAGAAGCATCTAAAAAGATTAGCAGCTCCACACCACTGGTTATTGGACAAGTTGTCCGGTTGTTACGCCCCAAGACCATCTGCTGGTCCACACAAATTGCGTGAATCCTTGCCAT Spar.....: ACAGAAAGAAGCATCTAAAGAGATTAGCAGCTCCACACCATTGGTTATTGGACAAGTTGTCCGGTTGTTACGCCCCAAGACCATCTGCTGGTCCACACAAATTGCGTGAATCCTTGCCAT Smik.....: atagaaagaagcatctaaagagattagcagctccacaccattggttattggacaagttgtccggttgttacgccccaagaccatctgctggtccacacaaattgcgtgaatccttgccat Sbay.....: GCAGAAAGAAGCATCTAAAGAGATTAGCAGCTCCACACCATTGGTTATTGGACAAGTTGTCCGGTTGTTACGCCCCAAGACCATCTGCTGGTCCACACAAATTGCGTGAATCTTTGCCAT consensus: ***************** ******************** *********************************************************************** ******* known....: ==>= 1800~1920: total....: ====== Scer.....: TGATTGTCTTTCTAAGAAACAGATTAAAGTATGCTTTGAACGGCCGTGAAGTCAAGGCTATCTTGATGCAACGTCACGTTAAAGTGGACGGTAAGGTTAGAACCGACACTACCTACCCAG Spar.....: TGATTGTCTTCCTAAGAAACAGATTAAAGTATGCTTTGAACGGTCGTGAAGTCAAGGCTATCTTGATGCAACGTCACGTCAAAGTTGATGGTAAGGTTAGAACCGATACCACCTACCCAG Smik.....: tgattgtctttctaagaaacagattaaagtatgctttgaacggccgtgaagtcaaggctatcttgATGCAACGTCACGTCAAAGTTGACGGTAAGGTTAGAACCGACACCACCTACCCAG Sbay.....: TGATTGTCTTCTTAAGAAACAGATTAAAGTATGCTTTGAACGGTCGTGAAGTCAAGGCCATCTTGATGCAACGTCACGTCAAAGTCGACGGTAAGGTCAGAACCGACACCACCTACCCAG consensus: ********** ******************************* ************** ******************** ***** ** ******** ******** ** ********** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1920~2040: Scer.....: CTGGTTTCATGGATGTCATCACTCTAGATGCCACCAATGAAAACTTCAGATTGGTCTACGATGTCAAGGGTAGATTCGCTGTCCACCGTATCACCGATGAAGAAGCTTCTTACAAGTTGG Spar.....: CTGGTTTCATGGATGTCATCACTCTAGATGCCACCAACGAAAACTTCAGATTGGTCTACGACGTCAAGGGTAGATTCGCTGTTCACCGTATTACCGATGAAGAAGCTTCTTACAAATTGG Smik.....: CTGGTTTCATGGATGTCATCACTCTAGATGCCACCAACGAAAACTTCAGATTGGTCTACGACGTCAAGGGTAGATTCGCTGTTCACCGTATTACCGATGAAGAAGCTTCCTACAAATTGG Sbay.....: CTGGTTTCATGGATGTCATCACCCTAGATGCCACCAACGAAAACTTCAGATTGGTCTACGACGTCAAGGGTAGATTCGCCGTCCACCGTATCACCGAAGAAGAAGCCTCTTACAAGTTGG consensus: ********************** ************** *********************** ***************** ** ******** ***** ******** ** ***** **** 2040~2160: Scer.....: GTAAGGTCAAGAAGGTTCAATTAGGTAAGAAGGGTGTTCCATACGTTGTTACCCACGATGGTAGAACTATCAGATACCCAGACCCAAACATCAAGGTCAATGACACTGTTAAGATCGACT Spar.....: GTAAGGTTAAGAAGGTCCAATTGGGTAAGAAGGGCGTTCCATACGTTGTTACCCACGATGGTAGAACTATCAGATACCCAGACCCAAACATCAAGGTCAATGACACTGTTAAGATCGATT Smik.....: GTAAGGTTAAGAAGGTCCAATTGGGTAAGAAGGGTGTTCCATATGTTGTTACCCACGATGGTAGAACTATCAGATACCCAGACCCAAACATCAAGGTCAATGACACCGTCAAGATTGATT Sbay.....: GTAAGGTCAAGAAGGTCCAACTAGGTAAGAAGGGTGTTCCATACGTTGTCACCCACGATGGTAGAACTCTAAGATACCCAGACCCAAACATCAAGGTCAATGACACCGTCAAGATCGATT consensus: ******* ******** *** * *********** ******** ***** ****************** * *********************************** ** ***** ** * 2160~2280: Scer.....: TGGCCTCTGGTAAGATTACTGATTTCATCAAGTTCGATGCCGGTAAGTTGGTTTACGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATCGTTCACAAGGAAAGACACGATGGTG Spar.....: TGGCCTCTGGTAAGATTACTGATTTCATCAAGTTCGATGCCGGTAAGTTAGTTTATGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATCGTTCACAAGGAAAGACACGATGGTG Smik.....: TGGCTTCTGGTAAGATCACCGATTTCATCAGTTTCGATGCCGGTAAGTTAGTTTACGTTACTGGTGGTCGTAACTTGGGTCGTATCGGTACTATTGTTCACAAGGAAAGACACGATGGTG Sbay.....: TGGCCTCTGGTAAGATCACCGACTTCATCAAGTTCGACGCTGGTAAGCTAGTTTACGTTACCGGTGGTCGTAACTTGGGTCGTATCGGTACCATTGTTCACAAGGAAAGACACGATGGTG consensus: **** *********** ** ** ******* ***** ** ****** * ***** ***** ***************************** ** ************************* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD 2280~2400: Scer.....: GTTTCGATTTAGTTCACATCAAGGACTCCTTGGACAACACTTTCGTCACTAGATTGAACAATGTCTTCGTCATCGGTGAACAAGGTAAGCCTTACATTTCTTTGCCAAAGGGTAAGGGTA Spar.....: GTTTCGATTTAGTTCACATCAAGGACTCCTTGGACAACACTTTCGTCACTAGATTAAACAATGTCTTCGTCATTGGTGAACAAGGTAAGCCTTACATTTCTTTGCCAAAGGGTAAGGGTA Smik.....: GTTTCGACTTAGTTCACATCAAGGACTCCTTGGACAACACTTTCGTCACTAGATTGAACAATGTCTTCGTCATTGGTGAACAAGGTAAGCCTTACATCTCTTTGCCAAAGGGTAAGGGTA Sbay.....: GTTTCGACTTGGTTCACATCAAGGACTCCTTGGACAACACTTTCGTCACCAGATTAAACAACGTTTTCGTCATTGGTGAACAAGGTAAGCCATACATCTCTTTGCCAAAGGGTAAGGGTA consensus: ******* ** ************************************** ***** ***** ** ******** ***************** ***** ********************** 2400~2520: Scer.....: TCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAGAGCTCAACAAGGTTTATAAatttcataacaacttaattattttcttcttttgtatatctccattaatgtttattagaaattga Spar.....: TCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAGAGCTCAACAAGGTTTATAAatttcataacaacttaattattttcttcttttgtatatctccattaatgtttattagaaattga Smik.....: TCAAGTTGTCTATTGCGGAAGAACGTGACAGAAGAAGAGCTCAACAAGGTTTATAAatttcataacaagttaattattttcttcttttgtatatccccattaatgtttattagaaattga Sbay.....: TCAAGTTGTCTATTGCTGAAGAACGTGACAGAAGAAGAGCTCAACAAGGTTTATAAatttcataacaacttaattactttcttcttttgtatatctccattaatgtttattagaaattga consensus: **************** *************************************************** ******* ****************** ************************ 2520~2640: Scer.....: attttaaaataatacatcgtatcttcctttttcgactgg---------------cagtaatataacgt-----------ataatatatatatta-----------ggtgtgtgtatatat Spar.....: attttaaaataatacatcctatctccctctatcaattgg---------------ttgtaatataatgt-----------ataa--tatacatta-----------cgtgtgtgtgtatgt Smik.....: attttaaaataatacatcctatcttcccctatcatccggcacaaaaaataatatcaataatataatatcaatgacagtaatagcactaatgctaataggggcgagaacgtgtgtgtatag Sbay.....: atttaaaacaaaaactatctatccttcttctcttccccac--------------ccgagtgctagtgc-----------atac-gtgtgtcccgcctgg---ctgggcctgtgtacatgt consensus: **** *** ** ** **** * ** *** ***** ** Spar_spli: DDDDDD 2640~2760: Scer.....: atccgtattg-taatattgatagtaaaa-atacgcta-acc--ctgaaatagaaggcgtatgataagacgtactgacactacgcactaccacaatatatgcgtatgtgtgtgtgtgtgtg Spar.....: atgtgtattg-taatattgataacagaatatatgcct-accatgtgaaccggatggtttatgataagacgcgtcgacactaagcgcgactacaatgtatac------------------- Smik.....: gtgtctattg-taatattgagagga------acatca-acc--gtccatcagatggtttataataaggtgtacgggagctacgcgccgctacgatgtatac------------------- Sbay.....: gtgctttctgttcatatttatgcgg----ttacattagaatatatatatacttacttatacattagtttgtgtggcgtgcacgctca................................. consensus: * * ** * ***** * * * * * ** ** * * * ** * * ** ** *** * Scer_spli: DDDDDD DDDDDD Spar_spli: DDDD 2760~2833: Scer.....: tgtgtgtgtgtgtgtgtgattgtattggaatatatatacttactaaaattagcttatatggttcgcatattga Spar.....: ---------gtgtttgtgattgtattagaatatatatacttactaaatttagcttatacggtttgtatattga Smik.....: ---------gtgcgtgcgattatattagaatatatatacttactaaaatcagtttatatgattcgtatattta consensus: *** ** **** **** ******************** * ** ***** * ** * ***** * { alias......: ['DID4', 'GRD7', 'REN1', 'VPL2', 'VPS2', 'VPT14'] chromosome.: 11 description: end........: 438182 exons......: [(1, 60), (129, 767)] gene.......: DID4 introns....: [(61, 128)] length.....: 767 name.......: YKL002W plength....: 255 start......: 437416 tdist......: 228263 type.......: ORF up.........: 1 } Scer: 1 donors and 1 branches Spar: 1 donors and 1 branches Smik: 1 donors and 1 branches Sbay: 1 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 365), ('Spar', 365), ('Smik', 365), ('Sbay', 365)] ] [ ->[('Scer', 412), ('Spar', 412), ('Smik', 412), ('Sbay', 412)] ] 0~120: Scer.....: -------------cttagtgaaaagggtggttttgcgttattctttcctctgttgaagcttt-tctattttgtttaagctgaactagtgg----gagtttcca-ttaaaaggctaaagtc Spar.....: ------------ttttagtgaaaagtgtgcttttgtgt-attctgtcctcagttaaaccttg-tctattt-gtttaagctgggctaatgg----gagtttccaattatatggctaaagtc Smik.....: -------------tttggtggaaattctactttagtgttattgtgtactcagttaaaactttgtctattatgtttga-ctgagctaatgg----caacttccacttatatggttaaaatg Sbay.....: ttctagcaaagggtcttcttagtattacccaattctattattatattatcccgttgaaccttgtctatat-gcttatgctgggcaaataaatgccaatttcgaattatatggttaaaatc consensus: * * * * * *** * * ** * * * * ***** * ** *** * * * * *** * *** * ** **** * 120~240: Scer.....: ttgttgaaacttttccgggttagatgataactgcgaaaagatagataaaatcagcattaaagggacttcgtctcctcctaatcagaaatcatcctttcgaattatgcgtattca-gttga Spar.....: ttggtaaaacttctccgggttagatgatggctgcgaaaagatagataaa-ccagcattaaagggtctttatcctctcctaa-caaaaattatcttctcgaattatgcatattct-gatgg Smik.....: ctgctaaatattttccgggttagacattatttgcgaaaagatggataaa-gcagcatcatagggatttcccgtcgtcataaccgaaaagcatatcctcaaatcctgcacactcaagtttc Sbay.....: ttgttttcagtcttccgggttagaaaatatttgcgaaaacatagagaaa-ggaacattaaagggacctggcgttccatgaaaccaaaagcctttcacgaaagtctacgt-ttcaagtcgg consensus: ** * * *********** * ******** ** ** *** * *** * **** * ** * *** * ** * * ** * 240~360: Scer.....: agcgtatttgtgaccagtgtacttcaaggctgattgtttcacccttggacacagaacgttaaacaATGAGTTTGTTTGAGTGGGTATTTGGAAAGAATGTCACTCCGCAAGAGAGGTTAA Spar.....: agcgtatctgggactagtgcacttctaggctggttatttcaccctttgatacagaacgttaaacaatgagtttgtttgagtgggtgtttggaaagaatgtcactccgcaagaaaggctaa Smik.....: aacgatcccgtttctatttcatctaaaggcttattgttttaccttttgatatagaacgttgaagaatgagtttgttcgagtgggtatttgggaagagtgttactccgcaagaaaggctaa Sbay.....: aacgttactgtgatcacttttcttcaagcaagatcatttcaacctt-gaagggaatcatcaaacaatgagtttgtttgagtgggtcttcggaaagagtgtcacaccgcaagaaaggctaa consensus: * ** * * * * ** * *** * * ** ** * * * ** ************ ******** ** ** **** *** ** ******** *** *** 360~480: total....: ====== ======= Scer.....: AAAAAGTATGTT---GTTCTGT----ATTTGGATCAGTTATTTTAGTGAACATACTAACGTTAATTATTTGAGTTTTTAGAATCAAAGGGCTTTAGAAAGGACTCAGAGGGAGCTTGAAA Spar.....: aaaaagtatgta---gttctgt----atttggattggttgctttggtggacatactaacgttaattatttgagtttc-agaatcaaagggctttagaaagaacacagagggaacttgaaa Smik.....: aaaaagtatgt----attttgc----atttagatt-gtcattatggtggacatactaacgttgattaataacgttat-agaatcaaagggctttggaaagaactcagagagaactcgaga Sbay.....: aaaaagtatgtagctattctattattattctaattggttatttttgtaatcatactaacattggtta-ttatattgt-agaatcaaagagctttagaaaggacccaacgagaacttgaga consensus: *********** ** * *** ** ** * * ** ********* ** *** * ** ********** ***** ***** ** ** * ** ** ** * Scer_spli: DDDDDD BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >========================================================================>= 480~600: Scer.....: GAGAAAAGAGAAAATTGGAACTACAAGATAAAAAACTTGTATCAGAAATTAAAAAATCGGCAAAGAATGGGCAAGTTGCAGCTGCGAAAGTTCAAGCAAAAGATTTAGTAAGAACCCGGA Spar.....: gagaaaagaggaaactggaactgcaagataaaaagcttgtatcagaaattaaaaaatcggcaaagaatgggcaagttacagcagcgaaggttcaagcaaaagatttggtgagaaccagga Smik.....: gagaaaagaggaaactagagctgcaagataaaaaacttgtatcagaaatcaaaaaatcggcaaagaatgggcaagttacagcagcaaaagttcaagctaaagatttagtaagaaccagga Sbay.....: gagaaaagaggaaattggagctgcaagataaaaaacttgtatcagaaattaaaaaatctgcaaagaatgggcaagttgcagcagcaaaagttcaagcaaaggacctagttagaaccagga consensus: ********** *** * ** ** *********** ************** ******** ****************** **** ** ** ******** ** ** * ** ****** *** 600~720: Scer.....: ATTACATCCAAAAATTTGACAACATGAAAGCTCAACTTCAGGCGATATCATTGAGAATACAGGCCGTTCGAAGTAGTGACCAAATGACACGTTCTATGAGCGAGGCCACTGGTCTTTTGG Spar.....: attacatccagaaatttgacaatATGAAAGCTCAACTTCAGGCCATATCATTGAGAATACAGGCCGTTCGAAGTAGTGACCAGATGACACGTTCTATGAGCGAGGCCACTGGCCTGTTGG Smik.....: attacattcaaaaatttgacaacATGAAAGCTCAACTTCAAGCCATATCCTTGAGGATACAGGCTGTTCGAAGTAGTGACCAAATGACACGTTCTATGAGTGAGGCCACTGGATTATTGG Sbay.....: attacattcagaaatttgacaacATGAAGGCTCAACTTCAAGCCATATCACTAAGAATTCAAGCTGTTCGAAGTAGTGACCAAATGACACGTTCGATGAGCGAGGCAACTGGTCTATTGG consensus: ******* ** *********** ***** *********** ** ***** * ** ** ** ** ***************** *********** ***** ***** ***** * **** 720~840: Scer.....: CTGGAATGAACAGAACAATGAATCTACCTCAGTTGCAAAGGATATCGATGGAGTTTGAAAAGCAGAGTGATTTGATGGGTCAACGACAGGAATTCATGGACGAAGCTATTGATAACGTCA Spar.....: CTGGAATGAACAGATCAATGAATCTACCTCAGTTGCAAAGGATATCTATGGAATTTGAAAAGCAAAATGATTTGATGGGTCAAAGGCAGGAATTTATGGATGAAGCTATTGATAACGTTA Smik.....: CTGGAATGAACAGATCAATGAATTTACCCCAATTGCAAAGGATATCAATGGAATTTGAAAAGCAAAGTGATTTGATGGGTCAAAGGCAGGAATTCATGGATGAGGCTATTGATAATGTCA Sbay.....: CAGGGATGAACAGATCGATGAATTTGCCCCAGTTACAAAGGATATCGATGGAATTCGAAAAGCAAAATGATTTAATGGGCCAAAGACAAGAATTTATGGATGAAGCTATTGACAACGTCA consensus: * ** ********* * ****** * ** ** ** *********** ***** ** ******** * ****** ***** *** * ** ***** ***** ** ******** ** ** * 840~960: Scer.....: TGGGTGATGAGGTGGATGAAGACGAAGAAGCTGACGAAATTGTAAATAAAGTTCTTGATGAGATTGGAGTGGATTTGAATTCACAGTTGCAAAGCACGCCTCAAAATCTGGTTTCTAATG Spar.....: TGGGCGATGAGGTGGATGAAGATGAAGAAGCAGACGAAATTGTAAATAAAGTCCTGGACGAGATTGGAGTGGATTTGAATTCACAGTTGCAAAGTACGCCTCAAAATCTGGTTTCCAATG Smik.....: TGGGCGATGAGGTGGATGAAGATGAAGAAGCAGACGAAATCGTAAATAAAGTTCTGGATGAGATTGGAGTGGATTTAAATTCGCAGTTGCAAAGCACACCTCAAAATTTGGTTTCAAACG Sbay.....: TGGGTGATGAGTTAGATGAAGATGAAGAAGCAGATGAAATCGTAAATAAGGTTTTGGATGAGATTGGAGTAGATTTGAATTCACAGTTGCAGAGCACACCTCAAAACTTGGTCTCTAACG consensus: **** ****** * ******** ******** ** ***** ******** ** * ** *********** ***** ***** ******** ** ** ******** **** ** ** * 960~1080: Scer.....: CGCCGATCGCAGAAACAGCGATGGGGATTCCTGAACCTATTGGCGCCGGATCAGAATTTCACGGTAATCCTGACGATGACTTGCAAGCTCGGTTGAACACTTTGAAGAAGCAGACTTGAg Spar.....: CACCAGTTGCGGAAACAGCAATGGGGATTGCAGAACCTATTGGTGCCGGATCAGAATCTCACGGTAATCCTGACGATGACTTGCAAGCTCGGTTGAACACTTTGAAGAAGCAGACCTGAg Smik.....: CACCGATTGCAGAAACAACAATAGGCATTGCAGAACCTATTGGTGCCGGGTCGGAATCTAATGGTAATCCTGATGATGACTTGCAAGCTCGGTTGAACACTTTGAAGAAGCAGACTTGAg Sbay.....: CGCCAGTTGCAGAAACAATAGTAGGAATTGCAGAACCCATTGGAGCAGGATCTGACTCTCATGGAAATCCTGATGATGAGCTACAAGCTAGATTAAACACTTTGAAAAAGCAGACTTGAg consensus: * ** * ** ****** * ** *** * ***** ***** ** ** ** ** * * * ** ******** ***** * ****** * ** *********** ******** **** 1080~1200: Scer.....: -cgctctgagtatatttaatgaataataggtctatactataatacatcaactactgatatcaa-agtaggcacttagaatcaaaaggcttccgaaaatttgttcagtttttcactttac- Spar.....: -tgttttaactatatgtaataagtgatgcgtttatactataagaaattaattgctgaggtcaa-agtaagcattaagagtcagaaagcttccggaa-tctgtttagttttccactttac- Smik.....: tctttctgaggatatgtagtatatgatgtgtttatgctataacggattaaatactttagtcaa-gataagccttcggtgtcagaaggcgaccgaaacttggcttgaatcttcactttac- Sbay.....: -ttcttcaagttcatgcag-aaatgatggttatatagcattggtgattaaatgctggagcccgtactaaatatatactataggatacagcttgtgaaactttaaaatcgttcattctacc consensus: * * ** * * ** * *** ** ** ** * ** * ** * * * * * ** * *** 1200~1319: Scer.....: -tcaatctcgtcactaaagttttctttttttttcgaatgaatcctcgaataaatatgttctatattatatatatacatcttt---tatatatcattaaatgtacagtaatcggtcaaa- Spar.....: -tcaaacccgtcactaaagttttcttttttt---gaatgagtcctcgaataaatatgttctatattat------acatcttt---tatatatcattaagtgtacagtaatcgatcaaa- Smik.....: -tcgatctttttatttaagttttccttgcct--cgaacacgttttcaaataaatatgttctatattat------acattcttatatatatatcattacatgcacagtaattaatcagag Sbay.....: atcctcctcaacatctacagtttttaatgcccttgaaggggctttcaaataaatatgttctatattat------acatcttt-----tatatcattaaatgcacagtaatttataagat consensus: ** * * * *** *** ** ********************* **** ** ********** ** ******** * * * { alias......: ['SFT1'] chromosome.: 11 description: intra-Golgi v-SNARE end........: 430270 exons......: [(1, 36), (178, 435)] gene.......: SFT1 introns....: [(37, 177)] length.....: 435 name.......: YKL006C-A plength....: 145 start......: 429836 tdist......: 236175 type.......: ORF up.........: 0 } Scer: 4 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 374)] ->[('Scer', 691)] ->[('Scer', 1068)] ->[('Scer', 1309)] ] [ ->[('Scer', 1380)] ] 0~120: Scer.....: tgtttattttatttttcacgactctctttgttcactaagacaaacaattaaatttgttatacaatcggcagacctgatcaacttaaccttagattacttttttttcagttcaatagtact consensus: ************************************************************************************************************************ 120~240: Scer.....: cgacgagtacgaagggcagtccactgaaagctctacgctctctccgttgccaattgggctgagaatggaaacactgcgcgctgaagggaaacccgattatggaaaaatgcacgcagctgc consensus: ************************************************************************************************************************ 240~360: Scer.....: aagcagcaatctctcgtaaaccgctcttttccgggcggaaagttaggccgacacctgtttgaagcttcataaaatgcaaaatcgaaaaaaaattgataacggacactcaaaatttgatat consensus: ************************************************************************************************************************ 360~480: Scer.....: ttcacacatattatgtatgtgatgtcaagatgtaaaaatagtgtatgggtgtatttgcgctgtcaattattttactcagagtatagttacattctggcaagaatttgctggttttgtctt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 480~600: Scer.....: tttttacttcacaactaatgctggatttttttatttaaacctaatttcttcagtgaactccaatgtgtattcatgtttgattttaaaagcttcaattttaaaagcttcaattttaaatat consensus: ************************************************************************************************************************ 600~720: Scer.....: ccgatgactgttaatcgcagctgctagtgagatgactgacaaaaggttcagtagaaacataaaatatataacaaatgtgttgagaatgatagtatgatacagtggtatcatatttcgttc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: ctatttgaggtaccagtagttcttatcaagaagattcaatgagaaaggtaactgaatgatgatataatttgcgatctagggctaatcacttggaacaccgccatgttctatatgggtgat consensus: ************************************************************************************************************************ 840~960: Scer.....: tagcgaagtgcgaaaaattttttatctgatattttccttgaacaatatttctaataacacttgcgttgttgcaactggcagattaaccatgttgctcaatattccttccttgtatatggg consensus: ************************************************************************************************************************ 960~1080: Scer.....: agaacatcttgaggcaatgtttagaatttaaaaatgtgtgctcccttaaactacgctactcagaaaggatcttcgtgtgtacggtaactgaccaatgaatattgtgcggtaagtatctta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1080~1200: Scer.....: tgtttcttgttgctgaatgtacggttcatgcagtaaattagctactctagttttcttgttattgcaagaagccgcgcattgctacatgcagaaaaaaaaagaggaaataatataaggtat consensus: ************************************************************************************************************************ 1200~1320: Scer.....: atcattaagaaggatactggaagaactcaacaaggagagaacggtagaaaggtaatatataatcatcatagcgATGTCAAATTCTAGGTATTCTCAGACCGAATCAAACGTATGTAAATC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >========== 1320~1440: Scer.....: ACCGGCAACACGCATAGGTGTTTAGAATGGGACCTAGCTTGCTATATGGATGTTATAAGCTACTAACTATTGCTTCTGTACACCGGATGAGCAGATGTATCATCCCTTCATGTACATGTA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================== 1440~1560: Scer.....: CTTTAAACAGAATGATAGGAAACTAGAGGGGTTAGCCAATAAATTAGCTACATTCAGAAACATAAACCAAGAGATTGGAGACCGAGCGGTCTCTGACAGTTCTGTCATAAACCAAATGAC consensus: ************************************************************************************************************************ known....: ========>= 1560~1680: Scer.....: AGATTCATTGGGATCGATGTTTACCGATATCAAAAATTCGTCCTCAAGGTTAACCCGATCATTAAAGGCTGGTAATAGCATATGGAGAATGGTGGGTTTGGCGTTATTAATATTCTTCAT consensus: ************************************************************************************************************************ 1680~1797: Scer.....: TCTATATACCCTGTTTAAGTTATTTTAGtgagccaatcaagccaaaaataaataatgtacatagatgtattcaatttaagaaataggaagagaatggaataaggcaggcatgaaatt consensus: ********************************************************************************************************************* { alias......: ['RPL14A'] chromosome.: 11 description: Ribosomal protein L14A end........: 432358 exons......: [(1, 129), (528, 815)] gene.......: RPL14A introns....: [(130, 527)] length.....: 815 name.......: YKL006W plength....: 271 start......: 431544 tdist......: 234087 type.......: ORF up.........: 1 } Scer: 7 donors and 1 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 104)] ->[('Scer', 221)] ->[('Scer', 633)] ->[('Scer', 1186)] ->[('Scer', 1402)] ->[('Scer', 2122)] ->[('Scer', 2237)] ] [ ->[('Scer', 1746)] ] 0~120: Scer.....: cgctatgatgattatatattacctttctaccgttctctccttgttgagttcttccagtatccttcttaatgatataccttatattatttcctctttttttttctgcatgtagcaatgcgc consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: ggcttcttgcaataacaagaaaactagagtagctaatttactgcatgaaccgtacattcagcaacaagaaacataagatacttaccgcacaatattcattggtcagttaccgtacacacg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 240~360: Scer.....: aagatcctttctgagtagcgtagtttaagggagcacacatttttaaattctaaacattgcctcaagatgttctcccatatacaaggaaggaatattgagcaacatggttaatctgccagt consensus: ************************************************************************************************************************ 360~480: Scer.....: tgcaacaacgcaagtgttattagaaatattgttcaaggaaaatatcagataaaaaatttttcgcacttcgctaatcacccatatagaacatggcggtgttccaagtgattagccctagat consensus: ************************************************************************************************************************ 480~600: Scer.....: cgcaaattatatcatcattcagttacctttctcattgaatcttcttgataagaactactggtacctcaaataggaacgaaatatgataccactgtatcatactatcattctcaacacatt consensus: ************************************************************************************************************************ 600~720: Scer.....: tgttatatattttatgtttctactgaaccttttgtcagtcatctcactagcagctgcgattaacagtcatcggatatttaaaattgaagcttttaaaattgaagcttttaaaatcaaaca consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: tgaatacacattggagttcactgaagaaattaggtttaaataaaaaaatccagcattagttgtgaagtaaaaaaagacaaaaccagcaaattcttgccagaatgtaactatactctgagt consensus: ************************************************************************************************************************ 840~960: Scer.....: aaaataattgacagcgcaaatacacccatacactatttttacatcttgacatcacatacataatatgtgtgaaatatcaaattttgagtgtccgttatcaattttttttcgattttgcat consensus: ************************************************************************************************************************ 960~1080: Scer.....: tttatgaagcttcaaacaggtgtcggcctaactttccgcccggaaaagagcggtttacgagagattgctgcttgcagctgcgtgcatttttccataatcgggtttcccttcagcgcgcag consensus: ************************************************************************************************************************ 1080~1200: Scer.....: tgtttccattctcagcccaattggcaacggagagagcgtagagctttcagtggactgcccttcgtactcgtcgagtactattgaactgaaaaaaaagtaatctaaggttaagttgatcag consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1200~1320: Scer.....: gtctgccgattgtataacaaatttaattgtttgtcttagtgaacaaagagagtcgtgaaaaataaaataaacaATGTCCACCGATTCTATTGTCAAGGCTTCTAACTGGAGATTAGTCGA consensus: ************************************************************************************************************************ 1320~1440: Scer.....: AGTTGGCCGTGTGGTTTTGATCAAGAAGGGTCAATCCGCAGGTAAATTGGCCGCTATCGTCGAAATTATTGACCAAAAGAAGGTATGTTAAATCCGGAAAACCTATCATCGATTTGAGGA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >===================================== 1440~1560: Scer.....: GGGAAATGAACGAGGAATGAGATTTAGGCTACGAAAAAGTGCTGGCAAATATCCAATCCGTTACCATGGATGAAGCTACTTGTAAACGATAAGTAAATGTGAAAATACACATTGCGATAG consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1560~1680: Scer.....: AGATACAAAAAAGTCTTTATTTCCCTGTTGGAGTGGCCTATAGTGGATTATTTATTTATTTTGCTAGCAGCTTACCTAGTTTCAGAAAGGTGATGACCCATATTTGCGCAGTTAATTCTT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1680~1800: Scer.....: AAAGAGCCTGACCATGTTTCCTCAAATATTAAACCATGCCTTCCATCGTTTTGAAAAAATTTCGTTTACTAACAACTTTTATGAATAATTTTTTTAAATTATTTGTTATAATTATTATAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================================================================================>= 1800~1920: Scer.....: GTTTTGATTGACGGTCCAAAAGCTGGTGTTCCACGTCAAGCCATCAACTTGGGTCAAGTTGTCTTAACTCCATTGACCTTTGCTCTACCAAGAGGTGCTAGAACTGCTACCGTTTCTAAG consensus: ************************************************************************************************************************ 1920~2040: Scer.....: AAGTGGGCTGCTGCTGCTGTCTGCGAAAAGTGGGCTGCTTCATCTTGGGCTAAGAAGATTGCTCAACGTGAAAGACGTGCTGCTTTGACTGACTTTGAAAGATTCCAAGTTATGGTTTTA consensus: ************************************************************************************************************************ 2040~2160: Scer.....: AGAAAGCAAAAGAGATACACTGTCAAGAAGGCTTTGGCTAAGGCTTAAaatatgtacatgatctttaattctgatatatttcgtatgtaattttatctttaactggtgattcttttaata consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2160~2280: Scer.....: aataaactacaatattataactattgaaagcctctgttattcacacatctttggaaaaaaaaaaatacaaatacccagtgagtactaagtaaatttggagtacctaagggcttgtatcgg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2280~2400: Scer.....: tggggttcctgacctagctttatgttttacaaacgcatgcatataaaatttacaaaactacaaaaaccatgaacacaatgaaaagaaggaaaaagagtaggtttgtcgtgaaagtacacg consensus: ************************************************************************************************************************ 2400~2460: Scer.....: cctctgaagttttgttatcatattactataatattgttacaactcttaggaatcttatat consensus: ************************************************************ { alias......: ['TEF4', 'EFC1'] chromosome.: 11 description: Translation elongation factor EF-1gamma end........: 284097 exons......: [(1, 205), (532, 1565)] gene.......: TEF4 introns....: [(206, 531)] length.....: 1565 name.......: YKL081W plength....: 521 start......: 282533 tdist......: 282533 type.......: ORF up.........: 1 } Scer: 5 donors and 2 branches Spar: 3 donors and 2 branches Smik: 1 donors and 2 branches Sbay: 1 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 784), ('Spar', 784), ('Smik', 784), ('Sbay', 784)] ->[('Scer', 388), ('Spar', 388)] ->[('Scer', 841)] ->[('Scer', 2551)] ->[('Scer', 2567)] ->[('Spar', 1037)] ] [ ->[('Scer', 1091), ('Spar', 1091), ('Smik', 1091), ('Sbay', 1091)] ->[('Scer', 326)] ->[('Smik', 239)] ->[('Spar', 1861)] ] 0~120: Scer.....: -ctcagtctcctatatctttcaattcccggacttt-ctttatcacttgcaacaa-cgtctcagtcctcacttgttattcatctcttggtcatctcatctcttttattgtacttt------ Spar.....: ctctattctcctctatcttttaattcccagacttttcttcaccacttactataa-c-cttcgatcctcacttactattcatctctagctcatctcatctcttttattgtacttt------ Smik.....: -ctctctttcccaaaaattcaaactcacggatttt-cttcaccacttgatatga-ctttgcggttagcacttgctactcatcactacctcatctcatctcttttattgtaccta------ Sbay.....: -ctttattttctcaactttatatcttccagaattt-cttcaccacttgctacgagctttttgttctgagcttgccattcatctttagctcatctcatctcttttattgtactttatcctc consensus: * * * * ** * * * ** *** *** * ***** * * * * *** * ***** * *********************** * 120~240: Scer.....: cctcttttctttaccggagatgagaataaaaa-gaattcattttaaaaaattttcaatttggtgtctgggtg---aaactttttaat-cgtgtaatcccaattaaaccactctactttac Spar.....: cctcttttctttaccggagatgacaataaag--gaattcatcttaaaaaattttcaacttggtgtctgggtg---aaaattattgattcatataatcctagtggaatcactctaacttac Smik.....: ccacatttctctaccggagatgacaataaaaaagaatccatcttaaaaaattttccactcgatgtctgggtg---tacaatactgatatttctgttcccagtccaattattttaagttat Sbay.....: tctctcttctctaccggaaatgacgagaaaaaaaatttcatcttgaaaaattttcagcatggtgtctgggtgttaaagttcgatgattcccaagacctcgatcgactcataaactctcaa consensus: * * **** ******* **** * *** * * *** ** ********** * ********** * * ** * * * * * * Smik_spli: B 240~360: Scer.....: tttaattggtacacgaactca-ttacacacctttgcctctattgcttgtgtcaatcgtgttgagagaggaagcccaaaacaagggaaattaacctctgtaggcaagccatcacatttggc Spar.....: tttaac-ggtacacaagctca-ttatatgcctttacccccattacttgtgtcaattatgttgggagtccaatcccataatggtgaagaataaccactgtagacgtagcatcacgtttaat Smik.....: attaac-tatacccaagctca-ttatatgcctctgcctctgttacttctaacaatcccgctggaaaatcaagtgtgctataatgaagaataaccaccgcaggcttaccggcatatttggt Sbay.....: attatc-tagaaacaagcccagctgcatgcttttgcctcaaccataaccgttgaacagacgtagacaattagccagggacaatcgaggccaaattccgtagacgtaccacctggcttcgt consensus: *** * * * * ** * * * * * ** * * * * * * ** * * ** * * * ** Scer_spli: BBBBBBB Smik_spli: BBBBBB 360~480: Scer.....: aatagcagccctcatttaatttaattcggcatgtggccggcagggtaatgcgctc--tgctgctgacaaaattgaaagaaaaatttttttcatcaacagtttgcaatactttctttttca Spar.....: aatagcagccctcatttaatttaattcagtatgtgaccggcagggtgacgcgctc--tgttgctgacaaaattgaaaaaaaaaatttt--cagcagcagctggcaaaactttctttt-ca Smik.....: gatggcagccctcatttaatttgattcaaggtgtcaccggtagggtgacgcgctt--tgttgctgacaaaatttgaagaaaaaaaattttcagcaacagcagacag-actttctttt-ca Sbay.....: cgtggcagccctcatt-aatttgatctaagattcgaccggcagggtgacgcgcctcgtgttgccgacaaatgtgaagaaaaaattttcagcagcagtgggcgatatttatttctttt-ca consensus: * ************ ***** ** * **** ***** * **** ** *** ****** * * ***** * ** ** * * ******** ** Scer_spli: DDDDDD Spar_spli: DDDDDD 480~600: Scer.....: tatttaattcatccattccgtcgttaattttgttcaaaactggtgtccatccttaataccaactcaattct-ttgattttggccctcgatagattcaagATGTCCCAAGGTACTTTATAC Spar.....: tatttaattcatctattccctcttcaattttgttcaaaactagagtccatcctcattaccatctcaattct-ttgattttggccctcgatagattcaagATGTCCCAAGGTACTTTATAC Smik.....: tatttaattcatcaattcccttgtctagtttattgaaaacaagtgtccatcctcggtatctcttcaatcct-ttaattttggccctcgatagattcaagATGTCTCAAGGTACTTTATAT Sbay.....: tatttaattgatccattcgctcgtcacttttgtttgaagcttctgttcagtttccctctc-cttcaatcctcttgattttggtcctcgatagattcaagATGTCCCAAGGTACTTTATAC consensus: ********* *** **** * * *** ** ** * ** ** * * * ***** ** ** ******* ********************* ************** 600~720: Scer.....: ATTAATAGATCTCCAAGAAACTACGCTTCTGAAGCTTTGATTTCTTACTTTAAACTAGATGTCAAGATCGTTGATCTAGAACAATCTAGCGAGTTTGCTTCTTTGTTCCCATTGAAGCAA Spar.....: ATTAACAGATCTCCAAGAAATTTCACTGCCGAAGCTTTGATTTCTCACTTCAAATTAGATGTCAAGATCGCCGATCTCGAACATTCTAGCGAATTCGCCTCTTTGTTCCCATTAAAGCAA Smik.....: GTTAACAGATCTCCAAGAAATTTCACTGCTGAAGCTTTGATTTCTTACTTCAAATTAGATGTCAAGATCGTCGATAAAGAGCAATCTAGCGAATTTGCTTCTTTGTTTCCATTGAAGCAA Sbay.....: ATTAACAAGTCTCCAAGAAACTTTGCTTCCAAAGCTTTGATTTCTCATTTCAAACTAGATGTCAAAATCGTTGACCTAGAGCAAGCCAGCGAGTTTGCTTCTTTGTTCCCATTGAAGCAA consensus: **** * *********** * ** * ************** * ** *** ********** **** ** ** ** * ***** ** ** ******** ***** ****** 720~840: total....: ====== Scer.....: GCCCCTGCATTTTTGGGTCCAAAGGGCTTAAAGCTAACTGAAGCTTTGGCTATCCAATTTTATTGTATGTTCCATATTTTATTTTAACACTTCCACATACATTGTT--TTGCGCGTTTCC Spar.....: GCTCCAGCTTTCTTGGGTCCAAAGGGTTTAAAGCTAACTGAAGCTTTGGCTATTCAATTTTATTGTATGTTTCAATACTTTTCTT-----TTTAACATAAGTTGTT--TTGTGCATTTCC Smik.....: GTTCCAGCTTTCTTGGGTCCAAAGGGTTTAAAGTTGACTGAAGCTTTGGCTATCCAATTTTATTGTATGTT--ATTTTTTTTCTT-----TTTCACATGAATTACT--CTGTGCCTTTTC Sbay.....: GCTCCAGCTTTCTTGGGACCAAAGGGTTTCAAGCTAACCGAAGCTATTGCCATCCAATATTACTGTATGTTATTTTCCTTTTTTTAG---TCTCACATCAACTGTGCATTATCTCTTTTG consensus: * ** ** ** ***** ******** ** *** * ** ****** * ** ** **** *** ******** ** * ** * **** * * *** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >======================================================= 840~960: Scer.....: C---GTTCGTTTATTTGGCACGTCAT-TTTTCTTCGAAACATAATGATGAAAAAAAATTTTATCAAACAGTTATCCCTGTCTGAATGGGTAATAATAGGTAACCTCTCATATGTTGATAT Spar.....: CATCGTTTTTTTTTTTGGCATCTT-T-TTTTTCTCGAAATATAATGATGAAAAAAATTTTTATCAAACAGTTATCCCTGTCTGAATGGGTAATAATAGGTAACCTCTCATATGTTGATAT Smik.....: TATTGTT--TTTTTTTGACATGTCGCATTTCTCTCGAAATATAATGATGAAAAAATATTTTATCATACAGTTATCCCTGTCTGAATGGGTAATAATAGGTAACCTCTCATATGTTGATAT Sbay.....: TTTTGTTTTGTTTTTTTGGTTATATT-CTATTCTCGAAATATAATGATGAAAATTTATTT-ATCATACAGTTATCCCTGTCTGAATGGGTAATAATAGGTAACCTCTCATATGTTGATAT consensus: *** ** *** * * ****** ************* *** **** ****************************************************** Scer_spli: DDDDDDDDD known....: ======================================================================================================================== 960~1080: Scer.....: TTGTATTTCTGATATGTTTCTTAAAGAAAAATGAA--AG--------TCAAAATAA--CAAAAAGGAAG-TACA-AAGCGTGTCCTAATCC-------------AGGAAAAAATATAAAG Spar.....: TTGTATTTCTGATATATTTCATAAAGAAAAATGGA--AGATAAGTGCTGAAAAGAAACTAAAAAAGAAGCTACA-AAGCATGTCCTGAATC-------------ATGAAGAAATATGAAG Smik.....: TTGTATTTCTGATATGTTTCTGAAAGAGAAATGAA--AG-TAATGACAAGAAAAAGTAAAGAGAAGAATATGCAGAAGTGTGTGATGTATCCC------TTCTGGGGAGAAAATAGAGAA Sbay.....: TTGTATTTCTGATATATTTCACACAGAAAGATTATTCAATAAAAAGCAAAAATGAAAGCGAAAGCGGTAGCACATGTTTATATCATCATTTCTGATTTTTAATCAGAAAAAGAAATAAAA consensus: *************** **** * *** * ** * ** * * * ** * * * * * * * * Spar_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: G---ATTGTTTTACTAACAT--TTCTTCAATTAATGGTTGTATAACCATCG-AGATGA-TGTATATTTAGTGGCTAATCAAGTTGCCGATGAAAAAGAAAGAGCTCGCTTATTAGGTTCC Spar.....: A---ATTGATTTACTAACAG--TTCTTCGATTAATGGTTGTATAACCATCG-AGATAC-TATCAATTTAGTGGCTAACCAAGTTGCTGATGAAAAAGAAAAGGCCCGCTTATTGGGTTCC Smik.....: AGAAATTTATTTACTAACAT--TTATTCAATTAATGGTTATGCAACCATTA-AGATA--TATCGATTTAGTGGCTAACTTGATTACCGATGAAAAAGAACAAGCTCGCTTGTTGGGTTCC Sbay.....: GGAATTGACTTTACTAACATGGCTTTTATATCAATGGTGTCACAACCATAATATATGATTCTCGATTTAGTGGCCAACTTAATTGCTGATGACAAGGAAAAGACCCGTTTATTGGGTTCT consensus: * ********** * ** ** ****** ****** * ** * * ********** ** ** * ***** ** *** * ** ** ** ***** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ====================================================================>= 1200~1320: Scer.....: GACGTTATCGAAAAGTCTCAAATCCTTAGATGGGCATCTCTAGCTAATTCCGATGTCATGAGCAACATTGCTCGTCCATTCCTTTCTTTCAAAGGTTTGATTCCATACAACAAGAAAGAC Spar.....: GATGTTATTGAAAAATCTCAAGTTCTCAGATGGGCTTCTCTAGCGAATTCTGATGTCATGTATAACATTGCTCGTCCATTCCTTTCCTTCAAAGGTTTGATCCCATACAACAAGAAGGAA Smik.....: GATGTCATTGAGAAGTCTCAAATTCTCAGATGGGCTGCTCTAGCCAATTCTGATGTCATGTATAACATTGCTCGTCCATACCTTTCCTTTAAGGGGTTGATTCCATACAACAAGAAGGAC Sbay.....: GACCTCAATGAAAAGTCCCAAATCATGAGATGGACATCTTTGGCCAACTCTGATTTGGCCTCCAACATTGCTCGTCCATTTCTTTCCTTTTCTGGTTTGATGCCATACAACAAGAAGGAC consensus: ** * * ** ** ** *** * * ****** * ** * ** ** ** *** * **************** ***** ** ** ***** ************** ** 1320~1440: Scer.....: GTTGATGCTTGTTTTGTTAAAATCGACAACCTAGCTGCTGTCTTCGATGCTAGATTGAGAGACTACACCTTTGTTGCTACCGAAAACATTTCTCTAGGTGACCTTCATGCCGCTGGTTCT Spar.....: GTTGATGCTTGTTTTGTTAAAATTGACCACATCGCTGCTATCTTCGATGCCAGATTGAGAGACTACACTTTTGTTGCTACCGAAAACATTTCTCTAGGTGATCTTCACGCTGCTAGTTCT Smik.....: GTTGATGCTTGTTTTGTTAAAATCGACAACATCGCTGCCGTCTTTGATGCTAGATTGAGAGACTACACTTTTGTCGCTACCGAAAATATTTCTCTAGGTGACATTCATGCCGCTAGTTGT Sbay.....: GTTGACGCTGCTTTTGTTAAGATTGACAATATTGCTGCTGTTTTCGATGCCAGATTAAGAGACTACACTTTTGTTGCAACTGAGAACCTCTCTTTGGCTGATATTCACTCCGCCAGTTCT consensus: ***** *** ********* ** *** * * ***** * ** ***** ***** *********** ***** ** ** ** ** * *** * * *** **** * ** *** * 1440~1560: Scer.....: TGGGCTTTTGGTTTGGCCACTATTTTGGGCCCTGAATGGAGAGCTAAGCATCCTCATTTGATGAGATGGTTCAACACTGTTGCTGCTTCTCCAATCGTGAAGACTCCATTTGCTGAAGTC Spar.....: TGGGCTTTTGGTTTGGCCACTATTTTAGGTCCAGAATGGAGAGCTAAGCACCCCCATTTGATGAGATGGTTCAACACCGTTGCTGCTTCCCCAATCGTGAAGACTCCATTTGCCGAATTC Smik.....: TGGGCTTTTGGTTTAGCTTCTATTCTAAGCCCAGAATGGAGATCCAAGTATCCTCATTTGATGAGATGGTTCAACACTGTTGCTGCTTCCCCAATTGTGAAGACTCCATTTGCCGAATTC Sbay.....: TGGGCTTTCGGTTTATCCAGTATTTTGGGCCCAGAATGGAGAGCCAAGCACCCCCAACTATTGAGATGGTTCAACACTATCATTGCTTCTCCAATCTTGAAGACTCAATTGGCTGAATTC consensus: ******** ***** * **** * * ** ********* * *** * ** ** * **************** * ****** ***** ********* *** ** *** ** 1560~1680: Scer.....: AAATTGGCTGAAAAGGCTCTAACCTACACTCCACCAAAGAAGCAAAAGGCTGAAAAGCCAAAGGCCGAAAAGTCAAAGGCTGAAAAGAAGAAGGACGAAGCTAAGCCAGCAGATGATGCT Spar.....: AAATTGGCTGATAAGGCTTTAACCTACACTCCACCAAAGAAGCAAAAGGCTGAAAAACCAAAGGCCGAAAAGCCAAAGGCTGAAAAGAAGAAGGAGGAAGCTAAGCCAGCTGATGAGGCT Smik.....: AAGTTGGCTGAAAAACCCTTGACCTATACTCCACCAAAGAAGCAAAAGGTTGAAAAGCCAAAGGCCGAAAAGCCAAAGGTTGAAAAAAAA---GAAGAAGCTAAGCCTGCTGATGA---T Sbay.....: AAGTTTGCAGAAAAGGCTTTGACTTACACTCCTCCAAAGAAGCAAAAAGCCGAAAAGTCTAAGGCCGAAAAGCCAAAGGCTGAAAAGAAGAAGGAAGAAGCCAAACCAGCTCAAGA---A consensus: ** ** ** ** ** * * ** ** ***** ************** * ***** * ************ ****** ****** ** ** ***** ** ** ** * ** 1680~1800: Scer.....: GCTCCAGCTAAAAAGCCAAAGCACCCATTGGAAGCTTTAGGAAAGTCCACATTTGTCTTGGATGACTGGAAGAGAAAGTACTCCAACGACGACACCAGACCAGTTGCTTTGCCATGGTTC Spar.....: GCTCCAGCTAAGAAGCCAAAGCACCCATTGGAAGCTTTAGGGAAGTCCACATTTGTCTTGGATGACTGGAAGAGAAAGTACTCCAACGACGACACTAGACCAGTTGCTTTGCCATGGTTC Smik.....: GCTCCAGTCAAGAAGCCAAAGCACCCATTGGAAGCTTTAGGTAAATCTACTTTTATCTTGGATGAATGGAAGAGAAATTACTCTAACTCCGATACTAGACCAGTTGCTTTGCCATGGTTC Sbay.....: CAACAAGCACCTAAGCCTAAGCATCCATTGGAAGCCTTGGGTAGATCCACTTTTGTCTTGGACGACTGGAAGAGAAAATACTCTAACGAAGATACCAGACCAGTTGCTTTGCCTTGGTTC consensus: * ** ***** ***** *********** ** ** * ** ** *** ******* ** *********** ***** *** ** ** ***************** ****** 1800~1920: Scer.....: TGGGAACACTACAACCCTGAAGAATACTCCATCTGGAAGGTTGGTTACAAATACAACGACGAACTTACCTTGACTTTCATGTCCAACAACTTGGTCGGTGGTTTTTTCAACAGATTGTCC Spar.....: TGGGAACACTACAACCCAGAAGAATACTCCATCTGGAAGGTCGGTTACAAATACAACGACGAATTAACCTTGACTTTCATGTCCAACAACTTGGTCGGTGGTTTCTTCAACAGACTGTCT Smik.....: TGGGAACATTACAACCCTGAAGAATACTCCATCTGGAAAGTTGGTTACAAATACAACGACGAATTGACTTTGACTTTCATGTCCAACAACTTAGTTGGTGGTTTCTTTAACAGATTGTCT Sbay.....: TGGGAACACTACAACCCAGAAGAATACTCCATTTGGAAGGTTGGTTACAAATACAACGATGAATTGACTTTGACCTTCATGTCTAACAACTTGGTCGCTGGTTTCTTCAACAGATTGTCA consensus: ******** ******** ************** ***** ** ***************** *** * ** ***** ******** ******** ** * ****** ** ****** **** Spar_spli: BBBBBBB 1920~2040: Scer.....: GCTTCTACTAAGTACATGTTCGGTTGTTTAGTTGTCTATGGTGAAAACAACAATAATGGTATTGTTGGTGCCGTTATGGTCAGAGGCCAAGATTTCGCTCCAGCCTTTGATGTCGCTCCA Spar.....: GCCTCTACCAAGTACATGTTCGGTTGTCTAGTTGTCTATGGTGAAAACAACAACAACGGTATTGTCGGTGCCGTCATGGTCAGAGGTCAAGATTTCGCTCCAGCTTTCGATGTCGCTCCA Smik.....: GCCTCCACCAAATACATGTTTGGTTGCTTAGTTGTTTACGGTGAAAACAACAACAACGGTATCGTCGGTGCCGTTATGGTCAGAGGCCAAGACTTTGCTCCAGCTTTTGATGTCGCTCCA Sbay.....: GCTTCTACCAAGTACATGTTCGGTTGTTTAGTCGTCTACGGTGAAAACAACAACAACGGTATTGTTGGTGCCGTCTTGGTCAGAGGCCAAGACTTCGCTCCAGCTTTCGATGTTGCTCCA consensus: ** ** ** ** ******** ***** **** ** ** ************** ** ***** ** ******** ********** ***** ** ******** ** ***** ****** 2040~2160: Scer.....: GACTGGGAATCTTACGAATACACCAAGTTGGACCCAACCAAGGAAGAAGACAAAGAATTTGTCAACAACATGTGGGCTTGGGATAAGCCTGTTGTTGTCAATGGCGAAGATAAGGAAATT Spar.....: GATTGGGAATCTTACGAGTACACTAAGTTGGACCCAACCAAGGAAGAAGACAAGGAATTCGTAAACAACATGTGGGCTTGGGATAAGCCTGTTGTTGTCGATGGGGAAGCTAAGGAAATT Smik.....: GATTGGGAATCTTACGAGTACACCAAGTTGGATCCCACCAAGGAAGAAGACAAGGAATTCGTCAACAACATGTGGGCTTGGGATAAGCCTGTTGTTGTCAATGGAGAATCTAAAGAAATT Sbay.....: GATTGGGAATCTTACGAATACTCTAAGTTGGACCCAACCAAAGAAGAAGACAAGGAATTTGTCAACAACATGTGGGCTTGGGATAAGCCAGTTGTTGTCAACGGTGAATCCAAGGAAATT consensus: ** ************** *** * ******** ** ***** *********** ***** ** ************************** ********* * ** *** ** ****** 2160~2280: Scer.....: GTTGACGGTAAGGTTTTGAAATAAtctcaataactctt-----cttccatattttcttcccaa-tatacataagagtcaaacaaaacgaattttcaaaagaaaaaagaaaaaaaccctga Spar.....: GTTGATGGTAAGGTTTTGAAATAAtttcaataactctttatttcctccatattttcttcccaaatatacataacagtcaaacgaaacgaattttca----------gaaaaaaatcctgg Smik.....: GTTGACGGTAAGGTTTTGAAATGAtttcaataattcttttatttccgcaatatttcttcttaaacatacataaaagtcaaacgaaacgaattttctg---------aataaaaatcctga Sbay.....: GCTGACGGTAAGGTTTTGAAATGAttttaataacttttt-acattcacattttttcttctaaaacatacatacaactcaaacgaaacaaattt--------------------------a consensus: * *** **************** ** * ***** * ** ** ******* ** ******* * ****** **** ***** 2280~2400: Scer.....: agtcta-cttcatgat--tac---cccata-cttacgcgtggtttaattctatgtaacgattaacgtccatgtaatcattatatatatatatattgtaataatctctctaattgagtatc Spar.....: agtcta-cttcatgatattata--cccata-cttacgcgtggtttaattttatgtaacgattaacgttcatataatcattatat------atattgtaataatctctc-aattgagtcta Smik.....: agtctaacttcatgataaatac--cccata-ctcacgcgtggtttaattctatataacgattaacgttcatgtaatcattatat------atactgtaataatctctc-aattgaatctc Sbay.....: agtcta-cttcataataatatatacccacagttcacacgtggtctaattctatgtaacgattaacgtccatgttatcattatat--------attgtaataatttctc-aattgaatcct consensus: ****** ****** ** **** * * ** ****** ***** *** ************* *** * ********** * ********* **** ****** * 2400~2520: Scer.....: acaatctgctgcggttactcta---acaatattttgcataaacttgattcttctcttcttatttcatgtttcagtggggcattttccattgtacttttgca--acaatagcgaaaaaa-- Spar.....: aca-tcctttgcgattaaccta---agaatattttgggtaatcttgattctcctccatctatttcatgttttagtgggacattttccattgtacttt-gca--acaatagcgaaaata-- Smik.....: gaattcttttgtgattactctat-aaaaatactttgcatactcttgaccgtcttctatttattctatgttctggtgtggcattttccattgtcctattgtgt-agagcaaccagaata-- Sbay.....: gcgttcctttgagatccctttaacaacatcagattgcatactctttgtttcctacaataggtctcattat---gcagaacatgtcctattgtataattctttgtttataacgaaaatatg consensus: ** ** * * ** * * * *** ** *** * * ** * * *** * * ***** * * * * ** * 2520~2640: Scer.....: --acaattttccgta-------aagagaagcgtcagtcataaacggtgtatgttacccgaactggaatgaattttatc-ttaagactggaaaacaatttaggatagaactgaagatagtg Spar.....: --accattttccgta-------aaaagaagcatcagtcataaacggcgcacgttacccgaactggaacgatttttatc-ttaagactggaaaacaatttaggatagaactgaagatagtg Smik.....: --gctattttcatct-------aaaagaagcatcagtcataaacggtatatgttacccgaaatggaaggatttttatcattaagactggaaaacaatttaggatagaactgaagatagtg Sbay.....: caactgtttttttttttaggccaaacgaagtatcagtcataagcagccc--gttacccgtactcgaagggattttatc---aagactggaaaacgatttagaatagaactcaagatagtg consensus: * **** ** **** ********** * * ******** * * *** * ******* ************* ****** ******** ********* Scer_spli: DDDDDD DDDDDD 2640~2760: Scer.....: caacacgtctggtgatatcatgtgctttcaa-gcaggatttgtcacagtgctttagaaacacaaacaaaggaggtatatagaagttgcagttgctagagtttgt-tttcttacctaattc Spar.....: caacacgtctggtgataatatgcgttttcaaagcaagatttgtcacggtgctttagaaacacaa-caaaggaggtatatagaagttgcagttgctagagtttgt-tttcgtacctaattc Smik.....: caacacgtctggtgataatcagacagtttgaaacaatttttgtgagagtgctttagaaaaacaa-caaaggaggtatatagaagttgcagttgctagagtttgt-tt-cttacttaattc Sbay.....: cagcacgtctggtgattattaagagttctcaagcaaaact-gtcacagcactc-aaaaagaaaaccaaaagaggtatatagaagttgcaggtgatagggttagtgtttcttacttacttc consensus: ** ************* * * ** * ** * * ** * *** * ** **** ******************** ** *** *** ** ** * *** ** *** 2760~2790: Scer.....: tagatcaattcttttttctgaaaaaaaaaa Spar.....: tagaccaattctttttttctgaaaaaaa-- Smik.....: tagatcaattcttttttttctgaaaaaaat Sbay.....: tagatcaattctttaaa------------- consensus: **** ********* { alias......: ['RPS27A'] chromosome.: 11 description: 40S ribosomal protein S27A (rp61) (YS20) end........: 159214 exons......: [(1, 3), (354, 599)] gene.......: RPS27A introns....: [(4, 353)] length.....: 599 name.......: YKL156W plength....: 199 start......: 158616 tdist......: 158616 type.......: ORF up.........: 1 } Scer: 4 donors and 1 branches Spar: 0 donors and 0 branches Smik: 2 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 449), ('Smik', 449)] ->[('Scer', 638), ('Smik', 638)] ->[('Scer', 916)] ->[('Scer', 1241)] ] [ ->[('Scer', 776), ('Smik', 776)] ] 0~120: Scer.....: cagagaccgtgatgtcgtcaacaagtatttgaaggaaaatggttactattaagaaaaaatctcttttctagccattttgcctttttatatagtcaagtatctat-atgtgacaaatactt Smik.....: -------------------------------------------------aaaaactgaaccttttcgaaatattttttatcttttataatagataagtatatatcattgaataaatactt consensus: ** * ** ** ** * **** ***** **** ****** *** ** * ******** 120~240: Scer.....: cttctaagcttggccttctgataggcttagcttgcagtggttgcaaacatacataaatcaacaaaaaagtacggcttaaaattttggtattcatttatttcaacccgtgcacactggaaa Smik.....: att-taagcttattctttatcttaatat-gcttgcaaaggttactactacaaatgaat-----gaaaagtatggcctcaggattaattcattattcgtttaaacccatgaaccc--ggaa consensus: ** ******* *** * * ******* **** * * * * ** *** ******* *** * * ** * * *** *** ***** ** ** * * ** 240~360: Scer.....: taaatctgtacataacagcatat-tttgtttttgaaaaaatttctgtgttcctc--cgatgtggg--aagaatt-ttaggatcggct-----aaatttcgtaaagtatcagtaacttggt Smik.....: taaatctgtacataacaccaaacatttattcccaaagatattgtgttgtttttcatcgaagcgggtgaggaattcttagggcccggttcttcaaattttgaaaagtaacaataatatgct consensus: ***************** ** * *** ** ** * *** **** ** *** * *** * ***** ***** * * * ****** * ****** ** *** ** * 360~480: Scer.....: atctctgtataagcggagtctaatttcgataacaa-gcaacttcatcgtaacaccttccaacaaagcaaagatagatatcccaaaA-TGGTATGTTAGTATCCAATAAATGCAGCGCAAC Smik.....: atctatgtataaactcaatagagtcttgataacaataaaactttcacatagtaacctctaa-aaagcaaatacagacattaaaaaaatggtatgtgaataa--aagaaattaaagagaaa consensus: **** ******* * * * * * * ******** ***** * ** * * ** ** ******** * *** ** **** ******** * ** ** **** * ** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >============================== 480~600: Scer.....: TGGACCAGTGAATAGAACAATACATATAGATAAGTCGCAAAAGAAAAGAATACATGTGGTGGAAAATTTTGCACCAAGAGAGGCAAGAACTA-TGAAGAAAGACTTTTGAAATATTTCAA Smik.....: gcaacaactgaccagagtcatatg-atggataaggta-acaagtgaagaatcgatgtgctcgaaaaattgccaccgaagaagatgaacagaagcgaATGAAGCATTTAAGGCTAGTCATT consensus: ** * *** *** *** ** ****** * *** ****** ***** * ***** ** **** * ** * * * *** *** *** ** * known....: ======================================================================================================================== 600~720: Scer.....: GCGGTTGCTACATATAGTGGATAAGATTCAGGATGGACGTATGAGCTTACAGTTCATTGTAGGGGAATATAAAATTCTGATGATGGCGAACTTC----ATTCCCAGCAACTCAAGCTATT Smik.....: GCTAGTTTGGGAGATGGCAAACAAAAGTTAAGACGGACGTATGAATTTACTATTATTAGAAAGGAAGCGCTAAATTTCGTTAATAGTACCTTTTCCAGATGGCGTGAAGTTACGTTTATT consensus: ** * * ** * * ** * * * ** ********** **** ** * * * ** * ***** * * ** * ** ** * * * * **** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: ======================================================================================================================== 720~840: Scer.....: GTTATTTT-TCTATTCTGCACC------GAGATGAGGAGAAAAA----AGGAAGTTTACTAACAG--TTAGATTTATTTCTTATTCGTCTACAACAGGTTTTAGTTCAAGATTTATTGCA Smik.....: CTTATTTTGTCCGTATCAGATCATCTAGGAGCAAAGGTCAAAAAGAATAAAATATTTACTAACAACATTCGGTTCATTCCTT-TTCATTTACAACAGGTTTTAGTTCAAGACTTATTGCA consensus: ******* ** * * * *** *** ***** * * ********** ** * ** *** *** *** * ********************** ******** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ===============================================================================================>= 840~960: Scer.....: CCCAACTGCAGCTTCTGAAGCAAGAAAGCACAAATTAAAGACATTAGTCCAAGGTCCAAGATCGTACTTCCTAGACGTTAAGTGCCCAGGTTGTTTGAACATCACTACAGTTTTCTCACA Smik.....: TCCAACCGCAGCCTCTGAGGCAAGAAAGCACAAATTAAAGACCCTGGTTCAGGGCCCAAGATCTTACTTCCTAGACGTTAAATGCCCAGGTTGTTTGAACATTACTACAGTGTTTTCTCA consensus: ***** ***** ***** *********************** * ** ** ** ******** ***************** ******************** ******** ** ** ** Scer_spli: DDDDDD 960~1080: Scer.....: CGCCCAAACTGCAGTTACCTGCGAATCCTGCTCAACAATTTTGTGCACCCCAACTGGTGGTAAGGCAAAGCTTTCTGAGGGTACATCTTTCAGAAGAAAGTAAtttcattactagacaga Smik.....: TGCTCAAACTGCAGTTACTTGCGAATCCTGCTCAACAGTCTTGTGCACTCCAACTGGTGGTAAGGCAAAGCTTTCTGAAGGTACATCTTTCAGAAGAAAGTAActtcgatatcagaaaga consensus: ** ************** ****************** * ******** ***************************** ************************ *** ** *** *** 1080~1200: Scer.....: tgaaacgaaatttacttcaaaagaagagcattaataaagtgattcaattatggaaccagcagggtaggttttatcatatataatatacactcagttgtcatctttattggcttttta--g Smik.....: ttacacgaattttacttcaaaagaagagcattgataaagtgattcatttatggaaccagcagggtaggttttatcatatataatatacgctcagttgtcatctttattggcttttttcta consensus: * * ***** ********************** ************* ***************************************** *************************** 1200~1308: Scer.....: aaacgctgcaacaaactgtactatatatatatcatattcacgtatgtagaatattaaagtattgaatatattaatattattactttatttccagttacttacaatttc Smik.....: aaacgctgcaacaaactgtactatatatat--catattcacttatgtacaataataaagtattgaatatatt-----tattgctttatttttaattgccaacattttt consensus: ****************************** ********* ****** **** ****************** **** ******** * ** * *** *** Scer_spli: DDDDDD { alias......: ['APE2', 'LAP1', 'YKL158W'] chromosome.: 11 description: Removal of intron fused YKL158W and YKL157W (Davis et al.(2000) NAR 28:1700-6). end........: 158183 exons......: [(1, 281), (665, 3191)] gene.......: APE2 introns....: [(282, 664)] length.....: 3191 name.......: YKL157W plength....: 1063 start......: 154993 tdist......: 154993 type.......: ORF up.........: 1 } Scer: 9 donors and 4 branches Spar: 0 donors and 0 branches Smik: 9 donors and 2 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 831), ('Smik', 831)] ->[('Scer', 973), ('Smik', 973)] ->[('Scer', 1831), ('Smik', 1831)] ->[('Scer', 1899), ('Smik', 1899)] ->[('Scer', 2260), ('Smik', 2260)] ->[('Scer', 261)] ->[('Scer', 685)] ->[('Scer', 2534)] ->[('Scer', 3096)] ->[('Smik', 475)] ->[('Smik', 548)] ->[('Smik', 2403)] ->[('Smik', 4195)] ] [ ->[('Scer', 1155), ('Smik', 1155)] ->[('Scer', 728)] ->[('Scer', 2350)] ->[('Scer', 2935)] ->[('Smik', 3001)] ] 0~120: Scer.....: ctgcagttctgtgttttatatatcggttggtttattgcttgatctttttggccctctttttttcatggaattactgtatt-----taaaaagaaaaccatactttatatagaagtcattg Smik.....: -agcacgtctgtgttctttatatcaatttctctcttattcgatattctctgccctcttttttt-atagagctattaggttcttccttgaaaagaaaccatatcttatatagaattcgttg consensus: *** ******** * ****** ** * * ** * *** ** * ************* ** ** ** * ** * *** ******** ********** ** *** 120~240: Scer.....: ggcagaa-gggtcttgtcaacgagccgcctaggaactacacctgacagcaacttgcggcaagatagtaagatagcataatt-caaagcctcttgaac---cttacagcgccttgccgcgg Smik.....: agcggaaagggtcttctgaatgggccgattagtaactacagctgaccgcaactagcggccaaatgacaaggtagtataatttcaaagcctcttgaatatacttacaactatgcgtcgcag consensus: ** *** ******* * ** * **** *** ******* ***** ****** ***** * ** *** *** ****** ************** ****** * * *** * 240~360: Scer.....: tttggtaaacttctaaactgtgtatgttacacgtgaagcgaggcttggaacacctaagaagagatccttttcatatttactatccatcaacactgcgccttttcgtgatgatgcatttga Smik.....: tt--actgagttgcaaatagtggatgttatccatgaaacgaggctggaaatacataataaga-acccttttcatatttactagcaatcaaaactgcgcctatttgtgatagtacagtaca consensus: ** * ** *** *** ****** * **** ******* * ** ** *** **** * ***************** * ***** ********* ** ***** * ** * * Scer_spli: DDDDDD 360~480: Scer.....: tagtatggcagatgtgctacggtacttcgatctaatgtgctcttagacagatatgct-aaataatttcaatctaattcgtccgcgttgtaaattaagaaatcatgtaaacgttatatcaa Smik.....: caatacagtatattcgttgcggtgctt-aatttagagcacacttgaactgatttggtgaaataatttcaatctaattcgtccgcgttgtaaattgagaaatcatataaacattgtgttaa consensus: * ** * * ** * * **** *** ** ** * * *** ** *** ** * ************************************ ********* ***** ** * * ** Smik_spli: DDDDD 480~600: Scer.....: gaaataacaatcgaaggatagttcaaaaaatctgacataaaaaggtacttaaaaacacaggttgcataatATGCCAATTGTTCGGTGGCTATTATTGAAAAGCGCAGTTAGAGGTTCTTC Smik.....: gtaatagcagtcaagcgataatttaagaaatatgacaaacagggatagctaagcatacagattggatagtATGCTAATTGTTCAGCGGCTCCCATTAAAGAGTGCAGCGAAAGGTACTTC consensus: * **** ** ** * **** ** ** **** ***** * * * ** *** * **** *** *** ***** ******** * **** *** ** ** **** * **** **** Smik_spli: D DDDDDD 600~720: Scer.....: TCTAATAGGCAAAGCTCACCCTTGTTTAAGGTCTATTGCTGCACACCCTAGGTATTTATCTAATGTGTACTCACCACCAGCAGGCGTCAGTAGATCACTGCGCATCAATGTAATGTGGAA Smik.....: TCTGATTAGCAAGCTGCACCCTTGTTTAAGATTTATTACCACAAGTTCAAAATATTTATATAATGCATCCTCATCACAAGTAGATGTCAACAGGTCACTGCGCATCAATGAAGCTTGGAA consensus: *** ** **** ************** * **** * ** * * ******* ***** * **** *** ** ** **** ** **************** * ***** Scer_spli: DDDDDD 720~840: Scer.....: GCAGAGTAAATTAACTCCCCCAAGATTTGTGAAGATCATGAATAGACGCCCTCTGTTCACAGAAACTAGTCACGCCTGTGCGAAGTGCCAAAAAACGTCACAATTACTAAAGTATGTTTA Smik.....: GCAGGATAAATTATCAAGTCTACAACATGTAAACATTGTTGGTAAACGTCGCCTGTTCACAGAAACTAGCCACGCCTGTGCGAAATGTCAAAAAACAGCACTATCACTAAAGTATGTTTA consensus: **** ******* * * * * *** ** ** * ** *** * ***************** ************** ** ******** *** ** *************** Scer_spli: BBBBBBB DDDDDD Smik_spli: DDDDDD known....: >======== 840~960: Scer.....: CACAAAAGCTTAACAAAGAAACAAGGAAAAGATATACATAATATAAATTACCACTGATTATTTTGAACATGAGACCGAAATACCAGGATGTATTACTAGCCTTGTTTACCATTCTTCAAC Smik.....: CACAAAAGCTTAA--AAAAGACAAGGAAAGAATATATACTCCATCAATTACCTTTGGTCATTT-GAACATGAAACTGAAATATCAGAGTATACTATTAGTATCATTTACCATTCTTCGAC consensus: ************* ** * ********* ***** * ** ******* ** * **** ******** ** ****** *** * ** ** *** * ************* ** known....: ======================================================================================================================== 960~1080: Scer.....: TGGTGATTACAAAGTGAGTTCTCAT-TCATTGTTACCCTCATATTCTTATCTTCTGCAGCAGGA-AAAAGGGATTTACCCAACTAATTGACTTTGATAGAATTGTGATTGCAATAGCTTA Smik.....: TGGTTGTTACAAAGTGAGTTTTCATATTCTTGTTACCCTCATGTTCTTATCTTTTGCAGCAGGGGAAAAGGGATTAACTCAACTGATCGGGTTC-ATACAGTCGCGATTGAAATAGCTTA consensus: **** ************** **** * ************* ********** ********* ********** ** ***** ** * ** *** * * * ***** ********* Scer_spli: DDDDDD Smik_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: Scer.....: GGTAATATTTCAGTTAGACTACGACATCCAGTTATTTTTTTCTATTTCTCTGCTCGTTACCGACCTTTGAGTTCTTACTAACTTACATTCTCTATTAATTGTACCCAAAAGTACGAAGGA Smik.....: GGTAATATTTCAATTGGATTACGATATTCTGTTAACCTTTT---TTTGCCTACTC--TGCCAACTTTTGAGTTTCTACTAACATATATTTTCCATCATTTGTACCTTAAAGTACAAAAAA consensus: ************ ** ** ***** ** * **** **** *** ** *** * ** ** ******** ******* ** *** ** ** * ******* ******* ** * Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ======================================================================================================================== 1200~1320: Scer.....: CAACTAAAATGACCAGTAAAACCCCAAATCGTGAAATTCTTCCTGATAATGTCGTTCCTTTACACTACGATTTAACCGTGGAACCTGATTTCAAAACATTCAAATTTGAAGGCTCAGTCA Smik.....: CAACCAGCATGACCAGTAACACCCCAAAACGTGAAATTCTTCCTGATAATGCCGTTCCTATACATTACGATTTAACGGTGGAACCTGATTTTAAAACATTCAAATTTGAAGGCTCAGTTA consensus: **** * *********** ******** ********************** ******* **** *********** ************** ************************** * known....: ==============>= 1320~1440: Scer.....: AAATTGAGCTAAAAATTAATAATCCTGCAATTGATACGGTAACATTGAACACCGTCGATACCGACATCCATTCTGCAAAAATCGGTGATGTCACATCTTCCGAGATTATCTCTGAAGAGG Smik.....: ACATTGAGCTAAAAATTAATAATCCTGCAATTGATACAGTGAAATTGAACGCCGTCGATATCGACATTCACTCTGCCAAAATTGGTGATGTCACAGCTTCAATGATCACCAACGAAGAGG consensus: * *********************************** ** * ******* ********* ****** ** ***** ***** ************ **** *** * * ******* 1440~1560: Scer.....: AGCAACAAGTCACCACATTTGCGTTTCCTAAAGGGACCATGTCTTCTTTCAAGGGTAATGCATTTTTGGATATAAAATTTACTGGTATTTTAAATGATAATATGGCTGGCTTTTACAGAG Smik.....: AACAACAAGTCACCAGCTTCAAGTTTCCCAAAGGGATTATGTCTTCTTTTAAGGGTAATGCAATTTTGAATATAAAGTTTACTGGTATTTTAAATGATAATATGGCAGGCTTCTATCGAG consensus: * ************* ** ****** ******* *********** ************ ***** ******* ***************************** ***** ** *** 1560~1680: Scer.....: CCAAATATGAGGACAAGTTAACAGGTGAGACAAAATACATGGCTACTACTCAGATGGAACCTACTGATGCTAGAAGGGCCTTCCCATGTTTTGATGAGCCTAACTTGAAAGCCTCTTTTG Smik.....: CAAAATATGAAGATAAGTTAACTGGTGAAACTAAATATATGGCTACTACTCAAATGGAACCTACTGATGCTAGAAGAGCTTTTCCATGTTTCGATGAGCCTAATTTGAAAGCTACTTTTG consensus: * ******** ** ******** ***** ** ***** ************** *********************** ** ** ******** *********** ******** ****** 1680~1800: Scer.....: CTATTACTTTAGTTTCAGACCCATCTTTGACACACCTATCCAATATGGACGTCAAGAACGAATACGTAAAGGATGGAAAAAAGGTCACTTTGTTCAATACGACCCCTAAAATGTCAACTT Smik.....: CTATCACTTTAGTTTCGGACCCATCTCTAACTCATCTATCTAACATGGATGTCAAAGAAGAATACGTAAAGAGCGGAAAAAAGTTCACTTTGTTCAATACAACCCCTAAGATGTCAACTT consensus: **** *********** ********* * ** ** ***** ** ***** ***** * ************ ********* **************** ******** ********** 1800~1920: Scer.....: ACCTTGTTGCTTTTATTGTTGCTGAATTGAAGTACGTTGAATCCAAGAACTTTCGTATTCCTGTCAGAGTTTACGCCACCCCAGGTAACGAAAAACATGGTCAGTTTGCCGCGGATTTGA Smik.....: ATCTCGTTGCTTTCATCGTTGCTGAATTAAAGTACGTTGAGTCTAAAAACTTTCGCATTCCTGTTAGAGTTTACGCTACTCCTGGTAATGAAAAACATGGTCAGTTTGCCGCTGACTTGA consensus: * ** ******** ** *********** *********** ** ** ******** ******** *********** ** ** ***** *********************** ** **** Scer_spli: DDDDDD DDDDDD Smik_spli: DDDDDD DDDDDD 1920~2040: Scer.....: CTGCCAAGACTTTGGCATTTTTTGAAAAAACTTTTGGCATCCAATATCCTCTACCTAAAATGGACAATGTTGCTGTTCACGAATTTTCTGCAGGAGCTATGGAAAATTGGGGGTTAGTCA Smik.....: CAGCCAAAACTTTGGCATTTTTTGAAAAATCTTTTGGCATTCAATATCCTTTGCCAAAAATGGACAATGTTGCTGTTCACGAATTTTCTGCAGGAGCTATGGAAAATTGGGGGTTAGTAA consensus: * ***** ********************* ********** ********* * ** ************************************************************** * 2040~2160: Scer.....: CTTATAGAGTGGTTGATCTACTACTAGACAAAGATAACTCTACATTAGATCGTATTCAAAGAGTGGCTGAGGTAGTTCAACATGAATTAGCTCACCAATGGTTTGGTAACTTAGTTACTA Smik.....: CATACAGAGTGGTTGATTTATTACTTGACAAAGACAATTCTACATTGGATCGTATCCAAAGGGTTGCTGAAGTAGTTCAACATGAATTGGCCCATCAGTGGTTCGGTAATCTGGTTACCA consensus: * ** ************ ** **** ******** ** ******** ******** ***** ** ***** ***************** ** ** ** ***** ***** * ***** * 2160~2280: Scer.....: TGGACTGGTGGGAAGGCTTATGGCTAAATGAAGGTTTTGCTACTTGGATGTCATGGTATTCATGTAATGAGTTTCAACCAGAATGGAAAGTTTGGGAACAGTATGTTACTGATACCTTAC Smik.....: TGGACTGGTGGGAAGGCTTATGGCTAAATGAAGGATTTGCCACTTGGATGTCGTGGTATTCATGTAATGAATTTCAACCAGAATGGAAAGTTTGGGAACAGTATGTTACTGATACCTTAC consensus: ********************************** ***** *********** ***************** ************************************************* Scer_spli: DDDDDD Smik_spli: DDDDDD 2280~2400: Scer.....: AACATGCATTAAGCCTTGACTCTTTAAGGTCCTCTCATCCGATCGAAGTACCTGTAAAAAAAGCTGACGAAATTAACCAAATCTTTGATGCCATCTCTTACTCAAAGGGTGCTTCTTTAT Smik.....: AACATGCTTTAGGCCTTGACTCTTTGAGGTCCTCTCACCCAATTGAGGTACCTGTAAAGAAAGCCGATGAAATCAATCAAATCTTTGATGCTATTTCTTACTCAAAGGGCGCTTCTTTAT consensus: ******* *** ************* *********** ** ** ** *********** ***** ** ***** ** ************** ** ************** ********** Scer_spli: BBBBBBB 2400~2520: Scer.....: TAAGGATGATTTCGAAATGGTTAGGTGAAGAAACTTTTATTAAAGGTGTATCCCAATACCTGAATAAATTTAAATACGGTAATGCGAAGACTGAAGACCTATGGGATGCTTTAGCGGACG Smik.....: TGCGTATGATTTCGAAATGGTTAGGTGAAGAAACTTTTATTAAAGGTGTGTCACAGTATCTGAATAAGTTTAAGTACGGTAACGCGAAGACCGAAGATCTATGGGATGCTTTAGCTAATG consensus: * * ******************************************** ** ** ** ******** ***** ******** ******** ***** ***************** * * Smik_spli: DDDDDD 2520~2640: Scer.....: CCTCCGGTAAAGACGTTCGTTCTGTGATGAACATCTGGACTAAAAAAGTTGGTTTCCCAGTCATTTCAGTTAGCGAAGATGGTAACGGTAAAATAACATTTCGCCAAAACCGTTACTTAA Smik.....: CCTCCGGTAAAGATGTTCGCTCTGTTATGAATATCTGGACTAAAAAAGTTGGTTTTCCTGTCATCTCGGTTAGTGAAGATGGTAATGGTAAGATAACTTTCCGCCAAAACCGTTACTTAA consensus: ************* ***** ***** ***** *********************** ** ***** ** ***** *********** ***** ***** ** ******************* Scer_spli: DDDDDD 2640~2760: Scer.....: GCACAGCTGATGTCAAGCCCGACGAGGACAAAACCATCTATCCTGTATTTTTGGCTTTGAAGACTAAAAATGGAGTTGACAGTTCCGTTGTATTGAGTGAAAGAAGCAAAACTATTGAAT Smik.....: GCACAGCCGACGTCAAAGACGACGAAGATAAGACCATTTATCCTGTATTTTTAGCATTGAAGACCAAAAATGGAGTAGACAGCTCTGTCGTGTTAAATGAAAGAACCAAAAGTATTGATT consensus: ******* ** ***** ****** ** ** ***** ************** ** ******** *********** ***** ** ** ** ** * ******** ***** ****** * 2760~2880: Scer.....: TAGAAGATCCTACCTTTTTCAAAGTTAACAGCGAACAATCCGGAATTTATATAACATCCTACACCGATGAAAGATGGGCAAAACTGGGTCAACAAGCTGACTTATTGTCTGTTGAGGACC Smik.....: TAGACGACCAAACTTTTTTTAAGGTTAATAGTGACCAGTCTGGTATCTACATTACATCTTACAGTGATGAAAGATGGGCAAAATTAGGGGAACAATCAGACTTGTTGTCTGTTGAAGATC consensus: **** ** * ** ***** ** ***** ** ** ** ** ** ** ** ** ***** **** ****************** * ** ***** * ***** *********** ** * 2880~3000: Scer.....: GTGTCGGTCTGGTTGCTGATGTCAAGACACTATCTGCTTCTGGCTACACTTCAACTACTAATTTTTTGAACTTAGTCTCCAAATGGAATAATGAAAAGTCATTTGTCGTCTGGGACCAAA Smik.....: GTGTAGGTCTGGTTGCTGACGTCAAAACATTATCTGCCTCCGGTTATACTTCGACTATTAATTTCATGAATTTGGTTTCCAAATGGAACAAGGAGAAATCATTTGTTGTTTGGGAACAAA consensus: **** ************** ***** *** ******* ** ** ** ***** **** ****** **** ** ** *********** ** ** ** ******** ** ***** **** Scer_spli: BBBBBBB 3000~3120: Scer.....: TAATCAACAGCATATCTTCAATGAAATCTACTTGGTTATTCGAACCAAAGGAAACCCAGGATGCGCTTGATAACTTCACGAAGCAACTAATAAGCGGTATGACACACCACTTGGGTTGGG Smik.....: TAATTAACAGCATATCTTCACTGAAATCTACTTGGTTGTTTGAACCAAAGGAAACTCAGAATGCACTTGATAATTTCACAAAACAACTAATAAGCGATATGACGCACCAATTGGGTTGGG consensus: **** *************** **************** ** ************** *** **** ******** ***** ** ************* ****** ***** ********** Scer_spli: DDDDDD Smik_spli: BBBBBBB 3120~3240: Scer.....: AATTCAAATCTTCTGATTCGTTCTCCACTCAACGTTTGAAAGTGACCATGTTTGGTGCTGCTTGTGCCGCAAGGGACGCAGACGTTGAAAAAGCTGCTCTAAAAATGTTTACTGATTATT Smik.....: AATTCAAATCCTCTGATTCATTTTCCACTCAACGTTTGAAAGTGACCATGTTTGGTGCTGCTTGTGCTGCAAGAGATACATACGTCGAAAAAGCTGCTCTAAGAATGTTTACTGATTATT consensus: ********** ******** ** ******************************************** ***** ** ** **** **************** ***************** 3240~3360: Scer.....: GCAGCGGTAATAAGGAAGCCATCCCAGCATTGATTAAACCAATTGTATTTAACACTGTGGCAAGAGTTGGTGGTGCAGAAAACTATGAAAAAGTTTACAAAATCTACTTAGATCCAATCT Smik.....: GTAATGGTAATAAGGATGCCATTCCTGCTTTAATTAAGCCAATTGTATTCAACACTGCGGCAAGAATTGGCGGTAGAGAAAACTACGAAAAAGTTTATAAAATTTACTTAGATCCTATTT consensus: * * *********** ***** ** ** ** ***** *********** ******* ******* **** *** ********* *********** ***** *********** ** * 3360~3480: Scer.....: CTAACGATGAAAAATTAGCCGCATTAAGATCTTTAGGCAGATTTAAAGAACCTAAATTATTAGAAAGAACCTTAGGATATTTGTTTGATGGCACTGTCTTAAACCAAGACATTTATATTC Smik.....: CTAACGATGAGAAATTGGCCGCATTGAGATCTTTAGGTAGGTTTAAAGAACCAGAACTATTAGAAAGAACCTTAGGCTATTTGTTCGATGGTACTATCTTGAATCAAGATATATATATAC consensus: ********** ***** ******** *********** ** *********** ** ******************* ******** ***** *** **** ** ***** ** ***** * 3480~3600: Scer.....: CAATGCAAGGAATGAGAGCTCATCAAGAAGGTGTAGAGGCTTTGTGGAATTGGGTTAAAAAGAACTGGGACGAACTCGTAAAGAGACTACCTCCTGGTCTTTCAATGCTAGGCTCCGTCG Smik.....: CAATGCAGGGCATGAGAGCCCACCAGGAGGGTGTCAAGGCATTATGGAGTTGGATTCAAAAGAACTGGGAAGAACTTGTAAAGAGATTACCTCCCGGTCTTTCAATGCTGGGCTCCGTCG consensus: ******* ** ******** ** ** ** ***** **** ** **** **** ** ************* ***** ********* ******* ************** ********** 3600~3720: Scer.....: TCACATTAGGTACCTCTGGCTTTACATCAATGCAAAAAATAGATGAGATTAAGAAATTCTTTGCCACTAAATCCACGAAAGGTTTCGATCAAAGTTTGGCTCAATCACTGGACACTATTA Smik.....: TTACATTAGGTACTTCTGGTTTTACATCTTTGCAAAAAATTGATGAGATAAAGAAGTTCTTCGTCACCAAGTCTACTAAAGGTTTCGATCAAAGCTTAGCTCAATCATTGGACACCATTA consensus: * *********** ***** ******** ********** ******** ***** ***** * *** ** ** ** ***************** ** ********* ******* **** 3720~3840: Scer.....: CTTCGAAAGCGCAGTGGGGTTAAcagagaccgtgatgtcgtcaacaagtatttgaaggaaaatggttactattaagaaaa---aatctcttttctagccattttgcctttttatatagtc Smik.....: CTTCGAAAGCGCAGTGGG-TCAATAGAGATCGTGATGTAATCAACAAGTACCTAAAAGATAACGGGTACTTCTAGaaaaactgaaccttttcgaaatattttttatcttttataatagat consensus: ****************** * ** ***** ******** ********** * ** ** ** ** **** ** **** ** ** ** * **** ***** **** 3840~3960: Scer.....: aagtatctat-atgtgacaaatacttcttctaagcttggccttctgataggcttagcttgcagtggttgcaaacatacataaatcaacaaaaaagtacggcttaaaattttggtattcat Smik.....: aagtatatatcattgaataaatacttatt-taagcttattctttatcttaatat-gcttgcaaaggttactactacaaatgaat-----gaaaagtatggcctcaggattaattcattat consensus: ****** *** ** * ******** ** ******* *** * * ******* **** * * * * ** *** ******* *** * * ** * * ** 3960~4080: Scer.....: ttatttcaacccgtgcacactggaaataaatctgtacataacagcatat-tttgtttttgaaaaaatttctgtgttcctc--cgatgtggg--aagaatt-ttaggatcggct-----aa Smik.....: tcgtttaaacccatgaaccc--ggaataaatctgtacataacaccaaacatttattcccaaagatattgtgttgtttttcatcgaagcgggtgaggaattcttagggcccggttcttcaa consensus: * *** ***** ** ** * * ******************* ** * *** ** ** * *** **** ** *** * *** * ***** ***** * * * ** 4080~4200: Scer.....: atttcgtaaagtatcagtaacttggtatctctgtataagcggagtctaatttcgataacaa-gcaacttcatcgtaacaccttccaacaaagcaaagatagatatcccaaa--------- Smik.....: attttgaaaagtaacaataatatgctatctatgtataaactcaatagagtcttgataacaataaaactttcacatagtaacctctaa-aaagcaaatacagacattaaaaaaatggtatg consensus: **** * ****** ** *** ** ***** ******* * * * * * * ******** ***** * ** * * ** ** ******** * *** ** *** Smik_spli: DDDDD 4200~4318: Smik.....: tgaataaaagaaattaaagagaaagcaacaactgaccagagtcatatgatggataaggtaacaagtgaagaatcgatgtgctcgaaaaattgccaccgaagaagatgaacagaagcga Smik_spli: D { alias......: ['RPL17A', 'RPL17'] chromosome.: 11 description: Ribosomal protein L17A (L20A) (YL17) end........: 110131 exons......: [(1, 309), (616, 861)] gene.......: RPL17A introns....: [(310, 615)] length.....: 861 name.......: YKL180W plength....: 287 start......: 109271 tdist......: 109271 type.......: ORF up.........: 1 } Scer: 5 donors and 5 branches Spar: 5 donors and 5 branches Smik: 0 donors and 0 branches Sbay: 6 donors and 4 branches INTRON SPLICING FOUND!! [ ->[('Scer', 990), ('Scer', 985), ('Spar', 985), ('Sbay', 990), ('Sbay', 985)] ->[('Scer', 1033), ('Spar', 1033), ('Sbay', 1033)] ->[('Scer', 1410), ('Spar', 1410), ('Sbay', 1410)] ->[('Sbay', 36)] ->[('Sbay', 1786)] ->[('Scer', 64)] ->[('Spar', 1854)] ->[('Spar', 1939)] ] [ ->[('Scer', 709), ('Spar', 709), ('Sbay', 709)] ->[('Scer', 747), ('Spar', 747), ('Sbay', 747)] ->[('Scer', 1344), ('Spar', 1344), ('Sbay', 1344)] ->[('Scer', 655), ('Spar', 655)] ->[('Scer', 828), ('Spar', 828)] ->[('Sbay', 1479)] ] 0~120: Scer.....: -acagaagagagtgtgcgcaatattttagttcttaaatatgaca-tagattatcaaaaaactttgtatgtttgccagatt--tcagtgaatctgcaagagtataaattataggaatttgg Spar.....: -acagaaaagagtttaagtaatattttatttcttaaatatgaca-tagactatcaaaca-ctttgtatatttgtcagatt--tcagcaaatctgcaaaagtataaattataggaatttgg Sbay.....: actaaacgaggctataaatagtattt-atctcttaagtatgacaacatatcatcaaaacattttgcatgattgccaaaaaaatgagcaaatctacaaaagt-taaaatataaaaatttgg consensus: * * ** * * * ***** * ****** ******* * * ****** **** ** *** ** * * ** ***** *** *** **** **** ******* Scer_spli: DDDDDD Sbay_spli: DDDDDD 120~240: Scer.....: gtgaattaa--accatttattatgtttta--tgtat--catggaa----------aaaaca-gaacctttatcaaatcatctatgaaa-ttttgaca-------ggttagccattttcct Spar.....: gtgaattga--actgtttaccatttttta--catat--cata-aa----------aggaca-aaatcctcatgaaatttttgatagta-ttataatg-------ggttgaatatttccct Sbay.....: ttgggctgatcatcattcattgcttttcaaacgtattacatggaattgtaatatcaagatacagattcccttggtatcgcgtttgaaaatcactacacccacttggtgaagctattttcg consensus: ** * * * ** * *** * *** *** ** * * * * * ** * * * * *** ** * 240~360: Scer.....: cattttattgctctgcaatagtaaattatatagatttatgcaatgctcta--ggttccggcggcttttcatttaatgtgaactcaag--actatt-at----------catccaaacaca Spar.....: t-tattattgctctgcaatcataaattatataaatctatgcgacgcttta--agtttcagtggcatttcattttattggaacttcag--actgtttat----------catccagaca-- Sbay.....: cattctattgatcctcaggtgataattagatatatatcagatattcaatactagtttcattgtggtttccaaaactcaaaacttctgcggctgttttctagttttgtgcatccagaca-- consensus: * ***** ** ** ***** *** ** * * * * ** *** * * **** * **** * ** ** ****** *** 360~480: Scer.....: ttacaacatccgtacatttagttggctccattttttgaaaaaatacttccgagtaagatgctgaaagtaatcaaatt------ccgtgaaaaaggaaccgatttggtaagggcggacctg Spar.....: ttcagacatccgtacatgtt-ttacttggctctctttagaaaatactttggaataagattctgatgg--agcatatt------ccgcgaaaaagagaccagttcgggaagggtggtcctg Sbay.....: tttgcacatccgtacattt--ttatatgacattgttctagaagtattctgaaatgaaaagcggacaggaaaggaaggatgcggccgaggaaaaatctccaacgaaaaaagagtgagccga consensus: ** ************ * ** * * ** ** ** * * * * * * ** * * * *** * **** ** *** * * ** 480~600: Scer.....: ccggaagaaaa-tcgctcccgcgtgtctactgga--ctttgcttctttgccaggcgggagaa-tgaag-cccaccggcctagctctatgggcgcagacagggatggtctcgatttgcttt Spar.....: cctaaagaaaaatcgctccggcgtgtctacggga--ttttcttcattcgccagccgggagag-cgaag-ggttctggcctagtcccatgggcgcagacggggatgatcccgatttgcttt Sbay.....: ggctaggcggaagcggtccagcaagtctacagggagcattctcctttagccaacgaggagaggtgaggtccctctagcctgattccatgggctcaggcggggatggttctagtttctttt consensus: * * * ** *** ** ****** ** ** ** **** ***** ** * * **** * ****** *** * ****** * *** *** 600~720: Scer.....: ctcactgcaatggaaatttctaacattagagcttcaacggctagcataaaacaactactaacgttttcagtgctatattcgaaagagcaaacaaagagtcctcaagaactactaatagat Spar.....: ctcactacattggaaatttctaacattagagctttaacggctagcataaaacaattattaacgtttttactgctagattttgaagagcaaacaaagagtcctcaagaactactaatagat Sbay.....: cttactgtaatggaaatttccaagattatagctgcaacgcctagcataaaacaatcatcaacggttttagtgttgaatcttaaagtgcaaagtaagagtccccaagaactactaatagat consensus: ** *** * ********** ** **** **** **** ************** * **** *** * ** * ** *** ***** ******** ****************** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB BBBBBBB Sbay_spli: BBBBBBB 720~840: Scer.....: taaaATGGCTAGATACGGTGCTACTTCCACTAACCCTGCTAAATCCGCTTCTGCTCGTGGTTCCTACTTGCGTGTTTCTTTCAAGAACACCAGAGAAACTGCTCAAGCTATTAACGGTTG Spar.....: taaaATGGCTAGATACGGTGCTACTTCCACTAACCCTGCTAAATCCGCTTCTGCTCGTGGTTCCTACTTGCGTGTTTCTTTCAAGAACACCAGAGAAACTGCTCAAGCTATTAACGGTTG Sbay.....: taaaATGGCTAGATACGGTGCTACCTCCACTAACCCTGCTAAATCCGCTTCTGCTCGTGGTTCCTACTTGCGTGTTTCTTTCAAGAACACCAGAGAAACTGCTCAAGCTATCAACGGTTG consensus: ************************ ************************************************************************************** ******** Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB BBBBBBB Sbay_spli: BBBBBBB 840~960: Scer.....: GGAATTGACCAAGGCTCAAAAATACTTGGAACAAGTTTTGGACCACCAAAGAGCTATTCCTTTCAGAAGATTTAACTCTTCCATCGGTAGAACTGCTCAAGGTAAGGAATTTGGTGTCAC Spar.....: GGAATTGACCAAGGCTCAAAAATACTTGGACCAAGTTTTGGACCATCAAAGAGCTATTCCTTTCAGAAGATTTAACTCTTCCATCGGTAGAACCGCTCAAGGTAAGGAATTCGGTGTCAC Sbay.....: GGAATTGACCAAGGCTCAAAAATACTTGGACCAAGTTTTGGACCACCAAAGAGCCATTCCTTTCAGAAGATTTAACTCTTCCATCGGTAGAACCGCTCAAGGTAAGGAATTCGGTGTCAC consensus: ****************************** ************** ******** ************************************** ***************** ******** 960~1080: Scer.....: CAAGGCTAGATGGCCAGCTAAGTCTGTTAAGTTCGTTCAAGGTTTGTTGCAAAACGCCGCTGCCAACGCTGAAGTATGTCAAG-AATATTATATGTTTAGTACCAGATGAAACAAGAATG Spar.....: CAAGGCTAGATGGCCAGCTAAGTCTGTTAAGTTTGTTCAAGGTTTGTTGCAAAACGCTGCTGCCAATGCTGAAGTATGTCAAGGAATATTATACGTTTAGtattagatgaaataaggatg Sbay.....: CAAGGCTAGATGGCCTGCTAAGTCTGTTAAGTTCGTTCAAGGTTTGTTGCAAAATGCTGCTGCCAACGCTGAAGTATGTTAGaaattattaaacacgtt-tgataaatgaaatgag-atg consensus: *************** ***************** ******************** ** ******** ************ * * ***** * * * * ****** ** *** Scer_spli: DDDDDDDDDDD DDDDDD Spar_spli: DDDDDD DDDDDD Sbay_spli: DDDDDDDDDDD DDDDDD known....: >============================================== 1080~1200: Scer.....: AGTTGAAATTCAAAAT-----GCGCGGAAAA-----TCCATTATGATCAAGGGAAAT-TGAATATGATAAA-TGAATT-ATTCAGAAAGTCACAATTACCAGATTGGAATGAACTGTCAA Spar.....: aattgggaaatagaat-----atacgaaaaaa----tccattttga-caagaggaat-cgaat-cgacaga-tccatttattgaaagaatcaaataacctaggttatgattaattgttaa Sbay.....: tattgagagccaaaatccatggtacagaaaaatatttccaatgtgaatgagagagatacgaggaacacatactgaataggataggatccaaagagttgccgacttgtggttaatcagagg consensus: *** * * *** * **** **** * *** ** * ** ** * * * * ** * * * * * ** * ** known....: ======================================================================================================================== 1200~1320: Scer.....: GCTGA-AAAGCAACTAAGGATTACCATTACGTGTTTATGATTTTGTTAGAAAAATATTG-AAAACTTGATATTTCTTTCCG-----CTAGTTTCATC--------TTTTTCAATTACTTA Spar.....: actgagaaagcaacgaagagttaccattacgtatttatgatttttgtcgaaaaacgatataaggcatgatgtatcttccct-----ctattttcatc--------ttttacgattactta Sbay.....: gagaagagaataattgat-actagtgttacattt---cggcttcctttgataaacactataagaca-gattttttttcccggatggtcatttacatcaatttacttttcatctttatcaa consensus: * * * ** * ** **** * * * ** * ** *** * ** * *** * * ** ** * ** **** *** *** * known....: ======================================================================================================================== 1320~1440: Scer.....: A-----CCGGATCAAAATTTTTTTTACTAACAACATAA-----------CTATTTTTATTACAGGCTAAAGGTTTGGATGCTACTAAATTGTACGTTTCTCATATCCAAGTTAACCAAGC Spar.....: ------tgggattgaa--tttttttactaacagtacaaa----------ttttttttattacaggctaaaggtttggatgctaccaaattgtacgtttctcatatccaagttaaccaagc Sbay.....: gaatcatgagcttgaatttttttttactaacaacatgaaaattttattattttttttataacaggctaaaggtttggatgctactaaattgtacgtttctcacatccaagttaaccaagc consensus: * * ** ************** * * * ******* ************************ ***************** ***************** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD Sbay_spli: BBBBBBB DDDDDD known....: ==============================================================>= 1440~1560: Scer.....: TCCAAAGCAAAGAAGAAGAACTTACAGAGCTCACGGTAGAATCAACAAGTACGAATCTTCTCCATCCCACATTGAATTAGTTGTCACTGAAAAGGAAGAAGCTGTCGCCAAGGCTGCTGA Spar.....: tccaaagcaaagaagaagaacttacagagctcacggtagaatcaacaagtacgaatcttctccatctcacattgaattagttgtcactgaaaaggaagaagctgtcgctaaggctgctga Sbay.....: tccaaagcaaagaagaagaactttcagagctcacggtagaattaacaagtacgaatcttctccatcccacattgaattagttgtcactgaaaaggaagaagctgttgccaaggccgctga consensus: *********************** ****************** *********************** ************************************** ** ***** ***** Sbay_spli: BBBBBBB 1560~1680: Scer.....: AAAGAAGGTCGTTAGATTGACTTCTAGACAAAGAGGTAGAATCGCCGCCCAAAAGCGTATTGCTGCTTAAatagaagatgaaaaataatgataatataattctctgttaattttaatctt Spar.....: aaagaaggtcgtcagattgacttctagacaaagaggtagaatcgccgcccaaaagcgtattactgcttaaatagaagatgaaaaataatgataatataattctctgttaattttaatctt Sbay.....: aaagaaggccgtcagattgacttctagacaaagaggtagaatcgccgcccaaaagcgtatcactgcttaaatagaagatgaaaaataatgataatataattctttgttaattttaatctt consensus: ******** *** *********************************************** ***************************************** **************** 1680~1800: Scer.....: ttatctatgtaattttatctccccgtcatatcacataactctaaaataagttttttattaa-tattattatattatatcggataatcctacgttcaaagt-attg-----------aaca Spar.....: ttatctatgtaattttatctccccgtcatatcacataactctaaattaagttttttattaaatattattatattatatcggatagctctgtgttcaaaattactg-----------aact Sbay.....: ttatctatgtaattttatctccccgtcatatcacataactctaaaataagttttttattaa---atattatactatatcggatagctacacgtttaagtt-attgcgtacgtaggagata consensus: ********************************************* *************** ******* *********** *** ** * * ** * Sbay_spli: DDDDDD 1800~1920: Scer.....: tagttttataatgaac--aaaggtataagaaatgctcat-a--aactgaaa--aaatcccgtagataagataataagaaatg-ctactgtctatatcaatatgtcaatcgttactcattc Spar.....: tgctttttaaatgagc--aaagatatgaagaaagctcatca--aacttaaa--agttcgtgtagatgagataattaaaaatg-ctactgtttatatcaatatattagtcgttatttgaag Sbay.....: tacctttcaaacccttctaaaaataatagaacgtctcaaaaggaaacaagactaaacctcttgaatgaagctgttcagaatatctactgtctatatcagtatattagtcattatttcata consensus: * *** ** *** ** * * **** * ** * * * * * ** * * *** ******* ******* *** * * ** *** * Spar_spli: DDDDDD 1920~1994: Scer.....: cctctctagtacggaacgtgtgcgttcttcataccgagctattagaattta------gtgaataaaggcat--- Spar.....: cctctccagtacggggtttgtatgttcctcgtgccgcgctgttggcattta------gtgcataaag-catcta Sbay.....: ctttt--agcacgaaatatatattctttccatgctgcgctgccggcatttgccacctatcattgaaggtatcta consensus: * * * ** *** * * * * * * * *** * **** * * *** ** Spar_spli: DDDDDD { alias......: ['CNB1', 'CRV1', 'YCN2'] chromosome.: 11 description: Type 2B protein phosphatase; regulatory B subunit of calcineurin end........: 83552 exons......: [(1, 52), (129, 604)] gene.......: CNB1 introns....: [(53, 128)] length.....: 604 name.......: YKL190W plength....: 201 start......: 82949 tdist......: 82949 type.......: ORF up.........: 1 } Scer: 5 donors and 4 branches Spar: 2 donors and 2 branches Smik: 3 donors and 3 branches Sbay: 5 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 391), ('Spar', 391), ('Smik', 391), ('Sbay', 391)] ->[('Scer', 755), ('Spar', 755), ('Smik', 755), ('Sbay', 755)] ->[('Sbay', 453)] ->[('Sbay', 1292)] ->[('Sbay', 1808)] ->[('Scer', 973)] ->[('Scer', 2172)] ->[('Scer', 2390)] ->[('Smik', 1386)] ] [ ->[('Scer', 444), ('Spar', 444), ('Smik', 443), ('Sbay', 443)] ->[('Scer', 87)] ->[('Scer', 431)] ->[('Scer', 1929)] ->[('Smik', 1716)] ->[('Smik', 1807)] ->[('Spar', 1256)] ] 0~120: Scer.....: ctcttataatttgtttccctcgacttctc--t----attt---aaatccaag-att--ttaactaataaactatttaataataaaacaattaa-ctctttatatggaag--ccttggaaa Spar.....: ----ttcttacggtttgtccctgattttccct----attt---aactctaa---gtttttaactaatacactatttaataacgcaacaatt-tactctgtatatggaaaccttttagaaa Smik.....: ----ctcttacggttcatctttgatttactatttaaacttcagaattctaacgaattttcaacttataaactatttaataataccacaatgatactctttctattaaaagcctttaagaa Sbay.....: ----tgcgtgctgctgacttctatttcccctt----attc---aacttcaac-ttcaactttctaacgaattccctc-taatagactatttat-taaacgctatgtata--cttttagaa consensus: * * ** * * * * ** * ** ** * * * * *** * * *** * ** ** Scer_spli: BBBBBBBB 120~240: Scer.....: ttagccgccaaaa---tgggatatacattc--cgtgcgaagtgaccgcgtggaaggccgggtatcatcttaaaaatcactagtttcttt--tttagcggaatgcaataaaggtgctttgt Spar.....: ttagccgccagaa---tggaatagaaatt---cgtgtaacgtgaccga-tcgaagtccgggtattattctgaaaataactagtttcttttttaccgga-a-tgcaataaaggtgctttgt Smik.....: t-aaccgccaagaatcttgaatattgagttcccgtgtggcatgattgaaccgacgtccgggtactctcccataaaacactagtttcttt--taccggaca-tgcaatgaaggccctttat Sbay.....: ttagccgccagatat-ttggaaatccatgt--cgtgaaacgtgactggcagaatgtccgggttacggtttatagctttctgaatttttt--taccggatactggaataaaggtacttt-t consensus: * * ****** * * * * * **** *** * * * ****** * ** ** *** * * * ** *** **** **** * 240~360: Scer.....: gctggtgtggtttacacggaacatctagta---gctaaaac------ttggtaactcaatggtgatcagaatccatagaagcatt-tttatttcttaaaATGGGTGCTGCTCCTTCCAAA Spar.....: actagtgtgttttacacaggacatctagtg---gctaacact-tagtaggaaaatccaatggtgatcagaattcataaaagtactttttttc-cttaatatgggtgctgctccttccaga Smik.....: actagtgagattt-tgcagagacttaagtg---gctag-----tagttatagatctcgatggtgatcagaatccatagaaatactttttttcacttaacatgggtgctgctccttccaaa Sbay.....: actagtgagctcttagtaggacatctagaaaaggctggcaccgatttttgaaatttcggtagtgatcaagatacacagaagtattctttttttcatattatgggtgctgctccttccaaa consensus: ** *** * * * * * ** *** * * * ******* ** ** * ** * * *** * * ** ******************* * 360~480: total....: ====== ======= Scer.....: ATTGTGGATGGTCTTTTAGAAGATACAAATTGTATGTACACTTCGGAGTGAGGAAAAGAAAGAAA-GGGGAAATTAACCGATTTTACTAACAC-TGA-CACTTTGAACAGTTGATAGAGA Spar.....: attgtggatggtcttttagaagatacaaattgtatgtatactttgaagtaaagtcaagaaagaaa-ggggaagtgaaccgattttactaacac-tga-cattttgaacagttgacagaga Smik.....: attgtcgatggtcttttagaggatacaaattgtatgtataggttgaagtaaaagaaaggaacaaatggagaagcggggcggatt-actaacat-c-a-ggctttgtacagttgatagaga Sbay.....: atcgtggatggccttttagaagacacaaattgtatgtat-ttttgaagtccaacagagagagaga-aagggga---actggttt-actaacatgtgagttttttgttcagtcgatagaga consensus: ** ** ***** ******** ** ************** * * *** ** * * * * * ** ******* * **** **** ** ***** Scer_spli: DDDDDD BBBBBBB BBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBBB Sbay_spli: DDDDDD BBBBBBBB DDDDDD known....: >============================================================================>= 480~600: Scer.....: TGAAATTGAAAGGTTAAGGAAGAGATTCATGAAATTAGATAGAGATAGCTCAGGGTCTATTGATAAAAATGAATTTATGAGCATTCCTGGCGTTTCGTCAAACCCTCTTGCTGGACGTAT Spar.....: tgagatagaaaggttaaggaagagattcATGAAACTGGACAGAGATAGCTCTGGTTCTATTGATAAAAATGAATTCATGAGCATTCCTGGCGTTTCGTCGAATCCTCTTGCCGGACGTAT Smik.....: tgaaattgaaaggttaaggaagaggtttATGAAGTTGGACAGGGATAGCTCTGGTTCTATTGATAAAAATGAGTTTATGAGCATTCCTGGTGTTTCATCAAATCCCCTTGCCGGGCGTAT Sbay.....: tgaaattgagaggttgaggaaaaggttcATGAAATTAGACAGAGACAGCTCTGGGTCTATTGATAAAAGCGAGTTCATGAGTATTCCAGGTGTTTCATCGAACCCCCTGGCAGGCCGTAT consensus: *** ** ** ***** ***** ** ** ***** * ** ** ** ***** ** ************* ** ** ***** ***** ** ***** ** ** ** ** ** ** ***** 600~720: Scer.....: AATGGAGGTTTTCGATGCTGATAATAGTGGGGACGTGGATTTTCAAGAGTTCATCACAGGATTATCCATTTTCAGTGGGCGTGGGTCCAAGGACGAAAAGTTAAGATTCGCCTTCAAAAT Spar.....: AATGGAGGTTTTCGATGCTGATAATAGTGGTGACGTGGATTTTCAAGAGTTTATCACAGGGTTATCTATTTTTAGTGGGCGAGGGTCCAAGGACGAAAAGTTAAGATTCGCCTTCAAAAT Smik.....: AATGGAGGTCTTCGATGCTGATAATAGTGGCGATGTTGATTTTCAGGAATTTATCACAGGACTATCCATCTTTAGTGGGCGTGGTTCTAAAGACGAAAAGTTAAGGTTTGCCTTTAAAAT Sbay.....: AATGGAAGTTTTCGATGCTGATAATAGCGGTGACGTGGACTTCCAGGAGTTCATTACCGGGCTATCCATCTTCAGTGGGCGTGGGTCCAAGGACGAAAAATTGAAGTTCGCCTTCAAAAT consensus: ****** ** ***************** ** ** ** ** ** ** ** ** ** ** ** **** ** ** ******** ** ** ** ******** ** * ** ***** ***** 720~840: total....: ====== Scer.....: CTACGACATTGACAAGGACGGTTTCATATCCAATGGTGAGTTGTTCATCGTGTTGAAGATTATGGTAGGTTCTAATCTGGACGATGAACAGCTGCAACAGATAGTAGATAGGACGATAGT Spar.....: CTACGACATCGACAAGGACGGTTTTATATCGAATGGTGAGTTGTTCATCGTGTTGAAGATTATGGTAGGTTCTAATCTGGACGATGAACAACTACAACAGATAGTAGATAGGACCATAGT Smik.....: TTACGACATTGATAAAGACGGCTTCATCTCGAATGGTGAGTTATTCATCGTTCTGAAGATTATGGTAGGTTCAAATCTGGATGATGAGCAGCTTCAGCAGATAGTAGATAGGACAATAAT Sbay.....: CTACGACATTGACAAAGACGGGTTCATATCGAATGGTGAGTTGTTCATTGTTTTGAAGATTATGGTGGGTTCTAATCTGGACGATGAACAGTTACAACAGATTGTAGACAGAACCATAAT consensus: ******** ** ** ***** ** ** ** *********** ***** ** ************* ***** ******** ***** ** * ** ***** ***** ** ** *** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 840~960: Scer.....: GGAAAACGATAGCGACGGCGACGGACGTTTAAGTTTCGAGGAGTTTAAGAATGCTATCGAAACCACAGAAGTGGCCAAGAGTCTGACATTGCAATACGATGTGTAAgactaggggacact Spar.....: GGAAAATGACAGTGATGGCGACGGACGCTTAAGTTTTGAAGAGTTCAAGAATGCTATCGAAACCACAGAAGTGGCCAAGAGTCTGACATTACAATATGATATCTGAgacaaggaggcact Smik.....: GGAAAATGACAGCGATGGCGATGGACGTTTAAGTTTTGAAGAATTCAAAAATGCTATCGAAACCACTGAAGTAGCCAAGAGTCTAACATTGCAATATGACGTTTGAgacaagagggcact Sbay.....: GGAGAATGACGGCGATGGCGACGGGCGTTTGAATTTTGAAGAGTTCAAAAACGCCATCGAAACCACGGAAGTGGCCAAGAGTCTGACATTACAGTACGAAGTTTGAgaa-aggaggcact consensus: *** ** ** * ** ***** ** ** ** * *** ** ** ** ** ** ** *********** ***** *********** ***** ** ** ** * * *** ** * **** 960~1080: Scer.....: tcattcatttatggtatgccaatatttttaagaaaagaagaataatacgcg-atattgttttttaaggaaggaacgcacactcgcc-cagttagagtgctgatgatatatacatatatat Spar.....: -tatttgtttgtggtataccaatatttgtaaagaaaaaagaataatgtagggatattggccttcaaggagggaatgcacgctcgcgccagttagagtgctggatatatacatttatgtct Smik.....: -cgctttactaagataaactagcgttagtgaaaaaaaataaaca-----cagatgttacctcttaatgaggaattgaacacttgctctagttacaatgttatatatatatatatatata- Sbay.....: ttacttttacagggtataccgaagattgtaaatacgaaa-----atatgt-----ctctttgaggggcaagatataaacactcgtctcagttaaggt--ttacgttttaggtatacatat consensus: * * ** * * * * * * * * * ** ** * ***** * * * ** ** * Scer_spli: DDDDDD 1080~1200: Scer.....: atgtatatgt------------------aacaaacaa-------------t------aagaaagcaatgat-----------acaacatagag-------------------------a- Spar.....: gtatatatgtctgtgatttaggtgaatattgagatagttgttgggattccattgttgataaaggctataatattaggtgtgcagaagataccagaagttcttat-cgattatattgg-aa Smik.....: gcaaacata---acaaaataagaaagcaataatacaa--gttaggg----attggaaaaaaaagtaacgat-tcgaatatg-atagaaaagtagcttgtcatataccactgtagaaataa Sbay.....: acatatata-------------------atgaaacga-------------a------agaaaaaaagcaat-----------aaagcaaag----------------------------- consensus: * ** * * * ** ** * * * * 1200~1320: Scer.....: -----------tgagagagagcatatatgtcagcgacgagatataccaagatggaagctgatc-----------tcatg-------taataactgc-ggggtgtactttgataatttttg Spar.....: tccacaggagggaatcgataattct-acataataat--attttttaatttattatttattaacaatgttgtcattctttatcctattacattatca-tccttgcgtttcagcttccacta Smik.....: gccgtttcagatatgggcgaattttgagataattgttggaatcaaaatcaactatcgtctatcaac--tctcagtcattatccgatcacgttatcacttcttgcatttcagcttcctcta Sbay.....: ------------gagtacggcttttccctttatcaatgaaac-------gacgagtagttgcc-----------tcat--------caaaatgtca-gtcttgtactctggc--ctttga consensus: * * * * ** * * * ** * Spar_spli: BBBBBBB Sbay_spli: DDDDDDD 1320~1440: Scer.....: ggatt--ccattgttattaatagc-----------tttgatatcagacatacagaatacc--------------------------------agagatt---------------ttcctc Spar.....: aactcgatgactgtttctcatcatttatgtcatcttttagcaccgtatatg-ataatatactagtaatatgaatactattcaatagaagatagttgatt-ctgttggaatgaaattctta Smik.....: actccgatgacagcttctcataacttatgtcatcttctaacaccgtatatg-ataatatactagtagtatgattactgatcatgttggaataagtgattactactatacacctattcgta Sbay.....: agagc--cga--gttaccaccg-------------tccagtaccggata---acaataaa--------------------------------actggtt---------------gtcgt- consensus: * * * * * * * * * **** * ** ** * Smik_spli: DDDDDD 1440~1560: Scer.....: aa-------------aaat----atggcaatgcacaaaggg--------ggatcaat---------------------agttatataaattaag-------------------------- Spar.....: ta--------tcatctatt-tagtagtatattatcatatg---cggtgtaagaggat---------------------ggcatgaagattgaga---aacagtcgtcca--atttaatg- Smik.....: taaattggattaagttattgcaactatacgtcttcgtataaattggagtagaaaaattctaattatagaatttactgcagtaatgagataaagatctattaattgatcagaacttattat Sbay.....: -a-------------tatt----cagtcaatcct---------------ggagaaat---------------------agc----------aag-------------------------- consensus: * * * * ** * * 1560~1680: Spar.....: ----gaagctgaagta----caag-------------------gattgat------------------aatgtaataggataatgaatg------acaac------atataaa--aagaa Smik.....: ataagaagatgagttatcaccaaattcttatcatcaacactctgatttatgtctgaaccttttggtttaatataaccaatcagcgtgtgttttatatacctctcttatatagattaagaa 1680~1800: Scer.....: -----a-ttatta--cttcttctttgttttatgtgttgttattcactatccc-------------------------------a-ctgcattatcaa----------------------t Spar.....: agaa-gataa-----aataataacactatgtagaactatcgattcccttttg---------------tggattcctatatc--ctcgaggagaact--------tctagtata------- Smik.....: ggaacgactattcttaattattacaacttactaaactactaattatcaacagatcaataaacataattaaatttttattccaacactgtgaaagctaatcttgctataatataaatcaac Sbay.....: -----c-ttatt-------------------------------------------------------------------------ctgcgatg--------------------------- consensus: * * Smik_spli: BBBBBBB 1800~1920: Scer.....: ccttacatatcagcttccgttaaacccgatgactatctctcaatcatca---------t----------------actatcttcttacaccgtat------atgat-----------aat Spar.....: ttctgtatac---ctaatattatagcctttagta-acaatggaatccc------------aacaattatctaatt--------------acccaa------ataat----tctcaccaac Smik.....: tatcatctactaactagtatttatggtactagtatattatcaaatacgcaaatgatgagaaatagtcatctaaattagtggaagctgaaacgcaaggattgataatgtaataggatcaat Sbay.....: ----atgtgtcagtttgctttagt----ataag-----ctcaaacaca------------------------------------------cgcag------acgaa-----------aat consensus: * * ** * * * * * * * ** Smik_spli: BBBBBBB Sbay_spli: DDDDDD 1920~2040: Scer.....: taccagcaatactaatgctaggagacagaccatc------------------------------------tttgattcctattccaataaagt---taaactg----------tgatatt Spar.....: -aatgtctacaca----acaaaaataagaaagc------aatgatataagattt----------------gccttcgaagtctacgacacaaa--ctaggaca-----gaagctggt-tc Smik.....: gaatatcaacatataaaacgatgataataatatttatagaattgtgtaaaattgtagattccctttcatggatttctaagtccccgagagaacttctagtatatctacgtacctaatatt Sbay.....: cattattatta---------------agagca----------------------------------------------------caaaagagt---taaaata----------t------ consensus: * * * * * * * * ** * Scer_spli: BBBBBBB 2040~2160: Scer.....: ggtttattggataagt------------------------------------------------------------------tcatatcctaaaacgtgttg---------acaacactt Spar.....: catgcatgagttaaac-tgtgat-------gttgtatta----ctagat-------aattttagaata--------------tctcaagatattgtcaagtc---------gtggtgggg Smik.....: tatgttttattaaaagatgcaatcccaacaattacatcagaatccacactcatctcaaatctagagtacaagtaaaactttgtgttgtaatagtattaattctgacttataatagttaat 2160~2280: Scer.....: cgggagtttccagtaagtaaaatttgta--tggagggttggccgagtggtctaaggcggcagacttaagatctgttggacggttgtccgcgcgagttcgaacctcgcatccttcagtaat Spar.....: c---acacacttgacag-aatttata-----ggagggttggccgagtggtctaaggcggcagacttaagatctgttggacggttgtccgcgcgagttcgaacctcgcatccttcagtatt Smik.....: ctttatttcctagacattaattcaaatacctggagggttggccgagtggtctaaggcggcagacttaagatctgttggacggttgtccgcgcgagttcgaacctcgcatccttcattatt Sbay.....: ----------caataattaat---------tggagggttggccgagtggtctaaggcggcagacttaagatctgttggacggttgtccgcgcgagttcgaacctcgcatccttcattatc consensus: * ** ************************************************************************************ ** Scer_spli: DDDDDD 2280~2400: Scer.....: tttttt---ttttaatttatttttgtgttgcaagcgttgatcctt-tccattatgcagccataagaggaggctggatatgaat-----tatttattaccaatataag-gagcatgtaccg Spar.....: ttgaat----------ttttttttgtgctgcaagcaattaatctatttcatgatggagcc--taaaaaggaggcttgacagtagt---tattttattgtcaatagacggagcatattcag Smik.....: t----------------------tttattggaactagctatattactttatgataaaccca-taaaagttattctatacaagaac---tgtcctatcgctcgtagatggagtatattcag Sbay.....: ttttttgatcttcgacttgttactccattttaaaatgtgccgggaatgcgaaaggcagcaagcacttgttgcatcaaacgaaaatccatatcgccttcccctattactgagtggtttccc consensus: * * * ** * * * * * * * * * * *** * * Scer_spli: DDDDDD 2400~2520: Scer.....: ttgattttgaagagccaa--ttgctccaaattttgga--ttttgtgttcga-aaaagggaagattgct-ccaaacgcaaataaggaggaaacccgctgattgcactcttggaaaaataaa Spar.....: ccggttttgatataccaa--ttgtcccacattttggattttt-gtgttcga-aaaagggaaggttgtt-ccaaacgcaaataaggaggaaacccgctgattacactcttggaaaaataaa Smik.....: cagagtttagtgtatcaaaattgtctagtattttgaattttttgtgttcaa-aaaagggacg-ttgtc-tcaaacgcaaatgacgaggaagtccgctgattactctcatg-aaaaataaa Sbay.....: ccactcttgga---tcat--ttttttttaattattcaccttttgtgtttgataaaaagtactagtattatcaaacgcaaataaggaggaaccgggctggttactacttgaaaaaaataaa consensus: ** ** ** *** * * *** ***** * **** * * * *********** * ****** **** ** * ********* 2520~2640: Scer.....: aa----taaaaagtgg---tctcagaattgtttcaaaagtggcactgacacaatatttacaggcgttgatagcttcttgttttaacaatacgatttaatctcggagtagttaagccaaag Spar.....: aaaat-aaaaaagtgg---tctcagaattgtttcaaaagtggcactgacacaatatttacaggcgttgatagcttattgttttaagagtacactttaatctcggagtagttaagc-aaat Smik.....: aaaa----agctatag---tctcaggattgtttcgaaagtggcactgacacaatatttacaggcgtcggtagcttattgtctaaggagtacagcctgaattaggagtagttaggccaaag Sbay.....: aaaaattaaaaaatagcagtctcagagttgtttcaaaagtggcactgacacaatatttagaggcgttgacaacttattgtt--aagagtacagttcgatctcggagtaaatagactaaag consensus: ** * * * ****** ******* ************************ ****** * * *** **** * * *** * * ****** ** * *** 2640~2710: Scer.....: aatacgtgttatccgtaagaggcttattgcacgtaatccccagtataaattatccgcaaatcgaagacaa Spar.....: aaaacctattatccgtgacaggcttattgcacgtaatcctcaatataaattatccacaaatcgaagacaa Smik.....: gaaacttcttcttcgtgacaagtttattgcactcaatcgtcaacataaaa-actcataaaaccaaggcaa Sbay.....: gaagcttctttttcattacttgcctaccacaccaaccgtcaaatataaga-gttcacaaaaagaagagaa consensus: * * * ** * * * * * ** *** * * **** * *** *** ** { alias......: ['RPS21A', 'RPS25'] chromosome.: 11 description: Ribosomal protein S21A (S26A) (YS25) end........: 551878 exons......: [(1, 24), (347, 586)] gene.......: RPS21A introns....: [(25, 346)] length.....: 586 name.......: YKR057W plength....: 195 start......: 551293 tdist......: 114567 type.......: ORF up.........: 1 } Scer: 3 donors and 4 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 822), ('Scer', 818)] ->[('Scer', 378)] ] [ ->[('Scer', 316)] ->[('Scer', 673)] ->[('Scer', 1282)] ->[('Scer', 1792)] ] 0~120: Scer.....: gaggatttgatttctttccacaaacgcaccacgttgagagtgtgtgtataatgaagagaatctaattgcacatataaaatatctatcactatgtatatctttctagagtaaatgtcttcc consensus: ************************************************************************************************************************ 120~240: Scer.....: tgtacttttaaatccgtacattttgaaaattgaaaatgtatctcagattcatttttcaattcgaaatgaacgaaaattacactaaaaaggtaacgtgtagagtgatattatgcacaacga consensus: ************************************************************************************************************************ 240~360: Scer.....: ttttttgaaaatttcatatacgttattctaatgtttagtagagagtttagcggaagatataaggtgatcaggcgtaaattaaccacatacaaaccatagaaacatcataccaaaATGGAA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 360~480: Scer.....: AACGATAAGGGCCAATTAGTATGTTCGAGAAATCTATAAGATTTTTTATATTTTAACGGATGAATGGAAAGTGCATGGCTGTTTAAATAAATGTAAGAAAGATATCATAATGCAAACAAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >===================================================================================================== 480~600: Scer.....: ACGTAGGCATCCGCAATGTATGGAAAACATACTTATGGTTACCGATAATAAGCAACTCCGAAGGTGCCATAGACCAGCTCTGAATGCAGCCTACAAAAGTTGAGCAATTTCTGACAAAAT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 600~720: Scer.....: TCTTCGATTACTTTCTTCACATGTATTAAATCATCACTCACCACCACCAACAATGTGTTTTTTAAACTAGCATAACTAACAAAGATTTGTTTTACATCAGGTCGAACTTTACGTTCCAAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ==================================================================================================>= 720~840: Scer.....: AAAATGTTCTGCTACCAACAGAATCATCAAGGCTGATGACCACGCATCTGTTCAAATCAACGTCGCTAAGGTTGATGAAGAAGGACGTGCTATCCCAGGTGAGTACGTTACCTACGCTTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDDDDDD 840~960: Scer.....: GTCCGGTTACGTTAGATCCAGAGGTGAATCTGATGATTCTTTGAACCGTTTGGCTCAAAACGATGGTTTGTTAAAGAACGTCTGGTCTTACTCACGTTAAgagaaaagaaaaagaggatt consensus: ************************************************************************************************************************ 960~1080: Scer.....: cgatttaagcttcatatcgttcagactaataggtaactgacgatttttctcttcattaccaacttttcaccatatgttctaattcgtcggattttcgatgaagcgttttaggtactctat consensus: ************************************************************************************************************************ 1080~1200: Scer.....: aggtatttaggttataataatatattgtatttttagacaaccggaacctgtttaatttgaagagtcattgtattcttggctattctgtttaaagttttgcagtgtggagtccctgagaaa consensus: ************************************************************************************************************************ 1200~1320: Scer.....: cccccgagcaaaaaaaagaccccaaaaccccgtaaatattactactctacttgtgtgttatacattttcaggagtcaaaacgtactaacaaccttaagcttgcttaaagaggtgctatat consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1320~1440: Scer.....: atgtcgataagaagcagagtataagggtgcctgaaaatgtttgttgcttgtaagctatgcctttactcttgacttacttcaatattgttggcaattcgtggtggagacttagtagggatt consensus: ************************************************************************************************************************ 1440~1560: Scer.....: ctattttcgcgtactagtgtgatgggaatgtataagaagctgctattgccacattgctctattccgcagattatttaccaggtgtgtttgcccttggtcaccaagtgaataaattgttag consensus: ************************************************************************************************************************ 1560~1680: Scer.....: aggaagcaggcaaaaaaaggcgacattgaaacatgccttattgtgacgacctctctatttaatggcactttaagcgagctagccaagaatattttacaatcaatatacaccaaaattgtg consensus: ************************************************************************************************************************ 1680~1800: Scer.....: ttggtagagcctttaaattgccaagaagaaagcatacagaagaatagtgagaatttagctcttttggaaagacctgaattatcctttgccttaatcaaagcaagactatgggaattaact consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 1800~1875: Scer.....: cagttcgaacaagttctttacttggattccgacactttacctctgaataaagaatttttaaagttgtttgacatt consensus: *************************************************************************** { alias......: ['RPL40B', 'CEP52B', 'UBI2'] chromosome.: 11 description: Ribosomal protein L40B end........: 618384 exons......: [(1, 8), (377, 755)] gene.......: RPL40B introns....: [(9, 376)] length.....: 755 name.......: YKR094C plength....: 251 start......: 617630 tdist......: 48061 type.......: ORF up.........: 0 } Scer: 6 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 51)] ->[('Scer', 327)] ->[('Scer', 960)] ->[('Scer', 1062)] ->[('Scer', 1991)] ->[('Scer', 2251)] ] [ ->[('Scer', 542)] ->[('Scer', 1345)] ] 0~120: Scer.....: tatcctaaaacgtggcgttactgactatttgtgtagcttcggcgagtatcagttaagtcctagtcagcacaagagatggaaaaatagacaggcagcaatatatctatcagtaaatattgt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: aaatggagcgtatctctccggcgccgtaagactcaatggaccacttttattgatatctctgtctgtattcaatttgccttccagttttcttttcccatatactcttgttgtcatgtcaag consensus: ************************************************************************************************************************ 240~360: Scer.....: aggaatgaaaggaaacaaagatgggaagagcgcgttaccccgcgcgtcgatcatcatattataaagaagacttaagttattatttttgtcagtaatattcaccctgatataatgttagta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 360~480: Scer.....: agaagtaaattttattattccatatagaatctatggaaggttgacccatccctcaattttttcttgagagtagaaaagctttctgcgatatgtggagagatataaaaaatgctggttcag consensus: ************************************************************************************************************************ 480~600: Scer.....: ttcaaatagagagagaaatttttaaattcttgcatagggatacttgaattcattgcttgagatattaacgcgttaggttgtgttcttcaatgatgggcaatgcaatttggcgttaagcgc consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 600~720: Scer.....: ctgagcaataaggtaacagcgaaatttatgacatattatttcgaaccttttacaaactagtagatttagtgatttattacctattggcattcatttgtgttctatatgtggatgaggata consensus: ************************************************************************************************************************ 720~840: Scer.....: gccgcctttcttctcatcggaggccatatcatctttcgacaatcctttttaaatactatttccatccgtgcctctaatagatttgtgtagttgtctgggtgcaatctttccatttttgct consensus: ************************************************************************************************************************ 840~960: Scer.....: gaacttttttttttttttcatgtttttcagattctgaagtaccgcaataggatatggcggataatccgccatatgatccgcctcatactagccattacccatctatcccaggcattatgg consensus: ************************************************************************************************************************ 960~1080: Scer.....: gtatgcaactcataatctcaaatacacaaataagagcaaccttatatatcactttttcccgttcagcaagaggtaaagccaccaaaggttcaaaATGCAAATGTATGTTACGGCGAATAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD known....: >================= 1080~1200: Scer.....: AGAATACTATGTTCGAAATAATATGAGGATTATACGATAGCAAAAAAGCCATAAACGAAAGACATAAATGGAAAATGATTGACAAGCTCACAATTTATTAAACAAGTAGCAATTGAGAAA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1200~1320: Scer.....: AACTATTACTCGCGGCAAGCTTCTGAGTTTACATTAAATCTGTAGAGCAAATTGAAAATGTCGCATATGTGCTGAAGGGTTTGTTTGTTCCATCTTATTTTGCATAACATAGTTATATTT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 1320~1440: Scer.....: ACTTGGTCGCATAAAAAATATTTTTTACTAACGTGAAGTTTCTTTCTTTATGATGTACGCACGCACGTCTGTGCTTACTCCATAAATGAACTTATTCCAATTTTGTACAGCTTCGTTAAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ============================================================================================================>= 1440~1560: Scer.....: ACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCT consensus: ************************************************************************************************************************ 1560~1680: Scer.....: GGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTATCATTGAACCATCTTTGAAAGCCTTGGCT consensus: ************************************************************************************************************************ 1680~1800: Scer.....: TCCAAATACAACTGTGACAAATCTGTTTGTCGTAAATGTTACGCCAGATTACCACCAAGAGCTACCAACTGTAGAAAGAGAAAGTGTGGTCACACCAACCAATTGCGTCCAAAGAAGAAG consensus: ************************************************************************************************************************ 1800~1920: Scer.....: TTGAAATAAtcgatttattacgatctccacaaatccaaagtttgtatacatcacgatttttttactacatatatatttccttttctattctatttgtaaatgggaggaaatcttaatatg consensus: ************************************************************************************************************************ 1920~2040: Scer.....: gacctctcttcacaaattgttctataatacaatatatatcaagatataataacaagtcatttgagataatggtatgcaaatacgcgaaataagagtaaacggatacagtgagcctgaaga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2040~2160: Scer.....: ggacaagctgcttccatgttgtagtgtttagatatatgagcttaaaatttagatttactgaatattatacaatagtaattatacataaagaaattccattttatctgttcgatagcaatg consensus: ************************************************************************************************************************ 2160~2269: Scer.....: gaagaggagagagttctgtgaaacaaataacagcagcacagaaaactcccgtcaacgtaatatggttaaaaaaaaaaaaaaaaaaaagacagtaagttaattaaacgca consensus: ************************************************************************************************************* Scer_spli: DDDDDD { alias......: ['COF1'] chromosome.: 12 description: Cofilin, actin binding and severing protein end........: 40413 exons......: [(1, 14), (194, 611)] gene.......: COF1 introns....: [(15, 193)] length.....: 611 name.......: YLL050C plength....: 203 start......: 39803 tdist......: 39803 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 0 donors and 0 branches Smik: 3 donors and 2 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 279), ('Smik', 279)] ->[('Smik', 119)] ->[('Smik', 849)] ] [ ->[('Scer', 250), ('Smik', 250)] ->[('Scer', 320), ('Smik', 320)] ] 0~120: Scer.....: caaacttcctttggtagaggctaatggccttggaagctcgagagaacattctataagttcatcaatc-----acttatac-tatatgc-----agtacctctaaattacctaatatccgg Smik.....: taaatctgtcgatgaaatactgagtgcccttgagatcgaggaaagaaaatctatacgcttgcagatcgcaatatctatctatatatacagcatagcacctcttattgccattaagtcggg consensus: *** * * * * ** ***** * * * * * * ****** * * *** * *** ***** * ** ****** * * * * * ** ** Smik_spli: D 120~240: Scer.....: gtaataagaacaatattcgggtgacgccgcccctgtttgatgacaaaattggaag-aaaaagaggaaacaagaaaagactggttagcaactacgtaaacttcagatttcaaaacata--c Smik.....: taagtaattattcaattcgggtgatgccgcccctgtttaatgacaaaattggaagaaaaaagaggaaataagaaaagaatggttagaatctaagtattctcaagagttcagaatacaact consensus: * *** * ********** ************* **************** ************ ********* ******* * *** *** ** *** **** ** * * Smik_spli: DDDDD 240~360: Scer.....: ataaacaaaaaactaacaaaagaagATGTCTAGATCTGGGTATGCTAAATTTCATTTGTACTCCTGTGTAAACTATCAATTACTAACTAATTGACATGATGCTGTTTTATCTCGCTCTCT Smik.....: gtaaacaaaaaactaacgaaaaaaaatgtctagatctgggtatgctaatttttaactacaggtttgtgagaactgccaattactaactgattgacctggttccgttttatctcgctgtct consensus: **************** *** ** *********************** *** * * * **** **** ************ ****** ** * * ************* *** Scer_spli: BBBBBBB DDDDDD BBBBBBB Smik_spli: BBBBBBB DDDDDD BBBBBBB known....: >================================================================================ 360~480: Scer.....: TATGTCCTTTCTTTCCTCCCTTTTTAACATGGAACTTTAAAAGGAATGTGGGGGAAAAAATTCATAAGAAGCCAGGAAAATGTGAAGTTTCTGTGTAGTGTTGCTGTTGCTGATGAATCC Smik.....: tttgccctttcttttctccctttttatcatggaactttaaattgagtatggagaagaaaagtcattagaagcgggcgaaatgctagatttATGTGTAGTGTTGCTGTTGCTGACGAATCC consensus: * ** ********* *********** ************** ** * *** * * **** **** ****** * ***** * *** ********************** ****** known....: ================================================================================================>= 480~600: Scer.....: CTTACCGCTTTCAATGACTTGAAATTGGGTAAAAAATACAAATTTATTTTATTCGGATTGAACGATGCTAAAACCGAAATCGTTGTCAAGGAAACCTCTACTGACCCATCTTACGATGCC Smik.....: CTTACTGCTTTCAATGACTTGAAATTGGGTAAGAAATATAAGTTTATTTTATTCGGGTTGAACGATGCTAAAACCGAGATTGTTGTTAAGGAAACATCTAACGATCCATCTTACGACGCC consensus: ***** ************************** ***** ** ************** ******************** ** ***** ******** **** ** *********** *** 600~720: Scer.....: TTCTTAGAGAAATTGCCAGAAAACGACTGTCTTTACGCCATTTACGATTTTGAATACGAAATTAATGGTAATGAAGGTAAGAGATCCAAGATTGTTTTCTTCACTTGGTCTCCAGACACT Smik.....: TTCTTAGAGAAATTGCCAGAAAACGACTGTCTATACGCCATTTACGATTTTGAGTACGAAATCAATGGTAATGAAGGCAAGAGATCTAAGATTGTTTTCTTTACCTGGTCTCCAGACACT consensus: ******************************** ******************** ******** ************** ******** ************** ** *************** 720~840: Scer.....: GCTCCAGTCAGATCTAAGATGGTCTATGCATCCTCCAAGGATGCCTTAAGAAGAGCCTTAAACGGTGTCTCTACCGATGTTCAAGGTACTGATTTTTCCGAAGTTTCTTACGATTCTGTT Smik.....: GCTCCTGTCAGATCCAAGATGGTTTACGCATCTTCTAAGGATGCCTTGAGAAGGGCCTTGAACGGTGTCTCCACCGATGTTCAAGGTACTGATTTCTCTGAAGTCTCTTACGAATCAGTT consensus: ***** ******** ******** ** ***** ** *********** ***** ***** *********** *********************** ** ***** ******** ** *** 840~960: Scer.....: TTGGAAAGAGTCAGCAGAGGCGCTGGTTCTCATTAAggtaaatgatttc---acaaatgacaacaatcttcaagaaaaatgaaaatgtatatctatatataaaatcgtcatatatataca Smik.....: TTGGAAAGAGTCAGTAGAGGTGCTGGTTCCCATTAAggcaaatgattttaaaaaaaatgaaaacaatcctcaaaaaaatgaaaaatgtacatctatatatagagtcatcgtatatataag consensus: ************** ***** ******** ******** ********* * ****** ******* **** **** ******** *********** * ** ** ******** Smik_spli: DDDDDD 960~1080: Scer.....: gaatacatgtatagaattattataattataattttctcttcgcaactctatctaaaacacaatactt---agatttaaggtcccgtacaccc-----------cggctagtgggcattgt Smik.....: gattacatgtatagaattattatagttataattttctttttgcaactctatctaaaaagtagtactttccaggttcaatgtcccgtgcacccttcccccaccgtagtcagctagcattg- consensus: ** ********************* ************ ** **************** * ***** ** ** ** ******* ***** * ** ****** 1080~1200: Scer.....: ttttgcacccatatttgtaattctaaattcagaacggaaatactggccatgtagatcaagaaaagatacaaggtcatcgaaccaggcagcaatgatttttctataatcttctaaagtgaa Smik.....: ttttgcacccatatttgaaattttaaattcaggatggaaatgttgtttatgtagatc-agaagaggcacaaaatcctcgaacaaagcagcaatgtcttttctgtgaccattcagattgaa consensus: ***************** **** ********* * ****** ** ********* **** ** **** ** ****** * ********* ****** * * * * * * **** 1200~1225: Scer.....: gcatgacgaccatagctcgttgaat Smik.....: ccatgacgactgtgactcacaaag- consensus: ********* * *** * { alias......: [] chromosome.: 12 description: Hypothetical ORF end........: 9836 exons......: [(1, 287), (387, 3717)] gene.......: introns....: [(288, 386)] length.....: 3717 name.......: YLL066C plength....: 1239 start......: 6120 tdist......: 6120 type.......: ORF up.........: 0 } Scer: 21 donors and 4 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1401), ('Scer', 1392)] ->[('Scer', 145)] ->[('Scer', 236)] ->[('Scer', 269)] ->[('Scer', 702)] ->[('Scer', 1132)] ->[('Scer', 1326)] ->[('Scer', 1497)] ->[('Scer', 1589)] ->[('Scer', 2424)] ->[('Scer', 2758)] ->[('Scer', 3533)] ->[('Scer', 4610)] ->[('Scer', 5123)] ->[('Scer', 6346)] ->[('Scer', 6566)] ->[('Scer', 6983)] ->[('Scer', 7170)] ->[('Scer', 7959)] ->[('Scer', 8293)] ] [ ->[('Scer', 2531)] ->[('Scer', 3562)] ->[('Scer', 4385)] ->[('Scer', 8066)] ] 0~120: Scer.....: ggagtgatgcctttacgaatgaaaatccatagacagtgaaaagtaatgaaaaaataaaataagaaactactttttttgatgatataaataccgttgattatataaatgtatattaatatt consensus: ************************************************************************************************************************ 120~240: Scer.....: atagacctatttgatcaatgacggtgttcgtgaagtatttcatgaatacgataaacataagaaagaaacttttacactattgtagaaaaagcgtggacggaaataaagctaacagagtat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDD 240~360: Scer.....: gcccaataaacaacaatgaaattggaagcgtatgacttcgcagcactttgtccttccataaaaatgagtcgctgcttcttttttcattttttggcgcgtcgcgtcgggccgtatagaata consensus: ************************************************************************************************************************ Scer_spli: DD DDDDDD 360~480: Scer.....: tgcgtcacttctaagaacaagattgcagatcagggcagtgcgagttacaagtcatggtaccagactctcatttagagaccctcatttttgacacttaaaatatcaaaatttctgggttgc consensus: ************************************************************************************************************************ 480~600: Scer.....: gatagtttttgtgtaactgtaactagaaataaagctgaggggttagtgttttatcaacaataagatagagggtggtaagatgaagtgagacaatatcgtaacgtccgttttagtatacgg consensus: ************************************************************************************************************************ 600~720: Scer.....: cgctgataagttatattaccgtagaattatttggcgtttcgttgactcctacaaaaacaacaaacctatcaccgtatcgtcttctttagatatagtctcttcgtatgagtagtgtcacat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 720~840: Scer.....: acaagattaaagatgcatcagttatccttttaggatattgcggttagcatatgggaatggaaataggatacaattttatcatagcgccggcatgagtttgagccactaccgtattgtttc consensus: ************************************************************************************************************************ 840~960: Scer.....: tcggtgaatatagagtgttacgacagtgaggtggcatattattctaatgtatggtctgtgaaagttagaaatattctgaaatggcatccgttcaagcaaatggtaatattaaggaacttt consensus: ************************************************************************************************************************ 960~1080: Scer.....: tacgttaatgacgttatggtagtgctcatacttcaagtcaatatgtttatttcgtaaagttgaaagataaataatttttatgtttaggtgattttggtggtgattttgtgggtatattga consensus: ************************************************************************************************************************ 1080~1200: Scer.....: aataagtgtgtataaattgagtggttagtatatggtgcaaaagtggtataacgtatgtattaagggcagttatacaatatttggggtcgccgaatgagatatagatattaaaatgtggat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1200~1320: Scer.....: aatgatggactttatgggtaaatggcacagggtataaaccgctgaggcaagtgccgtgcataatgatgcgagtgcatttggtactgatggtgagagatgggtgatggagtggaatgtgag consensus: ************************************************************************************************************************ 1320~1440: Scer.....: agtagggtaagtttgagagtggtatatactgtagcatccgtgtgcatatgccatatcagtatacaagtgaaggtgagtatggcatgtggtagtgggattagagtggtaggataagtatat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD DDDDDD DDDDDD 1440~1560: Scer.....: gtgtattatttacgatcatttgtagacgtttcaatatggtgggtgaacaacagtacagtgagtaggacatcgtcgatggtagggtaagcggtagtggagttggatatgggtaattggagg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1560~1680: Scer.....: gtaacggttatggtggacggtggttagtggtaagtagagagatggatggtggttgggagtggtacggttgaatgagacagggtaacgagtggagaggtagggtaatggagggtaggtttg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1680~1800: Scer.....: gaggcaggttcatcagggttggattaggggttgtgttgaggtactgtgtgggtgtgtgtgggtgtgggtgtggtgtgggtgtgtgggtgtgggtgtgtgggtgtggtgtgggtgtgggtg consensus: ************************************************************************************************************************ 1800~1920: Scer.....: tggtgtgtgggtgtggtgtgtgtgggtgtgtgtgtgtgggtgtgggtgtgggtgtgtgtgtgtgggtgtggtgtgtgggtgtggtgtatatatatgtcactgtattgcatgctggatggt consensus: ************************************************************************************************************************ 1920~2040: Scer.....: gttagacaaggccgtagggacatatagcatctaggaagtaaccttgtacgaaaataggcaatatttcctgtttaggcgattgtgacgcagattttagtccaacgatctagcgtcaaggaa consensus: ************************************************************************************************************************ 2040~2160: Scer.....: tttttttatagtgggacattgcaccaaggaagtaacttgatacgtcgtgggtgaatgggtctgttttcttattcggcagggtaatacatttttgggggaagtttgtctgtctgacgcgcc consensus: ************************************************************************************************************************ 2160~2280: Scer.....: atatgtaggtacgccaaaaagggctcctctacttcgaagcgcgaggtcgtatacctaataaggaaatgtaatttataactttctattatattggtcttttcgagagcggaagaagttgta consensus: ************************************************************************************************************************ 2280~2400: Scer.....: ggctaagcgcaggctaagcgtaggtccatatttaaagtatccaagagaatatccacgaagcggctgagcaacgaacagaatcctggttctcctcgactaagcagatagttaagatactgt consensus: ************************************************************************************************************************ 2400~2520: Scer.....: gcaccatggaaattgaaaacgaacgtacgtaccgactactttatttttgcaggccggaaatcaaggatgaatgagacatccttctgttttctatgttgggacagacagtcgcttatctta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 2520~2640: Scer.....: gtgagatttcttattaactgaattttctttgctgctgctggagatttgcacctgcatagcgcagattctgcttcttctcaatagagtagcttaattattacattcttagatgatgataag consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 2640~2760: Scer.....: acggaaactggacaatcttttgtttatattgatggatttcttgtcaaaaagcataacaatcaacatactattgttaatttcgaaacttacaaaaataaaatgaaagtttccgataggcgt consensus: ************************************************************************************************************************ Scer_spli: DD 2760~2880: Scer.....: aagtttgaaaaagcaaactttgacgagtttgagtcggctctaaataacaaaaacgacttggtacattgtccctcaataactttatttgaatcgatccccacggaagtgcggtcattctac consensus: ************************************************************************************************************************ Scer_spli: DDDD 2880~3000: Scer.....: gaagacgaaaagtctggcctaatcaaagtggtaaaattcagaactggtgcaatggataggaaaaggtcttttgaaaaaattgtcgtttccgtcatggtcgggaaaaatgtacaaaagttc consensus: ************************************************************************************************************************ 3000~3120: Scer.....: ctgacgtttgttgaagacgaaccagatttccagggcggaccaatcccttcaaagtatcttattcccaagaaaatcaacttgatggtctacacgttgtttcaagtgcatactttgaaattc consensus: ************************************************************************************************************************ 3120~3240: Scer.....: aatagaaaggattacgataccctttctcttttttacctcaacagaggatactataatgagttgagtttccgtgtcctggaacgttgtcacgaaatagcgagtgccaggccgaacgacagc consensus: ************************************************************************************************************************ 3240~3360: Scer.....: tctacgATGCGTACTTTCACTGACTTTGTTTCTGGCGCACCTATTGTAAGGAGTCTTCAGAAAAGCACCATAAGGAGATATGGGTACAATTTGGCACCCCACATGTTTTTGTTACTACAC consensus: ************************************************************************************************************************ 3360~3480: Scer.....: GTAGATGAGCTATCGATTTTTTCTGCATACCAAGCAAGTTTACCTGGCGAAAAGAAAGTCGACACAGAGCGGCTGAAGCGTGATCTATGCCCACGTAAACCCATTGAGATAAAGTACTTT consensus: ************************************************************************************************************************ 3480~3600: Scer.....: TCACAGATATGTAACGATATGATGAACAAAAAGGACCGATTGGGTGATGTTTTGCATGTGTGCTGCCCAAGTTGAGAAGAGATACTAACAAAATGACCGCGGCTCTCAAAAATAATTGAC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD BBBBBBB known....: >================================================================== 3600~3720: Scer.....: GAGCTTACGGTGATACGCTTACCGTTATCCAGAGCTACAGCGCAACGTATACGTCGACGATACAACAAGAACGGTTCATCGGAGCCTCGACTAAAGACGCTTGACGGACTCACTTCCGAG consensus: ************************************************************************************************************************ known....: ==============================>= 3720~3840: Scer.....: CGCTGGATTCAATGGTTAGGCCTTGAAAGCGACTACCATTGTTCATTCTCTAGTACTCGGAATGCGGAAGACGTAGTGGCAGGTGAGGCGGCGAGTTCAGATCATGATCAAAAAATTTCA consensus: ************************************************************************************************************************ 3840~3960: Scer.....: AGAGTAACGCGAAAAAGGCCCCGAGAGCCCAAGAGTACAAACGATATCCTCGTCGCAGGCCAGAAACTCTTTGGCAGCTCCTTTGAATTCAGGGACTTGCATCAGTTGCGCTTATGTCAT consensus: ************************************************************************************************************************ 3960~4080: Scer.....: GAAATATACATGGCAGACACACCCTCTGTGGCAGTACAGGCCCCACCGGGCTATGGTAAGACGGAGTTATTTCATCTCCCCTTGATAGCACTGGCGTCTAAGGGCGACGTGAAATATGTG consensus: ************************************************************************************************************************ 4080~4200: Scer.....: TCGTTTCTGTTTGTACCGTACACAGTGTTGCTTGCTAATTGCATGATCAGGTTGGGCCGATGCGGTTGCTTGAATGTGGCCCCTGTAAGAAACTTTATTGAAGAAGGTTGCGATGGCGTT consensus: ************************************************************************************************************************ 4200~4320: Scer.....: ACTGATTTATACGTGGGGATCTACGATGATCTTGCTAGCACTAATTTCACAGACAGGATAGCTGCGTGGGAGAATATTGTTGAGTGCACCTTTAGGACCAACAACGTAAAATTGGGTTAC consensus: ************************************************************************************************************************ 4320~4440: Scer.....: CTCATTGTAGATGAGTTTCACAACTTTGAAACGGAGGTCTACCGGCAGTCGCAATTTGGGGGCATAACTAACCTTGATTTTGACGCTTTTGAGAAAGCAATCTTTTTGAGCGGCACAGCA consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 4440~4560: Scer.....: CCTGAGGCTGTAGCTGATGCTGCGTTGCAGCGTATTGGGCTTACGGGACTGGCCAAGAAGTCGATGGACATCAACGAGCTCAAACGGTCGGAAGATCTCAGCAGAGGTCTATCCAGCTAT consensus: ************************************************************************************************************************ 4560~4680: Scer.....: CCAACACGGATGTTTAATCTAATCAAGGAGAAATCCGAGGTGCCTTTAGGGCATGTTCATAAAATTTGGAAGAAAGTGGAATCACAGCCCGAAGAAGCACTGAAGCTTCTTTTAGCCCTC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 4680~4800: Scer.....: TTTGAAATTGAACCAGAGTCGAAGGCCATTGTAGTTGCAAGCACAACCAACGAAGTGGAAGAATTGGCCTGCTCTTGGAGAAAGTATTTTAGGGTGGTATGGATACACGGGAAGCTGGGT consensus: ************************************************************************************************************************ 4800~4920: Scer.....: GCTGCAGAAAAGGTGTCTCGCACAAAGGAGTTTGTCACTGACGGTAGCATGCGAGTTCTCATCGGAACGAAATTAGTGACTGAAGGAATTGACATTAAGCAATTGATGATGGTGATCATG consensus: ************************************************************************************************************************ 4920~5040: Scer.....: CTTGATAATAGACTTAATATTATTGAGCTCATTCAAGGCGTAGGGAGACTAAGAGATGGGGGCCTCTGTTATCTATTATCTAGAAAAAACAGTTGGGCGGCAAGGAATCGTAAGGGTGAA consensus: ************************************************************************************************************************ 5040~5160: Scer.....: TTACCACCGATTAAGGAAGGCTGTATAACCGAACAGGTACGCGAGTTCTATGGACTTGAATCAAAGAAAGGAAAAAAGGGCCAGCATGTTGGATGCTGTGGCTCCAGGACAGACCTGTCT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 5160~5280: Scer.....: GCTGACACAGTGGAACTGATAGAAAGAATGGACAGATTGGCTGAAAAACAGGCGACAGCTTCCATGTCGATCGTTGCGTTACCGTCTAGCTTCCAGGAGAGCAATAGCAGTGACAGGTGC consensus: ************************************************************************************************************************ 5280~5400: Scer.....: AGAAAGTATTGCAGCAGTGATGAGGACAGCAACACGTGCATTCATGGTAGTGCTAATGCCAGTACCAATGCGACTACCAACTCCAGCACTAATGCTACTACCACTGCCAGCACCAACGTC consensus: ************************************************************************************************************************ 5400~5520: Scer.....: AGGACTAGTGCTACTACCACTGCCAGCATCAACGTCAGGACTAGTGCGACTACCACTGAAAGTACCAACTCCAGCACTAATGCTACTACCACTGCCAGCACCAACGTCAGGACTAGTGCT consensus: ************************************************************************************************************************ 5520~5640: Scer.....: ACTACCACTGCCAGCATCAACGTCAGGACTAGTGCGACTACCACTGAAAGTACCAACTCCAACACTAGTGCTACTACCACCGAAAGTACCGACTCCAACACTAGTGCTACTACCACCGAA consensus: ************************************************************************************************************************ 5640~5760: Scer.....: AGTACCGACTCCAACACTAGTGCTACTACCACTGCTAGCACCAACTCCAGCACTAATGCCACTACCACTGCTAGCACCAACTCCAGCACTAATGCCACTACCACTGAAAGTACCAACGCT consensus: ************************************************************************************************************************ 5760~5880: Scer.....: AGTGCCAAGGAGGACGCCAATAAAGATGGCAATGCTGAGGATAATAGATTCCATCCAGTCACCGACATTAACAAAGAGTCGTATAAGCGGAAAGGGAGTCAAATGGTTTTGCTAGAGAGA consensus: ************************************************************************************************************************ 5880~6000: Scer.....: AAGAAACTGAAAGCACAATTTCCCAATACTTCCGAGAATATGAATGTCTTACAGTTTCTTGGATTTCGGTCTGACGAAATTAAACATCTTTTCCTCTATGGTATTGACATATACTTCTGC consensus: ************************************************************************************************************************ 6000~6120: Scer.....: CCAGAGGGAGTATTCACACAATACGGATTATGCAAGGGCTGTCAAAAGATGTTCGGGCTCTGTGTCTGTTGGGCTGGCCAGAAAGTATCGTATCGGAGGATGGCTTGGGAAGCACTAGCT consensus: ************************************************************************************************************************ 6120~6240: Scer.....: GTGGAGAGAATGCTGCGAAATGACGAGGAATACAAAGAATACTTGGAAGACATCGAGCCATATCATGGGGACCCTGTAGGGTATTTGAAATTTTTTAGCGTAAAAAGGGGAGAGATCTAC consensus: ************************************************************************************************************************ 6240~6360: Scer.....: TCTCAGATACAGAGAAATTATGCTTGGTACCTGGCCATTACTAGAAGAAGAGAAACAATTAGTGTATTGGATTCGACAAGAGGCAAGCAAGGGAGCCAAGTTTTCCGCATGTCTGGAAGG consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 6360~6480: Scer.....: CAGATCAAAGAGTTGTATTATAAAGTATGGAGCAACTTGCGTGAATCGAAGACAGAGGTGCTGCAGTACTTTTTGAACTGGGACGAGAAAAAGTGCCGGGAAGAATGGGAGGCAAAAGAC consensus: ************************************************************************************************************************ 6480~6600: Scer.....: GATACGGTCTTTGTGGAAGCGCTCGAGAAAGTTGGAGTTTTTCAGCGTTTGCGTTCCATGACGAGCGCTGGACTGCAGGGTCCGCAGTACGTCAAGCTGCAGTTTAGCAGGCATCATCGA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 6600~6720: Scer.....: CAGTTGAGGAGCAGATATGAATTAAGTCTAGGAATGCACTTGCGAGATCAGCTTGCGCTGGGAGTTACCCCATCTAAAGTGCCGCATTGGACGGCATTCCTGTCGATGCTGATAGGGCTG consensus: ************************************************************************************************************************ 6720~6840: Scer.....: TTCTACAATAAAACATTTCGGCAGAAACTGGAATATCTTTTGGAGCAGATTTCGGAGGTGTGGTTGTTACCACATTGGGTTGATTTGGCAAACGTTGAAGTTCTCGCTGCAGATAACACG consensus: ************************************************************************************************************************ 6840~6960: Scer.....: AGGGTACCGCTGTACATGCTGATGGTAGCGGTTCACAAAGAGCTGGATAGCGATGATGTTCCAGACGGTAGATTTGATATAATATTACTATGTAGAGATTCGAGCAGAGAAGTTGGAGAG consensus: ************************************************************************************************************************ 6960~7080: Scer.....: TGAaggaaattgttgttacgaaagtcagtgattatgtattgtgtagtatagtatattgtaagaaatttttttttctagggaatatgcgttttgatgtagtagtatttcactgttttgatt consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 7080~7200: Scer.....: tagtgtttgttgcacggcagtagcgagagacaagtgggaaagagtaggataaaaagacaatctataaaaagtaaacataaaataaaggtagtaagtagcttttggttgaacatccgggta consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 7200~7320: Scer.....: agagacaacagggcttggaggagacgtacatgagggctacttagggctatgtaaaagtgttgtagggctaaagaagagggtttcattttcattttttttaatttcggtcagaaagccggg consensus: ************************************************************************************************************************ 7320~7440: Scer.....: taaggtgtgacagcgagagtaaaggtagatgtaagagagtgtgtgggtgtgtggtgtgtgtgggtgtgggtgtggtgtgggtgtggtgtgtgggtgtggtgtatatatatgtcactgtat consensus: ************************************************************************************************************************ 7440~7560: Scer.....: tgcatgctggatggtgttagacaaggccgtagggacatatagcatctaggaagtaaccttgtacgaaaataggcaatatttcctgtttaggcgattgtgacgcagattttagtccaacga consensus: ************************************************************************************************************************ 7560~7680: Scer.....: tctagcgtcaaggaatttttttatagtgggacattgcaccaaggaagtaacttgatacgtcgtgggtgaatgggtctgttttcttattcggcagggtaatacatttttgggggaagtttg consensus: ************************************************************************************************************************ 7680~7800: Scer.....: tctgtctgacgcgccatatgtaggtacgccaaaaagggctcctctacttcgaagcgcgaggtcgtatacctaataaggaaatgtaatttataactttctattatattggtcttttcgaga consensus: ************************************************************************************************************************ 7800~7920: Scer.....: gcggaagaagttgtaggctaagcgcaggctaagcgtaggtccatatttaaagtatccaagagaatatccacgaagcggctgagcaacgaacagaatcctggttctcctcgactaagcaga consensus: ************************************************************************************************************************ 7920~8040: Scer.....: tagttaagatactgtgcaccatggaaattgaaaacgaacgtacgtaccgactactttatttttgcaggccggaaatcaaggatgaatgagacatccttctgttttctatgttgggacaga consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 8040~8160: Scer.....: cagtcgcttatcttagtgagatttcttattaactgaattttctttgctgctgctggagatttgcacctgcatagcgcagattctgcttcttctcaatagagtagcttaattattacattc consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB 8160~8280: Scer.....: ttagatgatgataagacggaaactggacaatcttttgtttatattgatggatttcttgtcaaaaagcataacaatcaacatactattgttaatttcgaaacttacaaaaataaaatgaaa consensus: ************************************************************************************************************************ 8280~8400: Scer.....: gtttccgataggcgtaagtttgaaaaagcaaactttgacgagtttgagtcggctctaaataacaaaaacgacttggtacattgtccctcaataactttatttgaatcgatccccacggaa consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 8400~8520: Scer.....: gtgcggtcattctacgaagacgaaaagtctggcctaatcaaagtggtaaaattcagaactggtgcaatggataggaaaaggtcttttgaaaaaattgtcgtttccgtcatggtcgggaaa consensus: ************************************************************************************************************************ 8520~8640: Scer.....: aatgtacaaaagttcctgacgtttgttgaagacgaaccagatttccagggcggaccaatcccttcaaagtatcttattcccaagaaaatcaacttgatggtctacacgttgtttcaagtg consensus: ************************************************************************************************************************ 8640~8760: Scer.....: catactttgaaattcaatagaaaggattacgataccctttctcttttttacctcaacagaggatactataatgagttgagtttccgtgtcctggaacgttgtcacgaaatagcgagtgcc consensus: ************************************************************************************************************************ 8760~8781: Scer.....: aggccgaacgacagctctacg consensus: ********************* { alias......: ['RPS0B', 'NAB1B', 'YST2'] chromosome.: 12 description: Ribosomal protein S0B end........: 243350 exons......: [(1, 90), (450, 1118)] gene.......: RPS0B introns....: [(91, 449)] length.....: 1118 name.......: YLR048W plength....: 372 start......: 242233 tdist......: 242233 type.......: ORF up.........: 1 } Scer: 3 donors and 1 branches Spar: 3 donors and 1 branches Smik: 1 donors and 2 branches Sbay: 6 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 961), ('Spar', 961), ('Sbay', 961)] ->[('Scer', 718), ('Spar', 718)] ->[('Sbay', 117)] ->[('Sbay', 316)] ->[('Sbay', 380)] ->[('Sbay', 421)] ->[('Sbay', 2541)] ->[('Scer', 2342)] ->[('Smik', 1706)] ->[('Spar', 2276)] ] [ ->[('Scer', 1297), ('Spar', 1297), ('Smik', 1297), ('Sbay', 1291)] ->[('Sbay', 2491)] ->[('Smik', 323)] ] 0~120: Scer.....: gctgaaaataacaataaataaaatacagtaaactttttt-agcggaa----cttctattgtaattt-aacgatttaatctgaaga-----------gatgtagatgtaataaaactgtta Spar.....: gctgataatgataataaaaaaagtgcagtgaactttttt-aacggag----ttattaat-caattt-aatgatttgatttaaagaa----------gatacaagtgcagtaaaagtatta Smik.....: gccgaaagtgggaactaaaag--tgcagtaaacttttt--aatagaa----tatttatcctacctg--gtggtttaatccaaaaatgacaaaaaatgacgaaaatgcaataaaagtaata Sbay.....: gctgaaaacaataacaaagaa--cacagtaaacttttttcaatagaactttttattatcctatttttaatggccagatatgaaaagaat-------gacaaaaatgcagtggta-tagta consensus: ** ** * ** ** * **** ******** * ** ** * * * ** ** * ** * ** * * * * ** Sbay_spli: DDD 120~240: Scer.....: aagtggcaacgtgataa-----ttaaaagcttggcaaaaataagagatca-acactagctttttctttttccacctaaatttgaagggaaataaaaaaga---------aattgaggctg Spar.....: tgatggtaatatagaaa-----ttaaaagcttggcaaaaatgaaaataaa-aaactagctttttcct---ccacctaaatttgaagggaaatgaaaatga---------aattgaggctg Smik.....: taacggtaatatagtagaagtttaaaaagcttggctaaaataagaaacagtacacctgcttttctct---ctacctgactttgaaaggaaatgaaaatga---------aatcgagactg Sbay.....: tgatggtaataccgaaa-----tttaaagcttggcaaaataaaaacaatg-gcaccagctttttttt--tctacctaaattcaaacgcaaatgaaaacggtacacaaataatggaggctt consensus: ** ** * * ********** *** * * ** ****** * * **** * ** ** * **** **** * *** *** ** Sbay_spli: DDD 240~360: Scer.....: tacagagtgttaatcttccataacggataccaccaaacgtttttaccctaaacttaaatttt-attacttatttt-acatgcataatggctgccat--gcgtagttcatacatgttattt Spar.....: tacaaggtgttaatcttccataacggataacaccacacgttctttccctaaagttaaatttttattacctatttt-acatacatactagccactatttgcatagttgataagtgttgttt Smik.....: tacacggtgctaatcttccatgacggattacaccacacgttcctttcctaaagttaaacttt--tcgcttgttct-acatgactattaactactatttgtatactttaaacttgatgttt Sbay.....: cacggagtgctaatctcccatgacagataatatcacacgttccttccttaaacttaaaattttatcgcttttttttgcatgtccatcaactattacttgtacagtatattcctgttgttt consensus: ** *** ****** **** ** *** * ** ***** * * **** ***** *** * * * ** * *** * * * * * * * ** * *** Smik_spli: BBBBBBB Sbay_spli: DDDDDD 360~480: Scer.....: gcacccttttt-ctttttcaataacaaaaaagagcttgggcattacgttttcaacacttttaatatttccctt-tttacatccgtacatataaaatg-taaacccatgcattcatgacaa Spar.....: gcacccttttttctttttcaatagcagaaa-gggctttagcattgc-ttctcgacattcctatgattccatttgtttacatccgtacatacaaaaaaataaacccatgcatctgtctcaa Smik.....: gcaccctttttcctttttcaatggcagaaa-gggctttagtatt---ctcttacctttcctacgtcctctttattctgcatccgtacattcactaaa--aaacccatgc-tttattttat Sbay.....: gcacccttttc-tcttttcagtatgatgaa-aagct--agatttgtgttcct-acacccctg--------ttcgtttgcatccgtacacacaatactataaacccatacatatg-cacaa consensus: ********** ****** * * ** *** * ** * * * * * * ********** * * ******** * * * Sbay_spli: DDDDDD DDDDDDDDDDDDDD 480~600: Scer.....: ttttacctatttcttaaaggcctttgtcacttctt---tatggg-aatggcgctactttaa-ttttccgcctac-tttgaaaaatttaccaaggcgaaattga-gtgcgctaggcggaag Spar.....: gaatacctatttctcaaaaggttttattacttataa--tgtggacagtagcgctactttaaattttccgcctac-tttgaaaaattcaccgaggcaaagttga-gagggctaggtggatg Smik.....: tatttttcctttttttgaatattt-atcatgattt---ggtgggcaaaagtgctggcttaatttttcgggctaaatttgaaaaattcaaggaggaaaaattgagtaaggctaggctgatg Sbay.....: cttttttgagatc----attttttaattgcgttttaggggaggggggaagtcccgcttacattttttcgcttgg-tt-gaaaaattcact-aggc--agttgacgggcgctagactgagg consensus: * * * ** * * ** * * * * **** * * ** ******** * *** * **** ***** ** * 600~720: Scer.....: ttccagggcacggtcaccgaacctttgtgctgtttcgaacgagggtcccgctggaggttgacggacgcgggaggagctggaaagatggaatggaaggactgcaacactcagtaagaaggt Spar.....: ctccagcgtacagctaccgaaccttgggactgtttctagaggcaggtccgctggagg-----------------agctggaagagcgtagcggaaggatagcgacactcagtaacaaggt Smik.....: ctccggcgtacagctaccgaactttgcgactgcttctagagagaagtccgttggaaga--------gctggaggagctggaagggcgtagtgggaacacagcactactcagtaagaagtt Sbay.....: ctccagagtgaagccgctgtacgctgagtgagctcctgggaggagacgcattggatgt-----------------gctgggaaggtgtagtgggaaaatagcaacacctggtgagagggc consensus: *** * * * * * ** * * * * * **** * ***** * * * ** * * ** ** ** * * * Scer_spli: DD Spar_spli: DD 720~840: Scer.....: tcgtggtagggaacatcaccttctctagttcctgtaaaaataatatgatcaagtttgaatcctcgtattgaaaaatcgcgagttattaagtgtgtaattt-agaataccgaaatagcaca Spar.....: tcgtggcagggaacatcacgtactctagttcctgtaaaaataatatgatcatgtttgaaacctcgtattgaaaaatcgcgagtttttaagtgtgtaattttagaataccgaaatagcaca Smik.....: taatgg.................................................................................................................. Sbay.....: tcgtggtagggaacatcgcatactctaattcgtgtaaagaagatattatca-atttgaatctccatattgttaaatcgcgaattttaaagtgtgtgattttaggatagtgaaatagcaca consensus: * *** ********** * * ***** *** ****** * **** **** ****** * * ***** ********* ** * ******** **** ** *** *********** Scer_spli: DDDD Spar_spli: DDDD 840~960: Scer.....: agaagagataagataagatactgataggataATGTCTTTACCAGCTACTTTTGATTTGACTCCAGAGGATGCCCAACTTTTGTTGGCCGCTAACACCCATTTAGGTGCTAGAAACGTTCA Spar.....: agaagagataagataagatactgataggataATGTCTTTACCAGCTACTTTTGATTTGACTCCAGAGGATGCCCAACTTTTGTTGGCCGCTAACACCCACTTAGGTGCTAGAAACGTTCA Sbay.....: agaagagata-gataagaaactgataggataATGTCTTTACCAGCTACTTTTGATTTGACCCCAGAAGATGCCCAACTTTTGTTGGCCTCTAACGCCCACTTAGGTGCTAGAAACGTTCA consensus: ********** ******* ***************************************** ***** ********************* ***** **** ******************** 960~1080: Scer.....: AGTATGTACACATATCCCATACGATTATGTT-CTATAGATGATAATAGGTCTCGAAAAGAATA---TGTCCCCGATTTAATCATATTTGGAGGTCAGAGGACCAAAGGTAATTTCAGAGG Spar.....: AGTATGTACACATATCCCATACGAATACATTTCTATAGATGATAATAA-TCTCGAAAAGAATA---TGTCCCCTATTTGTTCATGATTTGAGCTCAGAAACCTAAAGATAATTTTAGAGG Sbay.....: AGTATGTAC-CAAATCCCATATGACTCTATATCCGTGGACAGTAATAAGTGTCGAAAAAAAAAAGGCGTTGCCAAGTTTATCATGTTTTGAAATCGCAGACTCAGATACGAACTTTGAAG consensus: ********* ** ******** ** * * * * ** ***** * ******* ** * ** ** * ** **** ** ** ** * * * * * ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD known....: >====================================================================================================================== 1080~1200: Scer.....: AATTTT-GAACACGCCGGGTTTAGAAGAGTTAGAATTTCACTTCTTAGTGAGGGTAAGGAGAAGAAACTCAATAAGAATATACATCCTCGACTGTGTCAAAGATTATGAACTCCGAT-GA Spar.....: AATTTAAGAACTTGCCGAATTTGGAAGAATTAGAAGCTTACTTTTTAATGAGGACAAAGAGACAAGACTCAACATGAATATACCTCCTCGAATGCGTTAGAAATTATGATCTCCAAA-GA Smik.....: ....................................................................................................aaatggtgaacttcaaaaga Sbay.....: GGTTTTCAGA-------AACATAGCCAGATCCCGAGTGAATTTCCAACTGATGTCTTGAAAGGAACATGCAG-ATTGATAAACTTCCTTGAGAACGTTTCGCAGAATTGAATACCAG-GT consensus: *** * * * * * * ** * *** * * * * ** * *** ** **** ** ** * * * * * * known....: ======================================================================================================================== 1200~1320: total....: ======= Scer.....: AACAGTAAAACGTC----AAAAAATTCCACGGGATATAATTCGGTACTTT-ATTGGATATGGAAGAAAACATTATATATGCACAAATGAAC-GCTCTTACTAAC-ATAATTTATCTTTC- Spar.....: AACGGTAATATCTCCAAAAAAGAAACTCACGGGATGTAATTCGATACTTT-ATTAGATATGGAAGGAAACATTATATATGCACAAATGAAC-GCTCTTACTAAC-ATGAATTATCTTTT- Smik.....: aacagcgatattgcc--aaaaaatattcacgggat---attcgatacttttattaggcatggaa----acattgcatatgcagaaatgaac-act-ttactaac-ttgattcatctttta Sbay.....: GACATTAATGCTGCC---ATAGAATTGCAC--GATAAAATTCAATATTTT-ATTACCTACGGATTTCCATTTAATGCTTTAATGATCAGTTTACTAACAATAATTATAATATTTTTTTT- consensus: ** * * * * * *** *** **** ** *** *** * *** * * * * * ** * *** * * * *** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 1320~1440: Scer.....: -CTCTCTTTTTTTAGGTCCACCAAGAACCATACGTTTTCAATGCTAGACCAGATGGTGTTCACGTTATCAATGTTGGTAAGACCTGGGAAAAGTTGGTTTTGGCTGCTAGAATTATTGCT Spar.....: -TTCTCTTTTTTTAGGTCCACCAAGAACCATACGTTTTCAATGCTAGACCAGATGGTGTTCACGTTATCAACGTTGGTAAGACCTGGGAAAAGTTGGTTTTGGCTGCTAGAATTATTGCT Smik.....: ctctcttttttttaggtccaccaagaaccatacgttttcaatgctagaccagacggtgttcacgttatcaacgttggtaagacctgggaaaagttggttttggccgccagaattattgcc Sbay.....: -TTTATTTTGTTTAGGTCCATCAAGAACCATACGTTTTCAATGCTAGACCAGACGGTGTTCACGTTATCAACGTTGGTAAGACCTGGGAAAAGTTGGTTTTGGCTGCTAGAATTATTGCT consensus: *** ********** ******************************** ***************** ******************************** ** *********** known....: =============>= 1440~1560: Scer.....: GCCATTCCAAACCCAGAAGATGTTGTTGCCATCTCTTCCAGAACCTACGGTCAAAGAGCTGTCTTGAAATTTGCTGCTCACACTGGTGCTACTCCAATCGCCGGTAGATTCACTCCAGGT Spar.....: GCCATTCCAAACCCAGAAGATGTTGTTGCCATCTCTTCCAGAACCTACGGTCAAAGAGCTGTCTTGAAGTTTGCTGCTCACACTGGTGCTACTCCAATCGCCGGTAGATTCACCCCAGGT Smik.....: gccattccaaacccagaagatgttgttgccatctcttccagaacctacggtcaaagagctgtcttgaaatttgctgctcacactggtgctactccaattgctggtagattcaccccaggt Sbay.....: GCCATTCCAAACCCAGAAGATGTTGTTGCCATCTCTTCCAGAACTTACGGTCAAAGAGCTGTCTTGAAGTTTGCTGCTCACACTGGTGCTACTCCAATTGCCGGTAGATTCACTCCAGGT consensus: ******************************************** *********************** ***************************** ** *********** ****** 1560~1680: Scer.....: TCTTTCACTAATTACATCACCCGTTCTTTCAAGGAACCAAGATTGGTTATTGTTACCGACCCAAGATTAGACGCTCAGGCCATTAAGGAAGCTTCTTACGTTAACATTCCAGTCATTGCT Spar.....: TCTTTCACTAATTACATCACCCGTTCTTTCAAGGAACCAAGATTAGTTATTGTTACCGACCCAAGATTAGATGCTCAAGCCATTAAGGAAGCTTCTTACGTTAACATTCCAGTCATTGCT Smik.....: tctttcactaattacatcacccgttctttcaaggaaccaagattggttattgttaccgacccaagattagatgcccaagctattaaggaagcttcctacgttaacatcccagtcattgct Sbay.....: TCTTTCACCAATTACATCACCCGTTCTTTCAAGGAACCAAGATTAGTTATTGTCACTGACCCAAGATTAGACGCTCAAGCCATCAAGGAAGCTTCCTACGTCAACATCCCAGTCATTGCT consensus: ******** *********************************** ******** ** ************** ** ** ** ** *********** ***** ***** ************ 1680~1800: Scer.....: TTGACTGATTTGGACTCCCCATCTGAATTTGTTGATGTCGCCATCCCATGTAACAACAGAGGTAAGCACTCCATCGGTTTAATCTGGTACTTGTTGGCTAGAGAAGTTTTGAGACTAAGA Spar.....: TTGACTGATTTGGACTCTCCATCCGAATTCGTTGATGTTGCCATCCCATGTAACAACAGAGGTAAGCACTCCATCGGTTTAATCTGGTACTTGTTGGCTAGAGAAGTTTTGAGACTAAGA Smik.....: ttgactgacttagactctccatctgagttcgttgatgttgccatcccatgtaacaacagaggtaagcactccattggtttaatctggtacttgttggctagagaagttttgagactaaga Sbay.....: TTGACTGATTTGGACTCCCCATCTGAATTCGTTGATGTTGCTATCCCATGTAACAACAGAGGTAAGCACTCCATCGGTTTAATCTGGTACTTATTGGCCAGAGAAGTCTTGAGACTAAGA consensus: ******** ** ***** ***** ** ** ******** ** ******************************** ***************** ***** ******** ************ Smik_spli: DDDDDD 1800~1920: Scer.....: GGTGCTTTGGTCGACAGAACTCAACCATGGTCCATCATGCCAGATTTGTACTTCTACAGAAACCCAGAAGAAGTTGAGCAAGTTGCTGAAGAAGCTGCTGCCGCTGAAGAAGGTGAAGAA Spar.....: GGTGCTTTGGTCGACAGAACTCAACCATGGTCCATCATGCCAGATTTATACTTCTACAGAAACCCAGAAGAAGTTGAGCAAGTTGCTGAAGAAGCTGCTGCTGCTGAAGAAGGTGAAGAA Smik.....: ggtgctttagtcgacagaactcaaccatggtctatcATGCCAGATTTATACTTCTACAGAAACCCAGAAGAAGTTGAGCAAGTTGCTGAAGAAGCTGCTGCTGCTGAAGAAGGTGAAGAA Sbay.....: GGTGCTTTGGTCGACAGAACTCAACCATGGTCTATCATGCCAGATTTATACTTCTACAGAAACCCAGAAGAGGTTGAACAAGTTGCTGAAGAAGCTGTTGC---TGAAGAAGGTGAAGAA consensus: ******** *********************** ************** *********************** ***** ******************* *** **************** 1920~2040: Scer.....: GAAGAAGTTAAGGAAGAAGTCACTGAAGGTCAAGCTGAAGCTACTGAATGGGCTGAAGAAAATGCAGACAACGTTGAATGGTAAtcattt-gaaaaccttgcaatgtgtgtgaatattgt Spar.....: GAAGAAGTTAAGGAAGAAGTCACTGAAGGTCAAGCTGAAGCTACTGAATGGGCTGAAGAAAATGCAGACAACGTTGAATGGTAAtcattt-gaaaaccttgcaatgtgtgtgaatattgt Smik.....: GAAGAAGTCAAAGAAGAAGTCACTGAAGGTCAAGCTGAAGCTACTGAATGGGCTGAAGAAAATGCAGACAATGTTGAATGGTAAtcattt-gaaaaccttgcagtgtgtgtgaatattgt Sbay.....: GAAGAAGCTAAGGAAGAAGTCACTGAAGGTCAAGCTGAAGCTACTGAATGGGCCGAAGAAAATGCAGACAACGTTGAATGGTAAtcattttgaaaaccttgcaatgtgtgtgaatattgt consensus: ******* ** ***************************************** ***************** ****************** ************ **************** 2040~2160: Scer.....: aaggaattgagaaagagagataaaaaaagagacagaagtatcacttccttttctaatttttctttttcatt--ttttttttaaattcatctatcgtttatctttatctcatatatattt- Spar.....: aaggaattgagaaggagagtttaaaaa-gagataggagtatcactt----ttccaaattttctttttcatt--ttttt--taaattcatctatcgtttatctttatctcatatatatttt Smik.....: aaggaattgtgaaggaga----aagaaagagataggagcatcactcc-tttttcagttttactttttcatt--ttttt--taaattcatctatcgtttatctttatctcatatatatttt Sbay.....: aaggaattgagaatgaaaggaaaaaaa-aagatgggagtcccgcttc-tttcctgtttttccttcttttttcattttttttaaattcatctatcgtttatctttatctcatatatatttt consensus: ********* *** ** * ** ** *** * ** * ** * *** *** ** ** ***** *************************************** 2160~2280: Scer.....: -gcttctctct--gaagcgtcatcatctatctgtatttttaatgcaatcatagtataaaaatttttaaccaaattcaaaaattataatattttaaaagttt-atgcttttgtccttt--- Spar.....: -gcttctctct--gaagcgtcatcatctatctgtatttttaatgcaatcatagtataaaaatttttaaccaaattcaaaaattataatattttacaagttttatgcttttgttcttg--- Smik.....: -gcttctctct--gaagcgtcatcatctatctgtatttttaatgcaaccatagtataaaaaattttaaccaaattcaaaaattgtaacattt-acaagtttcatgcttctgtacttg--- Sbay.....: tgcttctctctttgaagcgtcatcatctatctgtatttttaatgcaatcatagtataaaaatttttaaccaaattcaaaaattataatatttt-caagttttatattttctcctttgccc consensus: ********** ********************************** ************* ********************* *** **** ****** ** ** ** Spar_spli: DDDD 2280~2400: Scer.....: ----------tatattcaa---gtcatttggccattattacgct----tttttttttattaggtaagtggtttcaataattaaa---ttctttagcgggaaggctga-ctatctatagta Spar.....: ----------tatgttcag---gtaacttggccactattgcgtt----cttttgt-----aggt--gtggttgcaatagttgaa---ctatctgg-gacaagatgta-cattttacaata Smik.....: ----------tatttttcaa--gtagttttaccactagaacgtt---tcttatttattg-aagtccgcgctcttcccccatgg----ttcgccgacctaaatatttg-ttatttgctttg Sbay.....: ctcttctatatatgttcaaaccgtaggtcacatattattacgctgactctaatgtgttgttgccttgtttttactgtaggtgtagctttttttagtgaagctatttaacactcaataata consensus: *** ** ** * * ** ** * * * * * * * * * * Scer_spli: DDDDDD Spar_spli: DDDDDDDDDDDDDDD 2400~2520: Scer.....: ---------------ttgaagata----agttaaattaatgtttagttctgat--------------a---tttcattttt--------------------------------------- Spar.....: ---------------ctaaaagtactaaaataaaaataatatttagttctgaacagcagccgcagaga---tttaatttttcttttgtttacctcctgcttagctatgatgtatagaata Smik.....: ttatttatttatactcttccgatataaaacaccttttgtcctttaactcattac.................................................................. Sbay.....: aatcacatttcttaattgttggcatactctctaaattaatatctagttaagactgtccggtatagaaaaacttaaaatgttttttcataattattaaccatttttattttgatctcatta consensus: * * * * ** * * ** * * ** Sbay_spli: BBBBBBB 2520~2640: Scer.....: ---------attattaattaaatttgcactattcgccatgacgggttcacccgagtatttattttgctttcg-ttatacatatatatata----tatatattc-ttccaggagaaatacc Spar.....: tttcatttgattattgattaaattcgc-ccgttagccatggtacgctcacctgaatatttattta--tttcg-ttatacatatatatata----tatatattc-ttccagtaaaactacc Sbay.....: tggccgttatttgattatgtagtatgttaaatgttcttttatttattgattaaagtgtgtatttcccgcccggctatactggcttgaataattttttttatttattttttgtaaactgtc consensus: ** * ** * * * * * * * * * * * ***** ** ***** * *** * * **** ** ** * * Sbay_spli: DDDDDD 2640~2663: Scer.....: tgccttctctcttaccccttgc- Spar.....: tctcttcccttatctttttgg-- Sbay.....: ccttttcccctctcccttgctct consensus: *** * * { alias......: ['RPL22A'] chromosome.: 12 description: Ribosomal protein L22A (L1c) (rp4) (YL31) end........: 263949 exons......: [(1, 12), (402, 755)] gene.......: RPL22A introns....: [(13, 401)] length.....: 755 name.......: YLR061W plength....: 251 start......: 263195 tdist......: 263195 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 439)] ->[('Scer', 1033)] ] [ ->[('Scer', 767)] ->[('Scer', 794)] ] 0~120: Scer.....: tgtaatgttctaacaaaaatttttactgatttataaaacttatatagatagatagacacatatatatatctatatatagaaacacaactaaagtttaccatgttttatataatattacta consensus: ************************************************************************************************************************ 120~240: Scer.....: ccgctactgagtaaatgtttagcttgtacttaactttcaaagacagtttttttgataaacatcagtacatttaataatacatccatacatttatgttaatttgtttttcctttccacctc consensus: ************************************************************************************************************************ 240~360: Scer.....: agtgcgcttctcttttgaaaaaatcctcaacaggccacgcgaacaaatcttaccgagaatttcctaaaatgtttcaaactatcatttagctgcatacaatatgtacattattaattgaga consensus: ************************************************************************************************************************ 360~480: Scer.....: ttaacaactttacctgtactttaccgttatcaaattataaaccaccaaaacaacagattaagaaacaATGGCCCCAAACGTATGATACTTTAAAAGGAATCCACGCCCGATTACGAAGTC consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >======================================== 480~600: Scer.....: TATGTTTTACTGTTATTGTAATGATTGATTGTACGCGAATAACAAGGAAGATAGTAAAACCAAAAAAAAAAAAATAAAAATGTACGAAACGAAGAAGCGTCTATGTGTTTAGTTGCTTTT consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 600~720: Scer.....: CTGTATTTTAAAAATTCACTACTTGAACATTGAACTCTATATCGACTCCCTTCTTTTTATCCGTTTCTGAATGTTTTTTTGTTTGAGATTGTCATATGTGATTGTTAATAGCAGTAGGCA consensus: ************************************************************************************************************************ known....: ======================================================================================================================== 720~840: Scer.....: ACTTTGTGGTTTCGGGATTGAAAGAAAATCGTGAAATATTCGTTTTTTACTAACATTACTGTTCTGAAAATTTTTACTAATTTTCAATCTTTAATTTTTTTGATATAGACTTCCAGAAAG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB BBBBBBB known....: ==========================================================================================================>= 840~960: Scer.....: CAAAAGATTGCCAAGACCTTTACCGTCGATGTCTCTTCTCCAACTGAAAACGGTGTCTTCGACCCAGCTTCCTACGCTAAGTACTTGATCGACCACATCAAGGTCGAAGGTGCTGTCGGT consensus: ************************************************************************************************************************ 960~1080: Scer.....: AACTTGGGTAACGCTGTCACTGTCACTGAAGATGGTACCGTTGTTACTGTTGTTTCCACTGCCAAGTTCTCTGGTAAGTACTTGAAGTACTTGACAAAGAAGTACTTGAAGAAGAACCAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 1080~1200: Scer.....: TTGAGAGACTGGATCAGATTTGTCTCTACCAAGACCAACGAATACAGATTGGCCTTCTACCAAGTCACTCCAGAAGAAGACGAAGAAGAAGACGAAGAATAAattcattaatattatttt consensus: ************************************************************************************************************************ 1200~1320: Scer.....: aaatagagcataagttttgtataattaaaatcttctaaacctaataaatatgtttaatgaatgattcaatatcaaaaaaagaaatccattgggcccttagtgcatttttatttttttttt consensus: ************************************************************************************************************************ 1320~1390: Scer.....: ttttttttttttttttctctttctgaattagagtacatctcatcgcagggtctctttttgcacgtttttg consensus: ********************************************************************** { alias......: ['BOS1', 'SEC32'] chromosome.: 12 description: ER-to-Golgi v-SNARE end........: 286560 exons......: [(1, 3), (93, 824)] gene.......: BOS1 introns....: [(4, 92)] length.....: 824 name.......: YLR078C plength....: 274 start......: 285737 tdist......: 285737 type.......: ORF up.........: 0 } Scer: 3 donors and 2 branches Spar: 2 donors and 1 branches Smik: 1 donors and 1 branches Sbay: 1 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 353), ('Spar', 353), ('Smik', 353), ('Sbay', 353)] ->[('Scer', 775)] ->[('Scer', 1194)] ->[('Spar', 83)] ] [ ->[('Scer', 409), ('Spar', 409), ('Smik', 406), ('Sbay', 406)] ->[('Scer', 625)] ] 0~120: Scer.....: -----------------------------------------------------------------------------------tttcgtgtaatagtccctgcttcaagggtcaaaattc Spar.....: ----------------------------------------------------------------------------------tgttcgtgtggtaatccctgcttctagggtcaaaattt Smik.....: tattccattggaaccagtattgccactgggctgtgtgagatacctagtgcctctggaccttggtgggggtggaaggtgtcattgatcgtgtggtagtccctgcttctagggttaaaattg Spar_spli: DDDDDD 120~240: Scer.....: cgtagaggtttggttgattgatttacaaagacaataccttatcctttggatatgccttctctctttttataaatatcaaaagttgcgacgcgaacaacaagccagccattgaaa-ttttc Spar.....: cgtcgagggttggttgattgatttacaaaaaccgtatcttatcctttgaatatgccttctctctttttataaatgtcaaaagttgcgacgcgaacaacgagccagccattgaaa-ttttc Smik.....: ggttgag----cgttgactgatttacagcagttgtatctttatcgttatat---gcttctctctttttataaatgccaaaagctgcgacgcgaacaacgagccagccattgaaa-ttttc Sbay.....: ------------------------------------------------------gcctctctctttttataaatgccaaaagttgcgacgcgaagaacgagccagccattgaaatttttc consensus: * ***************** ****** *********** *** *************** ***** 240~360: total....: ====== Scer.....: agtgtgctggct-ataatagacaggatcgacgctgtcgatgga-gaaggaaacacggcaatagtgcagatattatcgtgacttaatcatattgatttgaggg----gggaATGGTATGTT Spar.....: agtgtgctggct-ataatagacaggatcgacgctgtcgatggagaaggaagacacggcaatagtgcagatatcatcgtgacttagtcatatttgtttgaggg----gggaatggtatgtt Smik.....: aatatgctggttaataatggataggatcgacgctgttgatggagaaggaagacacggcagtagtacggatagtatcgtgactaagatatattgatttgggggagacgggaatggtatgtg Sbay.....: agtgtgctggct-ataatagaaaggatcgacactcttaatgaagggaaaagacacggcaatagtgcgaatagtattgtgactaagacgaattagttt---ag----gggaatggtatgtt consensus: * * ****** * ***** ** ********* ** * *** * * ******** **** * *** ** ****** * *** *** * ************* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >====== 360~480: total....: ======= Scer.....: -TGATCGCCGGA-GGCATCTTTTCTCATTATTGCTAAAACAAGATGTAATACTAACAGGGTATTTTG-CTACTACCATCAAATAGAACGCTCTTTACAACCATGCTGTGAAGCAAAAAAA Spar.....: -tgatcggtggatgcatttttttctcagtatt-gcaaaacaagagttaatactaacagggtatttttactgttgcaatcaaatagaacgctctttacaatcatgctgtgaaacagaaaaa Smik.....: -tgatcgacggatg-cgtttctttttcagcattgcgaagtaagagttactaaca--aggtattttca-tcattacaatggaatagaacgccctttacaatcatgctgtgaaacagaaaaa Sbay.....: gtgatcgatggatgccattcggttttttgcctcgcgaaataagacttactaacaccggtgttgttat-ttac-attaataaatagaacgctctttacaatcatgctgtgaaacagaaaaa consensus: ****** *** * * * * * ** **** ** ** * * ** * ********** ******** *********** ** ***** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ===================================================================================>= 480~600: Scer.....: TCAACTACAAC-AAGAGTTGGCCAGGTTTGAAAAGAATTCTGTGACCGCCCCTATTTCTTTACAAGGGTCCATCTCTGCAACTCTGGTCTCACTGGAGAAAACAGTTAAGCAATATGCAG Spar.....: ccaacttcaacaaaaagttggccaggtttgaaaagaattctgtgaccgcacctatttcttta.......................................................... Smik.....: ccaacttcaac-aggaattggctagatttgaaaagaattctgtgaccgcacctatttctttgcaagggtccatttctgcaactctagtttctttggagaagacggttaaacaatatgcag Sbay.....: ccaactccagc-aagagttggctaggtttgaaaaaaactctttaactgcccccatttctttgcaggggtctatttttgcgacgttagtctctttggaaaagacaattaagcaatacggag consensus: ***** ** * * * ***** ** ******** ** *** * ** ** ** ******** ** ***** ** * *** ** * ** ** **** ** ** **** ***** * ** 600~720: Scer.....: AACATTTAAACAGATATAAAGAAGATACTAATGCAGAGGAAATTGATCCTAAGTTCGCTAATCGACTAGCAACTTTAACACAGGATCTGCACGACTTTACTGCCAAGTTTAAGGATTTAA Spar.....: ...........................................................aatcgactagcaacgctaacacaggatctgcaagacttt-ctaccaggtttaaggat-tga Smik.....: agcatttaaacagatataaagaagacaccaacacaggagaaatcgatcctaagtttgctaatcggctagcgactttaacacaggatctgcaagattttaatatcaaatttaaaagcctga Sbay.....: agcatctaaacagatataaagaagataccaatgcggaagagatcgatcctaagttcgccaatagattggcgaccttgacaaaggatcttcaagattttacaaccaaattcaaagatctaa consensus: * *** ******************* ** ** * * ** ** *********** ** *** * * ** ** * *** ******* ** ** *** ** ** ** * * Scer_spli: BBBBBBB 720~840: Scer.....: AACAATCCTACAACGAAAATAATTCCAGAACTCAGTTGTTTGGCTCAGGAGCATCGCATGTTATGGACTCCGATAACCCCTTTAGTACATCAGAGACCATCATGAATAAAAGGAACGTTG Spar.....: aacaatcctacaacgagtctaattcgagaactcagttgtttggctcaggagcatcgcacgttATGGATTCTGATAACCCCTTTAGCACATCAGAGACCATTATGAATAAAAGGAACGTTG Smik.....: aacaatcgtacaacgaatctaattccagaactcagttgtttggctcaagaacctcgcctgttATGGACTCAGACAACCCCTTTAGCACATCAGAGACCATAATGAGCAAAAGGAACGTTG Sbay.....: agcagtcttacaacgaatccaattccaggacacaattgtttggtacgggagcatctcctATGATGGAGTCTGATAACCCCTTCAGCACATCAGAGGCAATAATGAATAAAAGAAACGTTG consensus: * ** ** ******** ***** ** ** ** ******** * ** * ** * * ***** ** ** ******** ** ********* * ** **** ***** ******* Scer_spli: DDDDDD 840~960: Scer.....: GTGGTGCGAGTGCAAATGGTAAAGAGGGCTCTAGCAACGGTGGGGGACTACCGTTGTACCAAGGGCTACAAAAGGAACAGTCTGTTTTCGAAAGGGGTAACGCTCAATTAGATTACATTC Spar.....: GTGGCGCGAGTTCAAATGGTAAAGAGGGTTCCAGCAATGGTGGAGGACTACCGTTGTACCAAGGGTTGCAAAAGGAACAATCTGTTTTCGAAAGAGGTAACGCTCAGTTAGATTACATCC Smik.....: GAGGTACGAGTGCAAATGTTAAAGAAGGCGCTAGCAACGGTGGGGGACTACCGTTATATCAAGGGTTGCAAAAGGAACAATCTGTTTTCGAAAGAGGTAATGCTCAATTAGATTACATAC Sbay.....: GAGGGGCGAGTGCAAATAGCAGGGAAGGGTCCAGCAACGGCGCAGGGCTGCCGCTATATCAAGGGTTGCAGAAGGAGCAAACGGTTTTTGAAAGAGGTAATGCTCAATTGGACTACATCC consensus: * ** ***** ***** * ** ** * ***** ** * ** ** *** * ** ****** * ** ***** ** * ***** ***** ***** ***** ** ** ***** * 960~1080: Scer.....: TAGAAATGGGCCAACAATCATTCGAAAATATAGTGGAACAAAACAAAATTTTATCCAAGGTACAAGATAGAATGTCAAATGGCCTAAGAACATTGGGTGTTTCGGAACAAACTATCACCT Spar.....: TGGAAATGGGCCAACAATCACTTGAAAATATAGTGGAACAAAACAAAATTTTATCCAAAGTACAAGATAGAATGTCAAATGGCCTAAGAACATTGGGCGTTTCGGAGCAAACTATCGCCT Smik.....: TGGAAATGGGTCAACAATCATTTGAGAATATAGTGGAACAAAACAAAATTTTATCGAAGGTACAAGATCAAATGACAAATGGCCTAAGAAC-CTGGGTGTTTCTGaac............ Sbay.....: TGGAAATGGGCCAACAATCATTCGAGGATATCATGGAACAGAACAAGATTTTATCCAAAGTACAAGATCAAATGTCAAATGGCCTTAGAACGTTGGGTGTTTCGGAACAAACTATCGCTT consensus: * ******** ********* * ** **** ******* ***** ******** ** ********* **** ********** ***** **** ***** ** ********* * * 1080~1200: Scer.....: CTATCAATAAACGGGTGTTCAAAGATAAACTAGTCTTTTGGATCGCGTTAATTCTCTTGATCATAGGTATTTATTATGTGTTGAAATGGTTAAGATAGaa--------gtaaccgtgagt Spar.....: CGGTTAACAAGCGTGTGTTCAAAGATAAACTGGTTTTTTGGATCGCGTTAATTCTCCTAATCATAGGCATTTATTATGTATTAAAATGGTTAAGATAAa---------gtagccgtgtgt Smik.....: .......ctagcgggtgttcaaggataaactggttttctggattgcgctaattctcctaatcataggtatttattatgtcttgaaatggttaagatagag--------ctaatcgcgtat Sbay.....: CCATTAACAAGAGAGTCTTTAAAGACAAACTTGTCTTTTGGATTGCACTAATCCTTTTAATCATAGGTATTTATTTTGTCTTAAAATGGTTAAGGTAGaaataaccatgtaaccttggtt consensus: * * ** * * ** ** ** ** ***** ** ** ***** ** **** ** * ******** ******* *** ** *********** ** * ** * * * Scer_spli: DDDDDD 1200~1301: Scer.....: tctatatataaataaacatacc--atatatacatgcatcattataagggttgaaaaaacatcgcgaatctcgctactttccttctatgctctttcgtttc- Spar.....: tctatatataaataaacatatc--atatatacatgcatcattataaggggttgaaaaatattgcgaatctcgcagcttttcttctattttcgtctc....- Smik.....: tttatatataaataaataagtcgtatatatacatgcatcgtcaataggggttgaaaagattgcaaagtctcgtttctttagttccatattattttcctatc Sbay.....: tctatttataaataaacatatc--atatatacatgcatcattataagggtctgcaaaaaattgcgagcctcgttctctcttcttcatca------------ consensus: * *** ********** * * *************** * * **** *** * * **** * * ** { alias......: ['NYV1', 'MAM2'] chromosome.: 12 description: vacuolar v-SNARE end........: 327416 exons......: [(1, 16), (158, 903)] gene.......: NYV1 introns....: [(17, 157)] length.....: 903 name.......: YLR093C plength....: 301 start......: 326514 tdist......: 326514 type.......: ORF up.........: 0 } Scer: 8 donors and 3 branches Spar: 6 donors and 1 branches Smik: 5 donors and 2 branches Sbay: 6 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 349), ('Spar', 349), ('Smik', 349), ('Sbay', 349)] ->[('Scer', 509), ('Spar', 509), ('Smik', 509), ('Sbay', 509)] ->[('Scer', 766), ('Spar', 766), ('Smik', 766), ('Sbay', 766)] ->[('Scer', 871), ('Spar', 871), ('Sbay', 871)] ->[('Scer', 1532), ('Spar', 1532), ('Smik', 1532)] ->[('Scer', 1370), ('Spar', 1370)] ->[('Sbay', 1419)] ->[('Sbay', 1511)] ->[('Scer', 1220)] ->[('Scer', 1252)] ->[('Smik', 298)] ] [ ->[('Scer', 469), ('Spar', 469), ('Smik', 469), ('Sbay', 469)] ->[('Scer', 371)] ->[('Scer', 1194)] ->[('Smik', 1349)] ] 0~120: Scer.....: -----tagaccccccaccttttcatcgccttcaccccacccatttgcattatctaaaaatagtaaactatatattctaccaccacattcattatatataatatttaaaacaacgcattac Spar.....: tagcctgcccaccacaccttctcatctccttcaccccacccatctgcattatctaaaaatagtaaactatatattctaccaccacattcatattatataacatttaaaacagcgcattgt Smik.....: .....taaacgatcctccctaccatctcgttcgccca--ccatttgcatcatctaaaaatagtgaactatatattctaccatcacattcacattacataatattt-atacaacgcattac Sbay.....: --------------ccgatactgaccacct--gccctcctcatttgcattttattgaaaataaataatatatattccatcatcacat------tacataac-cttaaaagaactcattgg consensus: * * * * * *** *** ***** * * *** * ********* * ** ***** ** **** ** * * * * **** 120~240: Scer.....: caccaagcgcccgggtaa-------tattcgcctcaaacgatcgaag--aaagaaaaaatgaggtcacaataatgatgaaaaaaagcccctctatgaattttctagcacttgactaagtt Spar.....: catccagtacccgggtaa-------tattcgccttaaacgattgaag--aaaaaaaaattggggtcacaataatggtgaaaaaaagcccctctatgaactatctagagcatggccagttt Smik.....: catttagcacccgggtaa-------tattcgcctcatacgatacaagaaaaaaaaaatttggggtcacaataatggtg-aaaaatgcctcta--tggactatctagcacctggccgactt Sbay.....: catacttttcccgggtaaggcgcgcctttcgtcttaacgaactcaagacaaagaaaatttggggtcacaatagtgatg-aaaaaagcctctat-cgggctaaccagcacataggcaattt consensus: ** ********* **** ** * * *** *** **** ** ********** ** ** ***** *** ** * * * ** * * ** 240~360: total....: ====== Scer.....: ggagcaacagctattaaa-tttgaagaac-agagtgaaaagcgacaatttattaagctgttagagcattggacttttata-tttt--taccaaATGAAACGCTTTAATGGTATGTATAAA Spar.....: ggagcgacagctaccaaattttaaacaacgggagtgaaaagcgacaatttattgaactgttagtgcattggacttttacattttt--taccaaatgaaacgctttaatggtacgtataaa Smik.....: ggtgcgatagctacgaattttcgaacagt-agtgtgaagagaggcaatttat---actgtcagtgcattacattttttattttcttataccaaatgaaacgctttaatggtacgtataaa Sbay.....: ggagctgtacttaccaggtgttgaacgac-ggggcgtaaaaagacgagttgctcaaccatcactgcattgtgtctataagttttt--tgccagatgaaacgctttaatggtacgtataaa consensus: ** ** * ** * * ** * * * * * * * * ** * * * ***** * * ** * * *** ******************* ******* Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD DDDDDD Sbay_spli: DDDDDD known....: >========== 360~480: total....: ======= Scer.....: TATTTCTACACAATTAACAAATG--TTTAAAAAAGGGATTATGCGA-ATGCT--------CATCCCCCCATGCCATAATTTTA-----CTATGTT----ACATTCAGTAGACTAACGTTC Spar.....: catttctacgcaattgacaaatg-attaaaaaaagggaatacgcga-atgctctcgcctacagtttcccatgtcataatttcagtttcttttgtt----acgttcagtagactaacat-- Smik.....: cattcctacaaaattgacacatgactaaaaaaaagggattatgtgagatgtcc--gtctgca-ttccccatgttattgttttattttctttcctttatgatttacagtagactaacagat Sbay.....: catttctatgcgaacgataaatg--agaaaaaaagggattgagtgt-atatcgcattctctacagtttcttcttttacttcgga----tttcctt----atgttctggggactaacaaat consensus: *** *** * * * *** ********** * * * ** * * * * ** * ** * * * * ******* Scer_spli: BBBBBBB BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 480~600: total....: ====== Scer.....: CATTTTGCTTGATTTTGCATATGGTCTTAGTAAGTTATGTGGAAGTTATAAAAAATGGTGAAACAATATCTAGTTGTTTCCAGCCGTTCCAGAAAAACGAAAACTATGGTACAATAACTT Spar.....: --------ATGATTTTGCATCTGTTCTCAGTAAGTTATGTGGAAGTTATCAAAAATGGTGAAACAATATCTAGTTGTTTCCAGCCGTTCCAGAAAAATGAAAACTATGGTACAATAACTT Smik.....: tgaattgcttgattttgcatatattcttagtaagttacgtggaagtgatcaaaaatggtgaaacaatctccagttgtttccagccgttccagaaaaatgaaaactatggtaccataacct Sbay.....: tctgtcgcttgattttgcggctactcttagtaagttacgtggaagtcatccagaatggtgaaacaatctctagttgtttccagccgttccataagaatgaaaactacggcacgatacctt consensus: ********* * *** ********* ******** ** * ************** ** ******************** ** ** ******** ** ** *** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: ============================>= 600~720: Scer.....: CAGCAAACGAGCAGATAACGCCGGTCATTTTCCATAATTTGATCATGGATATGGTATTACCCAAAGTAGTTCCGATCAAGGGGAACAAAGTTACCAAGATGTCAATGAATCTCATCGACG Spar.....: CAGCGAACGAACAGATAACACCGGTCATTTTCCACAATTTGATCATGGACATGGTGTTGCCCAAAGTAGTTCCGATCAAGGGGAACAAAGTCACCAAGATGTCGATGAATCTCATTGACG Smik.....: cagcgaacgaacagataacaccagttatctttcataatttaatcATGGATATGGTATTGCCGAAAGTGATTCCGATCAAGGGCAACAAAGTCACGAAGATGTCAATGAATCTCATTGACG Sbay.....: cagcaaacgaacagataacaccggttatcttccataatttgatcATGGACATGGTGTTGCCCAAGGTGGTTGCCATCAAGGGTAACAAAGTCACCAAAATGTCAATGAACCTCATTGACG consensus: **** ***** ******** ** ** ** ** ** ***** ******** ***** ** ** ** ** ** * ******** ******** ** ** ***** ***** ***** **** 720~840: total....: ====== Scer.....: GATTCGATTGTTTCTACTCCACGGATGACCATGACCCCAAAACTGTGTACGTTTGCTTCACATTAGTAGATATGCCCAAGATTTTGCCCATCAGGATACTAAGTGGGCTGCAGGAATACG Spar.....: GGTTCGATTGTTTCTACTCCACAGATGACCATGACCCCAAGACTGTGTACGTTTGTTTCACGTTAGTGGATATACCCAAGATCTTGCCCATCAGGATATTAAGTGGTCTGCAGGACTACG Smik.....: GTTTCGATTGCTTCTACTCTACGGATGACCATAACCCCAAGACTGTGTACGTTTGTTTCACGTTGGTAGATATACCCAAAATCTTGCCCATT............................ Sbay.....: GGTTTGACTGTTTCTACTCCACGGACGACCACGACCCGAAGACTGTGTATGTTTGCTTCACGCTAGTGGACATACCCAAGATTTTGCCCATCAGGGTACTGAGTGGGCTCCAGGACTATG consensus: * ** ** ** ******** ** ** ***** **** ** ******** ***** ***** * ** ** ** ***** ** ******** *** ** * ***** ** ***** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 840~960: Scer.....: AGTCCAACGCTACAAACGAACTTTTAAGTTCGCATGTAGGTCAAATACTAGACTCTTTCCATGAAGAGCTGGTCGAATACCGTAACCAAACTTTAAATAGTTCTGGAAATGGCCAATCTA Spar.....: ATTCCAACGCTACAAACGAACTTTTAAGTTCGCATGTAGGTCAAATACTAGACTCTTTCCATGAGGAGCTGGTCGAATACCGCAATCAAACTTTAAACAGTTCTGGAAATGGCCAATCTA Smik.....: ..........................................................................AAAAACCGCAATC-AATTTTAAACAGTTCTGGGAATGCTCAGTCTA Sbay.....: ACTCCAACGCCACGAACGAATTATTGAGTTCGCATGTAGGCCAGATACTAGACAGTTTCCATGAAGAGCTGGTGAAGTACCGCAATCAAACCTTGAATAGCTCTGGAAACGGCCAGTCTA consensus: * ******** ** ****** * ** ************** ** ********* ********* ******** * **** ** * ** ** ** ** ***** ** * ** **** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 960~1080: Scer.....: GTAATGGGAATGGTCAGAACACTATAAGTGACATCGGGGATGCCACCGAAGACCAAATAAAGGACGTCATCCAGATAATGAACGATAACATCGACAAGTTCTTGGAGAGACAAGAAAGAG Spar.....: GTAACGGGAATGGTCAAAACACTATCAGTGACATCGGGGATGCCACCGAAGACCAAATAAAGGACGTCATTCAGATAATGAACGATAACATCGACAAGTTCTTAGAAAGGCAAGAAAGAG Smik.....: GTAAAGGAAGCGGTCCAAATACTATTAGTGACATCGGGGATGCCACCGAAGATCAAATAAAAGACGTCATTCAGATAATGAACGATAATATTGATAAGTTTTTAGAGAGGCAAGAAAGAG Sbay.....: GTAGCGGTAATGGTCAAGACACCATCAGTGACATCGGAGATGCCACCGAAGACCAAATAAAAGATGTTATCCAGATAATGAACGATAACATCGACAAGTTTTTGGAGAGGCAAGAACGAG consensus: *** ** * **** * ** ** *********** ************** ******** ** ** ** ***************** ** ** ***** ** ** ** ****** *** 1080~1200: Scer.....: TTTCTTTATTGGTGGATAAAACTTCCCAACTAAATAGCAGCAGTAATAAATTTAGGCGCAAAGCGGTCAATATAAAAGAAATAATGTGGTGGCAGAAGGTCAAAAATATTACGTTATTAA Spar.....: TTTCTTTATTGGTGGATAAAACCTCCCAATTAAATAGTAACAGTAATAAATTCAGACGCAAAGCGGTCAATATAAAAGAAATAATGTGGTGGCAAAAAGTTAAGAATATTACATTATTGA Smik.....: TTTTTTTACTGGTGGATAAAACCTCCCAACTAAATAGTAACAGTAATAAATTTAGACGTAAAGCAGTCAACATAAAAGAAATAATGTGGTGGCAAAAAGTTAAAAATATTACACTATTGA Sbay.....: TGTCTCTACTAGTGGACAAGACTTCACAACTGAATAGCAGCAGTAATAAATTTAGACGTAAAGCCGTCAACATAAAGGAAATAATGTGGTGGCAGAAAGTCAAAAATATTACGCTGTTGA consensus: * * * ** * ***** ** ** ** *** * ***** * ************ ** ** ***** ***** ***** ***************** ** ** ** ******** * ** * Scer_spli: BBBBBB 1200~1320: Scer.....: CTTTCACTATTATACTATTTGTAAGTGCTGCTTTCATGTTTTTCTATCTGTGGTAAgtaaataaaaaaaaaggggagctgtcccacgacaataacattaataacggttgtatttcttttg Spar.....: CTTTTACTATCATACTATTTGTAAGCGCTACTTTCATGTTTTTCTATCTGTGGTGAgaaaataaaaaaaatggggagctgtcccacgacaataacattaataacggtt-tgtactttttt Smik.....: CTTTTACAATTATATTGTTTGTTAGTGCCGCTTTCATGTTCTTCTATCTGTGGTGA-----------------ggtgcggtcccacaacaataacattgacgtttgt--tcttctcctta Sbay.....: CTTTTACAATTATACTTTTTGTTAGTGCTGTTTTTATGTTTTTCTATTTATGGTGAgaaaata--------ggggaac--tcccactacaataacattgacagttttt-tctctctttta consensus: **** ** ** *** * ***** ** ** *** ***** ****** * **** * ** * ****** *********** * * * * ** Scer_spli: B DDDDDD DDDDDD 1320~1440: Scer.....: ttcctgagaggaagagaaaaataaaataaaaataaggtaaatatttataggta--tgtatatgctcacgatggcaccatcctacctattatttcttattatata---aacagtgtctatc Spar.....: tccctaagagaaaaagaataaaaaaaacgaaataaggtaaatacgtataggtaagtgggcatactcgtgacggcaccatcttacctgttatttcttattatata---aacagtgtctatc Smik.....: ctcccgaaaaatag-taataaaaaaaatgaattaacgtatatatgtataagt----gaatgtgctcgtgagggcgccattcgttctattattt-ctattatata---aacaatgtctatc Sbay.....: ttcttg-----------aaaaaaaaataaaaatatggtaaatacatataggt--------gtacctgtggcagcgccatagtacttgttattt-ttattgtatgaataataatgtctatc consensus: * * ** **** ** ** *** *** **** ** * * * ** **** * ****** **** *** ** * ******** Scer_spli: DDDDDDDD Spar_spli: DDDDDD Smik_spli: BBBBBBB Sbay_spli: DDDDDD 1440~1557: Scer.....: tcattatgatattaaatgtatac---ttttaaggggg----aaaactttttggtttaggaatatagaaaaaaagagatgat-ataaatgtttgcatgtccattgtaaatgcattgg- Spar.....: tcattatgatattaaatgtatac---ttttaagggagggaaaaaactttttggttttggaatatagaaaaaaaaaggaatg-ataaacttttgtatgcaaattgagaacgcgttga- Smik.....: tcattattatgttaaatgtatac--ttttaagggtgggggaaaaactttttggttctggaatatagaaagaaaaaaagaatgataaatgcttgtatgcatattgtaaatgcatttga Sbay.....: ttattatgatattaaatgtatacacacttatattagggaaaaacggtttttacttttggaat-------aagtatgtgtat-attagaatttataaacatattgtaaagggattga- consensus: * ***** ** ************ ** * ** ***** ** ***** * ** * ** * **** ** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD { alias......: [] chromosome.: 12 description: Hypothetical ORF end........: 399434 exons......: [(1, 3), (98, 904)] gene.......: introns....: [(4, 97)] length.....: 904 name.......: YLR128W plength....: 301 start......: 398531 tdist......: 398531 type.......: ORF up.........: 1 } Scer: 4 donors and 1 branches Spar: 3 donors and 1 branches Smik: 0 donors and 0 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 215), ('Spar', 215), ('Sbay', 215)] ->[('Scer', 1000), ('Spar', 1000)] ->[('Scer', 1318), ('Sbay', 1318)] ->[('Scer', 1159)] ->[('Spar', 296)] ] [ ->[('Scer', 267), ('Spar', 267), ('Sbay', 267)] ] 0~120: Scer.....: gatggaaaaaccttaactataagccataaatatttacagtcccgctaagtctggctttcgtctagttttc-gatattttggctct-tttgtctattactgtttttgtaaccaaaggtttg Spar.....: aacgtaacaat-ttaactacacgccataaatatctataatctcgctagatttggctttcatctagttttc-gatattttagccct-tttgtttactactgtttttgtaaccaagggtttg Sbay.....: .....................................aattcc---aactcgaatttttatctgtttttctgttattttagccctctttgtttattattgtttttgtaaccaaaggtttg consensus: * * ** ** ******* * *********** ** * * * * * *** *** ***** * ****** ** ** ***** ** ** *************** ****** 120~240: Scer.....: aaaatttagatgcaactaatgaacttacgcagtaacatgcaagtacccaataaaaaaagaaatttttgaagagacgttcttgcattcaggacATGGTATGT--------TTTTAATTTCG Spar.....: aaaatttggatatacctcatgaacttacgcaataacatacagatacccgtaaaaaaaagaaaatattgg-gatacgttcttgcattcaagacatggtatgtaatcg---ttttaattctg Sbay.....: aaaatctagatgtaattagagaaagaacgtattgaaactaa---acatagacagaaaaggaagtagcgg-ccggtgtacacttatttgaaacatggtatgtaattcggattatgttttta consensus: ***** * *** * * *** *** * * * * * ** * ***** ** * * ** * *** *********** ** * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD known....: >======================== 240~360: Scer.....: TTTCTTTAGTTCTCAGGCTCTTCAAAGTACTAACACTTTATTGGCAAGGGGCGCTCAAATGTGATGCATCATTATAGAGTAATAATAAAATAAAAAGAAAGGATGCAAGCCCGGAACAAG Spar.....: ttcctttaactgtcaggttctccaaaacactaacactttgttggcaagaggcgttcgcatgtaatgcatcattatagagtagtaa---aataaaaggagaggatacgagcccggagcagg Sbay.....: ttttcccaactatcacgacgttcaaggcactaacactgcaatggcaagaaggat---------atgcattattatagagtagtaa---aacaagacaagaacgagaaagcccggaacgtg consensus: ** * * *** * * *** ********* ******* * ****** *********** *** ** ** * * * ******** * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB DDDDDD Sbay_spli: BBBBBBB known....: ===========================================================================>= 360~480: Scer.....: AGGCAATTGAATCATTCACCTCATTAACCAAATGTGACCCCAAGGTATCCAGGAAGTACCTGCAGCGTAATCACTGGAACATCAATTACGCTCTCAATGATTATTATGACAAGGAAATAG Spar.....: aggcaatcgaatcattcacctcgctgaccaaatgtgacttcaaagtatccaggaagtacttacagcgtaatcactggaacatcaattacgctctcaatgattattatgacaaggaaatag Sbay.....: aggcaatcgaatcattcacgttgctcaccaaatgtgatcctaaggtgtccagaaaatacttacaacgcaaccattggaatgtcaattatgcactaaatgaatactatgacaaggaaatag consensus: ******* *********** * * *********** ** ** ***** ** *** * ** ** ** ** ***** ******* ** ** ***** ** **************** 480~600: Scer.....: GGACGTTTACTGACGAGGTTTCAACTGTGGCTCATCCACCCGTATACCCGAAGGAGCTAACACAGGTATTTGAACACTATATCAATAACAACTTGTTTGATATAGACTCACTGGTCAAGT Spar.....: ggacatttactgacgacgtttcggctccggttcatccagttatatacccgaaggaattaatacaggtatttgaacactacagcagtaacaatttgttcgatatagactcactgatcaagt Sbay.....: ggacatttacagaagaggttccgacccccgcctatccagtgatatacccaaaagaattggtgcaggtgttcgatcagtacgccagtgctggctcatttgacATGGACTCCTTAATCAAAT consensus: **** ***** ** ** *** * * * ***** ******* ** ** * ***** ** ** ** ** ** * * ** ** ** ***** * **** * 600~720: Scer.....: TCATTGAGGAGCTAGGCTACAATCTTGAAGATTTAGCGACATTATGCTTAGCCCATTTACTGGGGTACAAGAAACTAGAAGAACCCTTAAAACGAGAGGACTTCCTGTCAACATGGTTTA Spar.....: tcattgaagacttaggctacaacctggatgatttagtaacgttatgtttagcgcatttactagggtacaagaaactagaagaacctttaaaacgagaggacttcctgtcaatatggtttA Sbay.....: TCATTGAAGACTTGGGCTACAACCTGGAAGATTTAGCGACATTATGCCTAGTCCATTTACTAGGGTACAAGAAATTAGAAGAGCCCTTAGATCGAGAGACATTTTTGTCGGCGTGGTTCA consensus: ******* ** * ******** ** ** ******* ** ***** *** ******** ************ ******* ** *** * ****** ** **** ***** * 720~840: Scer.....: TGCAAGGCTGTTCCACCATTTCAGACATGCAAGAGTGCATCAAGACGTTAGATGTTAAATTACATGAAGACTTACAATATTTCACACAGATTTATAACTATGCTTTCAATTTGATTCTGG Spar.....: TGCAAGGCTGTTCCACAATTTCAGAGATGCGAGAGTGCACCACGCGGTTAAACGTTAAATTACATGAAGACTTACAATATTTCACCCAAATCTACAACTACGCTTTCCATTTAATTCTGG Sbay.....: TGCAAGGCTGCTCTACACTTCCAAACATGAAAAAGTGCGTCAAGGGGCTTGATGCTAAGCTACATGAAGACTTGCAATACTTCACAGAGATTTACGACTATACCTTCCATTTAATATTGG consensus: ********** ** ** ** ** * *** * ***** ** * * * * * *** ************* ***** ***** * ** ** **** * *** **** ** *** 840~960: Scer.....: ACCCAAATCGAAAGGATATAGATACAGACGAAGGCATCCAGTATTGGAAGC-TATTTTTCCAACCAGAGTACCCAGTGCGTATGGAACCAGATTTGCTTGAGGCATGGTTCCGTTTCCTT Spar.....: ACTCGAATCGCAAAGATATAGACACAGACGAAGCTATTCAGTATTGGAAGC-TATTTTTACAACCAGAGTACCCAGTGTGTATGGAACCAGACTTGCTTGAGGCATGGTTCCTTTTCCTT Sbay.....: ATACGAACCGCAAGGACATAGACACAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN consensus: * * ** ** ** ** ***** ***** **** ** ********************* ****************** ************* ******************* ******* 960~1080: Scer.....: CGCGATGAGGGGAAAACCACTATAAGTAAAGACACCTGGCGTATGCTGCTCCTCTTTTTCAAACGATACCCCACTATTCAGAAAATAATAAGCGATTACGACGAAACTGCAGCCTGGCCA Spar.....: CGCGATGAAGGGAAAACCACAATAAGTAGAGACACATGGCGTATGTTGCTCCTCCTTTTCAAGCGATACCCCGCTATTCAGACAATAATGGACGATTACGACGAAACTGCAGCCTGGCCA consensus: ******** *********** ******* ****** ********* ******** ******* ********* ********* ****** **************************** Scer_spli: DDDDDD Spar_spli: DDDDDD 1080~1200: Scer.....: TTTATTATCGATGAGTTCTATGAGTGCTTACAGGATCAGCAATAAac------------atcctttcatatacttaagggtatgctgt------ttaatattgca-tggaatacgttacc Spar.....: TTCATTATCGATGAGTTCTACGAGTACTTACAAAATCAGCAATGAgc------------acctctttatacaattaaacgtgtgccgt------tcattattgta-taacatccgttacc Sbay.....: NNNNNNNNNGATGAGTTCTACGAATTTCTGCGGGACTAGcaagaaactggaacaattgaaaaactttccgtgataatagacatgttgcacatcgttattattatgctataaggcattacc consensus: ** ***************** ** * * * * ***** * * * ** * * ** * * * **** * * * ***** Scer_spli: DDDDDD 1200~1320: Scer.....: cttc---taagatagatgggaataaggcggaaataaaaaacgcgatgagcagtggaaaatttttcagaaatttt-cagttccctcataatatagatg--tagatattgtataagg-tcgt Spar.....: cttccaataatatttatgggaataaggcggagataagaaacgcgatgagcagtggaaaaattttcagaaatttt-cacttcctacattatatagaca--tatatattgtaaaaagattga Sbay.....: cttct--catttttaacgggaataggacggagataa-aaacgcgatgagctttggaaaaattttcattaatttttcacttaccactttatatagagagatacatattgtataagg-tagt consensus: **** * * * ******* * **** **** ************* ******* ****** ****** ** ** * * * ******* ** ******** ** * * * Scer_spli: DD Sbay_spli: DD 1320~1376: Scer.....: acgtatatcagag--tagccactagaaggaccagagaaactggaataagagctatt Spar.....: acgtataccagac--tggccattagaacgatcagcgaaactggaataagcgctatt Sbay.....: gagtatagtagacagtagccgtaagaaagatcagcgaagtaggaattaaaactatc consensus: ***** *** * *** **** ** *** *** ***** * **** Scer_spli: DDDD Sbay_spli: DDDD { alias......: ['RPL37A'] chromosome.: 12 description: 60S ribosomal protein L37A (L43) (YL35) end........: 523290 exons......: [(1, 7), (367, 626)] gene.......: RPL37A introns....: [(8, 366)] length.....: 626 name.......: YLR185W plength....: 208 start......: 522665 tdist......: 522665 type.......: ORF up.........: 1 } Scer: 4 donors and 3 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 55)] ->[('Scer', 657)] ->[('Scer', 804)] ->[('Scer', 878)] ] [ ->[('Scer', 260)] ->[('Scer', 280)] ->[('Scer', 964)] ] 0~120: Scer.....: gccttcttgtgattattaatctttgatgtgtcgtggcagatgtatatggacttttgtacgtaaagtagattgctataattcaattctaaatgaatgaaagtagagaaagagtttccattg consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: atgaattttagtttacgtcgactgccgctgttcattctcatcaaaacacgaaagcaaaccatagagatgaacttaagaaaaaagggccacgggatttttttttcgcgttttggcgttttc consensus: ************************************************************************************************************************ 240~360: Scer.....: atatcaaaaaaaaaaaaccatattaacatctgtacattattattaactaaacatccgtacacaaaaggttttccaagacaaaacgttgtcgagactattctctttcgaagaaattctaaa consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB BBBBBBB 360~480: Scer.....: acacacttcggcaggccggcaacaagaaggcggccccttggggaaagggaagtcaatccgtctgcccgttctctaggctgatggtaggcagggcgatgccatactggtgaagtgtggtcc consensus: ************************************************************************************************************************ 480~600: Scer.....: gtcggtctgtctcctccaaacgttgatgttctcctggtagctttctcatcaccgtcaatattacaagtgtaagaatgagaaatgctctatatgagggtactattaaatttcaaaaatgtt consensus: ************************************************************************************************************************ 600~720: Scer.....: tacttttaagaggtatttgctaaagcctcatacaaataatatagacaaaaATGGGTAGTATGTAGTAGGACATTGAGAATAAAACTGTGAACCTGTTATTGACGACCGTGGAGAAATGTT consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: >============================================================== 720~840: Scer.....: ATGATTATCTGAAGAGAAATATCGGAACGCATGCACACCAAATTTATACTTAGCAAGACTGGACGATACGAGACTGGTATACTTGTATGAAGACAGAATAGTGAACGAAAGACATGCGCA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ======================================================================================================================== 840~960: Scer.....: TGACAACAAATTTACCGTATAGAAGAAATATTCTGCTTGTATGCCTGAGGGAACTCGAAAGGATCAATTTCAATGGCGTTGTAACAGTCACGAAAAAAGTGTAACTATAAGATAAAGCAA consensus: ************************************************************************************************************************ Scer_spli: DDDDDD known....: ======================================================================================================================== 960~1080: Scer.....: ATTGTACTAACAAACTTAACCAAATTGCACAACAATTTGATTTTCTTTTTAAATAGAGGGTACTCCTTCATTCGGTAAACGTCACAACAAGTCCCACACTTTGTGTAACAGATGTGGTCG consensus: ************************************************************************************************************************ Scer_spli: BBBBBBB known....: ======================================================>= 1080~1200: Scer.....: TCGTTCTTTCCATGTTCAAAAGAAGACCTGTTCCTCCTGTGGTTATCCAGCTGCTAAGACCAGATCTTACAACTGGGGTGCCAAGGCTAAGAGAAGACACACTACTGGTACTGGTAGAAT consensus: ************************************************************************************************************************ 1200~1320: Scer.....: GAGATACTTGAAACACGTTTCAAGAAGATTCAAGAACGGTTTCCAAACCGGCTCTGCTTCTAAGGCTTCTGCTTAAtttttatactaagatctatttctttaaatgaaaactcaataatt consensus: ************************************************************************************************************************ 1320~1440: Scer.....: agagaccttatataataaccaactgcaaaaaaacttctaaacaattagttaacaaatctccagcctttttttaatatatctttattcatatgtaacgcctttgagtgcttacgggaaaag consensus: ************************************************************************************************************************ 1440~1560: Scer.....: tagaattgatagtttcgtaattcatgaccggaaaaagtgaaaaattattgttcgatgaatatatacagagatgtcttgaactgtttttgccagcatcattcgttatagggagcaaagtta consensus: ************************************************************************************************************************ 1560~1619: Scer.....: gtgcaacccagttaccagatatctagtcaccaagaagaaaacccgtaaaatcgtaggtc consensus: *********************************************************** { alias......: [] chromosome.: 12 description: Hypothetical ORF end........: 564531 exons......: [(1, 18), (78, 740)] gene.......: introns....: [(19, 77)] length.....: 740 name.......: YLR211C plength....: 246 start......: 563792 tdist......: 513641 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 5 donors and 2 branches Smik: 1 donors and 1 branches Sbay: 2 donors and 1 branches INTRON SPLICING FOUND!! [ ->[('Scer', 354), ('Spar', 354), ('Smik', 354), ('Sbay', 354)] ->[('Scer', 1393), ('Spar', 1385), ('Spar', 1401), ('Spar', 1409)] ->[('Sbay', 255)] ->[('Scer', 972)] ->[('Scer', 1153)] ->[('Spar', 943)] ] [ ->[('Scer', 399), ('Spar', 398), ('Smik', 399), ('Sbay', 399)] ->[('Scer', 317)] ->[('Spar', 1296)] ] 0~120: Scer.....: tgatgccttccttgttcaggaattttacca-ccgcccaatagttttattatagtactctcaatatatctataccaacaaccgcttcaaatgtattatctccctttat-aaattctgcact Spar.....: tgatgctttccttcttcagtaattttaccatttggccaactg-tttataat-gcgctgtcaagttatcaataccaacaaccgcttcaaatgtactatctccatttat-aaattccccact Smik.....: tgatcctcttattctttaaaaattctcacctttaccaattcattttgtaatgacacagtcaat-tatcaatatcaaaaaccgcttcagatgtattattcccattcat-aaattatatatt Sbay.....: taacg--tcccttttttacaaattcta-tatgtactcattct-attgtaatggtacaatctatgtatcgatagtaactaccccttt-aatgtattatttccatttataaaattcatcgtt consensus: * * ** ** * **** * * ** * ** * ** * **** *** ** *** *** ***** *** ** ** ** ***** * 120~240: Scer.....: gtattgtaatatgtataaagctctgtaccactttttcatcattgcatacatcgatagcgcc--tcttcaactttagaatttcctaaagggtag-aaaaaccagatgattcaactc--agc Spar.....: gtattgtaatatgtataaagctctgtatcttttttccatcattgcacatactgatagcgcc--tcttcgatttctaaattctctagggggcgg-aaaaaccagaagacacaattcagagt Smik.....: gtattgtaatatctataaagctctata--cctttttcatcattgcatatactgatagcgcctcttttcggttcctgga--cccgaaggggtt--gaaaactggaaagtactattcaaagt Sbay.....: gcattcttatatgaaccaagtt-tgta--atttttttctttttgtatac--tgatagcgccatttttcgatttctgggttccctaaagggtggaaaaaaccgaaaggcctaatgcagagt consensus: * *** * **** * *** * * ** **** * *** * * ********* * *** * * * *** ***** * * * ** 240~360: total....: ====== Scer.....: gtaatggaacgctctgtttgaaataaaaaacatctgtatcgctgcacggattagttcgat-aattcaacgacagttatactaatcttggtgatggaATGAGTACTTTAGCGGAAGTAAGT Spar.....: gcgatggaacgctctgcttggaatacaaaacatctatctcgctgcacggaccatttcgataaattcaaccacagttatacaaaccttagtgatggaatgagtactttagcggaagtaagt Smik.....: gggatgaaaggtgcactctatatt---------ctgtaacgc----cgaactagcttg----attcaacgacagtcgtacaaaacttagtgatggaatgtgtactttagcagaagtatgt Sbay.....: gcgatggaaagatctgtatgaggtacaacttagcaaattgatggttccattcaattggtaaacttcgacaacagtccatgtaagattagtggcagaatgagtactctagcagaagtaagt consensus: * *** ** * * * * * * * * * *** ** ***** ** ** *** ***** ***** **** ****** ** Scer_spli: BBBBBBB DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD known....: >===== 360~480: total....: ======= Scer.....: TT--TTGAATTATGCCCCCACTTTTTTTTTGTTCATGGTGACTAACATGAATT-------------------AGGTTTATACTATTATTGAGGACGCCGAACAGGAATGTCGAAAAGGAG Spar.....: tt--ttttattatgcttcc---ttttttttgttcATGG-AACTAACGAGAATTATAAACAATATTTGTATTCAGGTTTATACTATTATCGAGAACGCCGAACAGGAATGTCGAAAAGGAG Smik.....: ttt-ttgatttatatatta---ttttttcaatgaatggagactaacgagaattataaacaatacttatattcaggtttataccataatagagggcgctgaacaggaatgtcgaagaggag Sbay.....: tttgttcggttatggctt----gccttttagttcatgaagactaacaaacattataaaatattattatact-aggtttatactataatcgagaatgctgaacaggaatgtcgaagaggag consensus: ** ** **** *** * *** ****** *** ********** ** ** *** ** **************** ***** Scer_spli: BBBBBBB Spar_spli: BBBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ========================================================================>= 480~600: Scer.....: ATTTTACAAATGCAAAAGCGAAGTATCAAGAAGCCATTGAAGTTTTAGGTCCGCAGAACGAGAATTTGTCTCAAAATAAATTAAGTTCTGACGTTACGCAAGCCATTGACCTATTAAAAC Spar.....: ATTTTGCTAATGCTAAAACAAAGTATCAAGAAGCCATTGAAGTGTTAGGCCCGCAGAACGAGAATTTGTCTCAAAATAAATTAAGTTCTGACGTTACGCAAGCCATTTATTTATTAAAAC Smik.....: attttgctaatgcaagaacaaagtaccaagaagccattgaagtattaggtccacagaacgaaaatttatctcagaataaactaagtgatgacgttacgcaagccattgatttactgaaac Sbay.....: attttgctaatgcaagggtaaaatatcaacaagccattgaggtattgggcccgcacaacgagaacttatcacaaaacgaattaagttcggatgttacacaagcggttgatttattaaaac consensus: ***** * ***** * ** ** *** ********** ** ** ** ** ** ***** ** ** ** ** ** ** ***** ** ***** ***** ** * ** * **** 600~720: Scer.....: AGGACATTACAGCCAAAATCCAAGAATTGGAACTTTTGATTGAAAAGCAGTCATCAGAAGAAAATAATATTGGAATGGTCAACAACAATATGCTTATTGGCTCTGTTATTTTAAACAACA Spar.....: AGGACATTACGGCCAAAATCCAAGAATTGGAGCTTTTGATTGAAAAGCAATCATCGGAAGAGAATAATATTGGAATAGTTAACAACAATACGCTTATTGGCTCTGTTATTTTGAACAACA Smik.....: aggacattacagccaaaattcaggagttagagcttttgattgaaaagcagtcactagaagaaaataacattgggattgttaacaacaacATGCTTATTGGATCCGTCATTTTAAATAACA Sbay.....: aggacataacagcaaaaattcaagaattagaacttttaattgataagcaatcaccagaagagaacagtatcggaATGCTTAACAACAATATGCTTATTGGGTCCGTTATCCTGAACAACA consensus: ******* ** ** ***** ** ** ** ** ***** ***** ***** *** ***** ** * ** ** ** * ******** * ********* ** ** ** * ** **** 720~840: Scer.....: AATCTCCGATAAATGGAATAAGCAATGCTAGGAATTGGGATAACCCAGCATATCAGGACACTTTAAGTCCCATAAACGATCCACTTCTTATGTCAATTTTAAACCGCTTACAATTTAATT Spar.....: AATCTGCGATAAATGGAATAAATAACACCAGGAATTGGGATAACTCAGTTTACCAGGACACGTTAAACCCCATAAACGATCCAGTTCTTATGTCAATTTTAAACCGCTTGCAATTCAATT Smik.....: GAACCCCGATGAATGGAATAGGAAATACAAGAAATTGGGATGATTCAGAATACCAGGACACGTTAAACCCCATTAACGATCCAATTCTCATGTCAATTTTAAATCGTTTACAATTCAATT Sbay.....: AAACTTCGATAAATGGAGTGGGCAATACTAGAAACTGGGATAATTCAATATATCAGAATTCATTGAACCCCCAAAACGATCCTGTTTTGATTTCAATTTTAAATCGCTTGCAATTTAATT consensus: * * **** ****** * ** * ** ** ****** * ** ** *** * * ** * *** ******** ** * ** *********** ** ** ***** **** 840~960: Scer.....: TGAATAATGATATTCAATTGAAAACAGAAGGAGGAAAAAATTCCAAAAACTCGGAAATGAAGATTAACTTAAGACTGGAACAATTCAAAAAGGAGTTGGTATTATATGAGCAGAAAAAAT Spar.....: TGAATAATGACATTCAGTTGAAAGCGGAAGGGGGAAAGAATTCCAAAAACTTGGAAATGAAGATCAATTTAAGACTTGAACAATTCAAAAAGGAGTTGGTATTGTATGAGCAAAAAAAAT Smik.....: TGAACAATGATATGCAGACGAAAGTGGAAGCAGGAAAAAACTCTAAAAGCTTGGAAATGAAGATCAACTTGAGACTGGAACAAt.................................... Sbay.....: TGAATAATGACATGGAGTCGAAAGTGAAAGAAGTAAAAAACTCCAATAACTCGGAGATGAAGATTAACTTGAGACTGGAACAATTCAAAAAGGAATTAGTACTATATGAGCAAAACAAAT consensus: **** ***** ** * **** *** * *** ** ** ** * ** *** ******** ** ** ***** ***************** ** *** * ******** ** **** Spar_spli: DDDDDD 960~1080: Scer.....: TTAAAGAATATGGTATGAAAATTGACGAAATTACGAAAGAAAATAAAAAATTGGCTAATGAAATTGGGCGATTAAGAGAACGCTGGGACAGCTTAGTAGAAAGTGCGAAGCAAAGAAGGG Spar.....: TCAAAGAATACGGCATGAAGATTGACCAAGTTACGAAAGAGAACAGAAAATTGGCCAATGAAATTGGACGATTGAGGGAGCGCTGGGACAGCTTAGTAGAAAGTGCGAAGCAAAGGAGGG Sbay.....: TCAAGGAATACGGCATGAAAATTGATCAAGTTGCAAAAGAGAATAAAAAACTATCTAATGAAATTGGGAGATTGAGAGAACGTTGGGATAGTTTAGTAGAAAGCGCTAAACAACGAAGGG consensus: * ** ***** ** ***** ***** ** ** * ***** ** * **** * * *********** **** ** ** ** ***** ** *********** ** ** *** * **** Scer_spli: DDDDDD 1080~1200: Scer.....: ATAAGCAAAAAAACTAGacgaataaggtaatttcttttcaagatacgaagtatcgtcttttaacttagttggagtatgtgattgctgctcttctactgcgaatgccgcttacctggaggc Spar.....: ATAAGCAACAAAACTAGgcgaataacgtaatgtc-------------gagcac--tctttgaacttagttagggcgtgtggtttctacctctgtgctatcaatacggcttacttggaggc Sbay.....: ATAAACAACGAGATTAAacggatagtttg----------------caaagca-------ttgattgggtacggat-----ctcaccgtacgactgcgatatgcataattcctttcgatgt consensus: **** *** * * ** ** *** * ** * * * * ** * * * * * * * ** * Scer_spli: DDDDDD 1200~1320: Scer.....: atagggcacatatatcaaa--ccctccagaattgaattttgccctg--aggctgcttgaagattgtcaaataaagattcggtcaaaaagaggatgatataaacttgggt--ggaccat-c Spar.....: atggcacacaaatgtcatatgttctctgaagttgaattttgctgaggaagcccgttcaagcgttgtcaggt-acgattcaatc-aagagtagataatactaacttatatacagaccacac Sbay.....: aaaaaacacttatgtttc---tacgcaacatctctgtggtgacatttaagagttccgcctaaacgctggttcaag-tacggctgaaattctaa--gtactagtgtggat--agatcgtcc consensus: * *** ** * * * * * * ** ** * * * * * * ** * ** * * * ** * * Spar_spli: BBBBBBB 1320~1440: total....: ====== Scer.....: ggggtgttaactgaaacggaatcaaggatgcattcatatatatatctatatatatatatatgtgtgtatatgtgtatgtgtgtgtgtgtgtgtgtgtgtaatatgatatatatcttctac Spar.....: gaggtgttaactgaaacggaaatgaggatgcattcgtatatatatatatatatatatgtgtgtgtgta----------tgtgtatgtgtgtatgtgcgtaatataa--tatatcttctgc Sbay.....: aggcgcttgg--aaaacaaaataacggatgcattcgtataaacatatatattaataatctactatgt---------tctacgtgaataaatgaaaatatca-atcttttgaaactaaagc consensus: * ** **** ** ********** **** * ** ***** *** * *** * ** * * * * ** * * ** * Scer_spli: DDDDDD Spar_spli: DDDDDDDDDDDDDDDDDDDDDD DDDDDD 1440~1551: Scer.....: ctgaataaatgaaatatgatccttccgaaaccaaaactgaagcaaatgg-------tgt-taagatgagtaag-------------------------------------- Spar.....: ttgaataaatgaaatatgatccttctgaaactaaaaccgaagtaaatggagatatcttc-caagctgcaaaaatttgtaaaatcgaagacgagagtgtcggaatgaggatt Sbay.....: caaagtaaaaaagagat-atcttttcaagttgtatatttataacattaaatttgagggcatgagggtagaaa--------------------------------------- consensus: * **** * * ** *** ** * * * * * * ** ** { alias......: ['SMD2'] chromosome.: 12 description: U1 snRNP protein of the Sm class end........: 694800 exons......: [(1, 5), (96, 423)] gene.......: SMD2 introns....: [(6, 95)] length.....: 423 name.......: YLR275W plength....: 141 start......: 694378 tdist......: 383372 type.......: ORF up.........: 1 } Scer: 3 donors and 1 branches Spar: 4 donors and 1 branches Smik: 0 donors and 0 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 560), ('Spar', 560), ('Sbay', 560)] ->[('Scer', 46), ('Spar', 46)] ->[('Spar', 988), ('Sbay', 988)] ->[('Spar', 1191), ('Sbay', 1191)] ->[('Sbay', 926)] ->[('Sbay', 1169)] ->[('Scer', 445)] ] [ ->[('Scer', 619), ('Spar', 619), ('Sbay', 619)] ->[('Sbay', 1224)] ] 0~120: Scer.....: caacaataaagtcttagcttgacgccttt------tctacttgtttgcatgtaatga-atctaaaaa----attcgctacaaatacttcattattatattt---------ctatataaat Spar.....: taacaatgaaatcgcccctcaa-gctttt------tctgcttgtttgcatgtaataa-atctgaaaa----ttttcct--ggctactttattatcatattttaaatatttctacataagt Sbay.....: taataccagaatcatttctttaacttcttcatatgtttcttaatttccatgtaataatatctaaactttccattttttcttgcgtctttacccctgtattatatacatctctatataagc consensus: ** * * ** ** * ** * * * *** ******** * **** ** ** * *** * **** *** **** Scer_spli: DDDDDD Spar_spli: DDDDDD 120~240: Scer.....: tctgtaaacgaaattatactttt---tgaggtttcatctgcgtctcatattctttttgta------taataaacgcacagacttgatatgaccgtcaatcaaaataattcaaagcttctt Spar.....: tctggaagcaaagttgtattttt---tgaggttttacctgcatctcatattctttttgtaacgcagctataaacgtatacatcggat---actatctatcaggatattttaaaccttttt Sbay.....: tctggaaacggagacgttttttcatataagggtatattataatttcgtgtccttagca-ataagactacaaaacgtatctattgaggagcacaatctgccggaatattcagacgcctact consensus: **** ** * * * *** * *** * * * ** * * *** * ***** * * ** ** * *** * * * * * 240~360: Scer.....: aaaaaagaaattgaaatcaaagacatacgaaaga-----aattagaaaata--------gaggtcgatttacca--ctgaacaa-----tccta-cagtacatgagctctt-----gaag Spar.....: gcaaaacagagaaaaagcaaagatatg----aga-----agtta-aaagta--------ctggccaatttacaaatttgagggaaggtttttta-aaatacataggctcttcactcgaag Sbay.....: cagggaaaatttaaagatatatagggctactagatatacagctactggatattcagcttctggtcaatatatag--gtgtttaacttgtttttatcaagatattatacttttcattgaag consensus: * * ** * * * *** * ** ** ** * ** ** ** * * ** * * ** ** **** 360~480: Scer.....: tgactttatggggaccaatttgtcctatcgtgata-ttactacgggtaat----actaccaaatgaaaattatcttactcaaaaggtatgacaagaacatcatcactagaacatcatcat Spar.....: tgaccttatagg-accgacttgttttactacagtacttatggcgggtaatgaatactttcaaatgaaaaatatctaacctgaaaggcatgacaagagcatcattactttaacatcatcac Sbay.....: tagccatatacaaagtaaag-gcattacattggc--ctactccgggtaatggtaaccgctagaagaaaaatatttagttcaagaagcacgagcagact-------------catcattac consensus: * * *** * * * ** ** ******** ** * * ***** *** * * * * * ** *** ****** * Scer_spli: DDDDDD 480~600: Scer.....: tcttaatagcaagcgccatcacgtttgccccgcctttgacagttgattagaggagtattataaaaccgttttatcATGTCGTATGTTTG-ATCTTAACCATTT--TTACATCCTATAATT Spar.....: gtttagcggcaagtgtca-cacgcttacgccacctttgacagttgattagaggagtgttataacaccagtctattatgtcgtatgtttg-atcttaaactttt--ttgcacgccataatt Sbay.....: gttaaaccgcatgcttca-tgcattt-tattgc-ttcgagattgagctagagaaacgatccaataccagcctactatgtcgtatgttaacgttttttttattcactcgcatttgtaaatc consensus: * * *** * ** * ** * ** ** * * ***** * * ** *** ** ************ * ** ** * ** *** Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD known....: >======================================= 600~720: Scer.....: TGGAGTGAATTT--TTATATACTAACTT-AAAAGTAATTGAT-TTGTATCTTTCCAGTTCACAAATAATTGATCGTCCAAAACATGAACTCTCTAGAGCAGAATTAGAGGAACTAGAAGA Spar.....: tggagtgaacttcattttatactaactttaaaagtcattgat-ttatatctttccagttcacagttaattgaccgtccgaagcatgagctctctagagcagaattagaggaactagaaga Sbay.....: tcgagtcattttcaccgtttactaacttcaagaatctacaatattttatctttccagttcacaactattagaccgtccaaagcatgagctttccaaagcagaattagaggaattagaaga consensus: * **** * ** * ********* ** * * ** ** ***************** ** * ** ***** ** ***** ** ** * **************** ******* Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =======================================================>= 720~840: Scer.....: ATTTGAATTCAAACATGGTCCAATGTCCCTGATAAATGATGCTATGGTGACAAGAACACCTGTGATAATCTCATTAAGAAACAATCATAAAATAATAGCGAGAGTGAAAGCTTTCGACAG Spar.....: attcgaattcaagcatggcccaATGTCCTTGATAAATGATGCTATGATGACGAAAACACCTGTGATAATCTCATTAAGAAATAATCATAAAATAATAGCGAGAGTAAAAGCCTTCGACAG Sbay.....: gtttgaatttaagcatggtccaATGTCCCTCATAAATGATGCCATGATAACGAAAATACCTGTAATTATCTCATTAAGAAATAATCATAAAATAATAGCAAGAGTAAAAGCCTTTGACAG consensus: ** ***** ** ***** ********* * *********** *** * ** * ** ****** ** ************** ***************** ***** ***** ** ***** 840~960: Scer.....: GCATTGTAATATGGTTTTAGAAAATGTGAAGGAGCTTTGGACAGAGAAGAAGGGCAAAAATGTAATTAATCGGGAAAGATTCATAAGTAAACTATTCTTAAGAGGTGATTCAGTTATCGT Spar.....: GCATTGCAACATGGTTTTAGAAAATGTGAAGGAACTTTGGACAGAGAAGAAGGGCAAAAATGTGATTAATCGTGAAAGATTCATAAGTAAATTATTTTTAAGAGGCGATTCAGTTATCGT Sbay.....: ACATTGCAATATGGTTCTAGAGAACGTCAAGGAGCTTTGGACAGAGAAAAAGGGTAAAAGTGTAATAAATCGTGAAAGATTTATAAGTAAGTTGTTTTTAAGAGGCGATTCTGTCATCGT consensus: ***** ** ****** **** ** ** ***** ************** ***** **** *** ** ***** ******** ******** * ** ******** ***** ** ***** Sbay_spli: DDDDDD 960~1080: Scer.....: TGTGTTAAAAACCCCTGTTGAGTAAaaagtaagacaagcagccctcaatcaacaag--gaaagcaaatcatcgtaagaaactttacagtc--agcggaaagcctttttttattttggaag Spar.....: TGTGTTAAAGACCCCTGTTGAGTAAaaagtatgacaagaagccttta-ttaaatag--gagagcaaatcatcgtacgaaattttccagtgcaaacagaaagacgttttt----ttggaag Sbay.....: TGTATTGAAGACCCCTGTTGAGTAAcaagtatgacaaataattcgcaatcaacatgacgaaagcaaa-cttcctacggatttctccagtt--aacagaaaggtcacttt----ttggaaa consensus: *** ** ** *************** ***** ***** * * * ** * ** ****** * ** ** * * * * **** * * ***** *** ****** Spar_spli: DDDDDD Sbay_spli: DDDDDD 1080~1200: Scer.....: taagaccaattattattggc-tgattttctagc-tcttgcgaaagtattatattcaagaaaac--gaataaagcatctatatt-atcacatttaactaaagagcatttttaataagtaga Spar.....: tagggccaattaatactggc-ccggtttttagc-tctaacgagagtactgtattcaagaaagc--ggataaagcat-tatac--atcacgtttaactgaagagcatttttagtacgtaga Sbay.....: ca---ccaattactattgacctggtttctttgcatttagcgcaagtattgtatccgaggaaagcaaaagaaagcatttatatatatcacgttcgtctaaagagcatttttggtatgtaga consensus: * ******* ** ** * ** * ** * * ** **** * *** * ** ** * ******* **** ***** ** ** ************ ** ***** Spar_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 1200~1241: Scer.....: tttttacataaaatatagaataaatatcaatattattaa-- Spar.....: tttttgtgtaaaatatagaataaatatcaatattattaaaa Sbay.....: tttttgtataacatataaaataattactaatattaatataa consensus: ***** *** ***** ***** ** ******* ** Sbay_spli: BBBBBBB { alias......: ['RPS30A'] chromosome.: 12 description: Ribosomal protein S30A end........: 713158 exons......: [(1, 3), (434, 622)] gene.......: RPS30A introns....: [(4, 433)] length.....: 622 name.......: YLR287C-A plength....: 207 start......: 712537 tdist......: 365014 type.......: ORF up.........: 0 } Scer: 3 donors and 3 branches Spar: 4 donors and 4 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 232), ('Spar', 232)] ->[('Scer', 324), ('Spar', 324)] ->[('Scer', 1101), ('Spar', 1101)] ->[('Spar', 796)] ] [ ->[('Scer', 133), ('Spar', 133)] ->[('Scer', 715), ('Spar', 715)] ->[('Scer', 952), ('Spar', 952)] ->[('Spar', 30)] ] 0~120: Scer.....: accctacagcggtacatttctttgctacgttgctaaggaaactctttaaatctgacatggctgagaactgcagagttgcagagttgcagactatcacatccgtacatatgtataaaaaaa Spar.....: gctccacagcggtacatatcctggctacattgctaacggtg-tcttaaattttaacatgactaggtgctgcaga-------agatagagacgactacacccgtacatct---tataaaaa consensus: * * ************ ** * ***** ******* * **** ** * * ***** ** * ******* ** * **** * *** ******** * ** ***** Spar_spli: BBBBBBB 120~240: Scer.....: tccgtgctttacatactaactgcttttcttttttccgttcgaaaaaaaaaaatgtcgtgaggttgtcggaaacctcagaaaaaatagatagaacaaaacagccttacgaacggtatgttg Spar.....: cccgtgctttacaaactaacagtttttccctttt--gttcga---gaaaaaatgtcgaaaagttgtcggaaacttcaggaaacggagataga-----acagccttacgaacggtatgttg consensus: ************ ****** * ***** **** ****** *********** * ************ **** *** ******* *********************** Scer_spli: BBBBBBB DDDDDD Spar_spli: BBBBBBB DDDDDD 240~360: Scer.....: cattttaaaggctacatgaactgcacattaaatttgccactgtaataatcttccatatccccatacaaaaactacgcaaatATGGTACGTAATGCCTCATTAGGATTTTAAAATATGAAA Spar.....: tattttaaagtgtatatgaactgcatactggatttgccactagaataatcttctatttcaccatacaaaaactacgcaaaaatggtacgtaacagctcaatatatccttaaaatatgaag consensus: ********* ** ********** * * ********** ********** ** ** ******************** *********** **** ** ************ Scer_spli: DDDDDD Spar_spli: DDDDDD known....: >=================================== 360~480: Scer.....: AAAATGGACGTTTCAGCGAGGAATGAATAACAAGAAATAGCTAATTTGAATATATTACTGGTGTTTCATATCTATATATACCGCAGAAAAAGAAATAAAACGCAATATATCTTTAAACTG Spar.....: gaaatggacgtttcagcgaggagtgg-----aagaagtaactaatttggatttatcaccggtgttccatatatatttttac--taggaaagggaatgaagcccagtatatccttgaacta consensus: ********************* ** ***** ** ******** ** *** ** ****** ***** *** * *** ** *** * *** ** * ** ****** ** **** known....: ======================================================================================================================== 480~600: Scer.....: GCTCCA-CCCTGAGAATATGATAGGAAACTTTTTAAATTTGAGTTCTGTTACATCAAAAACGTAATTGCTTGACACAGATTTTTCGAGGGCAACAGCGTGGACTTA--ACATAATGTCGA Spar.....: gctctagcccagaaagcgtggt-cgaattattttaagaaggaatttagtgacaatgaagagtcaacagcttaatacagattttt-gagggaaacatcatggatttaagagaaaatgtcaa consensus: **** * *** ** * ** * *** ****** ** ** ** *** ** * ** **** * ********** ***** **** * **** *** * * ****** * known....: ======================================================================================================================== 600~720: Scer.....: GTTTAATAACAACATTTTTTGACGGAGAGTTAAAAAGGC-TTTGAGAAAATAGCAGAGTGAAG--TTTATTTTTAGCATCCTTGCTGATACGCCAAATAATTCAAAAATTCACTATACTA Spar.....: ttttaattgtagcat--tttgatggagagttggaaatacttttgaaaaaacagcaggggaaagacttcttttatagcatcctcgctgatacgtcgaatagttt-ATGATACACTATACTA consensus: ****** * *** ***** ******** *** * ***** **** ***** * *** ** *** ********* ********* * **** ** * ** ********** Scer_spli: BBBBB Spar_spli: BBBBB known....: ======================================================================================================================== 720~840: Scer.....: ACATGGTCATTAATTTTTAATATTAATATTATTTATTTAGGCTAAAGTTCATGGTTCTCTAGCTCGTGCTGGTAAAGTCAAGTCTCAAACACCAAAGGTTGAAAAAACCGAAAAGCCAAA Spar.....: ACATGTTTATTAA-TTTTAATATTAATA-TGTTTATTCAGGCTAAAGTTCACGGTTCTCTAGCTCGTGCTGGTAAAGTTAAGTCTCAAACCCCAAAGGTTGAAAAAACCGAAAAGCCAAA consensus: ***** * ***** ************** * ****** ************* ************************** *********** ***************************** Scer_spli: BB Spar_spli: BB DDDDDD known....: ======================================>= 840~960: Scer.....: GAAGCCTAAGGGTCGTGCTTACAAAAGATTATTGTACACCAGAAGATTCGTTAACGTTACCTTGGTTAACGGTAAGAGAAGAATGAACCCAGGTCCATCCGTCCAATAAgaaaattaaca Spar.....: GAAGCCTAAGGGTCGTGCTTACAAGAGATTATTGTACACCAGAAGATTTGTCAACGTCACCTTGGTTAATGGTAAGAGAAGAATGAACCCAGGTCCATCTGTCCAATAAgtaaattaacg consensus: ************************ *********************** ** ***** *********** ***************************** ********** ******** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 960~1080: Scer.....: gttgtggaaaaggagcttaaaagtaacaagaaacaaaatagcag--tcatgccatctttacttcaagatagtttttgacttgtatttgtatttccgttatgcgttttttactttaaatat Spar.....: attgtaggaaaggagcttaaaagtaacgagaaacaaaacaacagtctcacgctatctttttttgaagataatttttgattagtatttgtatttcggttatgcgttttttaatttaaatat consensus: **** * ******************* ********** * *** *** ** ****** ** ****** ******* * ************* *************** ********* 1080~1200: Scer.....: aaagca--gtattgaaattatgtaagtagtgttaactataaattatttctttaggactttaacttcgcaaaattatgctattcatattatcgatttacttctttgctgtc--ttggtgtg Spar.....: aaagcaatgtattgaaattatgtaagtagtgttaactattaattatttctttagaactttaattcagtaa---tataccactcatg--attggtttgctcatctgtagtcttttgtcgtg consensus: ****** ******************************* ************** ******* * * ** *** * * **** ** * *** ** * ** *** *** *** Scer_spli: DDDDDD Spar_spli: DDDDDD 1200~1320: Scer.....: atgcttttattaataaggaggatcttgccgtacctagggtt-ggcaaacgtttttctagttgtttttgaatgggcgcttcataatgtggcaatgaaaaaaaaaaaactagaaaaaa---a Spar.....: atacttttacta------------------tactcagggttaggcaaacgtttttctaactgtttttgact-agcgcttcataatatggcaatgaaaaaaaaagaaaaagaaaaaaaata consensus: ** ****** ** *** ****** **************** ********* * ************ ***************** ** ******** * 1320~1439: Scer.....: ctgcaatgatcttgacgatgacatgaagcctccttttaacaaaatccattgaggtcaacaagcatcaccagagacgcctattataaact--ttataagagaaataccagttatacaata Spar.....: ctttaatgatcttgatgatgacatgtagccttcttctaacaaaacgccttgaggctaacaaacatcgccggaaacgtctaccataaaacgactataagggaaatatcaattatacaaaa consensus: ** *********** ********* ***** *** ******** * ****** ***** **** ** ** *** *** ***** ****** ****** ** ******** * { alias......: ['UBC12'] chromosome.: 12 description: Ubiquitin-conjugating enzyme end........: 744851 exons......: [(1, 3), (138, 701)] gene.......: UBC12 introns....: [(4, 137)] length.....: 701 name.......: YLR306W plength....: 233 start......: 744151 tdist......: 333321 type.......: ORF up.........: 1 } Scer: 2 donors and 2 branches Spar: 0 donors and 0 branches Smik: 0 donors and 0 branches Sbay: 2 donors and 2 branches [ ->[('Scer', 297), ('Sbay', 297)] ->[('Sbay', 631)] ->[('Scer', 721)] ] [ ->[('Scer', 355), ('Sbay', 355)] ->[('Sbay', 78)] ->[('Scer', 147)] ] 0~120: Scer.....: ctgcctt-aaacgagtggcgttttcgattgctgtagttatctttttgtgatctaatttttttcttgatttacaatagttattaatgttgaatatgttttttcccacaactcaaacatctt Sbay.....: ctgcctttaaacgagtggtacctccgattcttgttgcactttcttt--------atcctttttgtattcaacaatagttactaatgccaaatatgttttt-cttaaagctcgaacaactc consensus: ******* ********** * ***** *** * * * *** ** **** * * ********** ***** *********** * * * *** **** ** Sbay_spli: BBBBBBB 120~240: Scer.....: cgcagtattcttgaaaaaaaaaaatactattaacgtaccttcatccctgcgcgtgccgtttgatgatatcagccaaaaggtaaaatgagatgaaaaaggccaatca------ttcataaa Sbay.....: cgcagtatttttgaaaaat-----tactacaaatgtactttcagct-tgcccgtgccgtttgatgatttcagccaggaggcatgaatcaaagaaaagaacctttcaagccatttcataaa consensus: ********* ******** ***** ** **** **** * *** **************** ******* *** * * * ***** ** *** ******** Scer_spli: BBBBBBB 240~360: Scer.....: tgtacttagagacattaaagaatcagttagagaatataaaacaagataataaaaATGGTACGTAGATGCAACTATATCTTTCCGTTTCTCATTGGCGGTTTTTAGCGATCGAAAATACTA Sbay.....: -gtcattagggctaccgaaga-tcatcaagtgatcacaaaacaagaggatttcaatggtacgttgatagag----attttgttgcctctc--tgcttttcttttgcttt----gatacta consensus: ** **** * * **** *** ** ** * ********* ** ********** *** * ** ** * **** ** * *** ** * ****** Scer_spli: DDDDDD BBBBB Sbay_spli: DDDDDD BBBBB known....: >============================================================== 360~480: Scer.....: ACATAATCTTTTTGGGGGGTGAGAATGTATATGTGTACTGGATATGTATAT--TCTTGGCTTTATTCAAATAGTTGAAATTACGCCAATTACAAAAGAAAAAGCAAAAAGAAAATGAAAA Sbay.....: acatacacatct-ggagagtgataatgcatatgcgtactaaatatgtatctaactctaactttgtataaatagctgaaattacgccaattacaaaagaaaaaacaaaaagagaatgaaaa consensus: ***** * * * ** * **** **** ***** ***** ******** * * **** * ****** **************************** ******** ******** Scer_spli: BB Sbay_spli: BB known....: =======================================================================>= 480~600: Scer.....: CAGCAGTTCTATTCAGCCTAATTTATCGGCAGCAAGAATTCGTTTGAAAAGGGACCTTGATTCGCTGGACCTCCCACCAACAGTGACTTTGAATGTAATAACATCACCAGATAGTGCGGA Sbay.....: taatgtttccATGCAGCCCTATGTATCGGCAGCTAGGGTTCGATTGGTCAAAGATCTTGATTCTTTGGACCTCCCACCCACAGTAACTTTAAGCATAAAAGCTTCACCGCAAAGCACGGA consensus: * *** ** ***** ** ********** ** **** *** * ** ******** ************* ***** ***** * *** * * ***** * ** **** 600~720: Scer.....: TAGATCACAATCGCCGAAATTGGAGGTAATTGTTAGGCCTGATGAAGGATATTATAATTATGGATCTATTAATTTCAATTTGGATTTTAACGAAGTTTATCCGATTGAACCACCAAAAGT Sbay.....: TAGGATGCAGCCGCCCAAATTGGAAGTGGTTGTAAGTCCCGATGAAGGGTATTATAATCACGGTTCCATCAGTTTCAGCCTGGATTTTAACGAGGTTTATCCAATCGAACCACCAAAAGT consensus: *** ** **** ******** ** **** ** ** ******** ********* * ** ** ** * ***** ************* ******** ** ************** Sbay_spli: DDDDDD 720~840: Scer.....: TGTATGTTTGAAGAAGATCTTTCATCCAAATATCGATTTAAAGGGGAACGTTTGCCTAAATATTCTTCGAGAAGACTGGTCGCCAGCTCTAGATTTGCAGAGTATTATAACCGGGCTTCT Sbay.....: AACATGTTTGAAAAAGATCTTCCATCCAAATATCGACCTAAACGGAAACGTTTGTTTAAATATACTTCGGGAAGATTGGTCACCGGCTCTCGATTTACAGAGTATCATCATCGGGCTTCT consensus: ********* ******** ************** **** ** ******** ******* ***** ***** ***** ** ***** ***** ******** ** * ********* Scer_spli: DDDDDD 840~960: Scer.....: TTTCTTGTTCTTGGAGCCTAATCCCAATGACCCGTTAAACAAGGATGCAGCAAAGTTACTGTGTGAGGGTGAGAAAGAATTTGCTGAAGCTGTGAGATTGACCATGTCTGGAGGTTCAAT Sbay.....: TTTCTTGTTCTTAGAACCTAATCCCAATGATCCCCTAAATAAAGATGCGGCAAAGCTGTTTTGCCAGGACCAAAAAAAATTTGCAGAAACTGTTATATTGGCCATGTCTGGAGGCTCAGT consensus: ************ ** ************** ** **** ** ***** ****** * * ** *** * *** ******* *** **** * **** ************* *** * 960~1080: Scer.....: TGAACATGTCAAATATGATAACATAGTTTCTCCTTGAgtcaagttcagagtaattttcggttgatttgattatatataaacaataaaattatagataattgtgacatactaggcgagttg Sbay.....: CGATCATGTTCTCTATGATGACGTAGTTGCTCATTGAataatttt--------tctgctgtagggt--atagtatacaaataatagaattatagatgggcttggccaagttaacacccta consensus: ** ***** ****** ** ***** *** **** * * ** * * * ** * * ** **** *** **** ********** ** * * * * * 1080~1200: Scer.....: tcgccttggtaacatcttgctaccgccatcttctgttagtttacgccttatgaccaacat----tccttatattctcgtt--caaacttttgtctcgatattttgcaggtacctgtagaa Sbay.....: ttgtctcggcagcctcttacaatgtccacttcctattgtcaacaatcttttgactaataaagtgtatttatttttccattttcataatgccgtttatatgtttttaaattgatttcatat consensus: * * ** ** * * **** * * *** * ** ** *** **** ** * * **** ** * ** ** * * ** * ** **** * * * * * 1200~1320: Scer.....: cttaatgtgttctattcaaaataagtataaaattt-ctggccagtaaaggcaaacaaaacataaagatattaatacgaaaaatttcttgaagaaaacaaaaaatacttcttataataaag Sbay.....: ttttcaagaactatttcaaagtaaacaaatgatatatttgatactgtaagcaaa-acattaaaaaaagattacttc-aaaggcaattcgaagagga-attgtctctttcccataataaca consensus: ** ****** *** * * ** * * * * * * ***** * * * *** * **** * * *** * ***** * * * *** ******* 1320~1440: Scer.....: aaacagcgaagccatggctattg-acaagataatcaggaaggtgagataccctggatagaagactaagagagagcaggaagttgaagaacgcaatctcagctatcgctaattcttacaaa Sbay.....: aaaagccaagaagaagtttattgcgtgaggtggaacatatggcgttatacactaagta----actaaaagagca-agcagattaataaacatcattaca-tcattacgaatatata-ata consensus: *** * * * * ***** ** * * ** * **** ** ** ***** **** ** * ** * *** ** ** ** * *** ** * * 1440~1560: Scer.....: aaataaagatattacaa--ctatggaagaaaaaaatgaatgactatactagttagtaatatttaacaagataacgctttctattttctgt----aaaaaaaattctgtctcatgcacttg Sbay.....: ttaccaatacgacacaaacctacaccatgggcagtgaaaacacctctttcaccgactgctttcaaccaaaagagg--ttctagtttctgttgcaaaagaatcttttctgtcaattatgtg consensus: * ** * **** *** * * ** ** * ** *** * * * * ***** ******* *** ** ** * * *** * ** 1560~1680: Scer.....: gaagcagcttcaacatttctcttttccagatgtcacattttccggaccggccgtcattcaatcgcaattaaaagagaaaaataccaacaagtgggttgatttacttttgtgttttcaaaa Sbay.....: gttacagctttcgga--tccttttgcttaatgtcacattttttccggtcgccgtcattcgaacacaattaaaa---aaaactgccttagtatattttggttc-tttttgtgctta-aaaa consensus: * ****** * ** *** * ************ ********** * * ********* **** * ** * *** ** ******* ** **** 1680~1783: Scer.....: agaccaatagttctaacaaagtagatgcttagaagtaagcaaagtggaatatagagaaacaaaattaagtgatagatttacttttacacaagaaaagag---- Sbay.....: caagtaatgaacttaataaaaaagaaattgaattgtaag---aatcaaagaagtagaaccaactcagatcgaaagctctattccaacaccagaaaaaaaaaaa consensus: * *** *** *** *** * * ***** * * ** * **** *** * ** ** * ** * **** ****** * { alias......: ['MRPL15'] chromosome.: 12 description: Mitochondrial ribosomal protein MRPL15 (YmL15) end........: 760241 exons......: [(1, 28), (183, 859)] gene.......: MRPL15 introns....: [(29, 182)] length.....: 859 name.......: YLR312W-A plength....: 286 start......: 759383 tdist......: 317931 type.......: ORF up.........: 1 } Scer: 1 donors and 1 branches Spar: 0 donors and 1 branches Smik: 3 donors and 1 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 592)] ->[('Smik', 168)] ->[('Smik', 672)] ->[('Smik', 1845)] ] [ ->[('Scer', 1116), ('Spar', 1116)] ->[('Smik', 1436)] ] 0~120: Scer.....: tttaggtccgacaactcgactgttttactagtctctattatcgtcactgcgtattactctgctactgtgcttgttactttataccggaacagtagctcctaaacgattattccaaatgaa Spar.....: tttaggttcgacagctcgatcgttctactagtctttattatcgttactgattgttactttgctactgtgtttgttactttatacctgaacagtagctgctaaacttttgttttaaataaa Smik.....: tctgagttcgacagttcgatttttctactactctttattattgttactgtgtgttactttgctactgtgtttgctactttatacctgaacagcagctcctgaacttttgctttatataaa Sbay.....: ------tttta-ggttcgactgttctactaggttctgatattgttactg--tgttactgtgata-----tcttttactttctacccaaacagaagctttcgcacttttgtcttatataaa consensus: * * **** ** ***** * * *** ** **** * ***** ** ** * ****** **** ***** **** ** ** * ** ** 120~240: Scer.....: gaaaaacg-tttggccagtaacctgcataaaactgaataactataatgata--ctccgactaataatatatcccaat--gccccatctcatc-tgtgtagatcaa-tttttatggctcga Spar.....: gaaaaaaggtttggccagtaacctgcatatatttgaccagctgtgatgatatactccgactaataatatctcccaat--gccccatctcatcgtgtgtagatcaa-tttttatggcttga Smik.....: ggaaaa-gttttgaacagtaacctgcatatatttgatcaactacaatggtatgctccgactaatagtatctcccaaaaagccccatcgcatcatatgtagatcaaattcctatgacttga Sbay.....: taaaat--gcttggccagtaacctgcatatatttgcccagccgtggtgatacgctctgactaattatatctcccaat---gcccatctca---agtgtagatcat-ttactatggcttta consensus: *** *** ************** * ** * * ** ** *** ******* *** ****** ****** ** ********* ** **** ** * Smik_spli: DDDDDD 240~360: Scer.....: tccaggtaccttgataagcagctgtcgcgcaaaggggttaccgcaaaatggatagatggaccgggggcacaccggggtagggggtccggagggttaactgtcaactccacccatacaaga Spar.....: tcctggtaccttgataagcaactgtcgcacaaaggggttaccgcaaaatggacggatgggccgggggtaagccggggtagggggtccggagtgttgactgccaactccacccagacaa-a Smik.....: tccaggtacctagataagcaaacactgcacaaagggggtaccgcaaagtggacggatgggtcggggg-agactggggtagggggtttgtagtgctgactgtcaaattcacccacacaa-a Sbay.....: accaggtaccttgataagcagctgtcacacaaaggggttaccgcaaagtggacggacgg-ccgaggggcgaccgggg----gggtatgggaggttgactgcccactccacccacacaa-a consensus: ** ******* ******** * ******** ********* **** ** ** ** *** * **** **** * * * **** * * * ****** **** * 360~480: Scer.....: ccgcgcagaaatcgtc-gcaggacccc--gccgaacggcga-aagcaaatatgcagccgtaa-agacctaacaataa-acctaatgtagtcatagggctaattgattt-taaatatatga Spar.....: ccgtgcagagaccgtc-gcaggacccc--gccaaacggcga-gagcagatatgcagcaataacagacctaacagtaa-acctgatgggatgatagaccctaaagatttctgattatatga Smik.....: cctcgcagtgagcttccgcaggacccc--gtcaaatagcaataagtaaatatacagcaacgacaaccctaataatga-acattatataactgtagggtctattaaaag-aagagatatga Sbay.....: ccgcgcagagagttgccgcaggaccccccgccaattggcgaaaggtaaatatagaccaaattgtgccctaattacaacacctaccgggtttagagggcttg--aaataattcataaaaga consensus: ** **** * * ********** * * * ** * * * **** * * ***** * ** * ** * * * ** 480~600: Scer.....: cctagctgactattcaagtttgccctaattgatgagtttttgaaaaaaaaaacaacttaggtttcgctatccaagcttatgctATGGGAA-GCGTTGGAAAACTTGCATATAGTATGAAC Spar.....: cctaggaaattattcaacttcgacctagtaggtgggtccttgaaaaaaaaa--aacttagggttcattatcgaaccttATGCTCTGGGAA-GCGTTGGAAAACTTGCATACAGTAAGAAC Smik.....: cctatgaaaatattcaa-tttaccctgatagcgaggcgcttgcaaaaaaaa------tagggttcattgtcgaatcttatgacatgagaa-gtgttggaaaacttacatacatcgtaaac Sbay.....: cctatacaggagtggaa-taaaccctggtggtaggaatcttgaaaaaaaac-cggtttagggttgattgtccaatcttATGCTACGAGAAAGTGTTGGAAAACTTATATACACTATGAAC consensus: **** * ** * *** * * *** ******* **** ** * ** ** ****** * *** * ************ *** * *** Scer_spli: DDDDDD known....: >======= 600~720: Scer.....: AAGAGCGAGATATAAAACTATAACGGT-AGATGGAAAGTAAAGAGTAGACAAGCTCGGAAACATGGAAAATAGCATGATGTTTATATCGCGTTCCTTGCGGAGACCCGTTACTGCTTTGA Spar.....: AAGAGCGAGAGATAAAACTGTAACAGT-AGGTGGAAAGTGCAGAGTAGGAAAGCTCGGAAACACGCAGAATAGCATGATGTTGATATCGCGTTCCTTACGGAGACCCATTGCTGCTTTGA Smik.....: aagaacgtaagataag-ttttaacagttgggtagtaaatacagagtgagaaagctcggaatcacacaga-tagtATGATGTTGGTATCGTATTCCATGAGGAGACCCATTACTGCTTTGA Sbay.....: AGGAGAGGGAAGCTTTGCACTGGCAA--GGTTGGGAGGTATAGAGTGGACAAGCTCGGAAACACACAGAATAGCATGATATCGATATCGGGTTCTTTCAGGAGACCGGTCTCTGCTTTGA consensus: * ** * * * * * * * * * ***** ********** ** * * *** ***** * ***** *** * ******* * ********* Smik_spli: DDDDDD known....: ======================================================================================================================== 720~840: Scer.....: ACTGCAATTTACAAAGCGTTAGAACAGTCATATACCTTCATAAGGGTCCGAGAATTAATGGTTTGAGACGAGATCCAGAGTCGTACTTGAGAAATCCTAGCGGGGTACTCTTTACTGAAG Spar.....: ACTGCAATTTACAGAGCGTTAGAACAGTCATATATCTTCATAAGGGTCCAAGAATTAATGGTTTGAGACGAGATCCAGAGTCGTATTTGAGAAACCCCAGCGGTGTACTCTTTACTGAAG Smik.....: ACTGCAACTTGCAGAGTGTTAGGACGGTCATATATCTTCATAAGGGTCCAAGAATAAATGGTGTGAGACGAGATCCAGAGTCATATCTGAGAAATCCTAGCGGAATACTCTTCACTGAAG Sbay.....: ACTGTAATTTCCAAAGCATTCGATCGGTTATATATCTTCATAAGGGTCCAAGGATTAATGGTTTGAGACGAGATCCAGAGTCGTATTTGAGGAACCCTAGTGGGGTTCTTTTCACCGAAA consensus: **** ** ** ** ** ** * * ** ***** ************** ** ** ****** ******************* ** **** ** ** ** ** * ** ** ** *** known....: =========================>= 840~960: Scer.....: TTAACGCAAAAGAGTGTCAAGACAAAGTTAGATCCATACTACAATTGCCCAAGTACGGAATAAATTTATCAAACGAACTGATTTTGCAGTGTTTAACACATAAGTCGTTCGCACACGGGT Spar.....: TCCAAGAAAAGGAATGCCAAGACAAGGTCAGATCCATACTGCAATTGCCCAAGTACGGAATAGACTTATCAAACGAACTTATTTTGCAGTGTTTAACACATAAGTCGTTCGCACACGGGT Smik.....: TGCAAGCAAATGAGTACCAAGATAAAGTCAGGTCTATACTACAATTGCCTAAGTACGGAATAAAACTATCAAACGAACTGATTTTGCAGTGCTTAACACATAAATCGTTCGCACACGGCT Sbay.....: TCCAGGCAAATGAATGCCAGGATAAGGTCAGATCCATACTACAATTACCCAAGTACGGAATAAATTTATCTAACGAGCTGATTTTGCAATGCTTAACTCATAAATCGTTTGCACACGGCT consensus: * * * *** ** * ** ** ** ** ** ** ***** ***** ** ************ * **** ***** ** ******** ** ***** ***** ***** ******** * 960~1080: Scer.....: CAAAGCCATACAACGAAAAACTGAATCTGCTAGGAGCACAGTTTTTGAAACTACAGACGTGCATTCATTCGTTAAAGAATGGTTCGCCGGCCGAGAGTTGCGAGAACGGGCAACTTTCTT Spar.....: CAAAGCCATACAACGAAAAACTGAATCTACTAGGAGCACAGTTTTTGAAATTACAGACATGCATCCATTCGTTAAAAAATGGTTCGCCGGTCGAAAGTCGCGAGAATGGGCAACTTTCTT Smik.....: CAAAGCCGTATAATGAAAAACTGAACCTGCTAGGAGCACAGTTTTTAAAATTGGAAACATCCATCCATTCAGTAAAAAATGATTCACCGCTGGAAGCCCGCGAGAACGGACCACTTTCCT Sbay.....: CCAAGCCGTATAATGAAAAACTGAGTTTGCTAGGCTCACAGTTTTTGAAACTGCAAACATCTATTCATTCTTTGCGAAACGATTCGCCCACGGAAACCCGCGAGAATGGACCACTTTCCT consensus: * ***** ** ** ********** * ***** ********** *** * * ** * ** ***** * ** * *** ** ** ******* ** * ****** * 1080~1200: Scer.....: TGCAGTTCAGCAATCTGGGAACAAAATTCGCTAAGGAATTAACGTCCAAAAACACAGCATGCACATTCGTTAAATTACATAATCTAGACCCTTTCATATTTTGGAAGATGAGAGACCCAA Spar.....: TGCAGTTCAGCAATCTGGGAACGAAATTTGCTAAGGAATTAACGTCCAAAAACACAGCATGCGCATTCATTAAATCACATAATCTGAGCCCTTTCATATTTTGGAAAATGAGGGACCCAA Smik.....: TGAAGTTTAGCAATTTAGGAACAAATTTCGCTAAGGAATTAGCGTCCAAGAACACAGCATGCACATTCATTAAATCACATAAACTTGGTCCCTTCATATTCTGGAAAATGAGAGACCCAT Sbay.....: TACAATTCAGTAATCTGGGGACAAAAATCGCCAAGGAATTGACGTCCAAAAAGACAGCATCGGCGTTCATCAAATCACACAATCTGAGCCCTTTCATATTCTGGAAAATGAAAGATCCCT consensus: * * ** ** *** * ** ** ** * ** ******** ******* ** ******* * *** * **** *** ** ** ** ******** ***** **** ** ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 1200~1320: Scer.....: TAAAAGATGGCCACATAAATGGTGAAACCACGATTTTTGCTAGTGTCTTGAACGCATTTATTGGTGCAATTCTGTCAACGAATGGATCTGAAAAAGCAGCTAAATTTATCCAAGGAAGTT Spar.....: TAAAAGATGGGCATATAAATGGTGAAACTACGATTTTTGCCAGTGTTTTGAACGCATTCATTGGTGCAATTCTGTCGACGAACGGGTCTGAAAAAGCTTCTGAATTTATCAAAGGAAGTT Smik.....: TAAAAGACAGCCATATAAACGGAGAAACCACGATTTTTGCCAGTGTTTTAAACGCATTCATCGGTGCAATTCTGACGACAAATGGGCCTGAAAAGGCCTCCTTATTTATCAAAGAAAGCT Sbay.....: TGAAAGACGGCCAAATAAATGGTGAAACTACGATATTTGCCAGTGTCTTAAATGCATTCATTGGCGCAATTTTATCCACTAATGGTTCCGAAAAGGCTTCTAAATTCATCGATGGAAGTT consensus: * ***** * ** ***** ** ***** ***** ***** ***** ** ** ***** ** ** ****** * * ** ** ** * ***** ** * *** *** * * *** * 1320~1440: Scer.....: TGCTGGATAAAGAAGATCTTCATTCCTTGGTTAACATTGCTAATGAAAATGTAGCATCTGCAAAGGCAAAAATATCC------GACAAGGAAAATAAAGCATTTCTGTGAagatacaa-- Spar.....: TGCTAGATAAAGAAGATCTTCATTCGTTGGTTAGCATTGCTAATGAAAATGTAGCATCTGCAAAGACAAGAATATCC------GACAAGGAAAAGACAGCACCTCTGTAAagaa--ag-- Smik.....: TGCTGGATAAGGGAGATCTTCATTCGTTAGTCAACATTGCCAGTGAAAATACGGCTTCTGCAAAAACATCAATACCA------AACAAGGAGAACAAAGCATCTCTGTAGagaaataatt Sbay.....: TGCTGGATAAGGGAGACCTCCATTCGTTGACCAACATTGCTAATGAGAATGTTGCATCTACAAAGACAACGATACCGATGAAGGAAAAGGAAAATAAAGCCACCCTGTAGagaagaagac consensus: **** ***** * *** ** ***** ** * ****** * *** *** ** *** **** ** *** * * ***** ** * *** **** *** * Smik_spli: BBBB 1440~1560: Scer.....: ---------------aaaatatagttgatggttcactggccaaaaatgtataaaagaaaaatttatctgtaaatagtgatcga-aa-taaaataa-gataataactaaagaatatatatg Spar.....: ---------------aaaatataattgatggctcactggccaaaaatgtataaaagaaaactttatctgtaaatagtgatcaa-aaataaaataa-gatagtaactaaagaacatatatg Smik.....: aaca-----------ataatattgttgatggcttaccagccggagatgtataaatgaac-ctttatctgtaaatagtgatcag-taataaaataaagatttttccttaagaatatatatg Sbay.....: aacctgtctctttgttttatatagttcatagtacactggccagaaatgtataaagaa---ttttatctgtaaataacgatcaagaaataaaataaagatagtgactaaaga--atatatg consensus: **** ** ** * ** *** * ********* * ************** **** * ******** *** * ** **** ******* Smik_spli: BBB 1560~1680: Scer.....: actttactgtacagatctataattgaaaaatgacgagaggtcctgtgaaagagtctgcctgttcgccatcttcacacattcaaccaattccctggtgcgcttggttacttccatcaggat Spar.....: gctttactgtacagatctataattgaatgatgatgagaagtt------------------------------------------------------------------------------ Smik.....: aaattactatacaaattcattattaagtaatgatga-aggttctacggacgctttcgctcatttgccagctctacagatttaatgaatttcttggcacacttactcacgtcaaacatgat Sbay.....: actctactgtacagttttatagtatcttcttttataaactagcgatt------------------------------------------------------------------------- consensus: **** **** * ** * * * * 1680~1800: Scer.....: atctgctaatttttgatagaatcgtttcttcccaagctttgtggaatcgcatccataagtacacaattccgataacttttgcgagcaatctgtgagcctttcaataatttctttacagtg Smik.....: gcctactggttcttgataggattgt-------------------------gtccataagcatacgactctgataatctttataaacaatctgcgagtccttcaacagtctctttatagtg 1800~1920: Scer.....: ctcgcctaaatccagtttaaaacttttttggaccattgctttggtagtcatatcaatcaccgattccaaaataggaataatctcgatggaattttgacataatctcgaaactgatcttgc Smik.....: ----------tcttgtttagaattgtcctgatccattaccttggtgtacgtgtcaactattgatcccaacagggacttgattttcatgaacgcttgaaacaggcttggaatcgatcttac Smik_spli: DDDDDD 1920~2019: Scer.....: ggacttgaacaattttgatttagaggcttgaacatcat------------------------------------------------------------- Smik.....: agtattgaacgttttcgttttggaatcttta-catagtacctacaactttctgcaccatggaaatgacatccgttgtgttacttaaaaaaaagtcgaga { alias......: ['TAD3'] chromosome.: 12 description: tRNA-specific adenosine-34 deaminase subunit Tad3p end........: 766358 exons......: [(1, 109), (178, 229), (286, 1093)] gene.......: TAD3 introns....: [(110, 177), (230, 285)] length.....: 1093 name.......: YLR316C plength....: 364 start......: 765266 tdist......: 311814 type.......: ORF up.........: 0 } Scer: 3 donors and 4 branches Spar: 5 donors and 2 branches Smik: 2 donors and 1 branches Sbay: 4 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 307), ('Spar', 307), ('Spar', 302), ('Sbay', 307)] ->[('Scer', 438), ('Spar', 438), ('Smik', 438), ('Sbay', 438)] ->[('Smik', 1307), ('Sbay', 1307)] ->[('Sbay', 971)] ->[('Scer', 677)] ->[('Spar', 191)] ->[('Spar', 846)] ] [ ->[('Scer', 348), ('Scer', 344), ('Spar', 348), ('Sbay', 348)] ->[('Scer', 485), ('Spar', 485), ('Smik', 485), ('Sbay', 485)] ->[('Scer', 1194)] ] 0~120: Scer.....: gagtataaatcagtttttttttttttttttttttttttaatttttcacttttctatttcacttgtgtcattcattgccatgctttactttttttc--attcctaaatgcgaatcaccaat Spar.....: ----------acgtataattactcaaatttttttttttagtttttcactttttcacttcactagtg----ccattgccatgatttcttttttctctttttttttaatgcgaatcatcaat Sbay.....: ----------acgtgtaactggaagtaatcccttttct-ttttagctttttcacgttttacttat--------ttgcaattttttttttccttc---ttttcttgttacgaatcaataat consensus: ** * * * **** * *** * *** ** *** * **** ** *** ** * ** * * ******* *** 120~240: Scer.....: agctcatc-taaaggtatatattattcaaacc------------tcagaaggataatattcatgagggcgtgttagttATGGTTAAGAAAGTTAATAATCCGCTAAAAATCGATTATCAG Spar.....: agctcatc-tggaagtatatatcattcgacat------------tctgaaggactgtattcatttgggcgtgttcgttatggttaaaaaagttaataatccgctaaaaatcgattatcag Sbay.....: atctcatcacttcagtaggtctcagtcaaagcaaagaaaagtggtgagaacaagagtaattgtaactttgtgattattatggtcaagaaggcaaacaatccgttaaagatcgactataag consensus: * ****** *** * * * ** * * *** * ** * * *** * ******* ** ** * ** ****** **** ***** *** ** Spar_spli: DDDDDD 240~360: total....: ====== =========== Scer.....: AACGGGATAATAGAAAATCGGCTTCTGCAAATTAGAAATTTCAAAGATGTAAATACGCCCAAACTAAGTATGTATCTATGAGATCTAACAGAAATCAGGA--TCAATTAACTAACTTTCA Spar.....: aacggaataatagaagatcgacttctgcaaattagaaattttaaagatgtaaatacacccaagttaagtatgtatttatgaaatccaacggaatttacgatttcgagtaactaacttcca Sbay.....: aacgggataatagaggatcggcttttgcagattcgaaattttaaagatgtaaatacgcccaaattaagtatgtattttgaataaccaacagaaattgagc--tttagtaactaactttcg consensus: ***** ******** **** *** **** *** ******* ************** ***** *********** * * * * *** *** * * * * ********** * Scer_spli: DDDDDD BBBBBBBBBBB Spar_spli: DDDDDDDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >==================================================== 360~480: total....: ====== Scer.....: AACATATATAA---------GTGCAGTCAATGTATGGAGTATAAGAATAGATCCAAGAGACTCGAAGAAAGTAATAGAGTATGT---A------TATGATTTTTGCTTTTGTATTCATGG Spar.....: aacgtatatac---------gtgcagtcaatgtgtggagtatggtaatagagccaagagactcaaagaaagtaattgagtatgtaaaa------tgttttttttgttttagtatttattg Smik.....: ....................................gggcatagaaatagagccaagagaatcaaagaaagtaatcgagtatgtgaaa------tgtaaatttt---tttgtatctatgg Sbay.....: gatatatacacgtatacattgtgcagtcacggtatggagtatagaaatagagccaagggactcgaaaaaagtgatagagtatgtaccgttttctttttttttttcttttcgtatcaattg consensus: * **** * ********* ** *** * ** ****** ***** ** ** ** ***** ** ******** * * **** ** **** ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: ========================>= >========================================= 480~600: total....: ======= Scer.....: AAGTAAACTAACTAGTAAAGTAGGCTAATTCGAAACGATTTTCAGAAAAATGACCCTGTTTCATTGAGACATTTGAAAAGGATCCGCAAGGACATCGAGACCTCCACCTTGGAAGTGGTG Spar.....: aagtaaactaactagtaaagtaggctaattcgaaacgattttcagaaaaatgatcctatttcattgaaacacttgaaaaggatccgcaaaaacgtcgagacttctacgttggaagtggtg Smik.....: aagcaaactaactaataaaataggctaattcggagcgactttcagaaaaacgaccctatctcattgaggcatttaaaaaggatccgcaaaaacgttcgaacttcgacgctggaagtggtg Sbay.....: aagtaaactaactagtagagtaggctaattcggaacgatttccagataaatgatcctgtttcactgaagcacctgaaaagaatccgcaagaatgtggagagctccacgttggaagtggta consensus: *** ********** ** * ************ * *** ** **** *** ** *** * *** *** ** * ***** ******** * * * ** ** ********** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: =====================>= 600~720: Scer.....: TTGTGTTCGAAAGAGTATATTTGCGACGAAGGTGAAATAAACAATAAATTGAAGAGTATTTGGGTTGGAACGAAAAAGTATGAACTGAGTGATGATATCGAAGTGCCTGAGTTTGCGCCC Spar.....: ctgtgttcgaaagagtacattcgtcacgaaaacgaaATGGACAATAAATTGAAGAGCATTTGGATTGGAGCAAAAAAATATCAACTGAGGGATGAGATCAAGGTGCCAGAGTTTGCGCCT Smik.....: ttgtgttccagagaatacatttctgacaaggatgacATGGACAAGAAATTGAAGAGCTTCTGGGGTGGAGCAAAAGAGTATCGGCTGAGGGACGATATCAAAGTACCGGAATTTGCACCC Sbay.....: ttgtgttccaaagagtatattcatgacaaggatgagATGGATCACAAGCTGAAGAGTGCTTGGGCCTCAGCAGAAAAGTACGAGGTAAAGGGCGTGATTGAAGTACCAGAGTTTGCGCCT consensus: ******* * *** ** *** ** * ** ** * * ** ******* *** * * ** * ** * * * * ** * ** ** ** ***** ** Scer_spli: DDDDDD 720~840: Scer.....: AGCACAAAGGAACTGAACAATGCCTGGTCTGTGAAGTACTGGCCGTTGATTTGGAACGGCAACCCCAATGATCAAATATTGAACGACTATAAAATAGACATGCA-GGAAGTACGAAATGA Spar.....: AGCACAAAGGAACTGAACAATGCATGGTCTGTAAAATACTGGCCGTTGATTTGGAACGGCAACCCCAATGATCAAATATTAAACGACTATAAAATAGACATGCT-GGAAGTACGAAATGA Smik.....: AGTACAAAAGAACTAAATAATGCGTGGTCTATTGAATACTGGCCGTTGATCTGGAATGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Sbay.....: AGCACAAAGGAGCTGAACAGTGCATGGTCTGGAAAGTATTGGCCGCTAATCTGGAACGGCAACCCCAACGACCAGATATTGAACGACTATAAGATAGACATGCG-AGAAGTACGAGATGA consensus: ** ***** ** ** ** * *** ****** * ** ****** * ** ***** ** ******** ** ** ***** *********** ********** * ********* **** 840~960: Scer.....: GCTATCGCGTGCGTCGACGTTGTCTGTGAAGATGGCAACGGCAGGAAAACAGTTTCCAATGGTGAGCGTCTTTGTTGACCCATCAAGAAAGAAGGACAAAGTGGTGGCAGAAGATGGCAG Spar.....: GCTATCGCATGTGTCGACCTTGTCTGTGAATATGGCAGCGGCGGGAAAACAGTTTCCAGTGGTGAGCGTTTTTGTTGACCCATCGAGGAAAAAGGACAAAGTGGTGGTAGAAGACGGCAG Sbay.....: GCTAGCACAGGCATCGGCGCTGTCGACGAAGATGGAGGCGGCGGGGCAACGGTACCCCATCGTGAGCGTCTTTGTCGACCCATCAAGACAGAAGGACAAAGTGGTGGCGGAAGACGGCAG consensus: **** * * * *** * **** *** **** **** ** *** ** ** * ******** ***** ******** ** * **************** ***** ***** Spar_spli: DDDDDD 960~1080: Scer.....: AAACTGCGAAAACTCGCTACCCATCGACCACAGTGTAATGGTGGGCATCCGTGCGGTAGGCGAAAGACTCAGGGAGGGTGTAGACGAAGACGC------AAACTCTTATCTGTGTCTTGA Spar.....: AAACTGCAAAAGCTCGCTGCCCATTGACCACAGTGTGATGGTGGGTATCCGCACGGTAGGCGAGAGACTTAGGGAGGGTGTAGATGAAGACTC------AAACGCGTACCTATGCCTTGA Sbay.....: GAACTACGCGGGTTCGTTGCCTATCGATCATAGCGTGATGGTGGGAATCCGCACGGTCGGCGAAAGACTGAGGGAGGATGCAGATGCAGATGCAGACGGAGACGCGTATTTGTGTCTGGA consensus: **** * *** * ** ** ** ** ** ** ******** ***** **** ***** ***** ******* ** *** * *** * * ** * ** * ** ** ** Sbay_spli: DDDDDD 1080~1200: Scer.....: TTACGACGTCTATTTGACCCATGAGCCGTGCTCAATGTGCTCCATGGCCCTGATCCATTCTCGTGTGAGA-CGAGTGGTCTTCCTTACAGAGATGCAGCGCACCGGGAGCTTAAAATTAA Spar.....: TTACGACGTTTATTTGACTCATGAGCCATGCTCAATGTGCTCCATGGCCCTGATCCATTCTCGCGTGAAA-CGTGTGGTTTTCCTTACAGAGATGCAACGCACTGGAAGCTTAAAAATTA Sbay.....: TTACGACGTTTACTTGACGCACGAGCCGTGCTCGATGTGTTCGATGGCGCTGGTTCACTCCCGGGTGAGA-CGCGTGGTCTTCCTTTCGCAGATGGAGCGCACCGGATGCTTAAAGATAA consensus: ********* ** ***** ** ***** ***** ***** ** ***** *** * ** ** ** **** **** ***** ****** * ***** * ***** ** ******* * * Scer_spli: BBBBBB 1200~1320: Scer.....: CGAGTGGTGACGGGTACTGCATGAACGATAACAAACAGCTAAACTCAACATACGAAGCCTTTCAATGGATCGGCGAGGAATATCCTGTGGGGCAGGTTGACCGGGATGTCTGCTGCTAG- Spar.....: CGAGCGGTGACGGATACTGCATGAACGACAACAAACAGCTGAACTCAACGTACGAAGCCTTTCAATGGATCGGCAAGGAATACCCTGTGGGACAGGTTGACCAGGATGTCTGCTGCTAGt Smik.....: NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACAGCTGAACTCAACGTACCAAGCCTTTCAATGGATCGGCAAGGAATACCCTGTGGGCCCGGTTGATCAGGATGTATGCTGCTAGt Sbay.....: CCAGCGGCGACGGCTACTGCATGAACGACAACAAGCTGCTCAACTCCAAGTACGAGGGCTTCCAGTGGGTTGGTGAAGAGTACCCTGTGGGGGCAGTTGACCGGGACGTATGCTGCTAGc consensus: * ** ** ***** ************** ***** * *** ***** * *** * * *** ** *** * ** * ** ** ******** ***** * *** ** ********* Scer_spli: B Smik_spli: DDDDDD Sbay_spli: DDDDDD 1320~1331: Spar.....: tttttccg--- Smik.....: ttttagac... Sbay.....: gcattggccat { alias......: ['RPL26A'] chromosome.: 12 description: Ribosomal protein L26A (L33A) (YL33) end........: 820142 exons......: [(1, 19), (467, 831)] gene.......: RPL26A introns....: [(20, 466)] length.....: 831 name.......: YLR344W plength....: 277 start......: 819312 tdist......: 258030 type.......: ORF up.........: 1 } Scer: 7 donors and 3 branches Spar: 3 donors and 2 branches Smik: 0 donors and 0 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 993), ('Spar', 999)] ->[('Scer', 1614), ('Spar', 1614)] ->[('Scer', 2229), ('Spar', 2229)] ->[('Scer', 49)] ->[('Scer', 281)] ->[('Scer', 1384)] ->[('Scer', 2425)] ] [ ->[('Scer', 2041), ('Spar', 2041)] ->[('Scer', 2342), ('Spar', 2342)] ->[('Scer', 450)] ] 0~120: Scer.....: aaaattcatttaatattcaatgaagttataaattgatagtttaaataaagtcagtctttttcctcatgtttagaattgtattaatgtacgccgtttacgttggagtgtaaatgtgtctat consensus: ************************************************************************************************************************ Scer_spli: DDDDDD 120~240: Scer.....: tccagaacgaaatctaaatgagcagtacaggcagttcagatggtactgaagcggtactaaagatgcatgaattgaacagatgtggtagttatgtatatgaggaatatgagttgtcacatt consensus: ************************************************************************************************************************ 240~360: Scer.....: aaaaatataatagctatgatcccattattatattcgtgacagttcgt--aacgttttaattggct--tatgtttttgagaaatgggtgaattttaagataattgttgggattccattatt Spar.....: ..............ta-aactcttttaatatttaaggaaaactacatcaaatagtttaataaggtactctttttctggttattaggcgaatattgagataattgttgg-attccattgtg consensus: **************** * * *** *** * * * * * * * ** ****** * * * * *** ** * * ** **** ** ************* ******** * Scer_spli: DDDDDD 360~480: Scer.....: gataaaggctataatattaggtatacagaatatactggaagttctcctcgaggatataggaatcctcaaaatggaatctatatttctatttactaatatcacgattattcttcattccgt Spar.....: ggtaaagattataatat-aggtatacagaatatactagaagatttcc-cgaacatataggaagccacaaaaggaaatcaaaaattttacgtaatcatatta---ttatttcttctttctt consensus: * ***** ******** ****************** **** * *** *** ********* ** ***** * **** * * ** ** ** * **** * ***** * ** * * Scer_spli: BBBBBBB 480~600: Scer.....: tttatatgtt-----tcattatcctattacattatcaatccttgcatttcagcttcctctaacttcgatgacagcttctcataactcatgtcatcatctaacaccgtatatgataatata Spar.....: tttatatgttgtcattNNttatNNtNNtNNatNNNNaatNNttgNNttNNagNNNNNaNtaNNtttNNNNNNNNNtNNNNaNNNtNNNNgNNNttNtNNNNcaNNNNNNNNNaNaNtNNN consensus: ********** ****************************************** ******* ****************** ********* ************************* 600~720: Scer.....: ttgatagcataaccattagttgataggtgatggtggaattttatttcaacagttt-tatacctct---cttatataagcacaggaaggtccatatccacatttaaacttgattaatactt Spar.....: NNNgtaNNaNNNNtgN-NNNtNaaNNNNNNtaNNNNNNNtctaNtNNNNNgNNttNNNNNNtNNNNNNNNNatattaNNNNaNNNNgNNNNaNNttggcctataa---ttattgagaatt consensus: *** ********* * ****** ******* ******** ********* ********** ************* ******************* * * *** * *** * * ** 720~840: Scer.....: ttttttatacctttaactatcatcatcaataatttcttttctgaaagtacgacatcaaagtcgccgagttttgtcttcggaataaatactaggtcagatgaataaagagcaggaatttac Spar.....: gggtgaataa-ttagataattgttgggattccattgttactaaaggctataatattaggtatatagaatata--ctagaagttctcctcgaggatataggaatacacaaaagggaatcga consensus: * *** ** * ** * * * ** ** * ** * ** * ** * * ** * * *** * * ***** * * *** * * 840~960: Scer.....: tatctctg-ataat-ttattatg----ctcctctagtgcaatgg-ttagcatgcattcttccggtggctgtgatccgggttcgagtcccgggaggagcttttaattttttagcgcactat Spar.....: tagttctacatagtgttattattttatcttctttccttttataaattgtcattcattttcctagta--cattatcaatgcttgcatttc------agcttccattagattggatgattgt consensus: ** *** *** * ******* ** ** * * ** ** *** **** * * ** * *** * * * * * ***** * * ** * * * * 960~1080: Scer.....: tct--aatttttaaggaaaaagcatatttccgagtcagtgcatagaaagaacggaggctacgatgccagcacagtgt-ctataaagtcaagaaatacattcaaactcttcgcgtaagggc Spar.....: ttctcaatctttatgc------catcctcttg---caccgcatgtgataa--------tatagtagtagcatgatatgctactaaatagatga---tattagaatttcattccaa----- consensus: * *** **** * *** * * ** **** * * ** * **** * * *** ** * * * *** ** * * * Scer_spli: DDDDDD Spar_spli: DDDDDD 1080~1200: Scer.....: tgtcaatttttcatttccctcaaagttaatgcgcaagagttaggatgatcttgattattagttatttgtttgttccatcaattatgccgacgtccatgaatgctattgaagtatcgatta Spar.....: ---caatt----atatacctgaa---tcatcagctatacatcagcaacccatgaatacgaagtaattatgcata--gccgggtat-----------tgaggattgtttggattacaacta consensus: ***** ** * *** ** * ** ** * * * * * *** ** * ** ** * * * *** *** * ** * * * ** 1200~1320: Scer.....: cttatgctattctattgtatttgagccggcggctagtaaacaagacagcatacctttcca-acatccgtacatattgattattgtatctat--gattttcatgta-------atgtatgg Spar.....: ctcatgctattctgctgaacctgttccgatggttaataaatatgacagtatttccttttatacatccgtacctattgccttacctgtccatttgttcttgaggtatgggttaacaaatca consensus: ** ********** ** * ** *** ** ** **** * ***** ** * ** * ********** ***** * * ** ** * * ** * *** * ** 1320~1440: Scer.....: gttaact-aatcctttctcttctttttttt----ttttctgaaaatcagtagctagaggaacctgttcgtgaaagatatggaatattccgtctagggaagagccgagagctgagagcagt Spar.....: gtttattcgattctcagtattttttttcttcgatttttttgcaaatcaatggctaaaaggatctgtttgtaaaagaaaatga---ctgcgcatagcactgagccgagggttgagggcacg consensus: *** * * ** ** * ** ***** ** **** ** ****** * **** * * * ***** ** ***** * ** * ** *** ******** * **** *** Scer_spli: DDDDDD 1440~1560: Scer.....: atccatcggatgg-----aatcttgcctgga-tgcgtaacgacgacagcttgtctagaaggcgaagtacaagatactaagaagactataacaacagaagacaattttgtagtgcgattct Spar.....: ctctctgtgatggtacaggatttcgcctggaacgcgtaccaacgaaggcttctctagaaggcgaagtactacatactgaggcgactataatagcagaatatggttttatagtggaactgt consensus: ** * ***** ** * ******* ***** * **** **** ***************** * ***** ** ******** * ***** * **** ***** * * * 1560~1680: Scer.....: -atattattgacgtaaccaacaaaaaagtatcagaATGGCTAAACAATCATTAGGTATGTGCACAAATGCTAAATCACTGAAACCCTGTAGAGCTGGAATTGAAAATATAGTTTGTACCT Spar.....: catataattgagaaaaccaacaaaaaagtatcagaatggctaaacaatcattaggtatgtgcacagatgctaaatatattcatccatgtaaaaccagaatcaacgatgaagtttgtacct consensus: **** ***** *************************************************** ********* * * ** **** * * **** * ** *********** Scer_spli: DDDDDD Spar_spli: DDDDDD known....: >================================================================= 1680~1800: Scer.....: TTTGCCTGAGGGCAGAATGACTCAATGTTATCTTAATTCGATTAGAAAAA--GAAGGTGCGTTATCCAAGGTTGAAACTTGTAAACTATTTAGGTGATGTCTCATAA-CTGCAACCACTG Spar.....: tcggaccaaggatagaacagctcagtgttggctgaaatcaatcaaaaaaatgaaaagtactttgtctaaggctggaacctgtaaaacatctag-cgaagtctcataatctgcgatcactg consensus: * * * *** **** **** **** ** ** ** ** * ***** ** ** * ** ** **** ** *** ****** ** *** ** ********* **** * ***** known....: ======================================================================================================================== 1800~1920: Scer.....: GAAAATGACGCAAATATCAAAATAATAGGGAGATAAAGTCTCACGACATGAAAAAATCATAGAATTATTGTTCAATTTATCTAGCCGTATCTTACCTTATGGAAAAAGTGTGAATATGTT Spar.....: ggaaatatcataactatcaacataataga-agatggcgttttacaacatgcaaaagtt-cagaact-ctgtacaattatt--------------cctcatgtaaaagttgtgggtttatc consensus: * **** * ** ****** ******* **** ** * ** ***** **** * **** * *** ***** * *** *** **** **** * * * known....: ======================================================================================================================== 1920~2040: Scer.....: TTTCTAAATCGAGCTTCCCGGAAATTACACTATATTATGCATCCGTGATACATCTGAAATTCAATACTTTCTCC-AAGGTCCTGCTTACTAAGAGGGT-AAGATTTGTTGAAACTCGA-A Spar.....: ctctaaagttgaacaccccgcaaattatagtatattATGCACCAATGGTACATTCGAAATCCAATGTTTTCTCCCAAGATTCTAACTACTAGGAAAGCGAAGATTAATCGAAGTTTCACA consensus: * ** * ** * **** ****** * *********** * ** ***** ***** **** ******* *** * ** ***** ** * ****** * *** * * * known....: ======================================================================================================================== 2040~2160: Scer.....: ATACTAACATTA-------TTTTCATTATTTTAGACGTTTCCTCCGACAGAAGAAAGGCTAGAAAGGCTTATTTCACCGCCCCATCCTCCCAACGTCGTGTTTTGCTATCTGCTCCATTA Spar.....: ATACTAACATTTCTTTTTTTTTTCATTATTATAGACGTTTCCTCCGACAGAAGAAAAGCCAGAAAGGCTTATTTCACCTCCCCATCCTCCGAACGTCGTGTTTTGCTATCTGCTCCATTA consensus: *********** *********** ************************* ** ****************** *********** ***************************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB known....: ================================>= 2160~2280: Scer.....: TCTAAGGAGTTGAGAGCTCAATACGGTATCAAGGCCTTGCCAATCAGAAGAGATGATGAAGTTTTGGTTGTTCGTGGTTCCAAGAAGGGTCAAGAAGGTAAGATTTCATCTGTTTACAGA Spar.....: TCGAAGGAGTTGAGAGCTCAATACGGTATCAAGGCTTTGCCAATCAGAAGAGATGACGAAGTTTTGGTTGTTCGTGGTTCCAAGAAGGGCCAAGAAGGTAAGATTTCATCTGTTTACAGA consensus: ** ******************************** ******************** ******************************** ****************************** Scer_spli: DDDDDD Spar_spli: DDDDDD 2280~2400: Scer.....: TTGAAATTTGCCGTTCAAGTTGACAAGGTTACCAAGGAAAAGGTCAACGGTGCTTCCGTTCCAATTAACTTGCACCCATCCAAGCTTGTCATTACTAAATTACATTTGGACAAGGACAGA Spar.....: TTGAAGTTTGCCGTTCAAGTTGACAAGGTCACCAAGGAAAAGGTCAATGGTGCTTCTGTTCCAATTAACTTGCACCCATCCAAGCTTGTCATTACTAAATTACATTTGGACAAGGACAGA consensus: ***** *********************** ***************** ******** *************************************************************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB 2400~2520: Scer.....: AAAGCTTTGATCCAAAGAAAGGGCGGTAAGTTGGAATAAattatgtaattccctgaaaa--cttcctcgaaatttattgcactttttttactcaaaccatttaataatcatatgtaaaac Spar.....: AAAGCTTTGATCCAAAGAAAGGGCGGTAAATTGGAATAAattatataattccctaaaaaaacatcctgaaaatttattgcactttttttactcaaaccacttaataatcatatgtaaaac consensus: ***************************** ************** ********* **** * **** ****************************** ******************** Scer_spli: DDDDDD 2520~2640: Scer.....: gtataaaatagtatccattccactgtactcagtgtcttacgtaaagggctgtatactggcactaccttttactatggatatgtgctagctttttcggagaagaaatgttcgccttacgct Spar.....: gtataaa-tagtatccattctactgcactcaatatcttacatgaaggactagatgctggcgctatcttttaccatagatatgtgttagcttttccgcagtaaaaatgtccgcctcatgtt consensus: ******* ************ **** ***** * ****** * **** ** ** ***** *** ******* ** ******** ******** ** ** * ****** ***** * * * 2640~2760: Scer.....: agaaaccggggttaagggggcgtgagaatgaatattggcagacaagaaccgagatagaatcttaa--cacaaaaacagttcatcctacttctacgcctttatacagttatactgaaagat Spar.....: agaaaccggggttaagggggcgtgagaat----actggcagactagaaccgagatagaatctctaaccacaaaaacagttcatcctac------gcctttatatagttatacccaaagat consensus: ***************************** * ******** ****************** * ********************* ********* ******** ****** 2760~2813: Scer.....: ctttgcataggggcatagtttaaaat--aaaatatagggttgtcatagcaaac Spar.....: cttcgcacagggatttaacctaaaaataaaaatataaggttggtgtagcgaac consensus: *** *** **** ** ***** ******** ***** **** *** { alias......: ['RPS22B'] chromosome.: 12 description: Ribosomal protein S22B (S24B) (rp50) (YS22) end........: 857316 exons......: [(1, 133), (617, 876)] gene.......: RPS22B introns....: [(134, 616)] length.....: 876 name.......: YLR367W plength....: 292 start......: 856441 tdist......: 220856 type.......: ORF up.........: 1 } Scer: 5 donors and 3 branches Spar: 0 donors and 0 branches Smik: 8 donors and 5 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 1510), ('Smik', 1510)] ->[('Scer', 2222), ('Smik', 2222)] ->[('Smik', 382), ('Smik', 378)] ->[('Scer', 27)] ->[('Scer', 1161)] ->[('Scer', 2974)] ->[('Smik', 507)] ->[('Smik', 1353)] ->[('Smik', 2607)] ->[('Smik', 2937)] ] [ ->[('Scer', 2054), ('Smik', 2054)] ->[('Scer', 2690), ('Smik', 2690)] ->[('Scer', 2397)] ->[('Smik', 1123)] ->[('Smik', 1498)] ->[('Smik', 2127)] ] 0~120: Scer.....: acaggttggatatttttatattaatatgtacgtaatatgtctggaatatttcgaaaacacgggtaagcaaataaaggcctcccattcttccttctatagaagcgtgagcgcttcctcatt Scer_spli: DDDDDD 120~240: Scer.....: aacctcttctttagcagtccatatgtaaagatatccaagagattgttcccataaaacgttgacgctaagcaccttcatcagtgtcatatagaaagacagcgctccaagcaccatttccgt 240~360: Scer.....: tttctttcattttggaatggttaaataatgactatctatgatagtttaaaaataccaatatcatagaagatgaaagtcaaatatatgactaaaaatttaggtgaaaaatgtaatttaatg Smik.....: ------------------------------------------------------------------------------------------------------------------atagct consensus: ** 360~480: Scer.....: tatacctttcatttacaaaatgtcaaagactttacacagtctccgcgtcaaattatcacatgaatgtacaatcacttttctgactgctctaagctatgtcattgcgatgcagaatttcac Smik.....: tgtatctttc-tacaccagtcagtacgtacttaatat-gtctaaaaaacaaa--gttaaacaaa--caaagtccccctctttattttcc----gtttataattgc--tggaga----cgt consensus: * ** ***** * ** * * **** * * **** **** * * * ** * * ** * * * * * * * * * ***** ** *** * Smik_spli: DDDDDDDDDD 480~600: Scer.....: tgccgcatagacaattttgtgtttcttttgacggtgaattcatactcatctgttccgtttatgcacatttacctcccacttcgctcttagcgattttatgtcacacaacaactttattcg Smik.....: ttcctctttgagaaatgaggactattggtatgcgacgacccagatcta---attaagtttgaataa---tacctaccattacg-----agca---tcatgtaagaaagcagcttt----- consensus: * ** * * ** ** * * * * * * * ** * * ** **** * ***** *** * ** *** * **** * * * ** **** Smik_spli: DDDDDD 600~720: Scer.....: tttatgccggactttcctacttatacataatggaaa-acttaaa------ataattttaaaaggaaag----tttctgccacatataactagttctcttttcttatatgcaattcggttg Smik.....: -ctgagcagcacatatcttcttattcatattggaaagacttaaacaatggatatttgtaaaagcataaacgcttgatagcacagataaaca-ctcagatgagggatgctcgactctgg-g consensus: * ** * ** * ** ***** **** ****** ******* *** ** ****** * * ** * **** **** * ** * ** * * ** * * 720~840: Scer.....: catacttaaaagtaatcagaccgaatgaacatgtgcctttgcattacttcttttcaaaggacatct-ctttgcaagctaaccatctga--aaggccgatgaatggtcaaaggacgtcatt Smik.....: cgcctttcaaact--ttcgaacgcattttaaagaactagatatttgttttcttgaaatacatatataccttgcaaacgagatgaataaccacgttgaattcaaatgcaccgagtctcttt consensus: * ** *** * * ** ** ** * * * ** ** ** ** * ** * * ****** * * * * * * ** * ** * ** ** 840~960: Scer.....: caaaa-cgcaaagggaatttccacattattttacgtaatgcttcgctgttacaaagacagaaacttgacaaatcaaggtcaactggatcgttgctcgaaa-gtcgccgtcagccatgcgt Smik.....: caccatctccgttccaacttacttcctatatttcatttcatatgg--gattcattcaccagcattagatatactctcg--aaggaaaacactatacaaaaagtattcagctactgagggg consensus: ** * * * ** ** * *** ** * * * * * * ** ** * * ** * * * ** * * * * *** ** * * * * * 960~1080: Scer.....: tttactt-tcgtttgcaaaactctttctcttgtgtatcgtatttagcccgaaattagactataccaaaaaaaagaccaagattcttaagcttcatcaatcctttggaactgcaactattc Smik.....: tctgcttaccgcatccacaac---ttgaatcctgtatcataacaa---tataattacctta---caagaaattgattgagaat-taaagcaccatga------cagtacgacaattgatc consensus: * * *** ** * ** *** ** * ****** ** * ***** ** *** *** ** *** * * **** *** * * ** *** * ** 1080~1200: Scer.....: ttacaatctttcatttacatggctcaagaagtgttgctgctcaaaatttcattctatttcatgattatttacattaaacaagtatgatccgttattcttc-tcgcaaccggagtgctcga Smik.....: attacatattatcttttc----ttcaagagatctct---ctccaactaacagcctttcaagcagataagggcgtcca--aagcacactcacatattctgggtaatcctctttgttataag consensus: * ** ** *** * ****** * * *** ** * ** ** * ** * * * *** * ** ****** * * ** * Scer_spli: DDDDDD Smik_spli: BBBBBBB 1200~1320: Scer.....: gaagtgccagtaagacgacaccctatttttcaagtccagcattggaagacttccaatgaacactcttatcattattctttatgcattacgtt-tcgcagtaatcctagaaccctaacttt Smik.....: caaaagtttgaatgatagaagtatacttacc---tcctacttt---agccttcaaacttcctttctt-ctgcggtcattcatacacttcattgccttagaattcgtcaaaccctaacttt consensus: ** * * * ** * ** ** * *** * ** ** **** ** * **** * ** ** ** * * ** * ** * ** * ************ 1320~1440: Scer.....: ttct----aaaattaccgtcaaaaatgacggacgcaacttttctcagaaattttttttttcatttctcttaaaaagttttctacgctggataaattgttctcttccctttgaaatatgga Smik.....: atcaggcaaaaatgaccgttacaagtgatcgacgcatgtttt-tcaaaagctttttttttcacgttt-ttgaaaagttttctctttcatacaaattgt-ctcacttctttgacttttttc consensus: ** ***** ***** * ** *** ****** **** *** ** *********** * * ** *********** * ******* *** ****** * * Smik_spli: DDDDDD 1440~1560: Scer.....: gacgt-tcaaagtcaatttccacacatttaaggtgaacaaataaattataagataccacattaacaacaagtatgtggacgagg-tgtggtaagatctccgctgaggttgattgaaaagt Smik.....: catatatttgaaactatttccacctaaagaagccaagcaaaaaacttcaagattaccatactaacaacaagtatgtggtgatgaatttggtgagatatttg-tgagattgattggatttt consensus: * * * * * ******** * *** * **** ** ** * ***** * ***************** * * **** **** * * **** ******* * * Scer_spli: DDDDDD Smik_spli: BBBBBBB DDDDDD 1560~1680: Scer.....: attgggtaaatttgtactttttgtct---gctgctggtcgtttgtctttcgttttaaaattgcgctagacaagtaaacagggattgcttaagaatcaaagtagcttaactctaaagtatt Smik.....: aaagagtaattgtaaacttttttttctcagctgctagtcgtttgtctttcgtttttacattgcgctagataagttaacagggattgctaaagaatcaaagtaactagactctaaagtaga consensus: * * **** * * ******* * ****** ******************* * *********** **** ************* ************* ** *********** 1680~1800: Scer.....: attttcctcagttgtgggcccatgtgtt--------ggagggaaggaatatattgaaatgtaaatgttcttaagttcggttgaacttggatattgttacaagagttctagtctttgatac Smik.....: ac--accatatttttggaccgacatctctttctaaaagaggtcggaagcgtacttagaagtaaatattcttaagttcggttgaacttggatattattacaagagttctagtcttcgatac consensus: * ** * ** *** ** * * * **** * * ** * * * ****** **************************** ******************* ***** 1800~1920: Scer.....: catttttacgcaattacaaccgcattatttaccttttcatcttcagttttacggttcagtttattctgttacgaaagaactatggtgattcaaaggcg--aagtgcgtaggattgtaact Smik.....: cgtttt-aagcaattgtaaccgcaccattcaacttctatgtttaattctttcattttagtttttgctattaggaaaggattaacttaatttaaaggtggaaagtgcgtagaattgtaact consensus: * **** * ****** ******* *** * *** * ** * * ** * ** ***** * ** *** ***** * ** * *** ***** * ********** ********* 1920~2040: Scer.....: cctatatctttaggatacttacaattttgtactgttttcaagaccactgtaaccgataataaaccg-gaggacacattttaacccactatttttttcagaagatcagatgcgagagctcg Smik.....: cctacgatcctgggatacttacaattttgtactgtttccaagactattgtagctgatacaaaattaagagaatgcattc-aactttttacttttct--ggcaatcaaatgcgagagtgag consensus: **** * ************************* ****** * **** * **** *** *** * **** *** ** **** * * **** ********* * 2040~2160: Scer.....: aagcataagtataatactaacgtttcaaaacatagtaattaggtaaaaaATGACTCGCTCTTCCGTTTTAGCTGATGCTTTGAATGCCATTAATAACGCCGAAAAGACCGGTAAACGTCA Smik.....: aaacatgagtttaatactaacgtcttatgacatagcaa---gataaaaaATGACTCGTTCTTCCGTATTAGCTGATGCTTTAAATGCTATTAACAACGCCGAAAAGACCGGTAAGCGTCA consensus: ** *** *** ************ * * ****** ** * ************** ******** ************** ***** ***** ******************** ***** Scer_spli: BBBBBBB Smik_spli: BBBBBBB BBBBBBB 2160~2280: Scer.....: GGTTCTATTGAGACCTTCTTCCAAGGTTATCATCAAGTTTTTACAAGTTATGCAAAAGCATGGTATGTTCCAACTATTTTTCAATATTTTCACATGTGTTTCAATTTCTGCTTATT--TT Smik.....: AGTTTTGTTGAGACCTTCTTCCAAGGTTATCATCAAGTTTTTGCAAGTAATGCAAAAGCATGGTATGTTC--ATTAATTTCCAAT--TTTCTCATGGATTTTAGcttttgcttattattt consensus: *** * *********************************** ***** ********************* * ** *** **** **** **** *** * ** ******** ** Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >========================================================= 2280~2400: Scer.....: TAAATGTTACCACGAGGT--TTGTCCAAGTTCAATGTTGCGCAACTCTAACGAAGAAATAATTATTGCCATTGTTTTTTACTCCGGGCTGATAACTAGATGGTGTGATCGGGCAGTATAC Smik.....: ttaggttttccacgaaaccgttttcaaagttgaacgttgtgcaa----gacaaaagaaaaactattgctattgttttttattccgggctgataactagatggtgtgatcggacagtataa consensus: * * ** ****** ** ** ***** ** **** **** ** ** ** ** ****** *********** ****************************** ******* Scer_spli: BBB known....: ======================================================================================================================== 2400~2520: Scer.....: TAATTTATACTGGACAAAGACTCGTAAAAGATGTTCTTTGTGCTTAGTCCCATACTGTTTTTTAAGTGTCCGGGATATTTAATCCCATGTGGAAATGCTTCTTACACGGTTATGGATTAC Smik.....: taatttatactgaacaaagactttcaaaagatgttctttgtgctcagtcccatactgttttttaagtgtccgggaaattcaatcccatgtggaaatgctttttacacggtcatgaattac consensus: ************ ********* ******************* ****************************** *** ******************** ********* *** ***** Scer_spli: BBBB known....: ======================================================================================================================== 2520~2640: Scer.....: ACCTCATGTGTAGCTACTATATCCATTACCGTTTACTTTTCCTCAAAATCTCACTCTTAAAATTTTCAATGGCAAAATTCTTC---CGCACAACTTAGACAACATTTTCTTGT-TTTTTA Smik.....: acttcgcgtgtagctacaatatccattaccgtttacttttcctcaaaattttactcttaac-ttcacattagcaaattttttctttcgcatgtcttaaacatcattctctcttgttttta consensus: ** ** ********** ******************************* * ******** ** ** * ***** ** *** **** **** *** **** *** * ****** Smik_spli: DDDDDD known....: ======================================================================================================================== 2640~2760: Scer.....: TGAAGTAAGCAAAAATTTCGAATCAACAACGCTCCATGAGATT-CTTCAATACTAACATTTACTCCTTATTTAGGTTACATTGGCGAATTCGAATACATTGACGACCACAGATCTGGTAA Smik.....: tgaggtaagcaaaggattggaattcaatatactccatgaaaagaccctaatactaacagttgcttttt-tttaggttacattggcgaattcgagtacatcgatgaccacagatctggtaa consensus: *** ********* ** **** * * ******** * * ********** ** ** ** ************************ ***** ** ***************** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ========================================================================>= 2760~2880: Scer.....: GATTGTCGTCCAACTGAACGGTAGATTGAACAAATGTGGTGTTATTTCCCCAAGATTTAACGTTAAGATTGGTGACATTGAAAAATGGACCGCCAACTTATTGCCAGCCAGACAATTCGG Smik.....: gattgttgttcaattgaacggtagattgaacaagtgtggtgttatttctccaagatttaacgttaaaattggcgacattgaaaagtggaccgccaacttgttaccagccagacagtttgg consensus: ****** ** *** ******************* ************** ***************** ***** *********** ************** ** *********** ** ** 2880~3000: Scer.....: TTACGTTATTTTGACTACTTCTGCGGGTATTATGGACCATGAGGAAGCTAGAAGAAAGCACGTTTCCGGTAAAATCTTGGGTTTTGTCTATTAAgtaagtttttagtagtggtacatata Smik.....: ttatgttattttgactacttctgccggtattatggatcacgaagaagctagaagaaagcatgtttctggtaaaatcttgggttttgtttattaagta-gttttcaataatggta----ta consensus: *** ******************** *********** ** ** ***************** ***** ******************** ********* ***** * ** ***** ** Scer_spli: DDDDDD Smik_spli: DDDDDD 3000~3120: Scer.....: taatattaattcttatatccgtcttttctctttggttattttctcagcttcaga-tattcaaggaaccgtatttttgcgtaatagcgaaaaattgtttatgttacataataagtgaaagc Smik.....: taatattaattcttttatctgtcatacatttttat---ttttttcagcttcaaactgtaccagaaaacatacttttgcgtaatagcgacaaactgtcattatta----atgaagaaaaac consensus: ************** **** *** * * *** **** ********* * * * * ** ** * ** **************** *** *** * *** ** * *** * 3120~3197: Scer.....: tggaggagcatatgtatagaatcgaagagaaacctgaacaatttttcggtattagttactaaaaggctcacatatac Smik.....: ttgat---cataagcacaaaatacaatagagccttacacaatttctgagttttcgctactgaaaaggtcacatatac consensus: * ** **** * * * *** ** *** * * ******* * ** ** * **** *** * ********** { alias......: ['RPL31B'] chromosome.: 12 description: Ribosomal protein L31B (L34B) (YL28) end........: 931752 exons......: [(1, 57), (407, 691)] gene.......: RPL31B introns....: [(58, 406)] length.....: 691 name.......: YLR406C plength....: 230 start......: 931062 tdist......: 146420 type.......: ORF up.........: 0 } Scer: 3 donors and 1 branches Spar: 2 donors and 2 branches Smik: 4 donors and 4 branches Sbay: 4 donors and 3 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1320), ('Spar', 1320), ('Smik', 1320), ('Sbay', 1320)] ->[('Scer', 1697), ('Spar', 1697), ('Smik', 1697)] ->[('Sbay', 478)] ->[('Sbay', 489)] ->[('Sbay', 1444)] ->[('Scer', 947)] ->[('Smik', 1162)] ->[('Smik', 1552)] ] [ ->[('Scer', 1652), ('Spar', 1652), ('Smik', 1652), ('Sbay', 1652)] ->[('Smik', 1329), ('Sbay', 1329)] ->[('Sbay', 278)] ->[('Smik', 466)] ->[('Smik', 1044)] ->[('Spar', 249)] ] 0~120: Scer.....: ------aataaaccgttagcttttgaatactgtatttct---tttactaaactgatcgtacaaaattattcg-ggttttaacgaccttaat---ggacaaaaatatgtgacaagctatat Spar.....: ------aataaaccgttagtctttgaatattgtattttc---ttaattggacttatcgtacaaaattattcgtttttttaacgaccttaat---gga-aaaaatatacggcaaggcctat Smik.....: .......gttaattcttagtctttgattgctgtaatctt-ttggggttgaaccgaccgtacaaaactattcttttttttaacgaccttttttactgagcaaaatatacagcaaagcctat Sbay.....: cctatattttaacccctaggtatttgct-ttgtttttacggatgtagaggtcttatcaaataatataattcg---ttctaacgaccttatt---tagaagagatgtatagcgatatctat consensus: * ** *** ** * *** * * * * * ** * **** ** ********** * * ** * * * *** 120~240: Scer.....: tgaagtaccag--cggaagagtagctaagcactagcgtttgttgttagagtattccctgtttttataaatattcca--aagaa-ttatacaacacacttttttgcgaccaaagaataagc Spar.....: tgaagtaccagtatagaagaatacttgagcactagcgtcctattttcgtgtattccttgtttttataaatattccaataagaa-ttatacagcacacctttttgcgaccaaggaatgagg Smik.....: tgtggaactag--cggaagagtagctaagtacaaa-gtctcttgt----gtattctctgtccctgtgaatatcccaataatagcctatacagcacagtttcttgcgacgaaataatgagg Sbay.....: tggaatactag--aggaatagtggttacgtaccagtatttgtttat------ctctttgcttctttaaatctcttgggaagaa--------------cctgttgcgtccaaaaaataaga consensus: ** ** ** *** * * * * ** * * * ** ** * * *** * ** * * ***** * ** *** ** 240~360: Scer.....: agaaaaaaataataactccgatggttatttctattgtttactaaagttcaatgcctctatcactcatgcatcgt---ttcattttaaagttgaaaaatgttagcaag-aaaaaaaaagaa Spar.....: agaaaaaaatattaactccggtggttgttcctattgtttactaaagttcaatgtttctatcatttatgcatcgt---ttcattttgaagttgaaaaatactagcaagaaaaaaaaaagaa Smik.....: ag-aaaaattaattattttgggtgttgttcctattgtttaccaaagttcaatcttactatcatttatgcatcgt---tttatttagaagttgaaaaatgctaaaaa--ggaaaaaaagaa Sbay.....: agaaaaaaacaacagctccggtagctattcctattgtttactaatgctaaaagctgctatcatttatgcatgattaattctacttggatgctgaaaatgctagca---aagaaaaaagaa consensus: ** ***** * * * * * ** *********** ** * * ** ****** * ****** * ** * * ***** ** * ********* Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 360~480: Scer.....: acgcgcgctgatagcattacacacgggtagcaagcaaacatggtgtggggaaggtgagggtaaagaagaaatctaccaagatcatggtgctgcacgtttgc-tgagccaaacaaaaccac Spar.....: acgcgcgctgatagcattagtcacgag-----aggaagcattgtgtgggggaggcgaggggaaagaagaaatctacaaagg---tgttgcttcaggtttgg-tggaccttaataagccct Smik.....: atgcgcgc-gatagcattgcccacgag----gagcaaacaatctgtgggggatgcgagtggaactacggaacttgagcagg---aggtgctatgaacgtgattgggaactaacattcggt Sbay.....: acgcgcgccaatagcattgcccacg-------agtagccgtaacgtgtgggggac-----------aggaagccactaaag--gaagcgctacgaacgtggatacgtcgcaagaaactgt consensus: * ****** ******** **** ** * * *** ** * ** * *** ** * * * * Smik_spli: BBBBBBB Sbay_spli: DD 480~600: Scer.....: tgttgtcggtagaattatcgaattatcgataatcttccataaagacttttttactaaga-gagacttcgtatctctttttcttttgattcggaataaaa-ccccgttagtac-catat-- Spar.....: tgatgccggttgagatgtc---------actatctgtcatactgaactttttactaaag-gtgacttcttatttatttcctttttgactcggaatgaaa--tccgttcctat-catattg Smik.....: tgaaaactagtcaa-tatc------ttaacgatcgggtacacaggtctttctacttaaattactattgcta-atattcattttctatctcgtgatgaaaaccctgtccctgcgggtacta Sbay.....: gagtgctcggtaagttaac----------tagtccactctg--ggcctctgcaataaaacattgcttactgtacagcactctataaagctggcgcaagg-cctcgttcctag-cttgttt consensus: * * * ** * * * * * * ** * * * * ** * * Sbay_spli: DDDD DDDDDD 600~720: Scer.....: aggacgtttacttaaag--------ccttgc--gccatatcgccgccagatg--atacaaaaaccgattttattatcctcgtt-tctgtttctctacatccgtgcattattacatagtat Spar.....: gggatacttgctcaaag--------ccttgc--gccatagggccgccagata--gttcccatgccgtttttattttcctcgttgagtttatttttacatctgtgcatt---------tac Smik.....: aatacctttacctaaag--------ccttgc--ggtgtttggccaccaagta--attttgatgccattttt-----tcaggtcggagtaataattacgcccgtgcatt---------tgt Sbay.....: catatgttcggttaaagttcttgtaccttacctactgtatggctgcaagctgaaatgctggcgcttttgtttttccccgcgtggatatcgcttttgcacccgtgcatt---------ttt consensus: * * **** **** * * ** * * * * * * ** * ** * * * ******* * 720~840: Scer.....: acatccgtacatccgtacatccgtacatctgtacacaaaaaaaatcacctcatacaattttttaggagtgccgtttaaatgaagcgcagccagatgcgacaaaaacttaaaggcgcggct Spar.....: acatctgtacacccacattt---tatat------------------------tacatttttcttgaattttttcctggatgaagcgcag----------aaaaaccttagttgcacagcc Smik.....: acatctgtacacccatttct-------------------------------agactattttacgaaatattggcttgttagaagcacag----ctgaaataaagcttttgtggagtggca Sbay.....: agactcgtacacccgccaagcctgaaa-------------------------aatcatgctgaaaaattactagccggccaatgtggcc----attggaatcaagcttagccgagcagc- consensus: * * ***** ** * * * * * * * ** * ** 840~960: Scer.....: cagcctagattacgtt-ctttttcaggtgatggtgccatttccgcccttctcgtta-gagccggaacgcaga-tgagctgccctctggcgcccgcgctcctcgcctggtaag-ttcacta Spar.....: tagcctagaatgcttt-atttttcaggtaaagctgcccgttccgtccctctcactg-gagctagggggaagagcccacttccctctagcgtccgtgctgctcatctggtccgtttcatag Smik.....: cattctaaattttgacgaacgttcaggcggcacaggtcttctcgttcctctcaccgtggctagagagggaag--aaacttgcgtttagcgcctaagctgttggtctggcagttgttacgg Sbay.....: --gccgagactgcggt-ttct-----gtggggacagaacatttgtttctctcagtgcgggcctagagggaga-----catgagtttagtgccggtgctgtccgtataggcgg-ctcccgc consensus: * * * * * * **** * * * * * * * * * *** * * * Scer_spli: DDDDDDD 960~1080: Scer.....: ctaggctggaagttgtatggtgtcctctgggattgcaagggcacgctagttggatgtgctcacaattgga-ttggcacttcaaatgccaactggaagggcgcgaaaccgagggtaatgcg Spar.....: ctaaactggaagctgtagggtttctactgggtatgggacgaccctctgattgaatgtgctcacgactgaacttggcacttcaaatgccaattgggagcgcgcgaaaccgagggtaatgcg Smik.....: ctaagctggaggtcgcaggacatccagtagggatggg-gaacctgttgattgaatgtgcccacgaatggatttggcacgtcaaacactaactaataggttgctaaaccgagggtaatgca Sbay.....: ctgaacttg-agtgggaggctctcttctggg--cgggaggaactgagtattgcacgt--ccatggatggatttggcaatcc-aatgccaattggcagagtgcgaaaccgagggtaatacg consensus: ** ** * * * * * ** * ** * *** * ** ** ** * ****** * ** * ** * ** ** ************** * Smik_spli: BBBBBBB 1080~1200: Scer.....: acagagggcactgacgttgtttcgtaaccttgtaagctctttctgatggtagtgcttcatgtacatgtttactctattatttgaccagtctcattgttgatagg-ttccttagttttaca Spar.....: acagacggctctgacgttgttttgcaagcttgt-agctcttcgcgatggtagt-ttgcgtgtacatattcactctgttatttgaccagtttcattgtcaataggctttcttggttataca Smik.....: acggacggatctgacattgtttggtgagcttgg-agcccattgtggtagtagtattgcatgaccatgtttaatctgttatttg-tcagttgcgctgctaatgagatttcttgatt-tata Sbay.....: atggagggctctgatgctgtttggtaagcttag-gaccctttgcgctggtagtgttgcgtgtgta----cactaagctatttggcagg-----ttgccagc----ttcttgaatcgtata consensus: * ** ** **** ***** * * *** * * * * * ***** * * ** * * * ****** * ** ** * * ** * Smik_spli: DDDDDDD 1200~1320: Scer.....: tagtcttgggtc--ttagtatatttcaattgc-acg-agcag-ataatccaaagtacttgaaaATGGCCGGTTTAAAAGACGTTGTCACTCGTGAATACACCATCAACTTGCACAAAAGA Spar.....: tacgcttgactc--taggttaatttcaattgc-acg-agcagaataaacaaaattacttgaaaatggccggtttaaaagacgttgtcactcgtgaatacaccatcaacttgcacaaaaga Smik.....: tacgcttgaatt--taagtttatttaaatagtaacg-agcagattaaacaaaaataattgaaaatggccggtttaaaagatgttgtcactcgtgaatacaccatcaatttacacaaaaga Sbay.....: tacgcttgaactggaaaatatattttagctgtaacgtagcaaactaaacaaaattatctagaaatggccggtttaaaagacgttgtcactcgtgaatacactatcaacttacacaaaaga consensus: ** **** * **** * * *** **** *** * *** ** * ******************* ******************** ***** ** ********* 1320~1440: total....: ====== Scer.....: GTATGTCGAAATTAGCGTT-GTCTTTACGTGGGAAATTATTGAAAGCCAACAAGCGATATTGTGGTGAAATACCAAGCGAAATCTATACGGGTGAAATTTCA-----TTTTCCAATGATT Spar.....: gtatgtcgaaattagcatt-gtcttcatgtgggaagtaattaaaagccaacaagcgagattatagaggaatagcatgcaaaatctgtatagatcaaacttaa----tttttccaatgatg Smik.....: gtatgtcaaaattaacattagaatt-atttgggaagttatcataagtctacaagcaatattgtggaaagatgttacacaagatgaacaggaaggaagctgag-----ttttcagttgatg Sbay.....: gtatgtcgaaattaacatcggatttcatgtgggaaatggttataagccaat-ggcaagatttcaaaactataccaggcgagattgatggaga--aagcctaatgattttttcgaatagtg consensus: ******* ****** * * * ** * ****** * * *** * * ** * *** ** * * * ** ** ***** * * Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD BBBBBBB Sbay_spli: DDDDDD BBBBBBB known....: >======================================================================================================================= 1440~1560: Scer.....: GACCCCAGGTTTTAATTCGGAATATTAG-AGGTTATTATATGGA--ATGCGTGATGCAAGGACTGGAAGGTTCTTCTTCGGTACTGCA-TTTCTC--TGTGTTCTGCGATCGATATCCGT Spar.....: agccgtaggtttaatttcggaatacaagaaggtcactgtatgga--gtgcgtgatgcaagggctgtaagacttctatccattgctgca-gtgcttcatctctcctcaagttgctatttgc Smik.....: aaaccaaggttttattttgaagcggg---gattcaatatatgga--acgtaagatgcg----------------------gtgcatca----------tcgttttacaatcagtatgcat Sbay.....: agccgtgagttt---cttggaatgcg---atgccactaagccgaatatatatggtcctataacacaaaacgccctccccctcccatcgcgtttaccattactattacaattgctatgcga consensus: * **** * * * * * ** * * * * * * * * *** Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: ======================================================================================================================== 1560~1680: total....: ======= Scer.....: AC-CTCACGTT---TACACTATAATGGCGCTTGGGCCGATGTTTTTGG---CGTGATGCTTTAGTTCCACCTTCTTATAACAACTTTTTTTTTACTAACAGACCAATCTTGAATTGATAT Spar.....: acactcacctt---tacaccataatgacgcttgccctca-attcatgg---cttaatgcttgagttccaccttttcatagcgac---ttttttactaacagcccaatcctgaattggtat Smik.....: acgcctatgtt---tataccatgatcacgcttgcgcacg-acttatgt---tttgaggcatcaggtccaccagtt-------------tttttactaacattccattaataattcggtat Sbay.....: aggcatatgtttaatatatcacaaccatgcctggctccg-atctctagttttttgaaattccagttcca-cttttgatattgac-ttatttttactaacagcccaattctgaattgaaat consensus: * * * ** ** * * * ** ** * * * ** **** * * ************ *** * * * * * ** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ======================================================================================================================== 1680~1800: Scer.....: TAATATAGCTACATGGTGTCAGTTTCAAAAAGAGAGCTCCAAGAGCTGTGAAGGAAATCAAGAAATTCGCCAAATTACACATGGGTACTGAAGATGTCCGTCTAGCCCCAGAATTGAACC Spar.....: taatatagttacatggtgtcagtttcaagaagagagctccaagagctgtcaaggaaatcaagaagttcgccaaattacacATGGGTACCGATGATGTCCGTCTAGCCCCAGAATTGAACC Smik.....: tatcatagttgcatggtgtcagtttcaagaaaagagccccaagagctgtcaaagagatcaaaaagttcgctaagttacatATGGGCACTGAAGATGTCCGTCTAGCTCCAGAATTGAACC Sbay.....: taatatagttacatggtgttagcttcaagaagagagctccaagagctgtcaaggaaatcaagaagttcgccaaattgcacATGGGTACCGAAGATGTCCGTCTAGCTCCAGAATTAAACC consensus: ** **** * ******** ** ***** ** ***** *********** ** ** ***** ** ***** ** ** ** ***** ** ** ************** ******** **** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD known....: ======>= 1800~1920: Scer.....: AAGCTATCTGGAAAAGAGGTGTTAAGGGTGTTGAATACAGATTGAGATTGAGAATCTCCAGAAAGAGAAACGAAGAAGAAGATGCCAAGAACCCATTGTTTTCCTACGTCGAACCAGTTT Spar.....: AGGCCATCTGGAAGAGAGGTGTTAAGGGTGTTGAATATAGATTAAGATTGAGAATCTCCAGAAAGAGAAACGAAGAAGAGGACGCCAAGAACCCATTGTTCTCTTACGTCGAACCTGTCC Smik.....: AAGCCATCTGGAAGAGAGGTGTCAAGGGTGTTGAATACAGGTTAAGATTGAGAATCTCCAGAAAGAGAAACGAAGAAGAAGATGCAAAGAACCCATTGTTCTACTACGTCGAACCTGTTT Sbay.....: AAGCTATCTGGAAGAGAGGTGTCAAGGGTGTTGAATACAGACTAAGATTGAGAATTTCTAGAAAGAGAAACGAAGAAGAAGACGCCAAGAACCCATTGTTCTCTTACGTTGAACCTGTCT consensus: * ** ******** ******** ************** ** * *********** ** ******************** ** ** ************** * ***** ***** ** 1920~2040: Scer.....: TGGTTGCCTCTGCTAAGGGTCTACAAACCGTTGTCGTTGAAGAAGATGCTTAAattgtaaaaaaaaaaaaataatgtccatcttataagcattttatttcttttaggttatattattaca Spar.....: TGGTCGCCTCTGCTAAGGGTTTACAAACCGTCGTCGTTGAAGAAGATGCTTAGattgt-----aaaaaaaatagtgtccatctcataagcattttatttgttttaggttatattattaca Smik.....: TGGTTGCTTCTGCTAAGGGT-TACAAACCGTTGTCGTTGAAAGAGATGCTTAAATTGta........................tataagcattttgtttgttgtgggttatagtattata Sbay.....: TGGTTGCCTCTGCCAAGGGTTTACAAACCGTTGTCGTTGAAGAAGATGCTTAAa-tgt-----aaaaggaataacgtccatcttataagcatttt-tttgttttaggttaaagtaatata consensus: **** ** ***** ****** ********** ********* ********* * *** **** **** ******** *********** *** ** * ***** * ** ** * 2040~2160: Scer.....: caaacagagctgctttc--ggggtacgagtatacgctcttgaatgat--aggaaaatatatacaatttcagtaccacagtttattaga-tttttgtaattcaaaatttat---------- Spar.....: caaacggagcagctttc--ggggtacgagtatacgctcttaaatgacaaaggaaaatatatacgatttcagtaccacattttattaga-tttttgtaatttaatatttattcattcttgt Smik.....: caaacggggcagcgttc--agggtacgagtatacg-acttaaaagac--aaagaaaaatatacgattgcagtacgacaatttattaga-tttttgtaatttaatatttattcattcaca- Sbay.....: caaatagggcagcgttctgggagaacgagtataagctctcaaatgac-taagaaaattcatacgattttagtaccatagtttattagattttttgtaatttaatatttattcattctcgt consensus: **** * ** ** *** * * ********* * ** ** ** * *** **** *** ***** * * ********* *********** ** ****** 2160~2205: Spar.....: ttcgcaatcattggtgcggtgct---------------------- Smik.....: ttcgcaactagtgatgcgttattctgcgtgtagtcc......... Sbay.....: ttcgcaactgctctgcttgctgtcttgctgctatatagaatacac { alias......: [] chromosome.: 12 description: Hypothetical ORF end........: 988108 exons......: [(1, 80), (152, 1052)] gene.......: introns....: [(81, 151)] length.....: 1052 name.......: YLR426W plength....: 350 start......: 987057 tdist......: 90064 type.......: ORF up.........: 1 } Scer: 1 donors and 3 branches Spar: 4 donors and 2 branches Smik: 3 donors and 3 branches Sbay: 2 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 338), ('Spar', 338), ('Spar', 342), ('Smik', 338), ('Sbay', 338)] ->[('Spar', 376), ('Smik', 376)] ->[('Sbay', 1168)] ->[('Smik', 120)] ->[('Spar', 213)] ] [ ->[('Scer', 389), ('Spar', 389), ('Smik', 389), ('Sbay', 389)] ->[('Scer', 1627), ('Spar', 1627), ('Smik', 1627)] ->[('Sbay', 947)] ->[('Scer', 402)] ->[('Smik', 155)] ] 0~120: Scer.....: ---tataagatatagacacttttaatggtaaatatcgttgtaataatataagccaacaagaatatagtccagtaattatgctatttgcagtaactcacatca---ttattctctctgttc Spar.....: ---tataagatatagacacttttaatggtaaatatcgttgtaataatataaatcaataagaatataattcaataattatgctatctgcagtcactctcacca---ttattctcttcgttc Smik.....: ---tataaaatagaaacacttttaatggtaa-tatcattgtaacaatataaatcaaaaagaacatagtgaagaaactatgctattcgcagtcatgctgatta---tcatcctcttggctc Sbay.....: tataacataatatagacattccgaatggcaactaccgttgtaacaatatatgt----aagaacctaacatgataattctgcttacggcaatgatactcactactattattgtcttcacta consensus: * * *** * *** * ***** ** ** * ****** ****** ***** ** ** * **** *** * * * * * * ** *** * 120~240: Scer.....: atataatcctgaataacaggttaccctcggaagtgcattt-agccgtataacaagtagctcttt----aaaatcagtagaacag-atacattaata-tgtgataatacggctgtga-gga Spar.....: atatgatcttaaataacaggttaccctcagtgttacatt--aacgacgtaacacgtagtgcttt----aaagccaatagaatag-atatattagta-tgagaaaatacggctgtaa-aag Smik.....: gtatgatccataataacaggttaccctcagtggtttatt--aactatataacacgtactgcttt----aaaataggtacactattgtgtgaaagtactgccgtaatactgctgttacgaa Sbay.....: agatggaaactcttaagaagttacccttagcgatctctcttaccgaaataccacgtaatgcttttatgaacacctgctagatgg-atgtattagca-cataaaaatgtcccggcaa-ggg consensus: ** *** * ******** * * * * * ** ** *** **** ** * * * *** * * * Spar_spli: DDDDDDD Smik_spli: DDDDDD BBBBBBBBB 240~360: Scer.....: aaaggtgaagttctggtgATGAATATAGACTGTTTGTGTCGTTGGGTAGTTCTGCCACTGCTGCGCTATCCACTTCTGGTAGCTCTTGTATTGAGATGGTATGTAAAGTAGAAAATAGG- Spar.....: aaaagtggagtcctggtgatgaatatagactgtttgtgtcattggatagttctgccgctactgcgctatccacttctggtatctcttgtattgagacggtatgtaagttagaaaagaggg Smik.....: aagagtcaagttcttgtgatgaatatagactcattatgtcactgggtagttctgccgatattgcgctgtccacttctggtaactctcgtattgagacggtatgtaggttagaaagcggg- Sbay.....: tgaggagaagtttttggaatggatatagacggcttgtgccattgggtagtccttccgctattgcgttgcccacttctagtatcttttttattcaggcagtatgta--ttcgga------- consensus: * *** * * *** ******** ** ** * *** **** ** ** * **** * ******** *** ** * **** ** ******* * * * Scer_spli: DDDDDD Spar_spli: DDDDDDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >===================== 360~480: total....: ======= Scer.....: CATGAGGTTAGAAACAGCGT---TTTTTATACTAACATGACGAACTAA-CCTAGGTCTCTAAGCGACTCGATAAGCATTTGTCTAACAATCTATACACTACTGATAAATGCATTCCTCAT Spar.....: cattaagttagaaacggcatgtttttttatactaacattacgaattga-tctagatctctcagtgactcaacaagcatttgtttaacagtctacacactactgataaatgcctttctcat Smik.....: catcaaattagaaatggtatg----tttatactaacataatgaattaagtctagatctctgagtaattcaataaatctttatttggcagtctatacagtactggtaaatgcttttatcat Sbay.....: tgacaaattaaaaacggcaaa---tggcgtactaacatcatgagttacgcttagttctctaaatgagtcaataaacctgtatttagtactttacacagtactggtaaaccttttcctcgt consensus: * *** *** * ********* * ** * *** ***** * * ** * ** * * * * * * ** *** ***** **** ** ** * Scer_spli: BBBBBBB BBBBBBBB Spar_spli: DDDDDD BBBBBBB Smik_spli: DDDDDDDDDD BBBBBBB Sbay_spli: BBBBBBB known....: ====================================================>= 480~600: Scer.....: TGCTAATTCCTATATAAAGCGGTCGGGACAGGTCGCCTGGAAGAGCCTTCGTGAATTTAAGAATGGCATAGTTCTTATTACTGGAGGAAGTAAAGGACTTGGACGGGCCATAGTATCTCA Spar.....: tgccaattcctatataaaacgttccggacagatcacctggaagagtcttcgtgaatttaaaaatggcatagttcttgtgactggaggaagtaaggggcttggccgggccatagtatttca Smik.....: tttcaattcctatataaagcgatcaggacaaatcaagtggaagagtcttcgagaatttaaaaatggcatagttcttgtgactggaggaagcaaagggcttggacaggccatagtattgca Sbay.....: cactaattcctatataaaacgatcggggcacaacaattggaagggccttcatgaatctaaaaatggcATGGTTCTTGTCACCGGAGGAAGTAAAGGACTTGGACAAGCTATAGTACACCA consensus: ************** ** ** ** ** * ****** * **** **** *** ******** ****** * ** ******** ** ** ***** * ** ****** ** 600~720: Scer.....: ACTCCTACAAGACTACAGCAACCTGACCATCTTGAATGTCGACATATGCCCATCATCAGTGAGGAATACTCGCGTGAAGGATCTCATCTGCGACCTGAGTGATGATGAAGAAGTTGCAGC Spar.....: actcctacaagattacagcaacctgaccatcttgaacgtcgacatatgtccatcgccagtaagggatcctcgcgtgaaagatctaatctgcgacctgagcgatgatgaagaggttacagc Smik.....: gcttatacaaaattacagcaatcttaccgtcttgaacgtcgatatatgcccatcatcaATGAGGGATCCTCGTGTGAAGGACCTGATTTGCGATCTAAGTGATGAGGAGGAGGTCATATC Sbay.....: GCTCCTTCGAGATTATAGCGACCTGACCATCTTGAATGTCGACATATGCCCATCACTGTTACATAATTCCCGTGTAAAGGACCTAATTTGCGATCTAAGCGATGAGCGTGAAGTCACATC consensus: ** * * * * ** *** * ** *** ******* ***** ***** ***** * ** * ** ** ** ** ** ** ***** ** ** ***** ** ** * * 720~840: Scer.....: ACTACTGAATTTGTTGAAAAGAAAGTATAAAAATGAAATCCGATTGATTGTGAACAATGCTGGAGTAAGGGCCAACTTCACCGGATTCAACGGCATGGAACGGGATAATCTTGATAAGAT Spar.....: attactgaatttattgaaaagaaagtacaaaagtgaaatccggttgattgtgaataatgctggagtaagggcaaacttcaccggattcaaccgcatcaaacgtgaaaatcttgacaaagt Smik.....: CTTACTGGATATACTGAAAAGAAAGTATAAAGATGAAATCCGGTTAATTGTGAATAATGCAGGAGTAAGAGCAAATTTCACCGATTTCGACCACATGAAACGGGACAACCTCGATAAAGT Sbay.....: TTTACTTCATATATTGAAAAGAAAGTATAAAGATGAAATCCGATTGATTGTGAATAACGCTGGAGTACGAGCAAAATTCGCAGATTTCGATCGCATGGAACGAGACGATCTTGTCAAATT consensus: **** ** * ************* *** ********* ** ******** ** ** ****** * ** ** *** * * *** * *** **** ** * ** * ** * 840~960: Scer.....: TTTTAAGATAAACACATTTGCACCACTTCAGTTCATTCAAGAACTGGCCCCTAGTAGACACTCAACTAGACAGTGTTATATTGTCAATATCGCAAGCATTTTGGGCATATTGACGCCGGC Spar.....: gtttaagataaacacatttgcaccgctccagttcattcaggaattggcacccagtagacgctcgactagacaatgctatatcatcaatattgcaagcattttgggtatattgacgccggc Smik.....: GTTCAAGATCAACACATTTGCACCGCTTCAGTTCATTCAGAAATTGGCACCTAGTAAACATTCTACTAGACAATGTTATATCATTAACATCGCAAGCATTTTAGGTATATTGACACCAGC Sbay.....: GTTCACAATCAACGCATTGGCGCCCGTCCGTTTTGTTCAAGAACTGGCACCAAGCAAACACTCTACTAGACAGTGTTATATCGTCAACATTGCAAGTACTCTGGGGATACTAACGCCGGC consensus: ** * ** *** **** ** ** * * ** **** ** **** ** ** * ** ** ******** ** ***** * ** ** ***** * * * ** *** * ** ** ** Sbay_spli: BBBBBBB 960~1080: Scer.....: CAAAGTAGCAGCTTATGCGGCGAGCAAAGCAGCATTGATAGCCTTTCATCAGTCGTACAGTTTTGAATTGCAAAACGAAGGCGTAAGAAATATCAGAACACTATTAGTGACCCCAGGGCA Spar.....: caaagtagcagcttatgcggcgagcaaggcagcattgatagcctttcatcagtcgtatagttttgaattgcaaaatgaaggcgtaagaaatatcagaacgctactggtgaccccagggca Smik.....: TAAAATAGCAGGTTATGCAGCGAGCAAGGCAGCACTGATAGCCTTCCATCAGTCGTATAGTTTTGAATTGCAAGATGAAGGCGTAGAAAATATCAGAACATTATTGGTGACACCAGGGCA Sbay.....: CAAAGTAGCTGGCTATGCAGCGAGTAAAGCGGCCTTGATAGCCTTCCATCAGTCATACAGCTTTGAATTACAAAATGAAGGCGTAACGAATATCAGGACACTATTAGTGACACCAGGCCA consensus: *** **** * ***** ***** ** ** ** ********** ******** ** ** ******** *** * ********* ******** ** ** * ***** ***** ** 1080~1200: Scer.....: ACTGAATACGGAAATGTTTGCAGGATTCAAGCCTCCTCGCCAGTTCTTTGCCCCTGTAATAGACATTACTACTCTAGCTGCCAAGATAGTCCGTTATTGTGAGCTGGGTCAGAGGGGACA Spar.....: actgaatacagaaATGTTTGCAGGATTTAAGCCACCACGCCAATTCTTTGCTCCTGTAATTGATATTGATACTTTAGCTGCCAGAATAGTCAGCTGTTGCGAATCAGGTCAAAGAGGACA Smik.....: ACTGAATACAGAAATGTTTTCAGGATTTAACCCTCCACGCCAATTTTTTGCTCCTATAGTAAATGTTAACAGTTTGGCCACTAGAATAGTTCGCTGTTGCGAACTGGGTGAGAGGGGACA Sbay.....: ATTGAATACGGCGATGTTTGGAGGATTCGACCCACCGCATCAATTCTTTGCTCCTGTGGTAGACGTGAACAGTCTGGCCGCCAAAATAGTTCGTTGCAGCGAACTGGGCCAGAGGGGGCA consensus: * ******* * ****** ****** * ** ** * ** ** ***** *** * * * * * * * ** * * ***** * * * ** ** * ** ** ** Sbay_spli: DDDDDD 1200~1320: Scer.....: GCTAAATGAACCCTTTTATTGTAGTTTTGCTCATCTTTTGATGTGCGTACCTTATTCGCTACAACGCATTGTAAGAAGCTTCTCTCGCATAGATTGCTGCCTCCCGGACGAGTAGaaagc Spar.....: ATTGAATGAGCCCTTTTATTGTAGTTTTGCTCATCTCTTGATGTGCATACCTTATTCGCTACAGCGCACTGTGAGAAGCTTCACTTGTATAGATTGCTGTCTTCCGGACGAGTAGaaggc Smik.....: ACTCAATATGCCCTTTTATTGTAGTTTTGCTCATCTCTTGATGTGCATACCTTATTCGTTGCAACGTATCATAAGAAGTTTTTCTTGCATAGATTGTTGCCTTCCGGAAGAGTAGaaagc Sbay.....: GCTTAATGAGCCCTTTTATTGTAGTTTTGCCCACCTCTTGATGTGCATACCTTACTCGCTACAATATATAATAAGAAGCATCTCTCGCATGGATGGTTGTCTTCCGGACGAGTAGaagaa consensus: * *** ******************** ** ** ********* ******* *** * ** * * ***** * ** * ** *** * ** ** ***** ******** 1320~1440: Scer.....: tatacatagtaaatagaatatttatagatgaa--tccgagtagacagccttggtgtttgcttatacattctttgcaatta--------tgcacgccctcattaccgttgctcatattttt Spar.....: tatacacagtaaatacgatatttatagatgaa--tgcaagtgggcaggcttagtgtttgcttatattttctttgtaattacacgattatgcacgccctgaaaaccgttgctcttattttt Smik.....: tatatatagtaaatagaatagt-atagataaagatcagagtag-cagacttagtgctttctcatattttctttgtaataaaacagttgtgcacgctcttatatttgtcgctcatattttt Sbay.....: tatgtacagtaaatataacatttatagatcaa--tcggagcaggcaggcttagtgcgtgcttgaat-tcctttgtatcggcactgttgtgcacgccctaaagtgtcttgcttatattttt consensus: *** * ******** * * * ****** ** * ** * *** *** *** * ** * * ***** * ******* ** * * *** ******* 1440~1560: Scer.....: gg-gcattaattgtattttgaaaa-gtgctcgttcaggcccg-tgtaaaaaaa-ggtgatgaagcaaacattat--aataaacacttctgagaagccacgtgtagaggggtaagctatat Spar.....: gaagcattaatt-tgctttgaaaa-gtgctcgttcagggccggttcaaaaaaa-ggtgatgaagcaaacatt----aataaacacttctgacaagccacgtgtagaggcataagctatat Smik.....: ggagcattgattgtgttgtgaaaaagtgctcgttcatggccgattcaaaaaa--ggtgatgaagcaaacgtt----aataaacattactgagaagccacgtgtagagggataactcacat Sbay.....: aaattattaattatgctgtgaaaa-gtgctcgttcatgaccgttctaaaaaaaaggtgatgaagcaaaccttaataaagaaggacttttgagaagccacgtgtggaaggaggatcaatat consensus: *** *** * * ****** *********** * *** * ****** *************** ** ** ** * * *** *********** ** * * * ** 1560~1648: Scer.....: cgtaaac-accgttggatgtggaccacggtgcactgataaaataaagatatagtagtagaatct-gttactaatcttaaca-cttttg Spar.....: cgtaaac-actgtttgatgtggactgcggtgcactgataaa-caaagatatagtagtgtaatct-gttactaatcttaata-cttttg Smik.....: tgtcaat-atcctttgatgtggactgcggtacactaataaaatagagatatagtagtggaactt-gttactaatcttaaga-cctttg Sbay.....: cttagaccaccctttgatgtggactgcagtgcactggtata-gagggatatagtcgtggacttttgctagtaatcttcacaacctccg consensus: * * * ** ********* * ** **** ** * * ******** ** * * * ** ******* * * * * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB { alias......: ['RPL6B'] chromosome.: 12 description: 60S ribosomal subunit protein L6B (L17B) (rp18) (YL16) end........: 1029762 exons......: [(1, 15), (400, 915)] gene.......: RPL6B introns....: [(16, 399)] length.....: 915 name.......: YLR448W plength....: 305 start......: 1028848 tdist......: 48410 type.......: ORF up.........: 1 } Scer: 8 donors and 2 branches Spar: 0 donors and 0 branches Smik: 4 donors and 3 branches Sbay: 0 donors and 0 branches [ ->[('Scer', 980), ('Smik', 980)] ->[('Scer', 1992), ('Smik', 1992)] ->[('Scer', 253)] ->[('Scer', 345)] ->[('Scer', 824)] ->[('Scer', 2516)] ->[('Scer', 2554)] ->[('Scer', 2567)] ->[('Smik', 317)] ->[('Smik', 382)] ] [ ->[('Scer', 1324), ('Smik', 1324)] ->[('Scer', 480)] ->[('Smik', 500)] ->[('Smik', 2227)] ] 0~120: Scer.....: cttcgcaagactttagcaacacgatccgaatggtatactcttttgctagctcttagcgttctttatgccataccttaaagggttaagaggtc-aattgttcttttgtttttgcagtatat Smik.....: cttcgcaagactttagcaatacgatcttaacaaaatgctcttctggttgctcttgatcttattcctgctataccttaaagggttaagaggtttaactgttcttttgtttttgtaggatat consensus: ******************* ****** ** ** ***** ** * ****** ** ** *** ********************** ** **************** ** **** 120~240: Scer.....: cgaagatattttaaaaatacgtcactttgtacgcagatatcagcgtaacaataggtgcgcggaaattacttagttccataatacaagaatctgctgactttgcgtctgtaagataagaag Smik.....: tgaagatattttataaatgcgtcactttgtacgcgcatatcagcgcaacaataggtgcgctgaaatcgctttattatacaacacaagaattcgctaaatttgaccctg----atgataag consensus: ************ **** *************** ********* ************** ***** *** ** * ** ******** *** * **** *** ** * *** 240~360: Scer.....: ggtacggcccagagtatgaatcgttgggggatgaaatcactttttcatcttcctacaattcattttgtccttgaaatacataataacaaaatattaatgaaacttgcatgttaccaaata Smik.....: agtgcactttggtgtcttaatattcaggaaggatgggcatcttcccatcattcatcattcatttccctccttgagatgtatga---cagaatacc---gaaatgtgt---------aata consensus: ** * * ** * *** * ** ** ** **** * * ** * ** ******* ** ** * ** **** **** ** **** Scer_spli: DDDDDD DDDDDD Smik_spli: DDDDDD 360~480: Scer.....: acttgaacttcagcacttctatttgtataccagtatcacagcattcagcaaatttgattatctctcatgcttcatgtcctaccttttttccttctttcttccttgtcttaatctgaaagt Smik.....: -cttcggtatcagtatctctatgtatgcaccgctaagtcatccttccataagtttgattttgcctcat--------------cttccttactgatgctgtcttcgtattgaaaagaagtt consensus: *** **** * ***** * * *** ** ** * *** ** ******* * ***** *** ** ** * ** * ** ** * *** * Smik_spli: DDDDDD 480~600: Scer.....: tactaataataataaagacaaaatatcacccatgcac-caaaatgtatgggtcataattttttttc--ttgccttcaaaaatcgttgttagctgcaaaatggcggtgaaacacatagttg Smik.....: tgtgggtg-----aaagacatactaacacccatacatgttagatgtatgggctttcgtttcattttaattttctcctgaaattttattgaggcgcgaactgaaggtaggagtagttactg consensus: * * ******* * ** ******* ** * ********* * *** *** ** ** * **** * * ** ** ** ** *** * * ** Scer_spli: BBBBBBB Smik_spli: BBBBBBB 600~720: Scer.....: tggttatgcgtcccctccgggcggccgcagatggaggatgcccccatgtgctgattctccccgtaggcggcgagtaatatcctcgcctaacctggacttgcc-gtgctaagtcggccttc Smik.....: taaatatgcgtctctgccgaatagttgctatggggtgggagttactgacgcccgtcctccacgcgggtggcgaaaaatgcctcttgtttacgtagactcgtttgctctaggctggtcttc consensus: * ******** * *** * ** ** * * ** * **** ** ** ***** *** * * ** * **** * * *** * ** **** 720~840: Scer.....: ta-gctgcgcttccgttcagcatcgtttacggtagagggagcacatgggcggaaacaaacctcattctggtcctgtgcttgcccatttgcactgtatagagtgtgtgagtttcaattaat Smik.....: tgcgcagtggttccgttcaggaatgcctacggtagagggagcaaatgggcggaaacgagcttcactctggctccaagcttgccctcccgccttgcatagtgtgaatgagattctatcaat consensus: * ** * * ********** * * **************** ************ * * *** ***** * ******** ** ** **** *** **** *** ** *** Scer_spli: DDDDDD 840~960: Scer.....: gttgtaggcgcgaggccctgtaatatggcagttgatcaaaagtcaatagataattttcaagcaaaatctcatttaggtttgactactttcttgaacttggaagagaagcaaatatattca Smik.....: gctgtaggtgcaagtacctgcaatatggcgattgatcaaaagtgtaaagataatttcaaagcatatcttcactttattttgtattctttcttgaacttggaagagaagcaaatatattca consensus: * ****** ** ** **** ******** ************ * ********* ***** * *** ** **** * *********************************** 960~1080: Scer.....: acgaaATGACTGCCCAACAAGTATGTGTAAAGATGAGTAAATTGAAGGATGTGATGGTTATGGAGATGGCACACGTGCCTAGAGGAAAATAGTTACCCAAGAA-CAAAAGCAGGAAGGGA Smik.....: acgaaatgactgcccaacaagtatgtgtaaagatgagtaaatcagaggttgagatggcaacagagatggcacatgtgcctatggagatataatcacacaagaaacatccgcgatatgaaa consensus: ****************************************** *** ** ***** * *********** ******* * * *** * ** ****** ** ** * * * Scer_spli: DDDDDD Smik_spli: DDDDDD known....: >=================================================================================================== 1080~1200: Scer.....: GCT-AACCTTTTAAATATGAACTGGACAAAACTGGACAAAATGAAAATAACGATTTTAGTAAAAATGAAAATATAGCATC--AAATGACTGAGAAACATAGTAACAATAACTCATATTAT Smik.....: gttgaatcttttccatataatcggga------------agatgaagatgataaaactatcagatgcataactttgatatttgaaaagccagaggaatacgataacaatggttaacattac consensus: * * ** ***** **** * * *** * ***** ** * * ** * * ** * * ** *** * * *** ** * ******* * * **** known....: ======================================================================================================================== 1200~1320: Scer.....: AGCTAATCTGAGTAAACTTCTTCCTACGCTAAGAATTTTTTTGAGGATAGTACCAAACCTTGTGCTGAATCAGCACACGCCATGCCCACCATCAATTGTGCAAGAAAAAAGTAAACGAGT Smik.....: aactacactagatgcactt-ttcctat-ttaataactcttgagct-atgatatcgt-ctgtgtgttaagcctgtaaa-accattcccaacacgaactgta-atgaaataaaaaagagcaa consensus: * *** ** * **** ****** *** ** * ** * ** ** * * **** * * * * * * **** **** ** ** *** * **** ** ** * known....: ======================================================================================================================== 1320~1440: Scer.....: AGTATACTAACTATATATGTGATTTACATCACGATATGTCAATTATAGGCCCCAAAGTGGTATCCTTCCGAAGACGTTGCTGCCCCAAAGAAAACCAGAAAGGCTGTTCGCCCACAAAAG Smik.....: tttttactaacaatttatATGATATACATCATAATATGTCAATTACAGGCCCCAAAGTGGTATCCTTCCGAAGACGTTGCTGCCCCAAAGAAAACCAGAAAGGCTGTTCGCCCACAAAAG consensus: * ******* ** *** **** ******* ************ ************************************************************************** Scer_spli: BBBBBBB Smik_spli: BBBBBBB known....: ==============================================>= 1440~1560: Scer.....: TTGCGTGCCTCTCTAGTTCCAGGCACTGTTTTGATCTTGCTAGCTGGCCGTTTCAGAGGTAAGAGAGTTGTCTACTTGAAACATCTAGAAGACAACACTCTATTGGTCACTGGTCCATTC Smik.....: TTGCGTGCCTCTCTAGTTCCAGGGACCGTTTTGATCTTGCTAGCCGGCCGTTTCAGAGGTAAGAGAGTTGTTTACTTGAAGCATCTAGAAGACAACACTCTATTAGTTACTGGTCCATTC consensus: *********************** ** ***************** ************************** ******** *********************** ** ************ 1560~1680: Scer.....: AAGGTCAATGGTGTTCCATTGAGAAGAGTCAACGCTCGTTATGTCATTGCTACCTCTACCAAAGTCTCCGTGGAAGGTGTCAACGTTGAAAAATTCAACGTTGAATACTTTGCCAAGGAA Smik.....: AAGGTCAATGGTGTTCCACTAAGAAGAGTCAACGCTCGTTACGTCATTGCTACCTCCACCAAAGTCTCTGTTGAAGGCGTCAACGTTGAAAAATTTAACGTTGAATACTTCGCCAAGGAA consensus: ****************** * ******************** ************** *********** ** ***** ***************** ************** ********* 1680~1800: Scer.....: AAATTGACCAAGAAGGAAAAGAAGGAAGCTAACTTGTTCCCAGAACAACAAACTAAGGAAATCAAGACTGAACGTGTTGAAGATCAAAAGGTTGTTGACAAGGCTTTGTTGGCTGAAATC Smik.....: AAATTGACCAAGAAGGAAAAGAAGGAAGCTAACTTGTTCCCAGAACAACAAAACAAGGAAATCAAGACCGAACGTGTTGAAGATCAAAAGGTTGTTGACAAGACTTTGTTGGCTGAAATC consensus: **************************************************** ************** ********************************* ***************** 1800~1920: Scer.....: AAGAAGACCCCATTGTTGAAGCAATATTTGTCCGCTTCTTTCTCTTTGAAGAACGGTGACAAGCCACACCTATTGAAATTCTAA---attgaactgaaaaaattataaatgatttaaaa- Smik.....: AAGAAGACCCCATTATTGAAGCAATATTTGTCTGCCTCTTTCTCTTTGAAGAACGGTGACAAGCCACATTTATTGAAATTCTAAgaaattggacagaaaaaattataattgatttaaaaa consensus: ************** ***************** ** ******************************** ************** **** ** ************* ********** 1920~2040: Scer.....: tagaatttcaaaacaaggagaattgatagagaatgcgttgatctgaaaatactgtttgacaataacggaaaggtaagtggatatgtaatctaagtttaatcctcttctaattcatttttc Smik.....: ttgaacttcaaagcaaggagaattgatagagaatacgttgatctgaaaatactgcttgacaataa-agaaaggtaagtggatatgtaatctaaatttaatcctcttctaattcatttc-c consensus: * *** ****** ********************* ******************* ********** ************************** *********************** * Scer_spli: DDDDDD Smik_spli: DDDDDD 2040~2160: Scer.....: ctatcaacattatctgtgcttttctatatccttctttttgtatctataattttttttttctcttacatagcaaaatacaaaaaatcataaatattaatatctaagggttcaagatcaggt Smik.....: ctatcaaccttatttgcacttttctatatccttctttttgtatctataattttttttttcttttacatagcaaaatacaaaaaatcataaatattagtatccaaggattcaaagttagat consensus: ******** **** ** ******************************************* ********************************** **** **** ***** * ** * 2160~2280: Scer.....: catcgccgttctggg----ccactaggctatatctattcattta--cattggaagctgcatggtctactccaaccgcactgaggcaaagtctctgtggaggaaatgctgtcctagcgagc Smik.....: tgttgtcttttcggctattccgttagggcac-tctatcggtacagccattgtgtatt-tacaatctgcactaaccacattaaggcaaatccgctcatgaagaaa-------------agt consensus: * * * ** ** ** **** * ***** * * ***** * * *** * * **** ** * ******* * ** ** **** ** Smik_spli: BBBBBBB 2280~2400: Scer.....: cattgcaataggtataatcagagtcgtcctcc----caatgtg-ttaacttctctcaaaaccaccatataaattctgtaacctgccagcgataatgttatatatgtaaaaggtaaacata Smik.....: ca-------aggtacaatcaaggtaatattctgtgataatgtacttcaatttttttgaaatcgccgt-tacactcgaaactttattaccattaacgctatacatgtatggagtagtaaag consensus: ** ***** ***** ** * ** ***** ** * ** * * *** * ** * ** * ** * * * * *** * **** ***** *** * 2400~2520: Scer.....: caacccaatttgtccatactaagtggatgctggggaagcaactacagtgcagatgctaaagtttgctgcggcaaataatctcaacatttttgtgattaaacctgcctcagtggggtgtat Smik.....: tagtcagattggttcatac-gactagacatctagcagaccgttacatcgtgagctttagagcttgttgtggcagatgattttgtcattttttcatataaacctagaaaagtggggagttt consensus: * * *** ** ***** * * ** * * * **** * ** ** *** ** **** ** ** * ******* ******* ******* ** * Scer_spli: DDDD 2520~2640: Scer.....: gattagtgcgttgatatttaatacacgcgtaaaagttaa-gtctgttgtacgttttatttcgagtgacgaaagaactacgaataacttcctgcatactgttgcctttttctgtatttacg Smik.....: a--tacttggtaagaa--caatcctcactaagacatcgctacccatccaatttaatcaatcaaagaatgagaatactgcatataatatt----atgctacgttttctcactattttttc- consensus: ** * ** * *** * * * * * * * * * * * ** * * ** * *** * **** * ** ** * * ** * *** * Scer_spli: DD DDDDDDD DDDDDD 2640~2760: Scer.....: tatacttttatatcaaatagcttggccaa-aagaaagtagcattgtgtatcaagtcataattctaattcttagtttaacttcagcaaaaataatattcttcgtcagacattctcatacaa Smik.....: tgcactcttatatccaattgcctagcaaacaaaaaaactatttggtgtatcaaatcaaaacttccacttttatgataacctcagcataattaatgttccctattgctaatttgctcttta consensus: * *** ******* *** ** * ** ** ** *** * ********* *** ** * * * *** **** ****** ** **** *** * *** * * 2760~2880: Scer.....: tcattaacccatatgaacgttaaatttctcaatttcttgccttcgatgccctatgtatatttttatctcaaacccgaggcagtgaaaattttagctggtgca-tcgaaaaga-----gaa Smik.....: tttcaacatcttctgt---tcaaatt-----aattcatgctttcgatgccctatgtatttttttatctcatgcctaaggcggcgaaaattttaactggcgaagttgaaaaggcaaaggaa consensus: * * * * ** * ***** * *** *** ***************** *********** ** **** * ********** **** * * * ****** *** 2880~2972: Scer.....: gggcattgaaaattttacagtgttaaaagaagtgcttttcatgttagaatgataagaaaaaagaaaaagacaacaaaatatacgtctctacc Smik.....: gggcattgaaaattttaccatattaaatgaagtacttttcagttttaacta----------------------------------------- consensus: ****************** * ***** ***** ******* ** * * { alias......: ['RPS17A', 'RP51A', 'RPL51A'] chromosome.: 13 description: Ribosomal protein S17A (rp51A) end........: 226697 exons......: [(1, 3), (402, 809)] gene.......: RPS17A introns....: [(4, 401)] length.....: 809 name.......: YML024W plength....: 269 start......: 225889 tdist......: 225889 type.......: ORF up.........: 1 } Scer: 3 donors and 2 branches Spar: 3 donors and 2 branches Smik: 5 donors and 1 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 891), ('Spar', 891), ('Smik', 887), ('Sbay', 891)] ->[('Scer', 973), ('Spar', 973), ('Smik', 973), ('Sbay', 973)] ->[('Spar', 241), ('Smik', 241), ('Sbay', 241)] ->[('Scer', 758), ('Smik', 762)] ->[('Sbay', 302)] ->[('Sbay', 1977)] ->[('Smik', 1665)] ] [ ->[('Scer', 1348), ('Spar', 1348), ('Smik', 1348), ('Sbay', 1348)] ->[('Scer', 1944), ('Spar', 1944)] ->[('Sbay', 183)] ] 0~120: Spar.....: caattttcgtctagaaaacccgttttcacttctaccgggaggattcgaggcacctacccttctattatcattttcataaacgacggctttccatagtatatcacgccttaatggagcagc Smik.....: caatttacgtctagaaaacccgttttcacttctaccgggaggatttgaagcacctactcttctgttatcattttcaaaaacaacggccctccagagtatatcacgccttagtggagcagc Sbay.....: taatttacgtctggagaacccgttttcacttctgccgggagggtttgatgagcctactcttctattatcgttttcataaacaacggctctccaaattatatcacgccttaatggagcagc 120~240: Spar.....: tacagttgatgtggggactggcacaaatgttaatggttctaaagatggaaacgaacgaacggtaactaaggcatatttgggtggaatggctgcgtttggcagaggattcaacacggtttc Smik.....: tacagttgatgtcgggactggcacaaatgttaacggttctagagatggaaacgaacgaacagtcactaatgcatatttgggaggaatggcagcgtttggcaaaggatttaacttggtttc Sbay.....: tacagtcgatgcggggacgggtacaaacgtcaacggttctaatgatggaaacgaacgaacagtcactaacgcgtatttgggaggaatcgctgcatttggcaaaggattcggtatggtttt Sbay_spli: BBBBBBB 240~360: Spar.....: tgcatgtgtggtggcattggtagcttggtagcgtatagattgcaaagtctattgcgtaaattgattgcaatgttagtatacgggttcatctttcaaaaaatcaacaagcaaatgaaagaa Smik.....: tgcatgtgcggttgcattggttgcttggtagcgtatagattgcaaagtctattgcacaaataggatataaggttagtacatgggttcaccctttagaaaattgatagataacgaaagaaa Sbay.....: tgcatgtgcggtagcattcgtagtttggtaacgtgtaaattgtaaagcctgtaacaaaagtagtatgcaaggttagtatatggattcattgttca-aaagcaataaaatggaaaatgaag Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD DDDDDD 360~480: Scer.....: ----------------------------------------------tattattatttcaccctag---------ttgaacgaaagattattcgcattggcgtccttt--gaatgtatctc Spar.....: aaacgaaaagcgatcttcttatacgtactttcaccaaatttctcttcattgtcattattattacgtcagcctagttaatgaaaaaataagtcgcattagtgttctttccgaaatgtatag Smik.....: aacataagatgattttctcatacatactttcaccaaatttctctt-caacgtcattattattcag---------ccagctagttaataagtcgcatcagtgtcctgt--ggagtgtgcgt Sbay.....: gacg------gcttgtcatgtacatactttcaccagatttctttt-taaagtcattgttattttggc-------ccaactagctcgtaactagcattggtctcttga--ggaatctatag consensus: * * *** * * * * **** * * * * * 480~600: Scer.....: cc------ccattattaatggaacctctg-tattatacttttctatttcgaactttttgagactcattcttggtatcccagggtgaccc-agta-----accttttttccggtttaacat Spar.....: ac------ccaccataaaccgaactcatg----tattcctttctattttgaactt--tgagattatttcttgacatgcccgggtgacccggcaa-------ctttttttccgctgaacat Smik.....: tt------ttattatgaatcggatctat----tcattcctttctgtcgtgaacat--tagaattacttcttaaaatcccagggttaccccaaca-----aacttttttttggttcagcac Sbay.....: ctatagccctattatagatcggaccactcgttccctttctttctactttgaacat--tgaaattgtttctagaaaatatagagtaacccggaagtgggtatttttcttcctgttgtacac consensus: * ** * * * * * ***** **** * * * * **** * * ** **** *** ** * * ** 600~720: Scer.....: ccgtgcattacatccgtacattctatttt-ttattttccaaaaaactgggagttctacttaatttttt-ggccccgtttgggaatctgctttgccacaggaggcggcctgtccaggagga Spar.....: ccgaacattccatccgtacattaatatttcttatttttcgagaga--aggagttttatttgattttta--tcccagcttggtaaacaggcatgccgtagcgggcggcctgattagaaggg Smik.....: ccgaacattacatccgtacatttcataaaactatttttcggagga--aatagttttactttatttttt-tggcctggctt--aatatactt-gtcatggtaggtcctttgcccagaaggg Sbay.....: ccgtaccgtccacccgtacagtttttgggtttttttttatttagtttcagacgggcatttctctcatcataatctgtttcggtaactgttccgccaccacaggcgtttggcttagcagct consensus: *** * * ** ******* * * **** * * ** * * * * * * * * ** * ** ** 720~840: Scer.....: caatagaccaatggcagagacga-ggtttgttg----ggtacgtgcaaca----gcgcctgggctcagccgg---cttgctgtgggcaacggaa-tggtgcttcctaagccaatctttca Spar.....: cgaaagaccactgacgcagccga-agtttgtt-----gggacgcgcaaca----gcgcttaggcccgtccgg---cctgttgtggatgacagag-cggtcctttctaagccaatctttca Smik.....: cgcgacaccatctgttccgttgaaggtctgttctgttggtgtgtatgacacagtacgcctaggctccttcgggggttggttgtacacgacaggg-ccgt-ccttctaggacaatctttca Sbay.....: cgcgagcctagaggcccggctgaggatttgtttagttgggaggagagata--gcgcgtctaggctcatgcg----cttggtatccgcaacgggggtggttctttccaggctaattcccca consensus: * * * * * ** * **** ** * * * ** * *** * ** * * * ** * ** * * * * * *** ** Scer_spli: DDDDDD Smik_spli: DDDDDD 840~960: total....: ====== Scer.....: tgctgtagctatcgtcgtgatcgcttttactggcatattagc--gtaatatgtatgaaattaggtattaatcaagcattaatcgacttaattctaagaaaagtcaagatctcgagactag Spar.....: tgccccagccatcgtcgcgatcgcttttactggcatattagc--gtaatgtgtatgaaattagagattaattcagcactaatcgacttaattcttagaaaaatcaagatctcgagactag Smik.....: agctcttgctatcgtggcgatcgcttttgctgccatattagt--gcggtatgtacgatattaaacgctaatcgagcgttttttgattcaactctaacaaataccaagatctcgagactag Sbay.....: agctctcaccatcgttgtgatcactttcgctgccatattagcacgtaatatgtatgaaatttgtgattattagtgcgttaatgagtacgattcggaagaagacaaagatctcgagactag consensus: ** * ***** * **** **** *** ******** * * **** ** *** ** * ** * * * ** * ** **************** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 960~1080: total....: ====== Scer.....: caataacaaaATGGTATGTTAAT-ATGGACTAA-A--GGAGGCTTTTAAGGACACGTAATATTGA----GT-CGACATGCGC------AATAAAGTCATACAATAA----ATAAGTTAAA Spar.....: caataacaaaatggtatgttaattataagctaatattggaggtttgagaggacacatag-attga----at-cgacatgccc------aataaagtcatccaacaaa---acagttaaaa Smik.....: caataacaaaatggtatgttaat-ataagctaa-gatgagggtttgcaaggaca-gtaatattgattgaat-cgacataggt------aataaagttatgcaaaga----agagtttaaa Sbay.....: caataacaaaatggtatgttaaa-atagagtaa-gcgtaggagttatcaaaatacgaaatatcgaattgacgtggcatatttgttcaaaataaaagtcaacagtagttataaaattcgaa consensus: ********************** ** *** * ** * * * * ** ** * *** ****** ** * * * ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >========================================================================================================== 1080~1200: Scer.....: G-------AAAACATATGAC---GATATTTTCAGACGATATGGAACTGCGATACCGAAAAAGTGGTGTGATTGAAATGATACTCATGTTT-TGGCTAT---AGTTGCAGTGGCTTT-CCA Spar.....: gaaag---aacataaatgac---gaaatttccgcacgatgtgaaactatagcaataaaaa-gtgatagaattgaaacggtgctcaagttt-tggctgttatggctgcggtgggttttcca Smik.....: cc------agaattcgtgac---gaaattggaagacagcatgaaaccatagcaccagaaatatgatgggactgaagtgaattgcaaattt-tggctactc-ggtagtagtgggctt-cca Sbay.....: gacatctcaaaacatggcaccaaaagagcgacggggagcccagagctaataaaccaagaaaactttaaaaagaaggagaatgaaagggacatttctaagc-gaccagggccaagaa-cca consensus: * * ** * * * * * ** * * * * * * ** * *** known....: ======================================================================================================================== 1200~1320: Scer.....: AAAAATTGGGAGTTAAAATGCCTATAGCAGTATCACCGGAGATTCAGTCTCTTGTGGATCTTCTTTTTGCATA-GTTGAACAAGGG--ATAATATGGCGCCATGAACTGCCTCTACACA- Spar.....: acaagttggaggtaaata--cctgttgcagtattagaggaaattcggtttcttctggattttctttgtgtatttgctgaacaaggg--acaatatgacgtcatgaactgcctctacacgt Smik.....: acaagctggagatgaaaa--cctgttgaagtattagaggaagaacagcaacttgtggtagctctttttgtatatattgaataaggg--ataatatgacgttacggactgcctccacgcaa Sbay.....: ttatatggcgagcttttcaacaagtaggggaatcgaaagaagcaaagccccattattgaatcttctttgtacatgtcaaggcaggagaacaatatcacgtcatgcatagcctctacaca- consensus: * * * * * * ** ** * * * * * ** * * *** * ***** ** * * * ***** ** * known....: ======================================================================================================================== 1320~1440: total....: ======= Scer.....: -TTATAATGTGTTTTTG--ATATCAGTATACTAACAAGTTGAAT-TGCATT--TACAAACTTTTTATTTTGT-----ATTGCTTTTCGTCATTTTAATAGGGTAGAGTTAGAACCAAGAC Spar.....: accataacgtgttttcg--atatcagtatactaacaagttaaaaattcatt--tacaaattttttattttgt-----aatgttttccgtcattttaatagggtagagttagaaccaagac Smik.....: actacaatatacttttg--ataacagtatactaacaagtaaaaa-ttcatt--tacaaacgttttgttttgt-----tatgttttttgtcatctcaatagggtagagttagaaccaagac Sbay.....: ---acaatttacttctattatatcggtatactaacaaacaaaaaatacattgttaccaacattttgtttggtgaacattctattttcctcttttaaacagggtagagttagaaccaagac consensus: * ** * ** *** * ************ ** * **** *** ** **** *** ** *** ** * * ** ********************** Scer_spli: BBBBBBB Spar_spli: BBBBBBB Smik_spli: BBBBBBB Sbay_spli: BBBBBBB known....: ==================================================================================================>= 1440~1560: Scer.....: CGTCAAGCGTGCTTCTAAGGCTTTGATTGAACGTTACTATCCAAAGTTGACTTTGGATTTCCAAACCAACAAGAGACTTTGTGATGAAATCGCCACTATCCAATCCAAGAGATTGAGAAA Spar.....: cgtcaagcgtgcttctaaggctttgattgaacgttactatccaaagttgactttggatttccaaaccaacaagagactttgtgatgaaatcgccactatccaatccaagaggttgagaaa Smik.....: cgtcaagcgtgcttctaaggctttgattgaacgttactatccaaagttgactttggatttccaaaccaacaagagactttgtgatgaaatcgccaccatccaatccaagagattgagaaa Sbay.....: cgtcaagcgtgcttctaaggctttgattgagcgttactatccaaagttgactATGGATTTCCAAACCAACAAGAGACTTTGTGATGAAATCGCCACCATCCAATCCAAGAGATTGAGAAA consensus: ****************************** ********************* ******************************************* ************** ******** 1560~1680: Scer.....: CAAGATTGCTGGTTACACCACCCATTTGATGAAGAGAATCCAAAAGGGTCCAGTTAGAGGTATCTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGACCAATACGTCCCAGAAGT Spar.....: caagattgccggt..................................................................gaagaagaaagagaaagaaaggatcaatacgtcccagaagt Smik.....: caagattgccggttacaccacccatttgATGAAGAGAATCCAAAAGGGTCCAGTTAGAGGTATTTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGACCAGTACGTTCCAGAAGT Sbay.....: CAAGATTGCCGGTTACACCACCCATTTGATGAAGAGAATCCAAAAGGGTCCAGTTAGAGGTATTTCTTTCAAATTGCAAGAAGAAGAAAGAGAAAGAAAGGATCAATACGTCCCAGAAGT consensus: ********* ***************************************************** ************************************** ** ***** ******** Smik_spli: DDDDDD 1680~1800: Scer.....: CTCTGCTTTGGACTTGTCTCGTTCTAACGGTGTTTTGAACGTTGACAACCAAACTTCTGACTTGGTTAAATCTTTGGGTTTGAAGTTGCCATTATCTGTTATCAACGTTTCTGCCCAAAG Spar.....: ctctgctttggacttgtctcgttccaacggtgttttgaatgttgacaaccaaacctctgacttggttaaatctttgggtttgaagttgccattatctgtcatcaacgtttctgctcaaag Smik.....: CTCTGCTTTGGACTTGTCTCGCTCTAACGGCGTTTTGAACGTTGACAACCAAACTTCTGACTTGGTTAAATCTTTGGGTTTGAAGTTGCCATTATCTGTCATCAACGTTTCTGCTCAAAG Sbay.....: CTCTGCTTTGGACTTGTCTCGTTCTAACGGTGTTTTGAACGTTGACAACCAAACTTCTGACTTGGTTAAATCTTTGGGTTTGAAATTGCCATTATCTGTCATCAATGTTTCCGCTCAAAG consensus: ********************* ** ***** ******** ************** ***************************** ************** ***** ***** ** ***** 1800~1920: Scer.....: AGACAGACGTTACAGAAAGAGAGTTTAAaattaaattagaaagctatttaaaataatttactattcaaaa-tatttgccttttcttttttaatttttgtttattcttta--atgtataat Spar.....: agacagacgttacagaaagagagtttaaaattaaattagaaagctatttaaaataatttactattcaaaa-tacttgccttttcttttttaatttttgtttattctttttaatgtataat Smik.....: AGACAGACGTTACAGAAAGAGAGTTTAAagttaaattagagagctatttataataatttactattcgaaa-tatt-gccttttcttttttaatttt-gtttattctttat-atgtataat Sbay.....: AGACAGACGTTACAAGAAGAGAGTTTAAaattaaattagaaagctatttaaaataatttactattcaaaaatatttgccttttcttttttaatttttgtttattcctta--atgtataat consensus: ************** ************* ********** ********* *************** *** ** * ******************** ******** ** ********* 1920~2040: Scer.....: taaataaaaaaatattattatatttactaattaagagcgaagcgtt-ttatgtagctccttggccatacatacattgcgcgcaatgtttatgctttgataccaaagggctatcatctttg Spar.....: taaataaaaaaatattattatatttactaattaagcgaaaagtgtt-tcgtgtagctctttgatcatacgtacattgcctgccatgtttgctctctga-attaaagaattatcattattg Smik.....: taaa--aaaaaatacgattatatt-atcacgtaggtggattatgttcttgtgtggctctctgtaaccatgtaaattgcccgcaatgttg--------------------------cactg Sbay.....: taaataaaaaaatatgattatatttatcaatttgtttcatcttcct-tttcattggtgtatg-cttcggattggcttcttttgaggctaaacaagtgtta-------actattatctcgc consensus: **** ******** ******** * * * * * * * * ** * * * * * * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: DDDDDDD 2040~2160: Scer.....: acttggaattatttatattttttaacattgactct-gtttcctttcttactcattatacttatccaga-aaaaatagaaaaattagttac------------------------------ Spar.....: acttgaaattatttacattttttcacatttgccct-acttcttttcctacccacaactgtcatccaga--ataataaaaaagttggttac.............................. Smik.....: gctttgaactatttatgtttttttccattttctccagtttctttacttatctatttctattatcaaaataaaaatactaaagggattcgatttttatgctatac---------------- Sbay.....: acttcaaattatttacctttttttacgactt------tcttatttctggcaccccccgtccaaacaataggaaatattaaaattattcatttatagtgctattaggatataatatatagt consensus: *** ** ****** ****** * * ** * * * **** *** * 2160~2251: Sbay.....: tcaagactactggtgaaatttaatagtaaatatttctataatatcaccgaagaggacaaaaaggatcttatgtttatctaaatgcatttct { alias......: [] chromosome.: 13 description: Protein required for cell viability end........: 225365 exons......: [(1, 27), (127, 960)] gene.......: introns....: [(28, 126)] length.....: 960 name.......: YML025C plength....: 320 start......: 224406 tdist......: 224406 type.......: ORF up.........: 0 } Scer: 1 donors and 2 branches Spar: 11 donors and 4 branches Smik: 6 donors and 5 branches Sbay: 7 donors and 4 branches INTRON SPLICING FOUND!! [ ->[('Spar', 1403), ('Spar', 1407), ('Smik', 1403), ('Smik', 1407), ('Sbay', 1403), ('Sbay', 1407)] ->[('Scer', 1195), ('Spar', 1195), ('Smik', 1195), ('Smik', 1199), ('Sbay', 1195)] ->[('Spar', 2826), ('Smik', 2826), ('Sbay', 2826)] ->[('Spar', 3191), ('Smik', 3191)] ->[('Sbay', 2268)] ->[('Sbay', 2329)] ->[('Sbay', 2387)] ->[('Spar', 267)] ->[('Spar', 552)] ->[('Spar', 851)] ->[('Spar', 1028)] ->[('Spar', 1755)] ->[('Spar', 3134)] ] [ ->[('Scer', 1265), ('Spar', 1265), ('Smik', 1265), ('Sbay', 1265)] ->[('Scer', 1621), ('Spar', 1621), ('Sbay', 1621)] ->[('Spar', 3199), ('Smik', 3199), ('Sbay', 3199)] ->[('Spar', 602), ('Smik', 602)] ->[('Sbay', 2654)] ->[('Smik', 1138)] ->[('Smik', 2709)] ] 0~120: Spar.....: ------------------accggcaatcttgtttctcaacctcttggattggatagtggcgatttcatcacaaagtctcttgttggtttggaaatccaaagtcaactttggatagtaacg Smik.....: caaatgggtggtgtaaccggcaatcttgtttctcaatctcttggattggatggtggcgatttcatcacaaagtctcttgttggtttggaaatccaaagtcaactttggatagtaacgttc Sbay.....: ---------------------------------------------------------------------------------------------------agtcaactttggatagtaacg 120~240: Spar.....: ttcaatcaaagccttagaagcacgcttgacggtcttggttctaactctaccctattaaaatgacggaaaaca-----ttacaaaataaaaaatttgta--aatgaatttttaacttgtta Smik.....: aatcaaagccttagaagcacgcttgacggtcttggttctaactctaccctattgagatgacaaaaaaca-----taacaaaacaaaacgtttgta--aatgaattttt-acttgttagta Sbay.....: ctcaatcaaagccttagaagcacgcttgacggtcttggttctaactctaccctgtttaaaagaggaaaatagaatgttcaccaaacaaaatgttggtaacaatgtattttttgtttgtta 240~360: Spar.....: gtatactgatatcgaaaacacgttatggtacgtgtagaggcagttcatgacgtcatattgtcccttgttcagcaaatacacaaagaaaatcca--gaagaaaccgaatttcctctaatac Smik.....: tactgttatcaaaagtatattgtagtttgcgtggaggcagtccgtaacgtcatattatcccttattcaatatatacaaaaagagctacca--caagttgctgttcttcctctaatacttc Sbay.....: gtataccgatataatagaagtaaattgtt--gtgtagaggctatgcatgacgtgatattgttctcctgccttgacatgtacaaagaagattcaataatggggctttgcttctttcgattc Spar_spli: DDDDDD 360~480: Spar.....: tgcaacaggtatttacctccaacttgttggaaaacccaccgcag--ccataacagccaaaacttgagcaccgtttcaattctatcactttttattgctatagtttcacatcgtgcggaaa Smik.....: aacaggttttcatctccagcttgttggaagcc----cactactaccgagtagccaaaatttgcaattcacttcagtcccatcatatttctggtgctatggtttcatgctgtcttccaatt Sbay.....: ccctacttgttgaaaagctcgccatataatggttcttggccctggtcgcttagaaatgtccctttcattctccttctttttaaagttttcttggtttattagctctgggctccccgtcgc 480~600: Spar.....: tttcgtcat------ttatgttctttcttttaactgttttgttg--gatgacttt------------attgggcatgtcgattcaatctatgtgtcctctcaaacctccaatattagctt Smik.....: tcg----------tcacgaattctggtttaaactcttctttg--cataacttt------------attacctatgtcgattcaatcaatattactgtccttgcaaaccctcatcttagct Sbay.....: tcttttggtgccatgttttgagatgtcttcgaattttataactactgttgacttttattttgaacaaatatgccacgtcaattcgatattt-cgtattttgataactcctacgcttactc Spar_spli: DDDDDD 600~720: Scer.....: ----------------tttgttattgctagtctcgagatcttgacttttcttagaattaagtcgattaatgcttgattaatacctaatttcatacatattac--gctaatatgccagtaa Spar.....: ataattaacataccattttgttattgctagtctcgagatcttgatttttctaagaattaagtcgattagtgctgaattaatctctaatttcatacacattac--gctaatatgccagtaa Smik.....: tatattaacataccattttgttattgctagtctcgagatcttggtatttgttagagttgaatcaaaaaacgctcgattagcgtttaatatcgtacataccgc--actaatatggcagcaa Sbay.....: tattttaacataccattttgttattgctagtctcgagatctttgtcttcttccgaatcgtactcattaacgcactaataatcacaaatttcatacatattacgtgctaatatggcagcga consensus: ************************** ** * ** * * * ** * ** *** ** **** * * ******** *** * Spar_spli: BBBBBBB Smik_spli: BBBBBBB 720~840: Scer.....: aagcgatcacgacgatagctacagcatgaaagattggcttaggaagcacca-ttccgttgcccacagcaag---ccggctgagcccag--gcgc--tgttgcacgt----acccaacaaa Spar.....: aagcgatcgcgacgatggctggggcatgaaagattggcttagaaaggaccg-ctctgtcatccacaacagg---ccggacgggcctaa--gcgc--tgttgcgcgt-----cccaacaaa Smik.....: aagcgatcgccacgatagcaagagcttgaaagattgtcctagaagga--cggccctgtcgtgtacaaccaacccccgaaggagcctaggcgtactgtgtcatacacaccaacagaacaga Sbay.....: aagtgatcacaacgatggtgagagcttggggaattagcctggaaagaaccacccccgttgcggataccaag----cgcatgagcctagacgcgc--tatctctcctcccaactaaacaaa consensus: *** **** * ***** * ** ** *** * * * * * * * ** * * * ** * *** * * * * * * * **** * 840~960: Scer.....: -cctcgtctctgccattggtctattgtcctcctggacaggccgcctcctgtggcaaagcagattcccaaacggg-gccaaaaaattaagtagaactcccagttttttggaaaataaaaaa Spar.....: -cttcggctgcgtcagtggtctttcgcccttctaatcaggccgcccgctacggcatgcctgtttaccaagctgg-gat-aaaaatcaaataaaactcct--tctctcgaaaaataagaaa Smik.....: ccttcaacggaacagatggtgtcgcgcccttctgggcaaaggacctaccatgaca----agtatattaagccaggccaaaaaaataaagtaaaactatt--tcctccgaaaaatagtttt Sbay.....: tcctcagccgggcctctaggctcgcgagctgctaagccaaacgcctgtggtggcggaacagttaccgaaacagattatgatgagagaaatgcccgtctgaaactaaataaaaaaaaaccc consensus: * ** * * * * * ** ** * ** * * * ** * * * ** * * **** * Spar_spli: DDDDDD 960~1080: Scer.....: ta-gaatgtacggatgtaatgcacggatgttaaaccggaaaaaaggt------tactgggtcaccctgggataccaagaatgagtctcaaaaagttcgaaatagaaaagtataatacaga Spar.....: tattaatgtacggatggaatgttcggatgttcag-cggaaaaaaagt------tgccgggtcacccgggcatgtcaagaaataatctc--aaagttcaaaatagaaagg---aatacatg Smik.....: atgaaatgtacggatgtaatgttcgggtgctgaaccaaaaaaaagtt-----tgttggggtaaccctgggattttaagaagtaattct--aatgttcacgacagaaagg---aatgaata Sbay.....: aaaaactgtacgggtggacggtacgggtgtacaacaggaagaaaaatacccacttccgggttactctatattttctagaaacaatttc--aatgttcaaagtagaaagaaagggaacgag consensus: * ******* ** * * *** ** * ** *** * **** ** * * **** * * ** **** ***** Spar_spli: DDDDDD 1080~1200: Scer.....: -ggttccattaataatgggggagatacattc---aaaggacgccaatgcgaataat-ctttcgttcaactagggtga-aataataataATGACGATAAAAAGAAATTTGGTGAAAGTACG Spar.....: -agttcggtttatggt-gggtctatacatttcggaaagaacactaatgcgacttat-tttttcattaactaggctga-cgtaataataatgacaatgaagagaaatttggtgaaagtacg Smik.....: -gatccgattcataat-aaaaacgcacactcc--acaggacactgatgcgac-----ttattaactagctgg------ctgaataataatgacgttgaagagaaatttggtgaaagtatg Sbay.....: tggtccgatctataat-agggctatagct-----atagattcctcaagagaccaatgctagttacgagctagttgggccaaaataacaatgactttaaaaagaaatctggtgaaagtatg consensus: * * * ** * * * ** * * * ** * * ** * ***** ****** * ** ****** *********** * Scer_spli: DDDDD Spar_spli: DDDDD Smik_spli: BBBBBBB DDDDD Sbay_spli: DDDDD known....: >==== 1200~1320: total....: ======= Scer.....: TATCAGAGGATCGTCCCTCGCTCTTTTTCCATTTGGTTGTCGATTTTCTG-AAGATGAATCCGTATACTAACATTACAACCATTTTATGCAATAGACTTTACAATCTATACGCTACCAAG Spar.....: tataagaagatcgcttttcgtttttctttcatttgcttgttgattttttgaaagatgaacccgtatactaacattgcaatcaatttacgcaatagactttgcaatctatacgctaccaag Smik.....: tatgagaaaatcatcttatgtttttctttcg-ttatctatcaattttctaaagggtgaacccatgtactaaccttatatcctatttgtgcaatagactttgcaatctatacgctaccaag Sbay.....: tacatgacaagc---cgtccttcattttccattttattg-----cttttgaacaatgaatccatatactaaccttgcatactacttttgttacaggctttacaatttacacgttaccaaa consensus: ** ** * * * * ** * ** * ** * * **** ** * ******* ** * * ** * * ** **** **** ** *** ****** Scer_spli: D BBBBBBB Spar_spli: D BBBBBBB Smik_spli: DDDDD BBBBBBB Sbay_spli: D BBBBBBB known....: =============================================================================================>= 1320~1440: Scer.....: CTACCACTGCCACCGCACATGCAGAATCCACGTTAAACCCTCTGCCAAACGCAGCCATTCCTCCCAAATACGCCTTAGTTACCGTTCGCTCCTTTCCATCATTAGAACCATTGACATTTG Spar.....: ctaccaatgccaccacacatgcagaaaccgtgttgaatcctctgccaaacgcagccattccacccaaatatgccttagttaccgttcgttcgtttccatctttagaaccattaacatttg Smik.....: caaccaatgcaaccgcacatgcagaaaccaagttaaatcctttgccaaacgctgccattcctcccaaatatgcattagtgactgttcgttcgtttccatctctagaaccgttaacatttg Sbay.....: ctacgaatgctaccgcacatgcaaaaaccataccgaatcctttgccaaatgcagcgattcctcccaaatacgcgttagtgactgttcgttcgtttccatcattagaaccgttgacgtttg consensus: * ** * *** *** ******** ** ** ** *** ******* ** ** ***** ******** ** ***** ** ***** ** ******** ******* ** ** **** Spar_spli: DDDDDDDDDD Smik_spli: DDDDDDDDDD Sbay_spli: DDDDDDDDDD 1440~1560: Scer.....: TGCCGGTCCCCACATCAACTGTAGCTGCTCCATTAAGGCGTGATATACTATGGAGAGCCGTAGTTTATGAAAACGATAATAGAAGAGTAGGCGCCTCAAATCCTCCCGGGAGAAGTGAAA Spar.....: tgccagtccccacatcaactgtagctgctccattaaggcgtgatatactatggaaagccgtcgtttatgaaaatgataatagaagggtaggtgcctcgaatcctcccggtagaagtgaaa Smik.....: tgccagtcccgacatcaactgtagctgctccactaaggcgtgatatactctggagggccgttgtttttgaaaatgataacagaagagtaggtgcttcaaatcctcccggtagaagtgaaa Sbay.....: tacccgtccccgcatcgactgtagctgctccattaaggcgtgatataatttggagagccgttgtttatgaaaacgataatagaagagtaggctcatcaaaccctcccggcagaagtgaaa consensus: * ** ***** **** *************** ************** * **** ***** **** ****** ***** ***** ***** * ** ** ******** ********** 1560~1680: Scer.....: ACGGGTTTTCCAGACGTAAATTGATGCCCCAAAAGGGTTCTGGTAGGGCAAGAGTCGGGGATGCTAACTCTCCAACAAGACATAATGGTGGTAGGGCATTGGCAAGAACTGCACCAAACG Spar.....: acgggttttctagacgaaaattgATGCCTCAAAAGGGCTCTGGTAGGGCAAGAGTCGGGGATGCTAACTCTCCAACAAGACATAATGGTGCTAGGGCATTGGCAAGAACTGCACCAAATG Smik.....: acgggttttctagacgtaaattgATGCCC........................................................................................... Sbay.....: acgggttctccagacgtaaattaATGCCTCAAAAGGGTTCTGGTAGAGCAAGAGTCGGGGATGCTAACTCTCCAACAAGACATAATGGTGCTAGGGCGCTCGCAAGAACTGCGCCAAACG consensus: ******* ** ***** ***** ***** ******** ******** ******************************************* ****** * *********** ***** * Scer_spli: BBBBBBB Spar_spli: BBBBBBB Sbay_spli: BBBBBBB 1680~1800: Scer.....: ACTATACTACAGAGCTACCATCCAAGGTTTATTCCATGGCTTTCAACAACGCTTTGAGCCACCAATATAAAAGTGGAAAGTTGTTTGTTATTGGTGGTGAAAAGGTCGACTTAATATCTC Spar.....: ACTATACTACAGAGCTACCATCCAAAGTTTATTCCATGGCTTTCAACAATGCTTTGAGCCACCAATATAAAAGCGGTAAGTTATTTGTTATTGGTGGTGATAAAGTCGACTTAATATCCC Sbay.....: ACTACACCACAGCATTGCCATCCAAAGTATATTCCATGGCTTTCAACAATGCTTTGAGCCACCAGTATAAAAGCGGTAAGCTGTTTGTTATAGGTGGTAATAAAGTTGACTTGATATCAC consensus: **** ** **** * ******** ** ******************** ************** ******** ** *** * ******** ****** * ** ** ***** ***** * Spar_spli: DDDDDD 1800~1920: Scer.....: CCACACCAGAACTCGACTTGAACAGGCTGGATCTTGTGAATACAAACACAGTTGAGGGCAAAGAGATTTTTGAGGGCGAAGTCATCTTCAGAAAATTCTTGGAGGAATTTCAACTTAAAG Spar.....: CTACATCAGGACTAGACTTGAACACGCTGGATCTTGTAAATACAAACACAGTTGAGGGCAAAGAGATATTTGAAGGCGAAGTCATCTTCAGAAAATTCTTGGAAGAATTTGAACTTGAAG Sbay.....: CCACCCCAGAAATAGATTTGAACGTGTTGGACATTTTAGAGACTGACAAACTTGAAGACAAGAAGAGTTTTGAAGAAGAAGCTATCTTCAGGAAGTTCCTGGAGGAGTTTCAACTAAAGG consensus: * ** *** * * ** ****** * **** ** * * ** *** * **** * *** *** ***** * **** ******** ** *** **** ** *** **** * * 1920~2040: Scer.....: GTAAGAGATTACTTTTCATTACAGACAAGACTAGGGAAGGGCTGATAAAGAGTTCTGATCCATACAAACAAAAAGTAGATGTTATACAGAAAGAACTTGTTGAGGTAAATGACATACTAA Spar.....: ATAAGAGATTACTTTTCATTACCGACAAGACTAGAGAGGGGCTGATAAAGAGTTCTGATTCATACAAACAAAAAGTAGATGTTATACAGAAAGAGCTTGTCGAGGTAAATGACATACTAA Sbay.....: GCAAGAAACTGCTTTTCATTACTGACAAGGCAAGAGAGGGGCTGATGAAAAGTTCCGACCCATTCAAACAAACAGTGGATGTTATACAGAAAGAGCTTGTTGAAGTCAATGACATACTGA consensus: **** * * *********** ****** * ** ** ******** ** ***** ** *** ******** *** ***************** ***** ** ** *********** * 2040~2160: Scer.....: GAGCCCAAGCTGTTTTTATCGAATTGGAAGCTCTTGAATATCTAGCAATGGCCCATCAGAAAGAA------ATCCTTCACTCCGTGT-CTAACTGAttttcatatgtacacatacaagtg Spar.....: GAGCACAAGCTGTCTTCATCGAATTGGAAGCTCTTGAGTACCTAGCAATGGCTCACCAGAAAGAA------ACTCTTTTCTCCGTCC-CAAACTGAttttcatatgtataaatacaagtg Smik.....: .....................................................aaatagagataa------tcttcacaacccgctt-caaactgattttcatacatataggtacaagtg Sbay.....: GAGCGCAAACCATCTTCATTGAACTGGAAGCTCTTGAATATTTAGCAATTGCACACCAAAAAGAATAAgagacatcgccgtccacctgaaaactcaattttgtacatatatatatatatt consensus: **** *** * * ** ** *** ************* ** ******* ** * * * * ** ** **** * *** ** ** * ** * * 2160~2280: Scer.....: accccttc-----ttctaccccatccagttattattccatctacatatttaaaaaataa--tctgtaaataat---aagcccatgaaat-atcaatctcacaatgaaagaat---tgtat Spar.....: cccctttc----agcttaccccatccagttactattccatttacatacgaaaaaataaa--tctgtaaataac---atgcccataagat-accaatcttactgtgtaagggt---tatac Smik.....: ccatcctt--ctagcttactccactcagtaattgttcaa-ctacatactaaaaaagaaa--tctgtaaataataaagcaatgaaaccttaatcatacttaatttgcaagttt---tatct Sbay.....: tccccatcttctagtttaccccgtccagttattattcca-ctacatataaaagaacacacttctgtaaataaccaaaaaatcatctcatgagcgagcttattgaaagagtatgcctctcc consensus: * * *** ** **** * * *** * ****** ** ** * *********** * * * * ** * ** * * * Sbay_spli: DDDDDD 2280~2400: Scer.....: a-attcagaatgatt-------------------tgacgtaaaa-----gcaagtctcattcaagaaactgtaaaatccgtaca-cactactgaattttacatccatacatttttttgaa Spar.....: a-attcgcaatggtt-------------------tgacgtaaaa------taaatcccattcaaaaa--tgtaaaatccgtaca-attcattgctcattacatccataca-ccttttgaa Smik.....: a-attttgaatagctgcggccataaatgtaattgtgacgtaaaaaaagatgggagctttttcacag--tcataacatctgtacattctgtatagatgttacacctatacatctttatag- Sbay.....: atgtttggcacggtc-------------------aagtttagaaggatagtgagtacggtttttgat-ttgttaaatccgtacagcgtccgtaaccataacacccatgcatgttcaaaat consensus: * ** * ** ** ** * * *** ***** * * *** * ** ** * Sbay_spli: DDDDDD DDDDDD 2400~2520: Scer.....: at-ttcatgtttttttgaaaa--attggaaa-agggctaaat-tatccgtcggggtgtcctcctagctcggctcaacctaggc--------aaatgcgtttactg-gggccatccaagct Spar.....: ag-tttatgttttttcaaact--attggaaatagggctaaat-tatccgtcgggatgt-ctcctagctcggctcaatctgagctgtccccacggtgcgcccactg-aggtctcccaagcc Smik.....: ---tttttaaaattttcaacg--gataaaagtgcgctgaaac-tactcaacgtgatgacctctc-gctcggcaccacacaatccctctcggctacactcctacggaaaaagggccgagcc Sbay.....: atatttgcgtttttttttatttcatcaaagctgccgcaaagcatttcaattgtcgtggtttccgggccgggctccgcctaaaatctcccactagtgagcctacgg-gaacggtgccctcc consensus: ** *** * * ** * * ** ** ** *** * ** * * * 2520~2640: Scer.....: catccttccagagattcgcctttcagaggcaaagaactcgtctccgcaggcctcttgttccgggaggaggagaa--ttcttgcgcggaaactggttgatgcctgggctatg-gtaattc- Spar.....: catcctttcagcggttgtccttgcacaggt-gaggcctcctctccgcaggcccctgttccaggaaggaggatgagtttccagcacggaaactggtcgatgcctagactatg-ctaattct Smik.....: cgttcttcaggagttttgtctctcacaggc-tagacgccccttccgc-atcttcacgctccagaaggaa--------ccccgcccggaaactggttgatgcctaggctgtgagcgaatct Sbay.....: cat-------gagctacctcttgcccagacgaaacctccctctctgt-gctctctagttctggaaggagaactc-ttctttcccccgcgaccagctaatgcctaggctaga-gcgattcc consensus: * * * * * ** * ** * * ** * * * * **** * * * ** * ****** * ** * ** 2640~2760: Scer.....: tgacacctttgcta-----tcctaactggaaaaggtccttagtaataacaatatcaggtactttaacattgttaaagatatactattagtgaaaaaccgatcttacgaaaagccaataga Spar.....: tgacacctttgtta-----tgccaactggaaaaggtccttagtaataacgatatcaggtacttaattattgttaaaaatat--tgttagtgaaaaaccgatcttacgaaaaatcgatata Smik.....: tggcacctttgctatgctgtgctaattggaagagatccttagtaataacaacatcacgtattttagtactactaa--ttag-ttatttgtgataatcagatcttacgaaaaatcgataaa Sbay.....: tggagctttggcta-----tactaactggaaaa-gtccttagtaataacaatatcaggtagtttaatactgttata-ttat--cattagtcttaaaccgatcctacgaaaaatacatata consensus: ** * ** * ** * * ** ***** * ************** * **** *** ** * * * ** ** ** ** ** * **** ******** *** * Smik_spli: BBBBBBBBB Sbay_spli: BBBBBBBBBBBB 2760~2880: Scer.....: gcagaaagtggtaaag-------------------------------------------------------------------------------------------------------- Spar.....: gcagaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattttacggtatgttttacgaatacaatac-agatacgttgagagagtttcacattaaatgg Smik.....: gcaaaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattttacggtatgttttacaagcacgatgg-agatttctcgagagagtttcaaactaaatag Sbay.....: gcaaaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattttacggtatgttttacaagtacaatacgataaatattgaaacaagatagttttaggcaa consensus: *** ************ Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 2880~3000: Spar.....: gataacagcttaatacagcgattggaaatacgtgagcgcactccgatggaataataaacttcaaggttgcgaaatacgaggccaaagtgacaccaagtttctctaaattatcaccaaatc Smik.....: aattgcagcccaacatagcaattgaagatacaggagcacattctaatgggacaataagggttaaggttgtaaaatgcaagaccaaagt-acatgacattaatatgaattatcaccaaaat Sbay.....: agaaag-----atgaaaaaagtccaaggcatgagtgcacagaataacgaatgaacagctgccaagataggtagtcacagggccagggcggcattgcgttaccataaatgatcaccgaact 3000~3120: Spar.....: ---------------taaagtaaaacgattttttggaaaatacaatctattgttcaatatgaattttgaaa----------attttttgataaaagcagcttgattgatatttatgacaa Smik.....: --------------ggaagcaaagaatgatttactggcaatatattccatcacttaatatgaactttacagtac-------tttaatgaacgcaactagacaaattagtgtccatggtac Sbay.....: agacgaaccgaacagtaaccgagaaatctaccttgaaaagtactagcccgtcctgaagacagatcccacaacgcgattatgcacttttactgagaggcgacccgttgaattgaccatgag 3120~3240: Spar.....: taccgtggcagtttgtac-gtggctcggaaatgatccatcgcattaaaatttctcgatcgaccttgcaacagtatgaaatactaactataagatgtaaaaatatttac---------aca Smik.....: tacctcagtagtttgt-tgatgtaggcaaattaatgaattgctttgaaatttctcggacgacctagtaccagtatgaaatactaacaataaggtataattttttttac---------act Sbay.....: tgttatttttgtgcccgtagctgaacagagacatttcactgaaaactagcttctccat-gtcctaacaatagcat-aaatactaacaataaaatgtaaaaaaattcttttttttacgacc Spar_spli: DDDDDDD DDDDDD BBBBBBB Smik_spli: DDDDDD BBBBBBB Sbay_spli: BBBBBBB 3240~3360: Spar.....: catttcaatt-agtttgttgaacaccaacgttgatggtaacattaaaattgtttacgctttgaccaccattaagggtgttggtcgtcgttactccaacttggtctgtaagaaggctgatg Smik.....: cattttaatc-agtttgttgaacaccaacgttgatggtaacattaaaattgtttacgctttgaccaccatcaagggtgtgggtcgtcgttactccaacttggtctgtaagaaggctgatg Sbay.....: ctttttaattcagtttgttgaacaccaacgtcgatggtaacattaaaattgtttacgctttgaccaccattaagggtgttggtcgtcgttactccaacttggtttgtaagaaggccgatg 3360~3422: Spar.....: ttgatttacacaagagagctggtgaattgacccaagaagaattggaaagaattgttcaaatt Smik.....: ttgatttacacaagagagctggtgaattgacccaagaagaattggaaagaattgttcaaatc Sbay.....: ttgatttgcaaaagagagctggtgaattgacccaagaagaattggaaagaattgtccaaatc { alias......: ['RPS18B'] chromosome.: 13 description: Ribosomal protein S18B end........: 223828 exons......: [(1, 47), (449, 842)] gene.......: RPS18B introns....: [(48, 448)] length.....: 842 name.......: YML026C plength....: 280 start......: 222987 tdist......: 222987 type.......: ORF up.........: 0 } Scer: 4 donors and 2 branches Spar: 4 donors and 1 branches Smik: 2 donors and 2 branches Sbay: 5 donors and 2 branches INTRON SPLICING FOUND!! [ ->[('Scer', 724), ('Spar', 724), ('Smik', 724), ('Sbay', 724)] ->[('Scer', 1935), ('Spar', 1931), ('Sbay', 1930)] ->[('Scer', 1022), ('Spar', 1031)] ->[('Spar', 1091), ('Smik', 1091)] ->[('Sbay', 166)] ->[('Sbay', 227)] ->[('Sbay', 285)] ->[('Scer', 809)] ] [ ->[('Scer', 1104), ('Spar', 1099), ('Smik', 1099), ('Sbay', 1098)] ->[('Sbay', 552)] ->[('Scer', 863)] ->[('Smik', 607)] ] 0~120: Scer.....: ------------------------------------ttttcatatgtacacatacaagtgacc--ccttc-ttctaccccatccagttattattccatctacatatttaaaaaataa--t Spar.....: ------------------------------------ttttcatatgtataaatacaagtgccc--ctttcagcttaccccatccagttactattccatttacatacgaaaaaataaa--t Smik.....: aaatagagataatcttcacaacccgcttcaaactgattttcatacatataggtacaagtgccatccttctagcttactccactcagtaattgttcaa-ctacatactaaaaaagaaa--t Sbay.....: ------gagacatcgccgtccacctgaaaactcaattttgtacatatatatatatatttccccatcttctagtttaccccgtccagttattattcca-ctacatataaaagaacacactt consensus: *** * * ** * ** * * * * * *** ** **** * * *** * ****** ** ** * * 120~240: Scer.....: ctgtaaataat---aagcccatgaaat-atcaatctcacaatgaaagaat---tgtata-attcagaatgatt-------------------tgacgtaaaa-----gcaagtctcattc Spar.....: ctgtaaataac---atgcccataagat-accaatcttactgtgtaagggt---tataca-attcgcaatggtt-------------------tgacgtaaaa------taaatcccattc Smik.....: ctgtaaataataaagcaatgaaaccttaatcatacttaatttgcaagttt---tatcta-attttgaatagctgcggccataaatgtaattgtgacgtaaaaaaagatgggagctttttc Sbay.....: ctgtaaataaccaaaaaatcatctcatgagcgagcttattgaaagagtatgcctctccatgtttggcacggtc-------------------aagtttagaaggatagtgagtacggttt consensus: ********** * * * * ** * ** * * * * ** * ** ** ** Sbay_spli: DDDDDD DDDDDD 240~360: Scer.....: aagaaactgtaaaatccgtaca-cactactgaattttacatccatacatttttttgaaat-ttcatgtttttttgaaaa--attggaaa-agggctaaat-tatccgtcggggtgtcctc Spar.....: aaaaa--tgtaaaatccgtaca-attcattgctcattacatccataca-ccttttgaaag-tttatgttttttcaaact--attggaaatagggctaaat-tatccgtcgggatgt-ctc Smik.....: acag--tcataacatctgtacattctgtatagatgttacacctatacatctttatag----tttttaaaattttcaacg--gataaaagtgcgctgaaac-tactcaacgtgatgacctc Sbay.....: ttgat-ttgttaaatccgtacagcgtccgtaaccataacacccatgcatgttcaaaatatatttgcgtttttttttatttcatcaaagctgccgcaaagcatttcaattgtcgtggtttc consensus: * * *** ***** * * *** * ** ** * ** *** * * ** * * ** ** Sbay_spli: DDDDDD 360~480: Scer.....: ctagctcggctcaacctaggc--------aaatgcgtttactg-gggccatccaagctcatccttccagagattcgcctttcagaggcaaagaactcgtctccgcaggcctcttgttccg Spar.....: ctagctcggctcaatctgagctgtccccacggtgcgcccactg-aggtctcccaagcccatcctttcagcggttgtccttgcacaggt-gaggcctcctctccgcaggcccctgttccag Smik.....: tc-gctcggcaccacacaatccctctcggctacactcctacggaaaaagggccgagcccgttcttcaggagttttgtctctcacaggc-tagacgccccttccgc-atcttcacgctcca Sbay.....: cgggccgggctccgcctaaaatctcccactagtgagcctacgg-gaacggtgccctcccat-------gagctacctcttgcccagacgaaacctccctctctgt-gctctctagttctg consensus: ** *** * ** * * * * * * * * ** * ** * * ** * * * 480~600: Scer.....: ggaggaggagaa--ttcttgcgcggaaactggttgatgcctgggctatg-gtaattc-tgacacctttgcta-----tcctaactggaaaaggtccttagtaataacaatatcaggtact Spar.....: gaaggaggatgagtttccagcacggaaactggtcgatgcctagactatg-ctaattcttgacacctttgtta-----tgccaactggaaaaggtccttagtaataacgatatcaggtact Smik.....: gaaggaa--------ccccgcccggaaactggttgatgcctaggctgtgagcgaatcttggcacctttgctatgctgtgctaattggaagagatccttagtaataacaacatcacgtatt Sbay.....: gaaggagaactc-ttctttcccccgcgaccagctaatgcctaggctaga-gcgattcctggagctttggcta-----tactaactggaaaa-gtccttagtaataacaatatcaggtagt consensus: * **** * * * ** * ****** * ** * ** ** * ** * ** * * ** ***** * ************** * **** *** * Sbay_spli: BBBBBBBBBBBB 600~720: Scer.....: ttaacattgttaaagatatactattagtgaaaaaccgatcttacgaaaagccaatagagcagaaagtggtaaagATG---TCTTTAGTTGTACAAGAACAAGGTTCCTTCCAACACATTT Spar.....: taattattgttaaaaatat--tgttagtgaaaaaccgatcttacgaaaaatcgatatagcagaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattt Smik.....: ttagtactactaa--ttag-ttatttgtgataatcagatcttacgaaaaatcgataaagcaaaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattt Sbay.....: ttaatactgttata-ttat--cattagtcttaaaccgatcctacgaaaaatacatatagcaaaaagtggtaaagatgtcttctttagttgttcaagaacaaggttccttccaacacattt consensus: * * * * ** ** ** ** ** * **** ******** *** **** *************** *********** **************************** Smik_spli: BBBBBBBBB 720~840: total....: ====== Scer.....: TACGGTATGTTTTACGAGTACAGTGC-AGATATGTTGAGAGAGTTTCACATTACATGGGATAATAGCTTAATATTGCGATTGAAAATATGTGAGTGCACTCCGATGGAATAATAAACGTC Spar.....: tacggtatgttttacgaatacaatac-agatacgttgagagagtttcacattaaatgggataacagcttaatacagcgattggaaatacgtgagcgcactccgatggaataataaacttc Smik.....: tacggtatgttttacaagcacgatgg-agatttctcgagagagtttcaaactaaatagaattgcagcccaacatagcaattgaagatacaggagcacattctaatgggacaataagggtt Sbay.....: tacggtatgttttacaagtacaatacgataaatattgaaacaagatagttttag--gcaaagaaagatgaaaaaag---tccaaggcatgagtgcacagaataacgaatgaacagctgcc consensus: *************** * ** * * * * ** * * * ** * ** ** * * * * * * * ** * * ** * Scer_spli: DDDDDD DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD known....: >=================================================================================================================== 840~960: Scer.....: ACGGGTTACCAAATACGAGGCCGAATTAACTCTACGCTACTATAAAAATTATCACTAGATTTTA------AAGTAATACACAG------TTTATTGGAAAATACAATATATGACTCAATG Spar.....: a-aggttgcgaaatacgaggccaaagtgacaccaagtttctct--aaattatcaccaaa-tcta------aagta--aaacga------ttttttggaaaatacaatctattgttcaata Smik.....: a-aggttgtaaaatgcaagaccaaagt-acatgacattaatat--gaattatcaccaaaatgg-------aagcaaagaatga------tttactggcaa-tatattccatcacttaata Sbay.....: a-agataggtagtcacagggccagggcggcattgcgttaccat--aaatgatcaccgaactagacgaaccgaacagtaaccgagaaatctaccttgaaaagtactagcccgtcctgaaga consensus: * * * * * * ** * * * *** ***** * * * * * ** ** ** * ** Scer_spli: BBBBBBB known....: ======================================================================================================================== 960~1080: Scer.....: CGAATTTAAAAA---TTTCAGTCAATACAGCTTGACAAATTCATATT-TATCGTCCCTCCATG-----TTCGTACGCCATTCCAAAATGATGCGCCATGTTGAAAATT---TCTCGAAGA Spar.....: tgaattttgaaaattttttgataaaagcagcttgattgatatttatg-acaataccgtggcag-----tttgtacgtggctcggaaatgatccatcgcatt-aaaatt---tctcgatcg Smik.....: tgaactttacag-tactttaatgaacgcaactagacaaattagtgtccatggtactacctcagtag--tttgttgatgtaggcaaattaatgaattgctttgaaatt----tctcggacg Sbay.....: cagatcccacaacgcgattatgcacttttactgagaggcgacccgttgaattgaccatgagtgttatttttgtgcccgtagctgaacagagacatttcactgaaaactagcttctccatg consensus: * * * * ** * * * ** ** ** * * *** * Scer_spli: DDDDDDDDDDD Spar_spli: DDDDDD known....: ======================================================================================================================== 1080~1200: total....: ======= Scer.....: ACCTAGCAGTGGTGTGAAATAAATTACTAACAATAAGATGTACAA------TTTTTTGTGCG-CCCATTACAA-TCAGTTTGTTGAACACCAATGTCGATGGTAACATTAAAATTGTTTA Spar.....: accttgcaacagtatgaaa-----tactaactataagatgtaaaa------atatt--taca-cacatttcaa-ttagtttgttgaacaccaacgttgatggtaacattaaaattgttta Smik.....: acctagtaccagtatgaaa-----tactaacaataaggtataa--------ttttttttaca-ctcattttaa-tcagtttgttgaacaccaacgttgatggtaacattaaaattgttta Sbay.....: tcctaacaatagcataaa------tactaacaataaaatgtaaaaaaattcttttttttacgaccctttttaattcagtttgttgaacaccaacgtcgatggtaacattaaaattgttta consensus: *** * * * ** ******* **** * ** * ** * * * * ** ** * ***************** ** *********************** Scer_spli: BBBBBBB Spar_spli: DDDDDD BBBBBBBBBBBB Smik_spli: DDDDDD BBBBBBBBBBBB Sbay_spli: BBBBBBBBBBBBB known....: ============================================================================>= 1200~1320: Scer.....: CGCTTTGACCACTATTAAGGGTGTTGGTCGTCGTTACTCCAACTTGGTCTGTAAGAAGGCTGATGTTGATTTGCACAAGAGAGCTGGTGAATTGACCCAAGAAGAATTGGAAAGAATTGT Spar.....: cgctttgaccaccattaagggtgttggtcgtcgttactccaacttggtctgtaagaaggctgatgttgatttacacaagagagctggtgaattgacccaagaagaattggaaagaattgt Smik.....: cgctttgaccaccatcaagggtgtgggtcgtcgttactccaacttggtctgtaagaaggctgatgttgatttacacaagagagctggtgaattgacccaagaagaattggaaagaattgt Sbay.....: cgctttgaccaccattaagggtgttggtcgtcgttactccaacttggtttgtaagaaggccgatgttgatttgcaaaagagagctggtgaattgacccaagaagaattggaaagaattgt consensus: ************ ** ******** *********************** *********** *********** ** ******************************************** 1320~1440: Scer.....: CCAAATCATGCAAAACCCAACTCATTACAAGATCCCAGCCTGGTTCTTAAACCGTCAAAACGACATTACTGATGGTAAGGACTACCACACTTTGGCTAACAACGTCGAATCCAAGTTGAG Spar.....: tcaaattATGCAAAACCCAACTCATTACAAGATCCCAGCCTGGTTCTTGAACCGTCAAAACGACATCACTGATGGTAAGGACTACCACACCTTGGCTAACAATGTCGAATCCAAATTGAG Smik.....: tcaaatcATGCAAAATCCAACTCATTACAAGATTCCAGCTTGGTTTTTGAACCGTCAAAACGACATTACTGACGGTAAGGACTACCACACTTTGGCTAACAATGTCGAATCCAAGTTGAG Sbay.....: ccaaatcATGCAAAACCCAACCCATTACAAGATCCCAGCTTGGTTCTTGAACCGTCAAAACGACATCACCGATGGTAAGGACTACCACACTTTGGCTAACAACGTCGAATCTAAATTGAG consensus: ***** ******** ***** *********** ***** ***** ** ***************** ** ** ***************** *********** ******** ** ***** 1440~1560: Scer.....: AGATGACTTGGAAAGATTAAAGAAGATCAGAGCCCACCGTGGTATTAGACACTTCTGGGGTTTACGTGTTAGAGGTCAACACACCAAGACCACTGGTAGAAGAAGAGCTTAAatcaatta Spar.....: AGATGACTTGGAAAGATTAAAGAAGATCAGAGCTCACCGTGGTATTAGACACTTCTGGGGCTTACGTGTTAGAGGTCAACACACCAAGACCACTGGTAGAAGAAGAGTTTGAattaatta Smik.....: AGATGACTTGGAAAGATTAAAGAAGATCAGAGCTCACCGTGGTATTAGACACTTCTGGGGTTTACGTGTTAGAGGTCAACACACCAAAACCACCGGTAGAAGAAGAGTTTAAattaaagg Sbay.....: AGATGACTTGGAAAGATTAAAGAAGATCAGAGCTCACCGTGGTATCAGACATTTCTGGGGTTTACGTGTTAGAGGTCAACATACCAAGACCACCGGTAGAAGAAGAGTTTAAattaatta consensus: ********************************* *********** ***** ******** ******************** ***** ***** ************* ** *** ** 1560~1680: Scer.....: aggaaattatcagtaataattgtacgctattttcgttt--ttattatctttattttcttttttt---attcttcaaaggagaaagtactacacgtgttttcagaccaatgtgtgtttaat Spar.....: aggaaattgtcaataataattgtacgctattctcgttttgttattatctttattttctttttttttaattcttcaaagaagaaagcaatatacgtgctttctgaccaatgtgtgtttaat Smik.....: agg..........................................atctttattttctttttttaatttttccaaacaaataatcaaatatacgtgttttcagaccaatgtgtgtttaat Sbay.....: agggaaatacggataataataatacgttaattt-gctttgttattat-tttgtcttctttttttt--agttttttaaaaataataaaatatacgtgttttcaaaccaatgtgtgtttaat consensus: *** ** * ******* **** ** * * * ** ******* *** * ********** * * * ** * ** ***** **** ***************** 1680~1800: Scer.....: caactttttattc--tatgtataacatataagcaaaaaaagatataatataattaagttttatacggtaaacatcgttaacatcactcaaccggggtg-a---gaaagtaccatcgatgg Spar.....: caactttttattc--tatgtataacatataagcaaaaaaagatataatataattaagttttatacggtaaacaacgttaacatcgctcaaccagggtgaa---aaaagtactgccggtgg Smik.....: caactttttattctatatatataacatataagcaaagaaaggtataatataattaagttttatacggcagataacgtttacatcactcatccaggatgga---tgaggcgctgtggctga Sbay.....: caactttttattc--tatgtataacatataagcaaaaaaagatataatataattaagttttattcggtaaaaaaaacaacaacaaaccaaccaagcggcaatcaaatcgacgacagctgt consensus: ************* *** ***************** **** ********************* *** * * * * ** ** * * * * * * ** 1800~1920: Scer.....: aactgcacttt--attttgactacatgtaaagttaaaagaggtgttatagaag--tcttttaaaaaacgtaaggtaattagaaaacaattgtata-ttttatgatatatgctaggactga Spar.....: aactgtgcttt--attatgacaacatttaaaattaaaaggtg------------------------------ggtaattagaaaacaactgtata-ttttatg-ta-atgctagaactga Smik.....: agatgtgcttt--aatgtaaccatatctggtattaggagaacaaatatgagagaatttctcaagaatgaggtaataatcaaaatacaattgtata-ctttatataacatgctagaactga Sbay.....: agctggaatatcgcttataaaaccgtgttcagcctaatctactaccaaggatt--ttttttagaaaa----agataattaaaacaactatgtatagtcctatataacatgcgagaattaa consensus: * ** * * * * * * * **** * ** * ****** *** * **** ** * * * 1920~2012: Scer.....: agtgaacaatgatatgtatg--------------aatgccgtatag-ggaaatgaat----ttgcgaataaataat--gactagagattaga Spar.....: agtgaacaatggtatgaatgaaaatttaaaaaaaaatgccgtatggaggaaatgaatggagaggagaataaataat--tacgagaggttaaa Smik.....: agtgaa-aatgatatgaatgataa-------aaaaatgccgtattaaggataag-------ttgagaatggagat---catgagggggccaa Sbay.....: agtgtgaggcg-tatgaatg------------aaagtgcc-tactgaggaaatgaa-----gtggaaataaataatcatatgagcggtcaaa consensus: **** * **** *** * **** ** *** * * * *** * * * ** * * Scer_spli: DDDDDDDDDDDDDDDDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDDD { alias......: ['SRC1', 'YML033W'] chromosome.: 13 description: Spliced mRNA and Cell cycle regulated gene end........: 212155 exons......: [(1, 1920), (2047, 2631)] gene.......: SRC1 introns....: [(1921, 2046)] length.....: 2631 name.......: YML034W plength....: 877 start......: 209525 tdist......: 209525 type.......: ORF up.........: 1 } Scer: 4 donors and 1 branches Spar: 5 donors and 2 branches Smik: 9 donors and 3 branches Sbay: 7 donors and 5 branches INTRON SPLICING FOUND!! [ ->[('Scer', 1100), ('Spar', 1100), ('Smik', 1100), ('Sbay', 1100)] ->[('Scer', 2610), ('Spar', 2610), ('Smik', 2610), ('Sbay', 2610)] ->[('Scer', 2744), ('Spar', 2744), ('Smik', 2744), ('Sbay', 2744)] ->[('Scer', 1683), ('Spar', 1683), ('Sbay', 1683)] ->[('Smik', 3534), ('Sbay', 3538)] ->[('Sbay', 510)] ->[('Sbay', 3032)] ->[('Smik', 225)] ->[('Smik', 272)] ->[('Smik', 2310)] ->[('Smik', 3596)] ->[('Smik', 3697)] ->[('Spar', 2208)] ] [ ->[('Scer', 2848), ('Spar', 2848), ('Smik', 2848), ('Sbay', 2848)] ->[('Spar', 3098), ('Sbay', 3098)] ->[('Sbay', 345)] ->[('Sbay', 1273)] ->[('Sbay', 1879)] ->[('Smik', 3560)] ->[('Smik', 3710)] ] 0~120: Scer.....: ------------------------------------------------------------------------aattt-tttttagaatgcccccttttt-atttgttatata-atttatt Spar.....: ----------------------------------------------------------------------agtactt-ttttgagaatacccctttttttattttttatatatattaatt Smik.....: -----------------------------------------------------------------agtatattattc-ctgcgagaatgctcccttttt---------tatgtttatacc Sbay.....: ccagctcgtcgtgtgagggagcgggctccagcgataagtcgttgagcttttgtgtagcttgattatccatactatgggttttgtgaatgctcccttttt---ttaatatatatgtatttc consensus: * * **** * ** ***** *** * 120~240: Scer.....: aatctggcgtactagcagttcaatcgagttttgctgaatcaaaa-ttggctatagcagggagac--tataataaaaatactattaatatccgataattgactagtatacgagaa--acgc Spar.....: aatctggcgttttacctgtccaatcgagttttgctaaatcaaaaaccgggtatagcagggagac--tataataaat-tactattattattcgaaaattaagtggtgtacgataacaactg Smik.....: agtctaacgtactagctatccaattgagcttttccaaatcaaaaacaggtta--acaggaaaaa--taaaataaat-tcctcttaatattcgaagattgattaatgtatgtcaactattg Sbay.....: aatatggtgtgttacctcttcaattgaactttgttaggtcaaaaaacgggcgt-gtaggggggcggttcaatatat-tactgttctagtacaataattgatcagtgtattagaatccttc consensus: * * * ** ** * * **** ** *** ****** ** *** * **** * * ** ** * * * *** * * ** ** Smik_spli: DDDDDD 240~360: Scer.....: tgctaattctgcctgtagagagagagaagaaaagtcgtcaagagatgccttttttttttttttaaaatttatctattttttgataatatcctttaaaccttgtgctactagaactccttt Spar.....: tgttgattccaccttaagagaaag-gagaaaaatacgtctacatgttcatttttttttt-----aattttttctattttatgaatatatcctttaaatcttgtgctactagtactccttt Smik.....: tattggttttacgggcggagaaag--gagaaagttcgttaacatgagcattttttg--------gatttttttagttatatgcatatatcctttaaatctagtgctgctagtactccttt Sbay.....: tttgaatactccaagcgaaggaaa-------aacgtgtccacatgtgcattttttt--------------aattgatttatggatatatcctttaaatcttagactactaacctctcctt consensus: * * * ** * * ** * * * ****** * * ** ************ ** ** *** * ** Smik_spli: DDDDDD Sbay_spli: BBBBBBB 360~480: Scer.....: ctcatcatcgccaggcgcaaaaaaaagatgaaaaaggaatgaaaaaa-gaaaagagaagacccccacgtgccctaaa-aataaagttagggcatctataaaataactaggatatatatat Spar.....: ---gtcatcgccaggcgcaaaaaaagaagaaaaaaggaatgaaaaaa-gaaaagagaagacccc-acgtgccctaaa-attat-gttagggcattgataattatattaggttatata--t Smik.....: c---tcatcgccaggcgca---------taaaaaaggaaagaaaaa--gaaaagagaacacact--aaaaccctaaa-actaattttagggcgtatcaacttatgttaggactttaa--t Sbay.....: cc--tcatcgccaggcgcaaaaaaag--aaaaaaagtaacgaaaaaaagaaaagagaagaccta--gaagccctagataaaaatattagggcaaaagataaaaggttagggcattta--t consensus: *************** ****** ** ****** ********** ** ***** * * * ******* **** * * * 480~600: Scer.....: tgatcaccctgaacggaaatcaagggttttaaagagccctcaaaattactgttttaggaagccccctttgtttttgttttggtttcaatttgtggtg--g-ctaatctggacatcgatct Spar.....: tgatcaccctgaacggaaatccagggttt-atacagacttcaggattacccttttaggaagccccctttgtttttgttttggtttcaatttgtggtg--ggctaatctggacatcgatct Smik.....: tgatcaccctaaatggagatctagggttt-aaatagtatttacgattacccttttgggaaaccccctttgtttttgtttttgtttcaatttgtggtg--ggttaatctggacatcgatct Sbay.....: tgatcaccctgaatggaaatctaggtctttgtat-gtgttatgaattacccttttaggaagccccctttgtttttgttttggtttcaatttgtgttgttgggtcagctggacatcgatct consensus: ********** ** *** *** *** ** * * * ***** **** **** ******************* ************* ** * * * ************** Sbay_spli: DDDDDDD 600~720: Scer.....: acttg-tatagctgtcaatatactatgcggaa-tacatggaagagaaatagtcctcagtcattattaatagtagactgagacc-atacggagtgaa-cgtagaggccagaacaa----ca Spar.....: acttg-tatagctgtcaagatgctatacggaa-tacatg-aagagaaatggtcctcatccataactattagtaaagtgagg---gtatagtgtgaa-cgtggagactataatag----ca Smik.....: acttg-taaagctgtcaatatgctatgtagaaataaattaaagagaagtggtcgtcagaagtatctattagtaaagtaaaacc-tcatagtgtgaa-cgtggag-ccataatag----ag Sbay.....: acttggtagaactgttaaaaggttacgaagaa-gagatataatagaagcagtccataacaac----atcaaaagattgaggcttgtacagtgcaaaacgtgaaagccagaacaggatata consensus: ***** ** * **** ** * ** *** * ** ** **** *** * * * * * * * * * * ** *** * * * ** * 720~840: Scer.....: aacagtagaac-ggtagcagtactcagttagtgccgcgATGAATAGTGACTTGGAGTATTTAGAGGACGGTTTTGATCCGAATTCAATGAAAGTTGCGACTTTGAGGAGGATATTGGTAG Spar.....: aacaatagaac-ggtagcagtacacagttagtgccgcgATGAACAGTGACTTAGAGTATTTGGAGGACGGATTCGATCCGAATTCAATGAAAGTTGCGACTTTGCGGAGGATATTGGTGG Smik.....: tacaatataattagtagcagtacacagttagtgccgcgATGAACAGTGACTTAGAATATTTAGAGGACGGATTTGATCCGAATTCAATGAAAGTTGCTACGTTAAGGAGGATATTAGTGG Sbay.....: tacaacagaac-catagcagtacgcagtgagcgccgcgATGGACAATGATTTGGAGTATCTAAAAGCCGGGTTCGATCCGAATTCCGTGAAAGTGGCTGCCCTGAGGAGGATATTGGTGG consensus: *** * ** ********* **** ** ********* * * *** ** ** *** * * * *** ** *********** ******* ** * * ********** ** * 840~960: Scer.....: AAAATAATGTCGATTTCCCATCTAATGCTAGGAAAAATGCGCTGGTGGGGCTGTTCGATGAAAAGGTTAAACCGCAGATCCCGCAGTTACGGAAAATGTATCTGAACGTTCGGCCCAGCG Spar.....: AGAATAATGTCGATTTCCCATCTAATGCTAGAAAAAACGCACTAGTGGGGTTGTTCGATGAAAAGGTTAAACCGCAGATTCCGCAGTTACGGAAAATGTATTTGAACGTCAAGCCCAGCG Smik.....: AGAATAACGTCGAGTTCCCATCCAATGCAAGAAAAAACGCACTAGTAGGGTTGTTTGACGAGAGGGTTAAACCTCAGATCCCGCAATTACGGAAAATGTATTTAAACGTCCAACCCAGTG Sbay.....: AGAACAACGTAGAGTTCCCTTCAAATGCCAGGAAGAACGCTCTCGTGGGACTGTTTGAGGAGAAGATTAAACCGCAGGTGAAGGAGTTGCGGAAAATGTATCTGAACGTTCAGCCGAGCG consensus: * ** ** ** ** ***** ** ***** ** ** ** ** ** ** ** **** ** ** * * ******* *** * * * ** ************ * ***** ** ** * 960~1080: Scer.....: ATGAAGGTATTGTGAAAATGGACCGTCCCTCATCTTCCCCATCTATAGCTTCCCCT---CGTAGAAGTAGACGAGCTCGCAGGGAGAAATCTGCTTCCCCCATGGCCAAACAGTTTAAGA Spar.....: ACGAAGGTATCGTGAGAATGGACCGTCCTTCATCTTCCCCATCTGTAGCTTCCCCT---CGTGGGAATAGACGAGCTCGCAGAGGGAAATCTGCTTCTCCCCTGGCCAAACAGTTCAAGA Smik.....: ACGAAGGTATTGTGAAGGTTGACCGTCCTGCCTCTTCTTCCTCTATATCTTCCTCT---CGTAGGAATAGACGGGCTGGCAGAGAGAAATCCGCCTCTCCCTTGGCCAAACAGTTTAAGA Sbay.....: ACGAGGGTATTGTGAAGATGGACCATCCTTCTTCTTCCTCGTCTTCAGCTTCTTCTTCTCGCAGGAGTAGACGGTCCCGTGGGGAGAGATCAGCTTCTCCTCTGGCTAAACAGTTTAGAA consensus: * ** ***** **** * **** *** * ***** * *** * **** ** ** * * ****** * * * * ** *** ** ** ** **** ******** * * 1080~1200: total....: ====== Scer.....: AGAATAGAATACTGGATGATGTAAGTAATGATGATGATGATGATGATGATGATGATG---------------ATGACAATGATAAAAAAGACGATC-CTTTAATTGTACCTAGTGGAACG Spar.....: AAAATAGAATACTGGACGATGTAAGTAATGATGATGATGA---------------------------------------------GAGAGACGATC-CTTTAATCATACGTAGTGGAACG Smik.....: AAAATAAAATACTGGATGATGTAAGTAATGATGATGATGATGATGATGA------------------------------------GGGAGACGATC-CTTTGATCATACTTAGTGGCACA Sbay.....: AAAACAAAATATTGGACGATGTCAGTGATGATGATAATGATGACGAGGTGGATAATATTTTGATCGTATCTAGTGAATCCAACGAGGGAAACGAGGACAACGAGGACAACGAGGACAACG consensus: * ** * **** **** ***** *** ******** **** * **** * * * ** ** Scer_spli: DDDDDD Spar_spli: DDDDDD Smik_spli: DDDDDD Sbay_spli: DDDDDD 1200~1320: Scer.....: --GATACCGATGAAGTGGA---------CGATGAAGAGGATGATGTGATAACATCAAGCTCCAACAAATCAGACACCAATGATTTCCAGCAAAATTCCGATACTCGTAAGAAAAGGAAAG Spar.....: --GAGGGCGAGGA---GGA---------CGATGATCAGGACGATGCAATGACATCAGGCTCCAACAAATCAGACACCAACGATTTCCAGCAGAATTCTGATGCTCGTAAGAAAAGGAAAG Smik.....: --GAGGGCGAGGAAGGGGA---------CGGAGGTGAGAATGA---GTTGACAACCAGCTCCTACAAATCTGATACCAACGATTTTCAACTGAATTCCAATACTCGTAACAAGAGGAAAG Sbay.....: AGGAGGAGGAGGAGGAGGATAACGACGACGACGATGAAGATGACGTGTCCATAGCCAGCTCTAATAAGTCAGACACTAACGATTTTCAACAAAATTCCGTCGCAAACAGGAAAAG-AAAG consensus: ** ** ** *** ** * * * ** * * * **** * ** ** ** ** ** ***** ** * ***** * * ** ** **** Sbay_spli: BBBBBBB 1320~1440: Scer.....: ACCCTGATTCTGACGACTGGTCTGAATCTAATTCAAAGGAAAATAAAATCGATAATA---------AGCATTTGAACCTCCTATCATCAGATTCAGAAATTGAACAGGATTACCAGAAGG Spar.....: GCCCGGATTCCGACGATGGCCCCGAATCTAATTCAAAGGAAAATAAAGTTGATAATATCACCAATGAACATTTCAATATCTCATCTTCAGATTCAGAAATTGAACAAGATTATCAGAAAG Smik.....: GTCCTGATTCCGACCATGATTCTGAGGTAAGCTCAAAGGAAAATAAGAGGGTTG------------AGCCCTTCAATATTCAATCTTCAGATTCAGAAATGGAAAAGGATTACCAGATGA Sbay.....: GGCCTGGTTCTGATATTAGTTCTGAAGCTAGCTCAAAGGAAAATAGGAACAACGACGAAAGTAAAGGGGCCTTCGACATCTCATCGTCTGATTCGGAGGTAGGAAAAGATTACCGAAAAG consensus: ** * *** ** * ** * ************* ** * * *** ** ***** ** * * * * ***** * * 1440~1560: Scer.....: CAAAAAAGCGTAAGACGAGTGATTTGAACC---AAGAGCATGGAAATGGCTCTGCCATTTTAGGAAAACTTTCCGTCAAAACACCAATAAAGAACACAAATAGAAAGCCAGTAAGCATGG Spar.....: CAAAGAAACGTAAGACAGGTAGTTTGAATC---AAGAACATGGAAACGGCTCCGCCATTTTGGGGAAACTTTCTGTCAAGACACCAATAAAGAACACAAATAAGAAGCCAGTAAACATGG Smik.....: CTAAAAAACGTAAGGTAAATCGTTTGGATCCTCAAAAGCACGAAAACGGTTCCGCTATTTTAGGCAAACTTTCTGTCAAGACACCGATGAAGAAGATCGGTAGGAAACCAGTAAGCATTG Sbay.....: CAAAGAAACGTAAGACAGATCGTTTGAGCCCTCAAGAGCATGGAAGTCGTTCGGCCATTCTGGAAAGGATTTCTGACAAGACACCAATAAAGAACGCAAATAGAAAAGCAGTAAGCATGG consensus: * ** ** ****** * **** * ** * ** * ** * ** ** *** * * * **** * *** ***** ** ***** ** ** ****** *** * 1560~1680: Scer.....: ATAATTTTAACGATTCGTTGACTTCAAGCGGTACGGAAAATGATCCATTTGTACCGAACATACGACACAATCCAAAAGAGCTCGGAACTGCCAATGGAACAGG---CCATAGCACACCCT Spar.....: ATCATTTTAACGATTCGATGACTTCTAGTGGTACGGAAAATGATCTGTTTGTACCGAACATACGGCACAATCCAAAAGAGCTTGGAACCGACAATGGAACAAG---GCATAGCACACCGC Smik.....: ACCATTTTAACGATTCTATGACTTCTAGCGGTACGGAGAATGATCCGTTTGTACCGAATATACAACACAATCCAAAAAAATATGAAGTCAACAATGGAAGAGA---ACAAGGCACCCCAC Sbay.....: ACCACTTCAATGACTCTATGACGTCTAGTGGAACGGAAAACGAGCTGTTCCTACCGAACATAAAGCATAATCCAAACGAGGTCGAAGTTGAAGATGAAAGCAAGCAACAAGCCACTCCGC consensus: * * ** ** ** ** **** ** ** ** ***** ** ** * ** ******* *** ** ******** * * * *** ** ** *** ** 1680~1800: Scer.....: TGAGTAAGTTAAAAGTTTCTGCCTCATTTGCGGATAAATTGCCTCAAAAGGAGGTACCATCTACAATACTGGTTCCAGAAGTGGAACAGCAAGAACCTTCTCAGAGTGAAAGAACACCGT Spar.....: TGGGTAAGTTAAAAGTTTCAGCCTCATTTGCAGATAAATTGCCTCAAAAGGAGGAACCAACTACAATATTGGTTCCGGAAGTAGAGCAGCAAGAACCTTTTCAGAGTGAGAAAGCTCCCT Smik.....: TGAGTAAATTAAAAGTTTCGGCATCATTTGCGGATAAGTTACCTCAAAAGGAGGAACCAACAACAAAACTAGTTACCGAAGTAGAGCAACCAGCGCCATTTCAGAGAGAGAAGCCGCCTT Sbay.....: TAAGTAAGTTAAAGGTCTCGGCCTCATTTGCGGATAAATTACCGCAAAAGGAGGAACCAACAACAAAATTGGCTCCGGAAGCTAAGCAACCAACTCCATCGCAGAGTGAAAAGACGCCCT consensus: * **** ***** ** ** ** ******** ***** ** ** ********** **** * **** * * * * * **** * ** * * ** * ***** ** * * ** * Scer_spli: DDDDDD Spar_spli: DDDDDD Sbay_spli: DDDDDD 1800~1920: Scer.....: CTTTGTTTTCGTCCGAAGGCTCTGGCTCAGAGTCGGAAGCACCCTTGCTTCCAGAGATCACCACGCCAGGTCCTCATCAGCCTATGGGTAATACCAGCAATAATGTGGTCGAAATGATAG Spar.....: CTTTGTTTTCATCCGAAGACTCAGGCTCAGAATCGGAAGCGTCCTTGCTTCCAGAGATTACCACACCAGGCCCTGACGAAAGTGTGGGAAGCACCAGCCAAAATGTGGTCGAAATTTTAG Smik.....: CTTTGTTTTCATCCGAGGAGTCAGGTTCTGAAGCGGAACCACCTTTGATTGCAGAGGTAACTACGCCAGATCCGGAGACAACTGTGAGAGACGCCAACGAAAATGTAGTGGAGATGATAG Sbay.....: CTCTGTTCTCATCTGATGAATCAAGCTCTGAAGCAGAAGAACCAATGGTTCCGGTGATAACCACTCCGGGACCTGATTCTACTAATGAAAACAGAAGCCATCATTTGGTTGAGGTGATAG consensus: ** **** ** ** ** * ** * ** ** * *** * ** ** * * * * ** ** ** * ** * * * * * ** * ** ** * *** Sbay_spli: BBBBBBB 1920~2040: Scer.....: ATACAGATAGT---AGTAACTTGGTATCGGATGAAGATGAAGTTTTAGTGCCTACAAGGATCGAGACTCCCCAATTACCCACAGAGAAAGACGTCGAAAAGTGTGAAGCAAGAGTGCAAG Spar.....: AAACTGATGGT---AGCAACTCGGAATCGGAATCGGATGAAGTTCTAGTGCCTACAAGGATCGAAACTCCTCAATTACCCACAACAAAAGACGTTGAAAAGTGTGAAGCAAGAGTGCAAG Smik.....: AAACCGATGAT---AGCGAATCGACATCGGATGAAGATGAAGTTTTGGTGCCTACCAGAATCGAAACTCCCCAATTACCTACCGCAAAAGATGTTAAAAAGAGTGAAACAAGAGTGCAAG Sbay.....: AAAACGATGGCGGCAGTGGAACGGCATCCGATGAGGATGATATCCTGGTGCCTACCAGGATCGAGACCCCTGAATTGGCCACAACTGAAGACGTTGAAAAGAGCGAAACCAGAGTTCAGG consensus: * * *** ** * *** ** ***** * * ******** ** ***** ** ** **** * ** **** ** ***** * *** * ***** ** * 2040~2160: Scer.....: AACTTCAAGAGGAAGTAAATGAGCAATTAGAGCATGAAAATGGGAGTGAATTTGATGTTAAGCAAGG------ATCTGGGAAGGTCGGGAACAG------------GCATAAGTTCAAAA Spar.....: AACTTCAGGAGGAAGTCAATGAACAATTGGAGGATGAAAATGAGAATGAATTTGATACAAAGCAAGGGCAAGAATCCGGAAAGATCGAGAACAGTACGCCAAAGAGGCATACATTTAAAA Smik.....: AACTTCAAGAGGAAATCAATGAGCAATTAGAGGATGACAGTGAAGTTGAATTTAGTACGAAGCAAGAACACAAATACGGAACCAATAAGGGCAGTGCACCAATGAGACACAAATTGAAAA Sbay.....: AGCTCCAGGAGGAAATAAATGAACAGTTGGAAAGCGATGACGAGGGTGAAGCCGACGCAAAGCAAGAAACGGATTCTGAAAAGAGTGCGCCAAAGAGGCAAAC---TCATAAATGTAAGA consensus: * ** ** ****** * ***** ** ** ** ** * **** ******* * * * * * ** * * ** * 2160~2280: Scer.....: GAGCACTCAAATTTTTGAGCAAATCATTACTGGCGCTATTTTTATTTTGCATATTCATTGTTATTCCTCTCTTATTTGGCCTCTGGTATAGAGAGCAAAGACTGCTCATAGGTTACTGTG Spar.....: AAATCGTCAAATTTCTGAGCAAATCACTGTTAGCGCTATTCCTATTCTGTATGTTCATAGTCGTTCCTCTTTTATTTGGCCTTTGGTACAGAGAACAAAGACTGCTAATAGGCTACTGCG Smik.....: AAGTCTTAAAACTATTGAGCAAATCATTGTTAGCGCTGTTTCTATTCTGCATATTTGTAGTCATTCCTCTCTTATTTGGCCTTTGGTATAGAGAACAAAGACTACTAGTAGGCTACTGCG Sbay.....: GAATTTTCAAGTTTATGGGCAAATCTCTACTTGCGACCATCCTATTCGGCGTATTCATAGTCATTCCTGCCCTCTTCGGGCTTTGGTATAGAGAGCAAAGAATACTAGTGGGTTATTGTG consensus: * * ** * ** ******* * * *** * **** * * ** * ** ***** * ** ** ** ***** ***** ****** * ** * ** ** ** * Spar_spli: DDDDDD 2280~2400: Scer.....: GGCATGAAGTACCATCCCATCGAGTTAGTGGCAATTCCTTCGAGTTTATTCAAAAACTGGATAATTTGTTGCAGGACTACAGACCGAAATGTATCCCTTGTCCACCCAATGGTATTTGTT Spar.....: GTCATGAAGTACCATCCCATCGAGTTAACGGGCAGTCCCCTGAGTTTGTCCAGAAATTGGATAATTGGTTACAGGACTACAGACCAAAATGTATCCCTTGTCCACCCAATGGTATTTGCT Smik.....: GTCATGAAGTCCCATCACATCGAGTCAATGGTCAGTCTGCTGAATTCATTCAGAAACTGGATCATTGGTTACAAGACTACAGGCCAAAATGCATTCCTTGTCCACCCAATGGTATTTGCT Sbay...