Analysis Summary
Job ID is 1259952407 TIME: 2009-12-04 13:46:47
Using the CEU Human HapMap and the HG17 Assembly of the Human Genome
The Functional Datasource is text_2006_12
Using default gene list (18875 genes):
http://www.broadinstitute.org/mpg/grail/functionDatabases/text_2006_12/allHumanGenes
A total of 18875 genes in this list
Queries and Seed Regions are set equal
There are 15 valid Query regions
29 query genes within gene list analyzed
Genomic Regions
For full set of genes used in the analysis for each genomic region click here:
Query Regions Seed Regions
REGION GRAIL p-value CANDIDATE GENE(S)
------ ------------- -----------------
rs11803731 0.0014628737 S100A11
rs10788819 0.0010316673 S100A10
rs1268789 0.0065978426 ANXA3
rs6732426 0.037392751 THADA
rs7349332 0.53733347 PRKAG3
rs7586898 0.43753551 MYCN
rs261360 0.89557041 PCNA
rs12623288 0.18008998 EPAS1
rs908922 0.058015134 LCE5A
rs3124314 0.0019500226 S100A11
rs6840361 N/A
rs8017455 0.2352352 TSHR
rs1454292 0.438858 CSMD1
rs17605562 0.29759047 LPIN1
rs17316633 0.80624454 EGF
Keywords Describing Functional Connections
'annexin'
'envelope'
'hypoxia'
'calcium'
'cluster'
'cytogenetic'
'neuroblastoma'
'thyroid'
'tumors'
'fatty'
'benign'
'barrier'
'adipose'
'epidermal'
'differentiation'
'late'
'adipocyte'
'adenomas'
'skin'
'levels'
GRAIL data for selected individual genes of interest
GENE GRAIL p-value SELECTED SIMILAR GENES (Rank in parantheses)
---- ------------- --------------------------------------------
S100A11 0.00048786254 S100A10(11), TCHHL1(26), ANXA3(35), RPTN(36), CSMD1(297), EGF(299), PCNA(592)
S100A10 0.00051596674 S100A11(8), ANXA3(10), EGF(107), TCHHL1(230), RPTN(525)
RPTN 0.0010000723 TCHH(3), LCE5A(12), S100A11(32), TCHHL1(54), S100A10(95), EGF(129), CRCT1(210), ZFP36L2(309)
ANXA3 0.0033043808 S100A10(12), S100A11(16), EGF(569)
THADA 0.018874499 TSHR(36), CSMD1(299)
LCE5A 0.029440952 LCE5A(1), RPTN(30), TCHH(41), S100A11(97), EGF(121), CRCT1(539), WNT10A(553)
TCHH 0.03909312 RPTN(2), LCE5A(44), S100A11(124), CRCT1(221), S100A10(248)
TCHHL1 0.095793057 S100A11(11), RPTN(25), S100A10(60)
LPIN1 0.11107839 ELOVL6(41), EGF(500)
GREB1 0.12700697 CSMD1(135)
NTSR2 0.16374632 EGF(149)
MYCN 0.17453556 NAG(7), DDX1(38), PCNA(325), EGF(548), CSMD1(579)
EPAS1 0.18008998 EGF(215), LPIN1(411), PCNA(512)
PRKAG3 0.226567 LPIN1(99)
TSHR 0.2352352 EGF(152), LPIN1(588)
NAG 0.3888626 MYCN(2), DDX1(23)
CSMD1 0.438858 GREB1(270)
THEM4 0.51098772
PCNA 0.52908644 EGF(568)
EGF 0.55982338 PCNA(570)
WNT6 0.6013456 WNT10A(2)
FRAS1 0.6923729
DDX1 1 MYCN(73)
C20orf30 1
CRCT1 1
ZFP36L2 1
ELOVL6 1
WNT10A 1 WNT6(1)
CDS2 1