Mouse RH Map

Whitehead Mouse RH Data: Final Release (Release 10)

Release 10 text file is a large tab delimited text file containing the following fields: chromosome, marker locus name, mapping lab, marker type, lab assay name, genbank accession number, framework identifier or placement identifier, cumulative centiMorgan position from genetic map, cumulative centiRay position from RH map, intermarker centiRay distance from RH map, forward primer sequence, reverse primer sequence, product length, consensus RH vector, marker sequence, brief EST description, and vector confidence.

Whitehead T31 hybrid order is a list of which hybrids we utilized (in order) to create the consensus vector for mapping.

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Map Statistics by Chromosome

Release 10 Radiation Hybrid Maps

The framework markers in this release are identical to those in release one. Placement markers were positioned in their most likely position within respective genetic linkage groups within the framework reference map if they showed strong pairwise linkage (lod>9).

The following pictures represent the radiation hybrid maps for the 20 mouse chromosomes. The GIF and PICT images have framework markers printed in black and placement markers printed in red. The centiRay units shown represent inter-marker distances. The text versions of each map contain four columns. Column one is the marker name. Column two is the inter-marker distance in centiRays. Column three is whether the marker is a framework or a placement marker and if a placement marker its lod for placement confidence is shown. The fourth column is the consensus RH vector generated for that marker.

Genetic Maps

The following pictures represent genetic maps of the genetic markers used to construct the RH framework map. Markers in black are placement markers from the WIBR/CGR genetic map. Markers in blue are framework markers from the WIBR/CGR genetic map. Markers in green are placement markers from the WIBR/CGR genetic map that are also present on the EUCIB map. Markers in light blue are framework markers from the WIBR/CGR genetic map that are also present on the EUCIB map.

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