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IGV Quick Start
Start IGV
Load the GISTIC Data
Change Display Options
Zoom and Scroll
Sort Tracks Based on Region of Interest
IGV User Guide
User Interface
Main Window
Menu Bar
Tool Bar
Pop-up Menus
Preferences
Color Legends
Navigating
Loading a Genome
Loading Data and Attributes
Viewing Attributes
Viewing Data
Default Display
Changing the Display
Expression Data
Mutation Data
RNAi Data
Segmented Data
Viewing Alignments
Sorting, Grouping, and Filtering
Saving and Restoring Sessions
Configuring a Data Server
Creating HTML Links to IGV
Controlling IGV through a Port
Hosted Genomes
igvtools
Early Access Features
Running IGV with a batch file
File Formats
File Extension Identifies Format
Recommended File Formats
BAM
BED
CBS
CN
Cytoband
FASTA
GCT
genePred
GFF
GISTIC
HDF5
IGV
LOH
MUT
RES
SAM
Sample Information
SEG
SNP
TAB
TDF
Track Line
Type Line
WIG
Release Notes
IGV 1.1
IGV 1.2
IGV 1.3
IGV 1.3.1
IGV 1.4
IGV 1.5 (EA)
Acknowledgments
Hosted Datasets Acknowledgments
Software Acknowledgments
Contact
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Cancer Program
© 2009 Broad Institute
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