Genome IDs
Genome IDs are required for the tile and count functions of igvtools. The following table contains a complete list of the genome IDs in IGV.
| Display name | Genome ID |
| A. nidulans (4.1) | anidulans_4.1 |
| A. thaliana (TAIR 8) | tair8 |
| A. thaliana (TAIR 9) | tair9 |
| A. thaliana (TAIR 10) | tair10 |
| Aplysia | Aplysia |
| C. albicans | candida |
| C. elegans (ce4) | ce4 |
| C. elegans (ce6) | ce6 |
| C. savignyi (v2.1 reftigs) | CSavignyi_v2.1 |
| Chicken (galGal3) | galGal3 |
| Chimp (panTro2) | panTro2 |
| Cow (b. Taurus UMG 3.0) | btaurus_3.0 |
| Cow (bosTau4) | bosTau4 |
| D. discoideum (05-13-2009) | D.discoideum |
| D. melanogaster (5.9) | dmel_5.9 |
| D. melanogaster (dm2) | dm2 |
| D. melanogaster (dm3) | dm3 |
| D. melanogaster (r5.22) | dmel_r5.22 |
| D. melanogaster (r5.33) | dmel_r5.33 |
| Dog (canFam2) | canFam2 |
| E. coli K-12 MG1655 (U00096.2) | U00096.2 |
| E. coli K-12 MG1655 (NC_000913.2) | NC_000913.2 |
| G. lamblia (2.0) | Glamblia_2.0 |
| Guinea Pig (cavPor3) | cavPor3 |
| Human (1kg reference, b36) | 1kg_ref |
| Human (b37) | b37 |
| Human hg16 | hg16 |
| Human hg17 | hg17 |
| Human hg18 | hg18 |
| Human hg19 | hg19 |
| L. major (Friedlin) | lmjr |
| M. oryzae (mg8) | mg8 |
| Maize (B73 4a.53) | B73 |
| Maize (ZmB73 5a) | ZmB73_5a |
| N. crassa OR74A (NC10) | nc10 |
| Neurospora crassa (v3) | ncrassa_v3 |
| O. Sativa (release 6) | O_Sativa_r6 |
| O. Sativa (release 6.1) | osativa.r6.1 |
| Opossum (monDom5) | monDom5 |
| P. patens (V 1.2) | ppatens_1.2 |
| Plasmodium (3D7 v2.1) | Plasmodium_3D7_v2.1 |
| Plasmodium (3D7 v5.5) | Plasmodium_3D7_v5.5 |
| Plasmodium (3D7 V7.0) | PlasmoDB_7.0 |
| Plasmodium (6.1) | Plasmodium_6.1 |
| Rat (rn4) | rn4 |
| Rhesus (rheMac2) | rheMac2 |
| S. cerevisiae (sacCer1) | sacCer1 |
| S. cerevisiae (sacCer2) | sacCer2 |
| S. cerevisiae (sk1) | sk1 |
| S. pombe (7/09) | spombe_709 |
| S. pombe (EF 1.55) | spombe_1.55 |
| S. purpuratus (2.1+) | spur_2.1 |
| S. purpuratus (2.5) | spur_2.5 |
| Stickleback (gasAcu1) | gasAcu1 |
| Sus Scrofa (9.56) | susScrofa |
| T. brucei (927) | tb927 |
| T. brucei gambiense | tbgambi |
| T. castaneum (2.0) | tcas_2.0 |
| T. castaneum (3.0) | tcas_3.0 |
| T. gondii (ME49) | me49 |
| X. tropicalis (xenTro2) | xenTro2 |
| Zebrafish (Zv7/danRer5) | zebrafish |
| Zebrafish (Zv8/danRer6) | danRer6 |
| Zebrafish (Zv9/danRer7) | danRer7 |