ICBP Data & Analysis Portal (ICBP)
 The ICBP Data and Analysis Portal serves as an information hub of the ICBP program enabling resource sharing, annotation, and data integration and analysis. The portal provides access to datasets, analysis tools, visualizations, and other resources produced by the ICBP Centers for Cancer Systems Biology.
Development of the ICBP Data and Analysis Portal was performed by the Broad Institute on behalf of the ICBP.
News / Events
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New User?
Please register for full access to the data and analyses tools ICBP provides.
Terms of Access Register
Tutorials / Manuals
Tutorials, analysis descriptions and other documentation is available at:
HELP > DOCUMENTS
Publications
 Integrated analysis of breast cancer cell lines reveals unique signaling pathways, Heiser LM et al., Genome Biology, 2009
Trait variability of cancer cells quantified by high-content automated microscopy of single cells. , Quaranta V et al., Methods in Enzymology, 2010
Migration of isogenic cell lines quantified by dynamic multivariate analysis of single-cell motility. , Harris MP et al., Cell Adhesion & Migration, 2008
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What you can do on this portal
Search for information
Enter a keyword to search for genes, news items and publications. Search
results for a gene include links to annotations and analyses.
Data Sets
 Browse, analyze and download
studies and data sets.
BROWSE > DATA
Public Data:
Studies: 9
Samples: 1457
Data Sets: 33
| Affy SNP: |
3 |
| Segmented copy number: |
1 |
| Sample annotation: |
10 |
| Protein lysate array: |
1 |
| Exon array: |
1 |
| Cell Motility: |
3 |
| Gene expression: |
7 |
| Agilent aCGH: |
1 |
| RNAi enrichment: |
1 |
| ChIP-Chip: |
1 |
| Exon-exon: |
1 |
| MeDIP-Chip: |
1 |
| GISTIC Results: |
1 |
| Undefined: |
2 |
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Analysis Tools
 The portal provides the
following analysis tools:
Integrative Genomics Viewer (IGV)
Visualize a data set in the Integrative Genomics Viewer (IGV), a high-performance
visualization tool for interactive exploration of large integrated data sets.
Differential Expression Analysis
Find genes that are significantly differentially expressed between two user-defined classes
of samples from an expression data set available on this portal.
Gene co-expression
View the top 20 genes in a data set that are co-expressed with a gene of interest.
Gene Set Enrichment Analysis (GSEA)
Find pathway gene sets correlated with a gene of interest. Domain
experts curate the pathway gene sets based on data from several online pathway databases.
ANALYSIS TOOLS
Sample Sets
 Create your own sample sets based on a
large number of available criteria and use them in differential expression analysis.
CREATE SAMPLE SETS
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