Table: Gene sets enriched in phenotype FEMALE (17 samples) [plain text format]

	GS	GS DESC	SIZE	ES	NES	NOM p-val	FDR q-val	FWER p-val
1	XINACT_MERGED	Details ...	20	-0.80	-2.28	0.000	0.000	0.000
2	GNF_FEMALE_GENES	Details ...	85	-0.48	-1.87	0.010	0.067	0.102
3	cell_cycle_arrest	Details ...	33	-0.54	-1.68	0.011	0.502	0.441
4	mRNA_splicing	Details ...	50	-0.60	-1.64	0.034	0.537	0.505
5	telPathway	Details ...	18	-0.58	-1.60	0.029	0.586	0.576
6	INSULIN_2F_UP	Details ...	196	-0.48	-1.60	0.047	0.498	0.586
7	LEU_DOWN	Details ...	166	-0.54	-1.52	0.116	0.810	0.708
8	RAP_DOWN	Details ...	214	-0.52	-1.52	0.135	0.726	0.712
9	SA_G1_AND_S_PHASES	Details ...	15	-0.51	-1.48	0.071	0.856	0.760
10	proteasomePathway	Details ...	21	-0.68	-1.47	0.100	0.824	0.773
11	Proteasome_Degradation	Details ...	31	-0.64	-1.45	0.122	0.853	0.804
12	ST_Dictyostelium_discoideum_cAMP_Chemotaxis_Pathway	Details ...	31	-0.46	-1.45	0.085	0.785	0.805
13	GLUT_DOWN	Details ...	288	-0.48	-1.44	0.172	0.749	0.810
14	mRNA_processing	Details ...	43	-0.55	-1.41	0.161	0.841	0.841
15	cellcyclePathway	Details ...	23	-0.51	-1.37	0.175	0.958	0.870
16	mtorPathway	Details ...	23	-0.52	-1.37	0.168	0.901	0.870
17	SIG_Regulation_of_the_actin_cytoskeleton_by_Rho_GTPases	Details ...	33	-0.36	-1.31	0.109	1.000	0.903
18	GLUCOSE_DOWN	Details ...	148	-0.35	-1.30	0.190	1.000	0.910
19	rhoPathway	Details ...	30	-0.45	-1.29	0.179	1.000	0.914
20	MAP00193_ATP_synthesis	Details ...	18	-0.44	-1.29	0.189	1.000	0.917
21	MAP03070_Type_III_secretion_system		18	-0.44	-1.29	0.189	1.000	0.917
22	TCA		15	-0.61	-1.29	0.249	0.981	0.919
23	raccycdPathway		22	-0.50	-1.29	0.252	0.943	0.919
24	Cell_Cycle		76	-0.44	-1.28	0.244	0.927	0.922
25	MAP00195_Photosynthesis		19	-0.42	-1.26	0.200	0.968	0.933
26	radiation_sensitivity		27	-0.41	-1.23	0.246	1.000	0.942
27	tRNA_Synthetases		19	-0.54	-1.22	0.325	1.000	0.945
28	GLUCOSE_UP		38	-0.37	-1.22	0.225	1.000	0.945
29	crebPathway		26	-0.39	-1.19	0.277	1.000	0.953
30	UPREG_BY_HOXA9		33	-0.42	-1.18	0.303	1.000	0.954
31	MAP00970_Aminoacyl_tRNA_biosynthesis		18	-0.51	-1.18	0.338	1.000	0.955
32	CR_DNA_MET_AND_MOD		24	-0.42	-1.17	0.302	1.000	0.957
33	mta3Pathway		15	-0.37	-1.17	0.259	1.000	0.958
34	CR_CELL_CYCLE		82	-0.36	-1.15	0.324	1.000	0.958
35	Krebs-TCA_Cycle		28	-0.43	-1.15	0.341	1.000	0.958
36	il6Pathway		21	-0.40	-1.15	0.294	1.000	0.959
37	G13_Signaling_Pathway		28	-0.39	-1.12	0.340	1.000	0.964
38	ST_Interleukin_4_Pathway		26	-0.38	-1.11	0.345	1.000	0.970
39	aktPathway		19	-0.37	-1.10	0.365	1.000	0.973
40	HTERT_UP		110	-0.33	-1.10	0.359	1.000	0.973
41	Wnt_Signaling		53	-0.28	-1.10	0.308	1.000	0.975
42	Glycogen_Metabolism		35	-0.35	-1.10	0.363	1.000	0.975
43	rasPathway		22	-0.41	-1.09	0.372	1.000	0.976
44	MAP00030_Pentose_phosphate_pathway		16	-0.40	-1.09	0.373	1.000	0.976
45	MAP00710_Carbon_fixation		16	-0.38	-1.09	0.373	1.000	0.977
46	MAP00260_Glycine_serine_and_threonine_metabolism		23	-0.34	-1.08	0.354	1.000	0.978
47	DNA_DAMAGE_SIGNALLING		93	-0.30	-1.07	0.387	1.000	0.980
48	FETAL_LIVER_HS_ENRICHED_TF_JP		81	-0.28	-1.07	0.382	1.000	0.981
49	drug_resistance_and_metabolism		97	-0.28	-1.06	0.389	1.000	0.982
50	GLYCOGEN		20	-0.35	-1.05	0.408	1.000	0.984
51	ST_Phosphoinositide_3_Kinase_Pathway		34	-0.36	-1.05	0.402	1.000	0.985
52	sppaPathway		21	-0.34	-1.05	0.392	1.000	0.985
53	igf1mtorPathway		20	-0.38	-1.04	0.460	1.000	0.985
54	hcmvPathway		16	-0.44	-1.04	0.441	1.000	0.985
55	bcl2family_and_reg_network		23	-0.32	-1.04	0.421	1.000	0.985
56	cell_cycle_regulator		25	-0.38	-1.04	0.441	1.000	0.985
57	ST_p38_MAPK_Pathway		36	-0.32	-1.03	0.427	1.000	0.986
58	P53_UP		40	-0.29	-1.03	0.419	1.000	0.986
59	Fatty_Acid_Degradation		18	-0.33	-1.03	0.418	0.986	0.987
60	tumor_supressor		23	-0.31	-1.02	0.428	0.999	0.990
61	SA_B_CELL_RECEPTOR_COMPLEXES		24	-0.35	-1.01	0.446	0.998	0.990
62	ecmPathway		21	-0.38	-1.01	0.439	0.989	0.990
63	KRAS_TOP100_CONTROL		66	-0.26	-1.00	0.454	0.997	0.992
64	erkPathway		30	-0.31	-1.00	0.444	0.983	0.992
65	dcPathway		20	-0.37	-1.00	0.483	0.988	0.992
66	hifPathway		15	-0.33	-0.99	0.469	0.991	0.992
67	mitochondriaPathway		21	-0.32	-0.99	0.475	0.983	0.992
68	gsk3Pathway		26	-0.29	-0.99	0.481	0.980	0.992
69	spryPathway		17	-0.38	-0.99	0.486	0.967	0.992
70	PGC		392	-0.27	-0.98	0.492	0.972	0.993
71	erk5Pathway		17	-0.39	-0.98	0.519	0.962	0.993
72	igf1rPathway		15	-0.40	-0.97	0.524	0.978	0.993
73	INSULIN_2F_DOWN		32	-0.29	-0.96	0.522	0.973	0.993
74	human_mitoDB_6_2002		408	-0.29	-0.96	0.502	0.970	0.993
75	CR_REPAIR		39	-0.31	-0.96	0.512	0.963	0.993
76	MAP00561_Glycerolipid_metabolism		46	-0.26	-0.95	0.524	0.966	0.993
77	Electron_Transport_Chain		85	-0.41	-0.95	0.589	0.956	0.993
78	g1Pathway		26	-0.33	-0.95	0.525	0.945	0.994
79	pmlPathway		15	-0.33	-0.95	0.526	0.938	0.994
80	MAP00051_Fructose_and_mannose_metabolism		23	-0.33	-0.94	0.520	0.939	0.994
81	CR_CYTOSKELETON		23	-0.30	-0.94	0.554	0.932	0.994
82	arapPathway		20	-0.32	-0.94	0.542	0.930	0.994
83	caspasePathway		22	-0.30	-0.94	0.568	0.924	0.994
84	MAP00620_Pyruvate_metabolism		31	-0.30	-0.94	0.523	0.915	0.994
85	mitochondr		431	-0.27	-0.92	0.551	0.942	0.995
86	PROLIF_GENES		394	-0.19	-0.91	0.603	0.951	0.995
87	GO_0005739		161	-0.27	-0.91	0.548	0.944	0.995
88	ptdinsPathway		20	-0.35	-0.91	0.548	0.936	0.995
89	VOXPHOS		83	-0.39	-0.91	0.611	0.928	0.995
90	MAP00330_Arginine_and_proline_metabolism		38	-0.25	-0.91	0.595	0.922	0.995
91	cell_cycle_checkpoint		26	-0.30	-0.90	0.584	0.922	0.995
92	CR_TRANSCRIPTION_FACTORS		68	-0.23	-0.90	0.607	0.918	0.995
93	pparaPathway		53	-0.26	-0.90	0.597	0.912	0.995
94	cell_motility		108	-0.21	-0.90	0.638	0.903	0.995
95	keratinocytePathway		46	-0.25	-0.90	0.580	0.900	0.995
96	cdmacPathway		16	-0.34	-0.90	0.597	0.892	0.995
97	MAP00310_Lysine_degradation		17	-0.31	-0.89	0.585	0.894	0.995
98	MAP00910_Nitrogen_metabolism		21	-0.27	-0.89	0.644	0.891	0.996
99	cell_proliferation		214	-0.19	-0.89	0.700	0.887	0.996
100	tollPathway		33	-0.26	-0.89	0.600	0.880	0.996
101	LEU_UP		117	-0.26	-0.88	0.580	0.879	0.996
102	ANDROGEN_UP_GENES		60	-0.22	-0.88	0.680	0.876	0.996
103	p38mapkPathway		39	-0.26	-0.88	0.636	0.872	0.996
104	insulin_signalling		102	-0.21	-0.88	0.660	0.872	0.996
105	chemicalPathway		21	-0.32	-0.88	0.640	0.866	0.996
106	FA		21	-0.31	-0.87	0.604	0.881	0.997
107	eif4Pathway		24	-0.29	-0.86	0.608	0.878	0.998
108	il2rbPathway		37	-0.27	-0.86	0.622	0.880	0.998
109	HEMO_TF_LIST_JP		86	-0.21	-0.86	0.722	0.878	0.998
110	SIG_CHEMOTAXIS		42	-0.24	-0.85	0.658	0.882	0.998
111	GLYCOL		21	-0.27	-0.85	0.645	0.878	0.998
112	tpoPathway		23	-0.30	-0.85	0.633	0.874	0.998
113	TGF_Beta_Signaling_Pathway		34	-0.25	-0.84	0.717	0.879	0.998
114	gleevecPathway		22	-0.30	-0.84	0.636	0.872	0.998
115	MAP00480_Glutathione_metabolism		20	-0.28	-0.84	0.670	0.870	0.998
116	ST_Integrin_Signaling_Pathway		76	-0.23	-0.83	0.691	0.877	0.999
117	SIG_PIP3SIGINCARDIACMYOCTES		64	-0.23	-0.83	0.714	0.881	0.999
118	MAP00640_Propanoate_metabolism		20	-0.25	-0.82	0.746	0.884	0.999
119	GLUCO		31	-0.24	-0.82	0.660	0.885	0.999
120	p53Pathway		16	-0.32	-0.81	0.671	0.883	0.999
121	CBF_LEUKEMIA_DOWNING_AML		75	-0.20	-0.80	0.829	0.900	1.000
122	MAP00190_Oxidative_phosphorylation		43	-0.27	-0.80	0.705	0.892	1.000
123	nfatPathway		52	-0.21	-0.79	0.772	0.909	1.000
124	pgc1aPathway		22	-0.27	-0.78	0.719	0.915	1.000
125	SIG_InsulinReceptorPathwayInCardiacMyocytes		50	-0.23	-0.78	0.720	0.913	1.000
126	cd40Pathway		15	-0.32	-0.78	0.717	0.911	1.000
127	ST_G_alpha_i_Pathway_		36	-0.24	-0.78	0.756	0.904	1.000
128	HUMAN_CD34_ENRICHED_TF_JP		202	-0.19	-0.78	0.744	0.897	1.000
129	MAP00120_Bile_acid_biosynthesis		22	-0.25	-0.78	0.778	0.894	1.000
130	il3Pathway		15	-0.30	-0.77	0.733	0.895	1.000
131	etsPathway		16	-0.26	-0.77	0.770	0.889	1.000
132	RAP_UP		175	-0.21	-0.77	0.745	0.884	1.000
133	hivnefPathway		57	-0.21	-0.77	0.754	0.887	1.000
134	MAP00020_Citrate_cycle_TCA_cycle		18	-0.32	-0.76	0.695	0.885	1.000
135	fatty_acid_metabolism		25	-0.22	-0.76	0.825	0.885	1.000
136	MAP00240_Pyrimidine_metabolism		43	-0.23	-0.76	0.728	0.880	1.000
137	igf1Pathway		20	-0.27	-0.76	0.751	0.878	1.000
138	actinYPathway		18	-0.25	-0.75	0.753	0.894	1.000
139	INS		25	-0.24	-0.73	0.797	0.909	1.000
140	MAP00010_Glycolysis_Gluconeogenesis		51	-0.20	-0.73	0.824	0.911	1.000
141	gcrPathway		18	-0.25	-0.72	0.781	0.912	1.000
142	cardiacegfPathway		17	-0.26	-0.72	0.856	0.907	1.000
143	rarrxrPathway		15	-0.29	-0.72	0.771	0.915	1.000
144	CR_PROTEIN_MOD		146	-0.18	-0.71	0.852	0.914	1.000
145	ptenPathway		17	-0.25	-0.71	0.779	0.915	1.000
146	SIG_PIP3_signaling_in_B_lymphocytes		34	-0.23	-0.70	0.809	0.916	1.000
147	biopeptidesPathway		37	-0.22	-0.70	0.821	0.915	1.000
148	metPathway		34	-0.21	-0.70	0.851	0.909	1.000
149	cell_growth_and_or_maintenance		65	-0.18	-0.69	0.920	0.916	1.000
150	mapkPathway		86	-0.19	-0.69	0.899	0.914	1.000
151	SA_PTEN_PATHWAY		17	-0.26	-0.69	0.843	0.909	1.000
152	arfPathway		15	-0.24	-0.69	0.847	0.905	1.000
153	rac1Pathway		22	-0.23	-0.68	0.856	0.904	1.000
154	MAP00562_Inositol_phosphate_metabolism		19	-0.24	-0.68	0.858	0.901	1.000
155	MAPK_Cascade		22	-0.21	-0.67	0.903	0.905	1.000
156	tnfr1Pathway		28	-0.21	-0.67	0.862	0.900	1.000
157	deathPathway		32	-0.20	-0.66	0.920	0.914	1.000
158	tnfr2Pathway		18	-0.25	-0.66	0.839	0.910	1.000
159	vegfPathway		26	-0.21	-0.64	0.896	0.927	1.000
160	GLUT_UP		274	-0.19	-0.64	0.838	0.925	1.000
161	CR_TRANSPORT_OF_VESICLES		23	-0.22	-0.63	0.896	0.922	1.000
162	stressPathway		25	-0.19	-0.62	0.951	0.928	1.000
163	hdacPathway		29	-0.19	-0.62	0.930	0.931	1.000
164	il2Pathway		22	-0.21	-0.61	0.907	0.928	1.000
165	S1P_Signaling		23	-0.20	-0.60	0.938	0.934	1.000
166	epoPathway		19	-0.21	-0.60	0.898	0.929	1.000
167	tidPathway		17	-0.21	-0.57	0.946	0.951	1.000
168	achPathway		15	-0.18	-0.54	0.974	0.967	1.000
169	ST_JNK_MAPK_Pathway		40	-0.15	-0.51	0.989	0.977	1.000
170	ndkDynaminPathway		18	-0.16	-0.50	0.990	0.974	1.000
171	Matrix_Metalloproteinases		26	-0.17	-0.49	0.987	0.975	1.000