GSEA Report for Dataset Diabetes_collapsed.gct

Enrichment in phenotype: NGT (17 samples)

• 124 / 318 gene sets had enrichment in phenotype NGT
• 8 gene set(s) are significant at nominal pvalue < 5%
• 3 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Enrichment in phenotype: DMT (17 samples)

• 194 / 318 gene sets had enrichment in phenotype DMT
• 12 gene set(s) are significant at nominal pvalue < 5%
• 0 gene set(s) are significant at FDR < 25%
• Detailed enrichment results in html format
• Detailed enrichment results in excel format (tab delimited text)

Gene markers for the NGT versus DMT comparison

• The dataset had 15056 features (genes)
• # of markers for phenotype NGT: 7993 (53.1% ) with correlation area 53.4%
• # of markers for phenotype DMT: 7063 (46.9% ) with correlation area 46.6%
• Detailed rank ordered gene list for all features in the dataset
• Heat map and gene list correlation profile for all features in the dataset

Advanced statistics and plots

• Gene set size filters (min=15, max=500) resulted in filtering out 204 / 522 gene sets
• The remaining 318 gene sets were used in the analysis. List of gene sets and their sizes (restricted to probes in the specified dataset)
• Enrichment results and additional statistics for phenotype NGT (excel, html)
• Enrichment results and additional statistics for phenotype DMT (excel, html)
• Plot of p-values vs. NES
• Plot of global observed and null densities (after area normalization)
• Global ES histogram

Other

• Parameters used for this analysis