Updating the Tribble library

From GSA

Updating the revision of Tribble on the system is a relatively straightforward task if the following steps are taken.

• Make sure that you've checked your changes into Tribble; unversioned changes will be problematic, so you should always check in so that you have a unique version number to identify your release.
• Once you've checked-in Tribble, make sure to svn update, and then run svnversion. This will give you a version number which you can use to name your release. Lets say it was 82. If it contains an M (i.e. 82M) this means your version isn't clean (you have modifications that are not checked in), don't proceed.
• from the Tribble main directory, run ant clean, then ant (make sure it runs successfully), and ant test (also make sure it completes successfully).
• copy dist/tribble-0.1.jar (or whatever the internal Tribble version currently is) to your checkout of the GATK, as the file ./settings/repository/org.broad/tribble-<svnversion>.jar.
• Copy the current XML file to the new name, i.e. from the base GATK trunk directory:

cp ./settings/repository/org.broad/tribble-<current_svnversion>.xml ./settings/repository/org.broad/tribble-<svnversion>.xml

• Edit the ./settings/repository/org.broad/tribble-<svnversion>.xml with the new correct version number and release date (here we rev 81 to 82).

<ivy-module version="1.0">
    <info organisation="org.broad" module="tribble" revision="81" status="integration" publication="20100526124200" />
</ivy-module>

To:

<ivy-module version="1.0">
    <info organisation="org.broad" module="tribble" revision="82" status="integration" publication="20100528123456" />
</ivy-module>

Notice the change to the revision number and the publication date.

• Remove the old files svn remove ./settings/repository/org.broad/tribble-<current_svnversion>.*
• Add the new files svn add ./settings/repository/org.broad/tribble-<new_svnversion>.*
• Make sure you're using the new libraries to build: remove your ant cache: rm -r ~/.ant/cache.
• Run an ant clean, and then make sure to test the build with ant integrationtest and ant test.
• Any check-in from the base SVN directory will now rev the Tribble version.