Tagged with #softclip
0 documentation articles | 0 announcements | 1 forum discussion


No posts found with the requested search criteria.
No posts found with the requested search criteria.
Comments (1)

Hi, Some aligners produce Smith-Waterman alignments and may soft clip bases from a read when there are indels or mismatches near the ends of the reads. I was wondering if you include these bases in the realignment process? And if not whether you might consider making it an option? Thanks, Colin