Tagged with #presentations
4 documentation articles | 8 announcements | 1 forum discussion


Comments (0)

Mauricio Carneiro presented this slide deck at the workshop organized by Mnt Sinai School of Medicine on December 10, 2013. The other presentations made at the workshop were posted here.

Please note that we cannot guarantee content hosted on other websites; if outgoing links becomes outdated please let us know.

Comments (2)

This workshop included two modules:

  • Best Practices for Variant Calling with the GATK

    The core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. View the workshop materials to learn why each step is essential to the calling process, what are the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset.

  • Building Analysis Pipelines with Queue

    An introduction to the Queue pipelining system. View the workshop materials to learn about how to use Queue to create analysis pipelines, scatter-gather them and run them locally or in parallel on a computing farm.

Comments (0)

This workshop covered the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. View the workshop materials to learn why each step is essential to the calling process, what are the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset.

Comments (0)

The slides from today's webinar are available as of now in the GSA team Dropbox at this link, and will be on the documentation website shortly.

Comments (0)

This week, three lucky GATK team members are teaching an invited workshop at Mahidol University in Bangkok, Thailand! The slide decks for each day will be available at the start of the day here in the GSA dropbox. After the workshop, all materials will be available in the Presentations section of the GATK website as usual.

Comments (0)

The presentation videos for:

  • Day 1 (Best Practices for Variant Calling with GATK)
  • Day 2 (Building Analysis Pipelines with Queue)

are available here: http://www.broadinstitute.org/gatk/guide/events?id=3391

Comments (0)

Slides for :

  • Day 1 (Best Practices for Variant Calling with GATK)
  • Day 2 (Building Analysis Pipelines with Queue)

are available at this link in our DropBox slide archive :

https://www.dropbox.com/sh/ryz7bx4aeqc7mkl/44Q_2jvIyH

Comments (1)

The slides from the July 2013 Best Practices workshop are available here:

https://www.dropbox.com/sh/jhlk451jntywfdy/vJqbKTZZd_

The videos will be put online once they are processed.

Comments (0)

Hi everyone,

The slides of the presentations that Mark DePristo and Mauricio Carneiro gave at AGBT this week are online!

Please see this page:

http://www.broadinstitute.org/gatk/guide/events?id=2247

Comments (4)

Here is a Dropbox link to the presentations given at the Dec 4-5 GATK workshop:

https://www.dropbox.com/sh/0puyz82ecswm4ig/V2fW--1ZFS

Comments (0)

Hi everyone,

The GATK team recently presented a broad overview of sequencing analysis and variant calling using GATK 2.0 at the Broad Institute Medical and Population Genetics Program meeting. This slides are a great introduction to all the latest improvements in the GATK that are in version 2.0.

Comments (2)

Hi,

I recall in the old gatk introduction page, there is a link to a page (drop box?) that contains all presentation slides for 2010 and 2011 workshop slides and some other presentation slides. I could not find the link now. Could you point me to the URL location?

Thanks in advance for your help.

-XZ