GATK

Tagged with #galaxy
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Download GATK version 1.4

Hi, I want to run GATK in Galaxy and the required version is 1.4. Can you tell me where I can download this from? I've got the source for version 1.4 from github, so I can build it if need be, but I was wondering if there's a repository for older binaries. Many thanks, Graham

ERROR in Running GATK Unified Genotyper module?

Dear GATK Users,

I am using GATK for first time. I am doing Targeted reseq Analysis. while i am running Unified Genotyper in Galaxy interface. it gives error message as mentioned below..

"ERROR MESSAGE: The fasta file you specified (/tmp/tmp-gatk-WBrGTf) does not exist." But i places the Fasta file path in .loc file. Also could anyone tell what are the preprocessing steps before using Bam file for Unified Genotyper??

Your answers are very much Appericiated.

Thanks Sridhar