Cannot get GATK 2.0. The page is non-responsive after accepting terms and conditions. It is the same for chrome, firefox and opera. I'm connecting from Ubuntu 12.04 x64 from Barcelona, Spain. I can get GATKlite and older releases through ftp...
I used to update GATK 1.x through a couple of linux commands, as previously the direct download link used to be this one: ftp://ftp.broadinstitute.org/pub/gsa/GenomeAnalysisTK/GenomeAnalysisTK-latest.tar.bz2
is it necessary to download current GATK 2.x through the web, accessing (and login into) the current downloads page? http://www.broadinstitute.org/gatk/auth?package=GATK isn't there a way to direct download GATK's latest version as we were able before?
For some reason I don't know, I keep getting "network error" when trying to download the latest GATK2.6-5 from the broadinstitute.org webpage. It hangs at 12.3MB out of the total size of 12.5MB. So I was wondering if I could download the latest GATK2.6-5 from the FTP server or Git? I need the pre-compiled version. thanks