Tagged with #analyzememoryconsumption
1 documentation article | 0 announcements | 2 forum discussions


No posts found with the requested search criteria.
Comments (3)

Hi,

I tried to use DepthOfCoverage to figure out the coverage of 50 whole exome sequencing data. It works fine for single sample, however, the program always complained about memory issue, even I provide 100 GB as "-Xmx100g". Any suggestions for the problem? There is a option "--read_buffer_size", which seems to be helpful, how should set the value ?

Comments (3)

Is there any rule of thumb for allocating memory through "bsub" for running DataProcessingPipeline per bam file or per number of reads ?

Thanks