-T CombineVariants -genotypeMergeOptions UNIQUIFY Is UNIQUIFY the default? I want every variant in the output file with each individual in the same column
Other teams have developed their own tools to work on top of the GATK framework. This section lists several of these software packages as well as links to documentation and contact information for their respective authors.
Please keep in mind that since this is not our software, we make no guarantees as to their use and cannot provide any support.
I have two draft genomes that I would like to compare and I was wondering whether gatk supported such studies?
Thanks for your help!