GATK 2.7.4 -> PrintReads -> MESSAGE: Argument with name 'ds' isn't defined
Posted in Ask the GATK team | Last updated on


Comments (5)

Hello,

I ran PrintReads with option -ds and got the error message showed in the title. Looking into docs, I see that there are other options for downsampling under CommandLineGATK like downsample to coverage, downsample to fraction, downsampling type. Am I right to think that the previous option -ds is equivalent to -dfrac combined with -dt ALL_READS?

Best regards, Jacek


Return to top Comment on this article in the forum