how to understand this "1/1:0,1:1:3:36,3,0" in VCF?
Posted in Ask the GATK team | Last updated on


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One of my samples has this entry "1/1:0,1:1:3:36,3,0" in the information field, and from my understanding, the genotype is homo variant, because it has 1/1. However, I do not understand why. Since it has 0 REF reads and has only 1 ALT read, how does GATK tell this variant is a homo variant??


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