Randomly sampling vcf
Posted in Ask the GATK team | Last updated on


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When I use SelectVariants -fraction option more than once, I always get the same variant sites. The same happens for RandomlySplitVariants. Is there a way of randomly taking a fraction of the vcf that is not always the same, but truly random (which means it will pick different sites each time, of course with a certain probability of including common sites)?


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