DepthOfCoverage (without -L option) output
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Hi there! I tried to analyse the depth of coverage of my exome data using GATK DepthOfCoverage java -Xmx${heap}m \ -Djava.io.tmpdir=$processed_bam/tmp_folder_dept \ -jar $gatk \ -T DepthOfCoverage \ -omitBaseOutput \ -omitLocusTable \ -R $GRCh37_ref_WholeGenome \ -I $file \ -o $coverage/${samplename}.coverage.dept I am not interested in particular genomic regions, so I haven't a target list file. How were the intervals determined in "_interval_statistics" output file? Where can I obtain an interval target list file including all exons in the human genome? Thank you very much!

Fulvio


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