HaplotypeCaller and VariantRecalibrator with QUEUE
Posted in Ask the GATK team | Last updated on


Comments (4)

Hi team, I have a basic question, sorry. I am trying to use HaplotypeCaller and VariantRecalibrator with QUEUE but I don't know how add:

VariantRecalibrator.mode = BOTH

HaplotypeCaller.genotyping_mode = DISCOVERY

I get a "not found: value BOTH/DISCOVERY" error.

Thank you in advance,


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