How does HaplotypeCaller identify potentially variable regions?
Posted in Ask the GATK team | Last updated on 2013-07-17 09:49:26

Comments (2)

Hi there,

I'm starting to use use the HaplotypeCaller to identify variants in my exome projects, but I was wondering how it initially determines if a region has the potential to be variable. I couldn't find any useful documentation, could anyone of you help me to basically understand this first step?

Thank you in advance.

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