problems with how to set stand_call_conf
Posted in Ask the team | Last updated on


Comments (2)

Hi

I have several samples, some with a coverage of around 14, some with a coverage around 6. I want to use UnifiedGenotyper for SNP calling but I have no clue how to set stand_call_conf (and stand_emit_conf) as it is suggested to set stand_call_conf for samples with coverage >10 to 30 and for samples with coverage <10 to Q4. So how should I procede?


Return to top Comment on this article in the forum