Does GATK give a p-value for a SNP/INDEL Call?
Posted in Ask the GATK team | Last updated on

Comments (4)

Is Strand Bias-Fisher's p-value the only p-value we can obtain for a SNP/INDEL call? Do we have an option to calculate the actual HWE p-value instead of the HWE proportions?

~Thanks, Rini

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