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Hello, I am having a hard time finding the resource vcf files, needed for VariantRecalibration.

hapmap_3.3.b37.sites.vcf
1000G_omni2.5.b37.sites.vcf
dbsnp_135.b37.vcf

I don't seem to find them in the GATK bundle, as suggested:

http://gatkforums.broadinstitute.org/discussion/1215/how-can-i-access-the-gsa-public-ftp-server

Any help appreciated Thanks, G.

There are 5 comments on this article. To see them or add your own, view this post on the forum