UnifiedGenotyping, HaplotypeCaller and PhasebyTrasmission
Posted in Ask the GATK team | Last updated on 2013-02-19 19:41:33

Comments (1)

Hi to all

I began a variant analysis from 4 family related exome-seq samples in which a patology seems to be related to a polimorphism. I am just wondering which variant calling tools is better to use and if applying PhasebyTrasmission refinement is the correct way (in PhasebyTrasmission analysis does the read group that I assigned to bam file play a role in definition of the relation or I have to use just the ped file?).


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