There are 1 comments on this article. To see them or add your own, view this post on the forum

I have used UnifiedGenotyper to call SNPS. I found some SNPs that has been reported from low quality reads in chromosome X and chromosome Y. Is it possible not to take low quality reads into account while calling SNPs using UnifiedGenotyper? Or, do I need to do quality filtering of BAM files before hand ?

There are 1 comments on this article. To see them or add your own, view this post on the forum