In my VCF, what specifically does the filter Indel_FS mean?
Posted in Ask the GATK team | Last updated on 2013-01-07 19:13:17

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I am filtering looking for rare variants and found some frameshift variants in an interesting gene. Some of them are noted as PASS in the QC column of the VCF and some are noted as Indel_FS . What exactly does that second notation mean? I am almost positive that these will validate given how they segregate in my subjects.

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