Use GATK R Library (gsalib), how to build?
Posted in Ask the GATK team | Last updated on 2013-01-07 19:52:05


Comments (36)

Hi,

Does anyone use GATK R Library (gsalib)? I follow the guide at this link (http://gatkforums.broadinstitute.org/discussion/1244/what-is-a-gatkreport), when I type "ant gsalib" in my linux system with Java 1.6, the building failed. Here is the error message.

5:00pm qyu@vbronze /bit/data01/projects/prod_scripts/GATK/gatk-master $ ant gsalib Buildfile: build.xml

BUILD FAILED /bit/data01/projects/prod_scripts/GATK/gatk-master/build.xml:184: The type doesn't support the "erroronmissingdir" attribute.

Can anyone know what is wrong here?

Many thanks, Qing


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