Base Recalibrator Issue
Posted in Ask the GATK team | Last updated on 2012-11-05 20:20:30

Comments (10)

Hi I got the following error with GenomeAnalysisTK-2.2-2-gf44cc4e's Base Recalibrator.

##### ERROR MESSAGE: Key 2006 is too large for dimension 2 (max is 2001)

I also ran the picard's validateSamFile to validate my BAM file and it says NO ERRORs. What exactly does this error mean? what key is it talking about? And how can I fix it? Thanks, Ashu

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