STAMPY and RealignerTargetCreator
Posted in Ask the GATK team | Last updated on 2013-01-07 20:12:22


Comments (1)

Hello,

before I only used BWA and as you described in the best pratice I performed the realign step. Now I want to integrate in my pipeline Stampy associated with BWA.

Do you think, I should make the realign step ?

Thanks !


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