There are 2 comments on this article. To see them or add your own, view this post on the forum

Hello,

During running of the depthOfCoverage tool, I get the error: /tmp/RsQHCt1W: No space left on device

I have tried changing the TMPDIR environment variable (and exporting) but eventually I get the same error. Is there a way to change the temporary directory that GATK uses?

I'm running GATK v2.1-8-g5efb575 on a Linux system.

Thanks, Rick

There are 2 comments on this article. To see them or add your own, view this post on the forum