about an error using DepthOfCoverage with -geneList
Posted in Ask the GATK team | Last updated on 2013-01-07 20:38:43

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when " RMDTrackBuilder - Loading Tribble index from disk for file refGene.sorted.txt " error occurs:

ERROR MESSAGE: Badly formed genome loc: Contig chr1 given as location, but this contig isn't present in the Fasta sequence dictionary

is it means that my refGene.sorted.txt or b37.fasta file is badly formed? what should I do ?

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