BaseRecalibrator
Posted in Ask the GATK team | Last updated on 2012-10-03 19:30:14


Comments (54)

This method is described to be the "First pass of the base quality score recalibration". What is the second pass? It is not mentioned anywhere, or am I looking in the wrong place? In v1.2 there were two steps, is there only one step now for bqsr? Confused, Juan


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