Posted in Ask the GATK team | Last updated on 2012-07-24 14:19:56

Comments (5)

Dear all,

I was browsing through some of the less used functions in the GATK documentation, hence the following question: Does the LeftAlignIndels function do something additional that is not happening with IndelRealigner? In other words, do you recommend to run LeftAlignIndels on top of the indel realignment?

Best regards, Sophia

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