This Read Filter is automatically applied to the data by the Engine before processing by DownsampleReadsQC.
This tool can be run in multi-threaded mode using this option.
This tool overrides the engine's default downsampling settings.
The arguments described in the entries below can be supplied to this tool to modify its behavior. For example, the -L argument directs the GATK engine restricts processing to specific genomic intervals (this is an Engine capability and is therefore available to all GATK walkers).
This table summarizes the command-line arguments that are specific to this tool. For details, see the list further down below the table.
|--out||StingSAMFileWriter||NA||Write output to this BAM filename instead of STDOUT|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
Write output to this BAM filename instead of STDOUT.
GATK version 2.6-5-g53d88e1 built at 2013/07/18 18:11:55.