Prints out all of the RODs in the input data set.
These Read Filters are automatically applied to the data by the Engine before processing by PrintRODs.
This tool applies the following downsampling settings by default.
The arguments described in the entries below can be supplied to this tool to modify its behavior. For example, the -L argument directs the GATK engine restricts processing to specific genomic intervals (this is an Engine capability and is therefore available to all GATK walkers).
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.
|Argument name(s)||Default value||Summary|
||NA||The input ROD which should be printed out.|
|stdout||An output file created by the walker. Will overwrite contents if file exists|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
The input ROD which should be printed out.
--input binds reference ordered data. This argument supports ROD files of the following types: BCF2, BEAGLE, BED, BEDTABLE, EXAMPLEBINARY, GELITEXT, OLDDBSNP, RAWHAPMAP, REFSEQ, SAMPILEUP, SAMREAD, TABLE, VCF, VCF3
An output file created by the walker. Will overwrite contents if file exists
GATK version 3.0-0-g6bad1c6 built at 2014/03/06 06:38:04. GTD: NA