A walker that simply throws errors.
These Read Filters are automatically applied to the data by the Engine before processing by ErrorThrowing.
This tool can be run in multi-threaded mode using these options.
This tool applies the following downsampling settings by default.
The arguments described in the entries below can be supplied to this tool to modify its behavior. For example, the -L argument directs the GATK engine restricts processing to specific genomic intervals (this is an Engine capability and is therefore available to all GATK walkers).
This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.
|Argument name(s)||Default value||Summary|
|NA||Java class of exception to throw|
|MAP||Determines which method to fail in|
Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.
Java class of exception to throw
Determines which method to fail in
The --failMethod argument is an enumerated type (FailMethod), which can have one of the following values:
GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA