TransmissionDisequilibriumTest

Wittkowski transmission disequilibrium test

Category Variant Annotations

VCF Field INFO (variant-level)

Type RodRequiringAnnotation


Overview

Test statistic from Wittkowski transmission disequilibrium test. The calculation is based on the following derivation in http://en.wikipedia.org/wiki/Transmission_disequilibrium_test#A_modified_version_of_the_TDT

Note that this annotation requires a valid ped file.

Caveat

This annotation can only be used with VariantAnnotator (not with UnifiedGenotyper or HaplotypeCaller).


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GATK version 3.1-1-g07a4bf8 built at 2014/03/18 07:00:36. GTD: NA