TandemRepeatAnnotator

Annotates variants that are composed of tandem repeats

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation


Overview

This tool outputs the number of times the tandem repeat unit is repeated, for each allele (including reference).

Caveat

This annotation is currently not compatible with HaplotypeCaller.


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.1-1-g07a4bf8 built at 2014/03/18 07:00:36. GTD: NA