A set of genomic annotations based on the output of the SnpEff variant effect predictor tool

Category Variant Annotations

VCF Field INFO (variant-level)

Type RodRequiringAnnotation


See for more information on the SnpEff tool


For each variant, this tool chooses one of the effects of highest biological impact from the SnpEff output file (which must be provided on the command line via --snpEffFile filename.vcf), and adds annotations on that effect.

See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA