SnpEff

A set of genomic annotations based on the output of the SnpEff variant effect predictor tool

Category Variant Annotations

VCF Field INFO (variant-level)

Type RodRequiringAnnotation


Overview

See http://snpeff.sourceforge.net/ for more information on the SnpEff tool

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For each variant, this tool chooses one of the effects of highest biological impact from the SnpEff output file (which must be provided on the command line via --snpEffFile filename.vcf), and adds annotations on that effect.


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA