MappingQualityRankSumTest

U-based z-approximation from the Mann-Whitney Rank Sum Test for mapping qualities

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation


Overview

This tool calculates the u-based z-approximation from the Mann-Whitney Rank Sum Test for mapping qualities (reads with ref bases vs. those with the alternate allele).

Caveat

The mapping quality rank sum test can not be calculated for sites without a mixture of reads showing both the reference and alternate alleles.


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA