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LikelihoodRankSumTest

U-based z-approximation from the Mann-Whitney Rank Sum Test contrasting the likelihoods of reads to their most likely haplotypes.

Category Variant Annotations

VCF Field INFO (variant-level)

Type ActiveRegionBasedAnnotation


Overview

This is effectively testing for a differentiate quality in the modeling of the alt allele than the reference allele.

See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA