Likelihood-based (using PL field) test for the inbreeding among samples.
A continuous generalization of the Hardy-Weinberg test for disequilibrium that works
well with limited coverage per sample. See the 1000 Genomes Phase I release for
more information. Note that the Inbreeding Coefficient will not be calculated for files
with fewer than a minimum (generally 10) number of samples.
Guide Index |
Technical Documentation Index |
GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.