InbreedingCoeff

Likelihood-based (using PL field) test for the inbreeding among samples.

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation


Overview

A continuous generalization of the Hardy-Weinberg test for disequilibrium that works well with limited coverage per sample. See the 1000 Genomes Phase I release for more information. Note that the Inbreeding Coefficient can only be calculated for cohorts containing at least 10 founder samples.

See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA