Likelihood-based (using PL field) test for the inbreeding among samples.
A continuous generalization of the Hardy-Weinberg test for disequilibrium that works
well with limited coverage per sample. See the 1000 Genomes Phase I release for
more information. Note that the Inbreeding Coefficient can only be calculated for
cohorts containing at least 10 founder samples.
Guide Index |
Tool Documentation Index |
GATK version 3.0-0-g6bad1c6 built at 2014/03/06 06:38:04.