HaplotypeScore
Consistency of the site with two (and only two) segregating haplotypes.
Category
Variant Annotations
Annotation type
StandardAnnotation, ActiveRegionBasedAnnotation
Overview
Higher scores
are indicative of regions with bad alignments, often leading to artifactual SNP and indel calls.
Note that the Haplotype Score is only calculated for sites with read coverage.
See also
Guide Index |
Technical Documentation Index |
Support Forum
GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.
