Consistency of the site with two (and only two) segregating haplotypes.
are indicative of regions with bad alignments, often leading to artifactual SNP and indel calls.
Note that the Haplotype Score is only calculated for sites with read coverage.
Guide Index |
Tool Documentation Index |
GATK version 3.1-1-g07a4bf8 built at 2014/03/18 07:00:36.