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FisherStrand

Phred-scaled p-value using Fisher's Exact Test to detect strand bias

Category Variant Annotations

Annotation type StandardAnnotation, ActiveRegionBasedAnnotation


Overview

Phred-scaled p-value using Fisher's Exact Test to detect strand bias (the variation being seen on only the forward or only the reverse strand) in the reads. More bias is indicative of false positive calls.

Caveat

The Fisher Strand test may not be calculated for certain complex indel cases or for multi-allelic sites.


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GATK version 2.5-2-gdb4546e built at 2013/05/01 09:32:36.