Documentation

FisherStrand

Phred-scaled p-value using Fisher's Exact Test to detect strand bias

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation


Overview

Phred-scaled p-value using Fisher's Exact Test to detect strand bias (the variation being seen on only the forward or only the reverse strand) in the reads. More bias is indicative of false positive calls.

Caveat

The Fisher Strand test may not be calculated for certain complex indel cases or for multi-allelic sites.


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GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA