ClippingRankSumTest

U-based z-approximation from the Mann-Whitney Rank Sum Test for reads with clipped bases

Category Variant Annotations

VCF Field INFO (variant-level)

Type ActiveRegionBasedAnnotation


Overview

This tool calculates the u-based z-approximation from the Mann-Whitney Rank Sum Test for reads with clipped bases (reads with ref bases vs. those with the alternate allele).

Caveat

The clipping rank sum test can not be calculated for sites without a mixture of reads showing both the reference and alternate alleles.


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GATK version 3.2-2-gec30cee built at 2014/07/17 17:54:48. GTD: NA