Documentation

ChromosomeCounts

Allele counts and frequency for each ALT allele and total number of alleles in called genotypes

Category Variant Annotations

VCF Field INFO (variant-level)

Type StandardAnnotation, ActiveRegionBasedAnnotation


Overview

This annotation tool outputs the following:

  • Allele count in genotypes, for each ALT allele, in the same order as listed
  • Allele Frequency, for each ALT allele, in the same order as listed
  • Total number of alleles in called genotypes


See also Guide Index | Tool Documentation Index | Support Forum

GATK version 3.1-1-g07a4bf8 built at 2014/03/18 07:00:36. GTD: NA