SplitSamFile
Divides the input data set into separate BAM files, one for each sample in the input data set.
Category
Quality Control and Simple Analysis Tools
Introduction
The split
files are named concatenating the sample name to the end of the provided outputRoot command-line argument.
SplitSamFile specific arguments
| Name |
Type |
Default value |
Summary |
| Optional |
| --bam_compression |
Integer |
5 |
Compression level to use for writing BAM files |
| --outputRoot |
String |
NA |
output BAM file |
Additional capabilities
The arguments described in the entries below can be supplied to this tool to modify
its behavior. For example, the -L argument directs the GATK engine restricts processing
to specific genomic intervals. This capability is available to all GATK walkers.
Argument details
Compression level to use for writing BAM files.
output BAM file.
See also Documentation index | GATK Site | GATK support forum
GATK version 2.3-9-ge5ebf34 built at 2013/01/11 22:47:55.
